1092 10000 1 129864897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129865247 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0059;AVGPOST=0.9979;RSQ=0.8624;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129865307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129865369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6176;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129865374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9137;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0002;THETA=0.0003;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 129865432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129865498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9135;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 129865499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129865538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8491;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129865570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0199;AVGPOST=0.9988;RSQ=0.9718;ERATE=0.0004;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129865802 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129865859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7457;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129865870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129865871 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129865884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8396;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129865969 . A AG 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129865984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129866167 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5574;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129866172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9973;RSQ=0.4396;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129866283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5387;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129866406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0072;AVGPOST=0.9983;RSQ=0.9149;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129866408 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129866443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.8049;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129866501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9606;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129866660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129866758 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129866817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9093;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129866829 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0002;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129866835 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129866840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.517;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6716;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129866964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9971;RSQ=0.8459;ERATE=0.0004;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129867088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9129;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129867159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.844;LDAF=0.5973;AVGPOST=0.9516;RSQ=0.9223;ERATE=0.0013;THETA=0.0003;AC=1321;AN=2184 GT:DS:GL:BD 0.60485345 1 1 129867176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.824;LDAF=0.5511;AVGPOST=0.9041;RSQ=0.8564;ERATE=0.0082;THETA=0.0041;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 129867194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.967;LDAF=0.6344;AVGPOST=0.9850;RSQ=0.9745;ERATE=0.0012;THETA=0.0009;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 129867280 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129867374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0508;AVGPOST=0.9968;RSQ=0.9702;ERATE=0.0005;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 129867394 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9674;ERATE=0.0003;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129867533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0117;AVGPOST=0.9986;RSQ=0.9506;ERATE=0.0002;THETA=0.0012;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129867586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8344;ERATE=0.0002;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129867614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.9059;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129867639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7859;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129867641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0004;THETA=0.0018;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129867690 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5822;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129867743 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.268;LDAF=0.0038;AVGPOST=0.9951;RSQ=0.4301;ERATE=0.0013;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129867756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7399;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129867757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129867998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8558;ERATE=0.0003;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129868076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9352;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129868156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129868169 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7632;ERATE=0.0005;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129868424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9854;ERATE=0.0003;THETA=0.0020;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129868528 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4779;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129868883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9732;ERATE=0.0002;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129869016 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.6284;AVGPOST=0.9822;RSQ=0.9724;ERATE=0.0011;THETA=0.0011;AC=1377;AN=2184 GT:DS:GL:BD 0.63049453 1 1 129869358 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9037;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129869359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5842;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129869397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7426;AVGPOST=0.9862;RSQ=0.9736;ERATE=0.0014;THETA=0.0009;AC=1630;AN=2184 GT:DS:GL:BD 0.74633700 1 1 129869459 . C CA 29 PASS INDEL;BAVGPOST=0.987;BRSQ=0.489;LDAF=0.0223;AVGPOST=0.9718;RSQ=0.4967;ERATE=0.0047;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129869518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5553;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129869556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7514;ERATE=0.0005;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129869573 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6963;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129869611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.9087;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129869677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0594;AVGPOST=0.9935;RSQ=0.9555;ERATE=0.0010;THETA=0.0007;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 129869778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.874;LDAF=0.6012;AVGPOST=0.9072;RSQ=0.8521;ERATE=0.0106;THETA=0.0011;AC=1338;AN=2184 GT:DS:GL:BD 0.61263734 1 1 129869782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8394;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129869823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5688;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129869852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0236;AVGPOST=0.9979;RSQ=0.9566;ERATE=0.0006;THETA=0.0016;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 129869893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0088;AVGPOST=0.9960;RSQ=0.8136;ERATE=0.0007;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129869917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.329;LDAF=0.0072;AVGPOST=0.9929;RSQ=0.6175;ERATE=0.0008;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129870100 . AAAC A 79 PASS INDEL;BAVGPOST=0.989;BRSQ=0.331;LDAF=0.0158;AVGPOST=0.9785;RSQ=0.4484;ERATE=0.0017;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129870115 rs72029161 AATATATATATATATATATATATAT A 743 PASS INDEL;BAVGPOST=0.664;BRSQ=0.047;LDAF=0.2248;AVGPOST=0.7190;RSQ=0.3625;ERATE=0.0080;THETA=0.0012;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 129870133 rs71884913 TATATTA T 3062 PASS INDEL;BAVGPOST=0.936;BRSQ=0.816;LDAF=0.2170;AVGPOST=0.9723;RSQ=0.9397;ERATE=0.0012;THETA=0.0004;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 129870183 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3413;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129870261 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.7004;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129870270 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0551;AVGPOST=0.9975;RSQ=0.9817;ERATE=0.0005;THETA=0.0013;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 129870311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4164;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129870407 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.5251;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129870468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8860;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129870521 . TA T 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129870764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7062;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129870767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.899;LDAF=0.7059;AVGPOST=0.9180;RSQ=0.8642;ERATE=0.0086;THETA=0.0023;AC=1574;AN=2184 GT:DS:GL:BD 0.72069597 1 1 129870857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0024;AVGPOST=0.9966;RSQ=0.3991;ERATE=0.0005;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129870873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.955;LDAF=0.7441;AVGPOST=0.9883;RSQ=0.9777;ERATE=0.0003;THETA=0.0009;AC=1633;AN=2184 GT:DS:GL:BD 0.74771065 1 1 129870886 . C CG 4702 PASS INDEL;BAVGPOST=0.710;BRSQ=0.553;LDAF=0.5215;AVGPOST=0.7619;RSQ=0.6738;ERATE=0.0120;THETA=0.0005;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 129871023 rs71971184 G GT 18247 PASS INDEL;BAVGPOST=0.798;BRSQ=0.683;LDAF=0.6209;AVGPOST=0.8420;RSQ=0.7870;ERATE=0.0039;THETA=0.0007;AC=1406;AN=2184 GT:DS:GL:BD 0.64377290 1 1 129871027 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9991;RSQ=0.9370;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129871071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7802;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129871114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129871277 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9814;AVGPOST=0.9993;RSQ=0.9846;ERATE=0.0003;THETA=0.0006;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 129871462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5905;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129871575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6059;AVGPOST=0.9946;RSQ=0.9912;ERATE=0.0004;THETA=0.0007;AC=1326;AN=2184 GT:DS:GL:BD 0.60714287 1 1 129871713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129871750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5248;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129871935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0956;AVGPOST=0.9975;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 129872027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3867;AVGPOST=0.9942;RSQ=0.9911;ERATE=0.0007;THETA=0.0003;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 129872060 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129872090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129872207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129872221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7444;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129872333 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8627;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129872450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0922;AVGPOST=0.9984;RSQ=0.9918;ERATE=0.0003;THETA=0.0023;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 129872490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9253;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129872632 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0067;AVGPOST=0.9978;RSQ=0.8665;ERATE=0.0004;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129872645 . T TA 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0056;AVGPOST=0.9915;RSQ=0.4252;ERATE=0.0010;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129872772 . GAGAGAGAAAT G 207 PASS INDEL;BAVGPOST=0.996;BRSQ=0.282;LDAF=0.0042;AVGPOST=0.9962;RSQ=0.6310;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129872782 . G GA 374 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8810;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129872994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0215;AVGPOST=0.9975;RSQ=0.9611;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 129873328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5599;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129873384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.6335;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129873450 . TA T 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129873494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5980;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129873500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.4990;ERATE=0.0006;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129873593 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7945;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129873685 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8394;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129873761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129873770 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9963;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 129873836 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3450;AVGPOST=0.9938;RSQ=0.9909;ERATE=0.0006;THETA=0.0005;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 129873876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0065;AVGPOST=0.9991;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129874041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0458;AVGPOST=0.9988;RSQ=0.9880;ERATE=0.0003;THETA=0.0009;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 129874076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0137;AVGPOST=0.9988;RSQ=0.9735;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129874089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7756;ERATE=0.0007;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129874268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0030;AVGPOST=0.9963;RSQ=0.5320;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129874281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9180;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129874356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6455;ERATE=0.0004;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129874367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7856;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129874604 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9545;ERATE=0.0003;THETA=0.0048;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129874652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8777;ERATE=0.0003;THETA=0.0070;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129874655 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8362;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129874688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0877;AVGPOST=0.9977;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 129874926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0216;AVGPOST=0.9989;RSQ=0.9792;ERATE=0.0004;THETA=0.0035;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 129874969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0049;AVGPOST=0.9980;RSQ=0.8246;ERATE=0.0008;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129875167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4628;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129875180 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5270;AVGPOST=0.9964;RSQ=0.9940;ERATE=0.0006;THETA=0.0004;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 129875209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129875241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8771;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129875243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129875348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9639;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129875410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9750;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129875468 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4215;AVGPOST=0.9983;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 129875520 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4214;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0004;THETA=0.0006;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 129875548 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9634;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129875578 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7064;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129875594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0348;AVGPOST=0.9990;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 129875633 . TC T 99 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7011;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129875855 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129875895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129875902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4218;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 129875941 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0119;AVGPOST=0.9986;RSQ=0.9639;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 129875991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3522;AVGPOST=0.9935;RSQ=0.9905;ERATE=0.0006;THETA=0.0005;AC=764;AN=2184 GT:DS:GL:BD 0.34981686 0 1 129876081 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6869;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129876101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6345;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129876271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0191;AVGPOST=0.9992;RSQ=0.9851;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129876421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5957;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129876495 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.9944;AVGPOST=0.9991;RSQ=0.9339;ERATE=0.0003;THETA=0.0002;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 129876539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5256;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=1149;AN=2184 GT:DS:GL:BD 0.52609891 1 1 129876556 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8212;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129876637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4217;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 129876676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129876680 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8501;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129876749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0082;AVGPOST=0.9979;RSQ=0.9026;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129876768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4218;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 129876845 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129876861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129876865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4215;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 129876882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8043;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129876985 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129876997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129877012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129877053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3400;AVGPOST=0.9960;RSQ=0.9943;ERATE=0.0005;THETA=0.0019;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 129877064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129877098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.9128;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129877101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0069;AVGPOST=0.9995;RSQ=0.9668;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129877108 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9774;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129877225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1908;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 129877294 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0104;AVGPOST=0.9980;RSQ=0.9329;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129877330 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1907;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0051;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 129877452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129877551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129877759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.969;LDAF=0.1673;AVGPOST=0.9946;RSQ=0.9864;ERATE=0.0004;THETA=0.0010;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 129878005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.970;LDAF=0.1674;AVGPOST=0.9901;RSQ=0.9754;ERATE=0.0014;THETA=0.0016;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 129878006 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8334;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129878225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0755;AVGPOST=0.9988;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 129878227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.0893;AVGPOST=0.9960;RSQ=0.9835;ERATE=0.0005;THETA=0.0007;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 129878292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6833;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129878335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5176;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129878355 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129878429 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9298;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129878494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.5247;AVGPOST=0.9869;RSQ=0.9818;ERATE=0.0006;THETA=0.0023;AC=1149;AN=2184 GT:DS:GL:BD 0.52609891 1 1 129878557 . A AT 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4271;ERATE=0.0005;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129878602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1729;AVGPOST=0.9955;RSQ=0.9886;ERATE=0.0005;THETA=0.0042;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 129878639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9526;ERATE=0.0003;THETA=0.0292;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129878822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129878954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7452;ERATE=0.0005;THETA=0.0216;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129878972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.949;LDAF=0.6226;AVGPOST=0.9578;RSQ=0.9369;ERATE=0.0033;THETA=0.0095;AC=1366;AN=2184 GT:DS:GL:BD 0.62545788 1 1 129878974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.949;LDAF=0.2072;AVGPOST=0.9749;RSQ=0.9442;ERATE=0.0008;THETA=0.0153;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 129879008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129879033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129879055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0187;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129879059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5432;ERATE=0.0004;THETA=0.0171;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129879074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0220;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129879234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0144;AVGPOST=0.9952;RSQ=0.8652;ERATE=0.0025;THETA=0.0280;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 129879269 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0116;AVGPOST=0.9973;RSQ=0.9002;ERATE=0.0019;THETA=0.0130;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129879393 . A AATGT 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0032;AVGPOST=0.9945;RSQ=0.3674;ERATE=0.0006;THETA=0.0070;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129879426 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0192;AVGPOST=0.9946;RSQ=0.8832;ERATE=0.0031;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129879454 rs3838278 AG A 1347 PASS INDEL;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0100;AVGPOST=0.9954;RSQ=0.8259;ERATE=0.0004;THETA=0.0086;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129879520 . GC G 215 PASS INDEL;BAVGPOST=0.975;BRSQ=0.352;LDAF=0.1010;AVGPOST=0.8638;RSQ=0.4172;ERATE=0.0032;THETA=0.0077;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 129879522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9169;ERATE=0.0003;THETA=0.0407;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129879626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5875;ERATE=0.0005;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129879780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.5128;ERATE=0.0003;THETA=0.0247;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129879786 rs3838279 GC G 35890 PASS INDEL;BAVGPOST=0.981;BRSQ=0.962;LDAF=0.3579;AVGPOST=0.9665;RSQ=0.9477;ERATE=0.0032;THETA=0.0106;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 129880001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129880070 . ATG A 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129880084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0003;THETA=0.0022;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129880126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9986;RSQ=0.9349;ERATE=0.0004;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129880205 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8944;ERATE=0.0003;THETA=0.0069;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129880229 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9771;ERATE=0.0004;THETA=0.0042;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129880295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2176;AVGPOST=0.9941;RSQ=0.9868;ERATE=0.0004;THETA=0.0019;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 129880296 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0017;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129880338 rs72512591 T TA 28291 PASS INDEL;BAVGPOST=0.979;BRSQ=0.965;LDAF=0.6233;AVGPOST=0.9828;RSQ=0.9751;ERATE=0.0004;THETA=0.0005;AC=1362;AN=2184 GT:DS:GL:BD 0.62362635 1 1 129880383 rs5776199 A AG 75264 PASS INDEL;BAVGPOST=0.978;BRSQ=0.965;LDAF=0.6229;AVGPOST=0.9810;RSQ=0.9729;ERATE=0.0007;THETA=0.0003;AC=1359;AN=2184 GT:DS:GL:BD 0.62225276 1 1 129880384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8363;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129880400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129880457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0174;AVGPOST=0.9989;RSQ=0.9717;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129880458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9994;RSQ=0.9711;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129880611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0003;THETA=0.0069;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129880679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129880761 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129880793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0052;AVGPOST=0.9976;RSQ=0.8250;ERATE=0.0005;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129880827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0100;AVGPOST=0.9986;RSQ=0.9340;ERATE=0.0005;THETA=0.0032;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129880886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8049;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129880899 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6056;AVGPOST=0.9939;RSQ=0.9902;ERATE=0.0013;THETA=0.0012;AC=1325;AN=2184 GT:DS:GL:BD 0.60668498 1 1 129881066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.1189;AVGPOST=0.9888;RSQ=0.9617;ERATE=0.0006;THETA=0.0002;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 129881672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129881728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0080;AVGPOST=0.9940;RSQ=0.7099;ERATE=0.0031;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129881733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.785;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7764;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129881734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8913;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129881780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129881786 . TAAAG T 422 PASS INDEL;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8530;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129881883 rs56275191 T TA 6577 PASS INDEL;BAVGPOST=0.988;BRSQ=0.938;LDAF=0.1064;AVGPOST=0.9714;RSQ=0.8806;ERATE=0.0088;THETA=0.0004;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 129881905 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129881952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129881972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3519;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129882048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0166;AVGPOST=0.9987;RSQ=0.9718;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 129882069 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129882142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7297;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129882233 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.8867;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129882404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129882578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129882580 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2217;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 129882606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129882692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129882705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129882756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9210;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129882758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1433;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 129882863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0258;AVGPOST=0.9989;RSQ=0.9829;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 129882912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0495;AVGPOST=0.9989;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 129883073 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0150;AVGPOST=0.9973;RSQ=0.9355;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129883127 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6898;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129883211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129883251 . T TG 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5095;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129883253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129883296 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9237;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129883460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129883481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0689;AVGPOST=0.9993;RSQ=0.9952;ERATE=0.0004;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 129883931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129883975 . TG T 1601 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9786;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129884124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0692;AVGPOST=0.9984;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 129884131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0075;AVGPOST=0.9982;RSQ=0.8914;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129884148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.897;LDAF=0.0135;AVGPOST=0.9945;RSQ=0.8437;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129884180 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0683;AVGPOST=0.9992;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 129884185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4040;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129884321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129884384 rs35604229 CAG C 7854 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0694;AVGPOST=0.9975;RSQ=0.9843;ERATE=0.0007;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 129884423 . G GT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129884437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.9025;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129884630 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.907;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9064;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129884658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129884693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3390;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129884727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0056;AVGPOST=0.9970;RSQ=0.8217;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129884743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0496;AVGPOST=0.9979;RSQ=0.9828;ERATE=0.0005;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 129884802 . G GT 636 PASS INDEL;BAVGPOST=0.983;BRSQ=0.661;LDAF=0.0479;AVGPOST=0.9407;RSQ=0.4932;ERATE=0.0130;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129884909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129884915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1498;AVGPOST=0.9919;RSQ=0.9756;ERATE=0.0024;THETA=0.0002;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 129884917 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0093;AVGPOST=0.9937;RSQ=0.7358;ERATE=0.0009;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129884919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129885252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.897;LDAF=0.0353;AVGPOST=0.9946;RSQ=0.9369;ERATE=0.0003;THETA=0.0058;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 129885330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129885397 . TC T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0027;AVGPOST=0.9957;RSQ=0.4352;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129885474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7541;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129885718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129885724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0001;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 129886165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6805;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129886192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129886201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129886221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1432;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 129886222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0804;AVGPOST=0.9972;RSQ=0.9853;ERATE=0.0004;THETA=0.0002;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 129886262 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0296;AVGPOST=0.9993;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 129886292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9524;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129886434 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7198;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129886435 . GT G 323 PASS INDEL;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8554;ERATE=0.0003;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129886459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9109;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129886488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9779;ERATE=0.0003;THETA=0.0035;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129886647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6042;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129886660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.8856;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129886683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1048;AVGPOST=0.9982;RSQ=0.9924;ERATE=0.0004;THETA=0.0002;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 129886719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9012;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129886770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9479;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129886808 . GGT G 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129886814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8425;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129886837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9990;RSQ=0.9709;ERATE=0.0003;THETA=0.0011;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 129886988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129887035 . A AT 206 PASS INDEL;BAVGPOST=0.995;BRSQ=0.681;LDAF=0.0174;AVGPOST=0.9832;RSQ=0.5928;ERATE=0.0036;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 129887036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4800;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129887130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129887235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129887236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129887462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129887508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0002;THETA=0.0014;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 129887576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7766;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129887723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1692;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 129887852 . TAA T 657 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9676;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129887853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1688;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 129887877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129887929 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129887967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6051;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129887978 . G GT 135 PASS INDEL;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6983;ERATE=0.0007;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129888051 . TC T 33116 PASS INDEL;BAVGPOST=0.973;BRSQ=0.919;LDAF=0.8094;AVGPOST=0.9388;RSQ=0.8602;ERATE=0.0071;THETA=0.0003;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 129888078 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9991;RSQ=0.9713;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129888120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8197;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129888194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0087;AVGPOST=0.9965;RSQ=0.8471;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129888269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4755;AVGPOST=0.9964;RSQ=0.9944;ERATE=0.0005;THETA=0.0006;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 129888281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5150;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129888345 . TTTC T 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0035;AVGPOST=0.9948;RSQ=0.5124;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129888362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.8016;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129888414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9173;ERATE=0.0002;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129888426 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9360;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129888464 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7959;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129888487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.707;LDAF=0.0073;AVGPOST=0.9925;RSQ=0.6222;ERATE=0.0009;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129888513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.444;LDAF=0.0103;AVGPOST=0.9909;RSQ=0.6640;ERATE=0.0012;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129888554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5389;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129888592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0078;AVGPOST=0.9919;RSQ=0.6236;ERATE=0.0010;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129888615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4031;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129888623 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1687;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0004;THETA=0.0008;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 129888635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.974;LDAF=0.4752;AVGPOST=0.9802;RSQ=0.9695;ERATE=0.0025;THETA=0.0004;AC=1043;AN=2184 GT:DS:GL:BD 0.47756410 0 1 129888714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.801;LDAF=0.0129;AVGPOST=0.9942;RSQ=0.8409;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 129888744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6333;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129888745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0071;AVGPOST=0.9946;RSQ=0.7204;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129888746 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 129888904 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0140;AVGPOST=0.9995;RSQ=0.9820;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129888920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8963;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129889007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.7160;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129889008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2544;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0007;THETA=0.0003;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 129889076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4683;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129889199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4287;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 129889336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8676;ERATE=0.0002;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129889352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9815;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 129889361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129889364 rs111236862 AT A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129889604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2538;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 129889739 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129889774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5317;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129889777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6688;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129889810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0091;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129889811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8505;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129889897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5202;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129889945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0057;AVGPOST=0.9985;RSQ=0.8829;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129889949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6550;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129889971 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129890046 rs61571450 AG A 32674 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2399;AVGPOST=0.9970;RSQ=0.9955;ERATE=0.0005;THETA=0.0005;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 129890051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9589;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129890061 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129890084 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2405;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0002;THETA=0.0004;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 129890095 . ATG A 77 PASS INDEL;BAVGPOST=0.990;BRSQ=0.655;LDAF=0.0379;AVGPOST=0.9533;RSQ=0.5037;ERATE=0.0103;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 129890248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129890461 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0144;AVGPOST=0.9972;RSQ=0.9353;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129890712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6905;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129890805 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0138;AVGPOST=0.9967;RSQ=0.9146;ERATE=0.0003;THETA=0.0014;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129890855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.6308;ERATE=0.0009;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129890864 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129890971 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9323;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=2036;AN=2184 GT:DS:GL:BD 0.93223441 1 1 129891137 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3886;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129891187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6862;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129891364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9982;RSQ=0.2986;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129891374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0155;AVGPOST=0.9973;RSQ=0.9425;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 129891419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.1412;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129891481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0044;AVGPOST=0.9980;RSQ=0.8124;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129891493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0141;AVGPOST=0.9981;RSQ=0.9462;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129891522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.732;LDAF=0.8575;AVGPOST=0.9180;RSQ=0.7394;ERATE=0.0180;THETA=0.0008;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 129891621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.475;LDAF=0.0082;AVGPOST=0.9962;RSQ=0.8024;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129891646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5295;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129891730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129891907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 129891923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0002;THETA=0.0092;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6564;ERATE=0.0002;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892205 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8721;ERATE=0.0003;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129892206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0002;THETA=0.0115;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892294 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0002;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129892474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0134;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129892513 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0150;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892583 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.969;LDAF=0.1200;AVGPOST=0.9879;RSQ=0.9567;ERATE=0.0004;THETA=0.0022;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 129892744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5420;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129892785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.0221;AVGPOST=0.9950;RSQ=0.9162;ERATE=0.0003;THETA=0.0044;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 129892867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9829;ERATE=0.0003;THETA=0.0018;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129892878 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0125;AVGPOST=0.9972;RSQ=0.9118;ERATE=0.0008;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129892909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0002;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6993;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129893246 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7926;ERATE=0.0003;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129893280 . T TCA 6305 PASS INDEL;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0453;AVGPOST=0.9953;RSQ=0.9579;ERATE=0.0003;THETA=0.0019;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 129893355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4888;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9993;RSQ=0.9444;ERATE=0.0003;THETA=0.0041;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129893445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.960;LDAF=0.1069;AVGPOST=0.9857;RSQ=0.9431;ERATE=0.0006;THETA=0.0006;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 129893490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7786;ERATE=0.0002;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129893532 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5184;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893680 . A AG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3340;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8201;ERATE=0.0002;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129893823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6116;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129893902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.0944;AVGPOST=0.9915;RSQ=0.9635;ERATE=0.0007;THETA=0.0014;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 129893911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5209;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129893935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129894035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.9178;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129894189 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129894231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8400;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129894313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6649;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129894499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7641;ERATE=0.0004;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129894500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0047;AVGPOST=0.9972;RSQ=0.7870;ERATE=0.0007;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129894646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129894714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0118;AVGPOST=0.9970;RSQ=0.9041;ERATE=0.0004;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129894731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5948;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129894744 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7865;ERATE=0.0007;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129894790 . TTA T 9249 PASS INDEL;BAVGPOST=0.875;BRSQ=0.766;LDAF=0.5827;AVGPOST=0.8214;RSQ=0.7152;ERATE=0.0268;THETA=0.0011;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 129894882 . AG A 19133 PASS INDEL;BAVGPOST=0.997;BRSQ=0;LDAF=0.9954;AVGPOST=0.9928;RSQ=0.3234;ERATE=0.0013;THETA=0.0017;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 129894889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.942;LDAF=0.7057;AVGPOST=0.9502;RSQ=0.9144;ERATE=0.0038;THETA=0.0024;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 129894894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7868;ERATE=0.0002;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129895234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0002;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129895310 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9172;ERATE=0.0003;THETA=0.0046;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129895340 . C CT 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7421;ERATE=0.0002;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129895429 . G GTT 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6133;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129895539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5053;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6825;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129895612 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2916;AVGPOST=0.9943;RSQ=0.9901;ERATE=0.0004;THETA=0.0003;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 129895631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0973;AVGPOST=0.9990;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 129895692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129895748 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0172;AVGPOST=0.9990;RSQ=0.9764;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129895877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129895907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129895990 . ATTC A 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129896060 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9124;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129896113 . GATA G 605 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9529;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129896124 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7300;AVGPOST=0.9974;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 129896308 . CA C 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4339;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129896314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129896369 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.943;LDAF=0.0361;AVGPOST=0.9974;RSQ=0.9740;ERATE=0.0003;THETA=0.0008;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 129896406 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6770;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129896460 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9980;RSQ=0.9173;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129896690 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7802;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129896947 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.782;LDAF=0.0118;AVGPOST=0.9979;RSQ=0.9294;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129896955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129896991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6211;AVGPOST=0.9959;RSQ=0.9933;ERATE=0.0005;THETA=0.0003;AC=1357;AN=2184 GT:DS:GL:BD 0.62133700 1 1 129897047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.993;LDAF=0.5812;AVGPOST=0.9938;RSQ=0.9902;ERATE=0.0005;THETA=0.0002;AC=1274;AN=2184 GT:DS:GL:BD 0.58333331 1 1 129897179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129897271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0587;AVGPOST=0.9987;RSQ=0.9907;ERATE=0.0003;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 129897275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5698;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129897289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0071;AVGPOST=0.9964;RSQ=0.8046;ERATE=0.0006;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129897335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8974;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129897511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5085;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129897574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7286;ERATE=0.0004;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129897578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8068;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129897936 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8004;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129898045 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129898092 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7055;ERATE=0.0004;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129898441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7766;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129898593 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129898609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129898694 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8390;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129898721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129898838 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129899001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0005;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129899030 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0448;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 129899071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0277;AVGPOST=0.9991;RSQ=0.9867;ERATE=0.0004;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 129899495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4124;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129899797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9562;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129900151 rs111875631 G GA 94327 PASS INDEL;BAVGPOST=0.988;BRSQ=0.545;LDAF=0.9823;AVGPOST=0.9797;RSQ=0.5331;ERATE=0.0067;THETA=0.0024;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 129900273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129900321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0025;AVGPOST=0.9966;RSQ=0.4878;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129900324 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0198;AVGPOST=0.9986;RSQ=0.9726;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129900352 . CATAA C 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7502;ERATE=0.0006;THETA=0.0043;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129900434 . TAAATA T 454 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7944;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129900436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0092;AVGPOST=0.9972;RSQ=0.8844;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129900461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900580 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5200;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900586 . GTAAA G 200 PASS INDEL;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7235;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129900597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5614;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129900869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9989;RSQ=0.9687;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 129900885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7027;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129900936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0514;AVGPOST=0.9969;RSQ=0.9776;ERATE=0.0004;THETA=0.0008;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 129900960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0306;AVGPOST=0.9974;RSQ=0.9697;ERATE=0.0005;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 129901003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7207;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129901066 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4295;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129901261 . C CA 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6009;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129901342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0037;AVGPOST=0.9944;RSQ=0.4483;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129901506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9413;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129901610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8570;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129901790 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129901832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5831;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129901843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7105;ERATE=0.0004;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129901895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129901982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0446;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 129902360 rs5776474 AT A 10998 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1093;AVGPOST=0.9970;RSQ=0.9885;ERATE=0.0008;THETA=0.0003;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 129902389 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129902407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0343;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 129902470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902557 . TAG T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5101;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902591 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5576;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902664 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8059;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129902708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902953 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129902998 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8911;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129903011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129903100 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129903138 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129903172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7302;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129903239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0344;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 129903321 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129903323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5510;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129903428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8802;ERATE=0.0006;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129903496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0119;AVGPOST=0.9967;RSQ=0.9120;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129903558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129903629 . G GTA 733 PASS INDEL;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8961;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129903638 . GTAGT G 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.8824;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129903857 rs112029945 C CA 18223 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1897;AVGPOST=0.9942;RSQ=0.9873;ERATE=0.0009;THETA=0.0007;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 129904109 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0249;AVGPOST=0.9988;RSQ=0.9788;ERATE=0.0003;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 129904142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1285;AVGPOST=0.9974;RSQ=0.9906;ERATE=0.0004;THETA=0.0003;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 129904271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0342;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0003;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 129904300 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7587;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129904370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9167;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129904385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6772;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129904399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0258;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 129904558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0270;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 129904593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6641;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129904604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129904647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7204;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129904895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0272;AVGPOST=0.9991;RSQ=0.9865;ERATE=0.0004;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 129904933 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129905118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0011;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 129905131 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5887;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129905142 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8086;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129905244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9119;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129905519 . TTAC T 40 PASS INDEL;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129905647 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129905725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0217;AVGPOST=0.9973;RSQ=0.9551;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 129905773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0070;AVGPOST=0.9979;RSQ=0.8841;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129905862 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.795;LDAF=0.0112;AVGPOST=0.9944;RSQ=0.8144;ERATE=0.0007;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129906081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7857;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129906126 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.6181;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129906184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9978;AVGPOST=0.9962;RSQ=0.3215;ERATE=0.0006;THETA=0.0004;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 129906208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3180;AVGPOST=0.9876;RSQ=0.9820;ERATE=0.0004;THETA=0.0005;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 129906378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129906450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129906554 . GT G 220 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129906581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129906601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129906711 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9192;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129906721 . T TA 641 PASS INDEL;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8944;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129906742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129906810 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3746;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 129906861 . ATCTC A 1186 PASS INDEL;BAVGPOST=0.995;BRSQ=0.926;LDAF=0.0291;AVGPOST=0.9973;RSQ=0.9659;ERATE=0.0004;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 129906893 . CTCTCT C 5790 PASS INDEL;BAVGPOST=0.995;BRSQ=0.926;LDAF=0.0291;AVGPOST=0.9980;RSQ=0.9762;ERATE=0.0004;THETA=0.0002;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 129906897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8571;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129906947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8185;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129906953 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6910;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129907113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1290;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 129907131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1139;AVGPOST=0.9970;RSQ=0.9892;ERATE=0.0003;THETA=0.0008;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 129907309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1379;AVGPOST=0.9973;RSQ=0.9924;ERATE=0.0007;THETA=0.0006;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 129907361 . A AT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129907485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.8009;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129907508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7772;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129907544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129907621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129907733 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129907896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1373;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0010;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 129907928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9815;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129907960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7461;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129907966 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0002;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129908059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.6117;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129908190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129908357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6894;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129908425 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129908426 . AT A 259 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8900;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129908540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2938;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 129908596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129908741 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9738;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129908881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1374;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0003;THETA=0.0007;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 129908989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129909017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129909235 . ATTCC A 40 PASS INDEL;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0056;AVGPOST=0.9924;RSQ=0.4902;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129909391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129909494 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129909575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5357;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129909636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8462;ERATE=0.0004;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129909756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129910101 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129910125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129910243 . T TTG 19 PASS INDEL;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0045;AVGPOST=0.9967;RSQ=0.7097;ERATE=0.0007;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129910336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0289;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 129910382 . TG T 219 PASS INDEL;BAVGPOST=0.946;BRSQ=0.428;LDAF=0.0811;AVGPOST=0.8993;RSQ=0.4573;ERATE=0.0176;THETA=0.0006;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 129910442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8863;ERATE=0.0005;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129910450 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9044;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129910518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5517;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129910684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129910742 . G GC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129910776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8280;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129910792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0636;AVGPOST=0.9980;RSQ=0.9899;ERATE=0.0004;THETA=0.0005;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 129910802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129910906 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2685;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0006;THETA=0.0004;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 129910962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0092;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129911024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2682;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0008;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 129911192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9565;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129911256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911291 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7913;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129911295 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8347;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129911300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2685;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0005;THETA=0.0015;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 129911335 . G GGAA 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4427;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0730;AVGPOST=0.9993;RSQ=0.9955;ERATE=0.0004;THETA=0.0006;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 129911615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8645;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129911755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2912;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 129911762 . G GT 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911878 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129911881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.710;LDAF=0.0053;AVGPOST=0.9971;RSQ=0.7542;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129912239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9830;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129912281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3007;AVGPOST=0.9964;RSQ=0.9930;ERATE=0.0009;THETA=0.0001;AC=656;AN=2184 GT:DS:GL:BD 0.30036631 0 1 129912302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6592;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9530;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129912422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7758;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129912457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7758;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129912464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6921;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129912618 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9624;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129912674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7761;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129912720 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7765;AVGPOST=0.9980;RSQ=0.9955;ERATE=0.0006;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129912784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9988;RSQ=0.9452;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129912797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6993;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129912810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0032;AVGPOST=0.9957;RSQ=0.5014;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129912831 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6461;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129912846 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7744;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 129912867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129912903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9072;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129912907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5582;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129912990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3397;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 129913027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7798;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129913034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1384;AVGPOST=0.9983;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 129913101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7702;AVGPOST=0.9892;RSQ=0.9806;ERATE=0.0015;THETA=0.0005;AC=1686;AN=2184 GT:DS:GL:BD 0.77197802 1 1 129913129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913157 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129913191 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7758;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129913233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129913243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9237;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129913254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5023;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913275 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.3292;AVGPOST=0.9970;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 129913318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7749;AVGPOST=0.9973;RSQ=0.9943;ERATE=0.0006;THETA=0.0004;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 129913338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913395 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3007;AVGPOST=0.9986;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=656;AN=2184 GT:DS:GL:BD 0.30036631 0 1 129913513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6426;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129913545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6365;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129913551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1300;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 129913581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0322;AVGPOST=0.9971;RSQ=0.9696;ERATE=0.0003;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 129913633 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3337;AVGPOST=0.9940;RSQ=0.9910;ERATE=0.0006;THETA=0.0002;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 129913761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129913790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129913822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0234;AVGPOST=0.9984;RSQ=0.9752;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 129914044 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7153;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129914082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7767;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129914200 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9769;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129914255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8460;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129914340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7751;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0006;THETA=0.0002;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 129914353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8781;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129914423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129914438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1298;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 129914441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.634;LDAF=0.0040;AVGPOST=0.9965;RSQ=0.6460;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129914593 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.8051;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129914597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4536;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.3297;AVGPOST=0.9971;RSQ=0.9938;ERATE=0.0006;THETA=0.0002;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 129914602 . GA G 325 PASS INDEL;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.7093;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129914616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6242;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129914644 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4859;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914672 . C CAA 1464 PASS INDEL;BAVGPOST=0.966;BRSQ=0.817;LDAF=0.1086;AVGPOST=0.9798;RSQ=0.9186;ERATE=0.0004;THETA=0.0002;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 129914673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9621;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129914694 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.5809;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129914703 . A AG 2663 PASS INDEL;BAVGPOST=0.906;BRSQ=0.630;LDAF=0.1602;AVGPOST=0.8886;RSQ=0.6884;ERATE=0.0179;THETA=0.0006;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 129914814 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1134;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 129914877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0308;AVGPOST=0.9978;RSQ=0.9716;ERATE=0.0004;THETA=0.0002;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 129914893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9395;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129914914 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9075;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129914918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5526;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129914931 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0031;AVGPOST=0.9978;RSQ=0.7102;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129914999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4815;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129915088 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9012;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129915115 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129915216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8209;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129915221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129915260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1286;AVGPOST=0.9994;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 129915263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8196;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129915276 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129915382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1286;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 129915383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9695;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129915391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9644;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129915468 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9837;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129915495 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7759;AVGPOST=0.9968;RSQ=0.9932;ERATE=0.0006;THETA=0.0007;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 129915527 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129915575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9997;RSQ=0.9815;ERATE=0.0003;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129915684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8096;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129915705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129915821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0764;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 129915838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9174;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129915842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1305;AVGPOST=0.9983;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 129915860 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9578;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129915871 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9178;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129915902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.6053;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129915972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3350;AVGPOST=0.9966;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=733;AN=2184 GT:DS:GL:BD 0.33562270 0 1 129916029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.976;LDAF=0.3301;AVGPOST=0.9971;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 129916035 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9800;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129916036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9082;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129916069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8957;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129916130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1310;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 129916152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129916239 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1298;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 129916243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5870;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129916280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129916295 . GT G 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5607;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129916296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129916343 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129916362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0038;AVGPOST=0.9973;RSQ=0.7385;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129916380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8350;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129916422 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129916481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129916542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1299;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 129916543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9040;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129916558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5991;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129916663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0937;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 129916787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5993;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129916838 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8603;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129916850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9683;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129916997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3314;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0004;THETA=0.0002;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 129917004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8279;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129917043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7121;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129917229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129917238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129917251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6556;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129917254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9874;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129917261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1614;AVGPOST=0.9971;RSQ=0.9918;ERATE=0.0004;THETA=0.0006;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 129917289 . A AT 90 PASS INDEL;BAVGPOST=0.986;BRSQ=0.526;LDAF=0.0229;AVGPOST=0.9718;RSQ=0.5078;ERATE=0.0074;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 129917537 . T TC 253 PASS INDEL;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5821;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129917547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.9156;ERATE=0.0002;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129917601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129917611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129917656 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129917715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129917749 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7068;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129917766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1163;ERATE=0.0003;THETA=0.0017;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129917785 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9377;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129917998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6615;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129918012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2186;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 129918021 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7059;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129918131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5240;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129918154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0511;AVGPOST=0.9980;RSQ=0.9836;ERATE=0.0003;THETA=0.0001;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 129918357 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9083;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129918425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129918431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129918483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4802;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129918500 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0125;AVGPOST=0.9984;RSQ=0.9532;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129918554 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9828;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129918566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9154;ERATE=0.0007;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129918672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0264;AVGPOST=0.9993;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129918687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9628;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129918695 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129918730 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8304;ERATE=0.0003;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129918766 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7366;ERATE=0.0002;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129918783 . GTCTC G 290 PASS INDEL;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9451;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129918832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7887;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129918897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9934;AVGPOST=0.9997;RSQ=0.9772;ERATE=0.0003;THETA=0.0003;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 129918949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9997;RSQ=0.0497;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 129919000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5360;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129919099 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6377;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129919195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0983;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0012;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 129919300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0716;AVGPOST=0.9994;RSQ=0.9962;ERATE=0.0002;THETA=0.0004;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 129919418 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5364;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129919609 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9934;AVGPOST=0.9996;RSQ=0.9725;ERATE=0.0003;THETA=0.0007;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 129919624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129919719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9597;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129919756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9997;RSQ=0.0664;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129919815 . CA C 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5997;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129919822 rs59697048 T TA 13180 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0470;AVGPOST=0.9982;RSQ=0.9887;ERATE=0.0003;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 129919903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129919909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9446;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129919990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129919996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6489;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129920086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.6074;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129920243 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9983;RSQ=0.9449;ERATE=0.0004;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129920353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7719;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129920380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5800;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129920391 . TA T 371 PASS INDEL;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7443;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129920443 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6065;AVGPOST=0.9955;RSQ=0.9934;ERATE=0.0009;THETA=0.0003;AC=1323;AN=2184 GT:DS:GL:BD 0.60576922 1 1 129920529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4826;ERATE=0.0007;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129920610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129920642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5237;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129920644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7011;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129920689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0432;AVGPOST=0.9994;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 129920769 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7736;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129920818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129920819 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.572;LDAF=0.0154;AVGPOST=0.9839;RSQ=0.5931;ERATE=0.0024;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129920854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0351;AVGPOST=0.9984;RSQ=0.9846;ERATE=0.0003;THETA=0.0017;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 129920956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.8042;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129920974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7524;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129921160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129921201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1103;AVGPOST=0.9966;RSQ=0.9894;ERATE=0.0003;THETA=0.0004;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 129921365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6470;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129921519 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129921556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6041;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 129921590 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6193;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129921663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.804;LDAF=0.0185;AVGPOST=0.9939;RSQ=0.8745;ERATE=0.0005;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129921815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129921841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4628;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129921915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0785;AVGPOST=0.9979;RSQ=0.9892;ERATE=0.0005;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 129921931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5065;AVGPOST=0.9973;RSQ=0.9961;ERATE=0.0004;THETA=0.0009;AC=1106;AN=2184 GT:DS:GL:BD 0.50641024 1 1 129921975 . AG A 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0046;AVGPOST=0.9920;RSQ=0.3200;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129922026 . G GA 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5758;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129922027 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0075;AVGPOST=0.9968;RSQ=0.8271;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129922122 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8219;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129922253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0455;AVGPOST=0.9993;RSQ=0.9933;ERATE=0.0003;THETA=0.0008;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 129922296 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0431;AVGPOST=0.9992;RSQ=0.9929;ERATE=0.0003;THETA=0.0009;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 129922496 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6100;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129922552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0119;AVGPOST=0.9964;RSQ=0.8944;ERATE=0.0008;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129922625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7834;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129922626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8513;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129922700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129922789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6915;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129922841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1063;AVGPOST=0.9984;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 129922919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8628;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129922939 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9685;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129922948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129922960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6537;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129923014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7543;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129923056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129923114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0160;AVGPOST=0.9982;RSQ=0.9554;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129923130 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129923158 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6414;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129923226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129923258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5287;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129923279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.1175;AVGPOST=0.9899;RSQ=0.9653;ERATE=0.0004;THETA=0.0006;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 129923296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4538;AVGPOST=0.9944;RSQ=0.9921;ERATE=0.0010;THETA=0.0008;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 129923372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7315;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129923383 . AT A 1012 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9420;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129923555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5389;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129923710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129923783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8357;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129923849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8677;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129923892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4555;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0005;THETA=0.0003;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 129923970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0170;AVGPOST=0.9982;RSQ=0.9579;ERATE=0.0004;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129924001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7169;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129924002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4560;AVGPOST=0.9978;RSQ=0.9969;ERATE=0.0003;THETA=0.0006;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 129924100 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1142;AVGPOST=0.9977;RSQ=0.9901;ERATE=0.0004;THETA=0.0004;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 129924248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129924260 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9581;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129924263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129924477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0115;AVGPOST=0.9959;RSQ=0.8720;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129924480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0140;AVGPOST=0.9975;RSQ=0.9269;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 129924481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129924592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0218;AVGPOST=0.9976;RSQ=0.9523;ERATE=0.0005;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 129924727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4226;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129924761 . ACT A 1053 PASS INDEL;BAVGPOST=0.995;BRSQ=0.832;LDAF=0.0099;AVGPOST=0.9963;RSQ=0.8470;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129924884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129924895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0192;AVGPOST=0.9979;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129924957 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8005;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129925018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7780;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129925038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7400;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129925218 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5898;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129925256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0513;AVGPOST=0.9972;RSQ=0.9774;ERATE=0.0003;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 129925273 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4623;AVGPOST=0.9972;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 129925274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0211;AVGPOST=0.9997;RSQ=0.9937;ERATE=0.0003;THETA=0.0001;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 129925356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6530;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129925418 . GA G 66 PASS INDEL;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9397;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129925563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6651;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129925597 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129925605 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129925621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0066;AVGPOST=0.9990;RSQ=0.9356;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129925623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129925661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8177;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129925711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9659;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129925793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0659;AVGPOST=0.9964;RSQ=0.9769;ERATE=0.0003;THETA=0.0007;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 129926005 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129926193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8065;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129926257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5332;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129926261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129926327 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4625;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0007;THETA=0.0004;AC=1010;AN=2184 GT:DS:GL:BD 0.46245420 0 1 129926338 . ACT A 954 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9993;RSQ=0.9574;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129926419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4550;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0006;THETA=0.0003;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 129926464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129926477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7654;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129926545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0056;AVGPOST=0.9974;RSQ=0.8205;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129926627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0089;AVGPOST=0.9983;RSQ=0.9154;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129926654 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9984;RSQ=0.9674;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129926657 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.920;LDAF=0.0226;AVGPOST=0.9937;RSQ=0.8919;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 129926747 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129926791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129926801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5109;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129926827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129926861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9366;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129926862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4546;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 129927016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0086;AVGPOST=0.9991;RSQ=0.9556;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129927089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129927193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7943;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129927211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6793;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129927229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4548;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 129927240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9985;RSQ=0.9364;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129927259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129927425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0302;AVGPOST=0.9990;RSQ=0.9869;ERATE=0.0004;THETA=0.0002;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 129927510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129927514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8125;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129927515 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129927535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.5612;AVGPOST=0.9923;RSQ=0.9888;ERATE=0.0012;THETA=0.0006;AC=1224;AN=2184 GT:DS:GL:BD 0.56043959 1 1 129927617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129927653 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0046;AVGPOST=0.9950;RSQ=0.5574;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129927685 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129927726 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1108;AVGPOST=0.9988;RSQ=0.9958;ERATE=0.0004;THETA=0.0010;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 129927832 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8633;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129927900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0082;AVGPOST=0.9973;RSQ=0.8727;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129927973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6928;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129928030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0004;THETA=0.0042;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129928031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0207;AVGPOST=0.9975;RSQ=0.9547;ERATE=0.0005;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129928091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2652;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 129928239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1070;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 129928324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5888;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928347 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.5672;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0004;THETA=0.0011;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 129928373 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928594 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9639;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129928820 . CA C 20 PASS INDEL;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0037;AVGPOST=0.9962;RSQ=0.6805;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129928827 . AC A 134 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0015;AVGPOST=0.9974;RSQ=0.2653;ERATE=0.0009;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129928850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4519;AVGPOST=0.9950;RSQ=0.9923;ERATE=0.0006;THETA=0.0008;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 129928851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7098;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129928963 . ATTCT A 1023 PASS INDEL;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0089;AVGPOST=0.9968;RSQ=0.8742;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129929064 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9985;RSQ=0.2868;ERATE=0.0005;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129929213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4562;AVGPOST=0.9952;RSQ=0.9921;ERATE=0.0009;THETA=0.0004;AC=996;AN=2184 GT:DS:GL:BD 0.45604396 0 1 129929237 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.3673;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5565;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9886;ERATE=0.0004;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129929599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9297;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129929623 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6211;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129929686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8262;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129929858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6516;ERATE=0.0003;THETA=0.0033;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129929939 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5797;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929941 . TC T 531 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9982;RSQ=0.8560;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129929951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5378;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929960 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129929972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0004;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129929978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1077;AVGPOST=0.9967;RSQ=0.9877;ERATE=0.0004;THETA=0.0007;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 129930098 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5710;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129930100 . TA T 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6314;ERATE=0.0009;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129930164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8347;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129930188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8886;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129930200 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5040;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129930211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4527;AVGPOST=0.9926;RSQ=0.9887;ERATE=0.0004;THETA=0.0005;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 129930217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0197;AVGPOST=0.9989;RSQ=0.9768;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129930251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.3535;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129930264 . TTTA T 139 PASS INDEL;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0044;AVGPOST=0.9963;RSQ=0.6726;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129930287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9051;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129930341 . CTG C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5235;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129930379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.2622;AVGPOST=0.9922;RSQ=0.9847;ERATE=0.0007;THETA=0.0018;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 129930398 . CCCTCGGTCA C 1787 PASS INDEL;BAVGPOST=0.995;BRSQ=0.829;LDAF=0.0186;AVGPOST=0.9966;RSQ=0.9292;ERATE=0.0005;THETA=0.0020;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129930432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.5999;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129930437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4554;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129930488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8419;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129930774 . GTC G 193 PASS INDEL;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.5741;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129930780 rs112024723 CGTT C 2095 PASS INDEL;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0166;AVGPOST=0.9993;RSQ=0.9818;ERATE=0.0003;THETA=0.0013;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129930865 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129930902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5928;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129930930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129930936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129930980 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8230;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129931024 . CA C 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129931055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5805;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129931117 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0004;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129931120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931152 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129931200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5875;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129931328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9201;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129931329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0188;AVGPOST=0.9981;RSQ=0.9629;ERATE=0.0004;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129931366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129931370 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0030;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129931405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931425 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931610 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6856;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8924;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129931660 . CAG C 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4440;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931682 . A AT 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5494;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129931851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8088;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129931932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0206;AVGPOST=0.9994;RSQ=0.9871;ERATE=0.0004;THETA=0.0029;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 129932050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9712;AVGPOST=0.9989;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 129932133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.9069;AVGPOST=0.9974;RSQ=0.9875;ERATE=0.0003;THETA=0.0007;AC=1982;AN=2184 GT:DS:GL:BD 0.90750915 1 1 129932146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9982;RSQ=0.9411;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129932183 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8722;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129932253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.8807;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129932319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0070;AVGPOST=0.9979;RSQ=0.8730;ERATE=0.0004;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129932368 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129932469 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0083;AVGPOST=0.9931;RSQ=0.6882;ERATE=0.0008;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129932514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129932592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0184;AVGPOST=0.9980;RSQ=0.9525;ERATE=0.0005;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129932700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0186;AVGPOST=0.9937;RSQ=0.8637;ERATE=0.0009;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129932711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0077;AVGPOST=0.9950;RSQ=0.7551;ERATE=0.0006;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129932716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6850;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129932813 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0072;AVGPOST=0.9971;RSQ=0.8530;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129932818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.942;LDAF=0.1219;AVGPOST=0.9945;RSQ=0.9823;ERATE=0.0003;THETA=0.0004;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 129933122 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933141 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7206;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129933150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129933246 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9968;RSQ=0.7530;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129933358 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933386 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9464;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129933390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129933543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129933559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5592;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129933687 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129933704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6022;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129933712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1610;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 129933761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4046;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6404;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129933959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0223;AVGPOST=0.9991;RSQ=0.9813;ERATE=0.0004;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 129934018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7531;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129934051 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6737;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129934161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5772;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129934242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.9911;AVGPOST=0.9963;RSQ=0.8319;ERATE=0.0010;THETA=0.0006;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 129934311 . AG A 948 PASS INDEL;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0175;AVGPOST=0.9973;RSQ=0.9327;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129934354 . TC T 963 PASS INDEL;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0173;AVGPOST=0.9971;RSQ=0.9300;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129934361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129934387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9352;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129934495 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8712;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129934516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8805;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129934558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9352;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129934680 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8431;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129934697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.8069;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129934803 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.951;LDAF=0.0436;AVGPOST=0.9953;RSQ=0.9554;ERATE=0.0005;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 129934828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2730;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129934835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0350;AVGPOST=0.9975;RSQ=0.9711;ERATE=0.0003;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 129934943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2163;AVGPOST=0.9965;RSQ=0.9906;ERATE=0.0008;THETA=0.0005;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 129934949 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8463;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129935113 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.8009;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129935178 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6127;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129935242 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7766;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129935297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7379;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129935394 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7454;ERATE=0.0015;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129935400 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7164;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129935551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129935611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5611;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129935691 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129935750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0047;AVGPOST=0.9953;RSQ=0.6304;ERATE=0.0015;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129935833 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9661;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129935869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5750;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129936020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8493;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129936059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129936072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8561;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129936139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8020;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129936168 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7168;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129936183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129936281 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0104;AVGPOST=0.9989;RSQ=0.9617;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129936284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8388;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129936308 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5778;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129936339 . A AG 4 PASS INDEL;BAVGPOST=0.998;BRSQ=0.376;LDAF=0.0049;AVGPOST=0.9936;RSQ=0.4738;ERATE=0.0012;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129936342 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0329;AVGPOST=0.9967;RSQ=0.9597;ERATE=0.0006;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 129936437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5462;AVGPOST=0.9947;RSQ=0.9911;ERATE=0.0004;THETA=0.0003;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 129936441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7055;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129936650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7945;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129936660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9499;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129936678 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129936817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0059;AVGPOST=0.9980;RSQ=0.8683;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129937036 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7248;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129937200 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8422;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129937220 . A AT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129937275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9122;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129937375 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6681;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129937426 . AAC A 41 PASS INDEL;BAVGPOST=0.996;BRSQ=0.646;LDAF=0.0135;AVGPOST=0.9844;RSQ=0.5613;ERATE=0.0034;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129937447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6128;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129937485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0135;AVGPOST=0.9980;RSQ=0.9489;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 129937663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129937782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5596;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129937830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7658;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129937865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7841;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129937980 . CTTG C 297 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9310;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129937994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9066;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129938115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.487;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5819;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129938117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129938189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.4233;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129938190 . C CACT 3196 PASS INDEL;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0180;AVGPOST=0.9992;RSQ=0.9807;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129938261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129938385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9020;ERATE=0.0005;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129938400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.2428;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129938419 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2294;AVGPOST=0.9977;RSQ=0.9946;ERATE=0.0004;THETA=0.0006;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 129938463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129938480 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5037;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129938501 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129938557 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6359;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129938589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0180;AVGPOST=0.9995;RSQ=0.9876;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129938605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6102;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129938733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7128;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129938788 . A AT 231 PASS INDEL;BAVGPOST=0.995;BRSQ=0.695;LDAF=0.0097;AVGPOST=0.9910;RSQ=0.6858;ERATE=0.0008;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129938891 . GAGGGA G 385 PASS INDEL;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0215;AVGPOST=0.9956;RSQ=0.9136;ERATE=0.0006;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129938965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.927;LDAF=0.2278;AVGPOST=0.9859;RSQ=0.9688;ERATE=0.0013;THETA=0.0003;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 129938969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.807;LDAF=0.0082;AVGPOST=0.9957;RSQ=0.7780;ERATE=0.0006;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129938982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9185;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129939002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4530;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129939072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9689;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129939209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0300;AVGPOST=0.9984;RSQ=0.9788;ERATE=0.0005;THETA=0.0011;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 129939298 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0187;AVGPOST=0.9991;RSQ=0.9812;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 129939393 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129939396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6651;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129939435 . CCTT C 2951 PASS INDEL;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0197;AVGPOST=0.9954;RSQ=0.9176;ERATE=0.0004;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129939462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.820;LDAF=0.0169;AVGPOST=0.9980;RSQ=0.9565;ERATE=0.0003;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129939510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129939588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6205;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129939921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129939932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0095;AVGPOST=0.9973;RSQ=0.8846;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129939933 . G GC 2702 PASS INDEL;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0177;AVGPOST=0.9978;RSQ=0.9601;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 129939973 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5004;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7132;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129940227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0175;AVGPOST=0.9986;RSQ=0.9678;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 129940254 . TG T 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0027;AVGPOST=0.9962;RSQ=0.4702;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129940257 . CAGA C 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.7260;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129940520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9977;RSQ=0.9169;ERATE=0.0005;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129940639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.879;LDAF=0.0270;AVGPOST=0.9971;RSQ=0.9536;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129940766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129940872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9980;RSQ=0.9759;ERATE=0.0003;THETA=0.0010;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 129940874 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 129940875 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9996;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129940898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129940941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8018;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129940942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6309;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129940952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129940975 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5705;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129941053 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4902;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129941108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7819;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129941476 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129941551 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3375;AVGPOST=0.9912;RSQ=0.9849;ERATE=0.0008;THETA=0.0005;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 129941571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5364;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129941795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0180;AVGPOST=0.9997;RSQ=0.9932;ERATE=0.0003;THETA=0.0011;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129941809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129941884 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9286;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129942063 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5156;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129942133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9781;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129942184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129942290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0118;AVGPOST=0.9980;RSQ=0.9427;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 129942315 . T TTA 78 PASS INDEL;BAVGPOST=0.996;BRSQ=0.468;LDAF=0.0047;AVGPOST=0.9951;RSQ=0.5824;ERATE=0.0007;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129942624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4088;AVGPOST=0.9977;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 129942798 . GGAA G 178 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8412;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129942932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4089;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 129942982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4083;AVGPOST=0.9984;RSQ=0.9979;ERATE=0.0004;THETA=0.0045;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 129942987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0531;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 129943036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4089;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0005;THETA=0.0005;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 129943174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4089;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 129943178 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129943237 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129943281 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129943286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4090;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0002;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 129943361 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4088;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0005;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 129943380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129943501 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9193;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129943756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129943770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4063;AVGPOST=0.9940;RSQ=0.9920;ERATE=0.0012;THETA=0.0003;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 129943777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129943826 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1613;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0022;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 129943898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1613;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 129943986 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8737;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129944015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4095;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 129944021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7290;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129944076 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4293;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 129944083 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7116;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129944162 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7969;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129944196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129944276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129944283 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8806;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129944504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129944584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0083;AVGPOST=0.9993;RSQ=0.9657;ERATE=0.0003;THETA=0.0047;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129944667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4087;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 129944785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8907;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129944788 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129944838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7238;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129944844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4082;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 129944948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4079;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0007;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 129945018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129945104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9516;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129945142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4088;AVGPOST=0.9979;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 129945149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9673;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129945159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4807;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 129945184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5419;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129945192 . A AG 4799 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0757;AVGPOST=0.9955;RSQ=0.9798;ERATE=0.0005;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 129945305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4808;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0004;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 129945478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2922;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 129945532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129945888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0765;AVGPOST=0.9988;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 129945991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6315;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129946017 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129946021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4809;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0006;THETA=0.0003;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 129946024 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129946044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4809;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0003;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 129946098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8054;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129946186 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129946211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129946264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5790;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129946420 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8823;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129946431 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0207;AVGPOST=0.9984;RSQ=0.9693;ERATE=0.0004;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 129946518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.9958;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0002;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 129946533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4625;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=1010;AN=2184 GT:DS:GL:BD 0.46245420 0 1 129946943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9430;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0009;AC=2059;AN=2184 GT:DS:GL:BD 0.94276559 1 1 129947090 rs77857197 C CTA 25655 PASS INDEL;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1704;AVGPOST=0.9952;RSQ=0.9867;ERATE=0.0007;THETA=0.0004;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 129947129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.795;LDAF=0.9196;AVGPOST=0.9674;RSQ=0.8341;ERATE=0.0089;THETA=0.0001;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 129947227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0131;AVGPOST=0.9989;RSQ=0.9657;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 129947243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129947335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0147;AVGPOST=0.9989;RSQ=0.9792;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 129947406 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9529;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129947425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129947447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129947510 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2474;AVGPOST=0.9960;RSQ=0.9923;ERATE=0.0008;THETA=0.0005;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 129947524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0411;AVGPOST=0.9978;RSQ=0.9788;ERATE=0.0005;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 129947558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129947704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3916;AVGPOST=0.9963;RSQ=0.9950;ERATE=0.0005;THETA=0.0006;AC=855;AN=2184 GT:DS:GL:BD 0.39148352 0 1 129947705 . A AG 408 PASS INDEL;BAVGPOST=0.961;BRSQ=0.730;LDAF=0.1397;AVGPOST=0.8604;RSQ=0.5463;ERATE=0.0100;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 129947868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129948095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9609;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129948105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9837;ERATE=0.0004;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 129948132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6536;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129948282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9671;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129948338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129948438 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129948467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129948472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8469;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129948513 . CAG C 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4265;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129948529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0216;AVGPOST=0.9992;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 129948539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129948631 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9722;ERATE=0.0004;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129948675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129948705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129948759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129948847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0119;AVGPOST=0.9984;RSQ=0.9490;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129949059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9834;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129949135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129949214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129949215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 129949263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129949328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9866;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129949429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0141;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 129949621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3901;AVGPOST=0.9976;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 129949708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129949810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0397;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 129949875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129949912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0553;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 129949945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129950069 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129950190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0402;AVGPOST=0.9998;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129950236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129950398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129950399 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9997;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129950406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129950422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129950468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129950563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129950605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129950630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0402;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129950721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0401;AVGPOST=0.9997;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129950929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129950991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129950995 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9414;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129951012 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0403;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129951049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0054;AVGPOST=0.9981;RSQ=0.8617;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129951052 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0404;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0004;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129951164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129951200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7676;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0973;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0009;THETA=0.0005;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 129951375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951411 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5206;AVGPOST=0.9958;RSQ=0.9940;ERATE=0.0006;THETA=0.0004;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 129951504 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0406;AVGPOST=0.9989;RSQ=0.9912;ERATE=0.0003;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129951521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0402;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129951612 . T TA 583 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0044;AVGPOST=0.9965;RSQ=0.6647;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129951633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8252;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129951823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3903;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 129951896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129951983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 129951995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952008 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129952062 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952077 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3903;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 129952161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129952248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129952329 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129952332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129952336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952343 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0899;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 129952345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129952633 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129952739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 129952771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7796;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129952799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9904;ERATE=0.0003;THETA=0.0001;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129952812 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5720;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 129952826 rs71575165 A ATCT 67742 PASS INDEL;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.4543;AVGPOST=0.9941;RSQ=0.9907;ERATE=0.0016;THETA=0.0010;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 129953026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8546;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129953056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0061;AVGPOST=0.9979;RSQ=0.8624;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129953159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129953162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9555;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129953222 . TTCTC T 1300 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0167;AVGPOST=0.9986;RSQ=0.9693;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 129953304 . TCTC T 937 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0188;AVGPOST=0.9984;RSQ=0.9635;ERATE=0.0005;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 129953317 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4729;AVGPOST=0.9860;RSQ=0.9827;ERATE=0.0009;THETA=0.0002;AC=1029;AN=2184 GT:DS:GL:BD 0.47115386 0 1 129953390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129953564 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6994;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129953565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3664;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0008;THETA=0.0002;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 129953695 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7220;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129953758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1607;AVGPOST=0.9985;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 129953796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0356;AVGPOST=0.9983;RSQ=0.9817;ERATE=0.0004;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 129953805 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129953868 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5618;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129953964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129954034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129954092 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9355;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129954162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9196;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129954393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129954415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7731;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129954543 . T TG 8809 PASS INDEL;BAVGPOST=0.822;BRSQ=0.665;LDAF=0.5441;AVGPOST=0.7918;RSQ=0.6641;ERATE=0.0952;THETA=0.0003;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 129954561 rs11369070 G GA 78424 PASS INDEL;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.7984;AVGPOST=0.9949;RSQ=0.9879;ERATE=0.0006;THETA=0.0003;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 129954562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7984;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129954583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3665;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0006;THETA=0.0003;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 129954646 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7647;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129954864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9986;RSQ=0.9322;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129955085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129955137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129955145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6768;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129955159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8018;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129955213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129955379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1985;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 129955388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9053;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129955428 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5636;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129955453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1215;AVGPOST=0.9971;RSQ=0.9903;ERATE=0.0004;THETA=0.0002;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 129955485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1618;AVGPOST=0.9988;RSQ=0.9964;ERATE=0.0005;THETA=0.0002;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 129955565 rs35058689 C CTG 56860 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3686;AVGPOST=0.9953;RSQ=0.9925;ERATE=0.0009;THETA=0.0003;AC=801;AN=2184 GT:DS:GL:BD 0.36675823 0 1 129955573 . A AT 2145 PASS INDEL;BAVGPOST=0.983;BRSQ=0.796;LDAF=0.0525;AVGPOST=0.9619;RSQ=0.7073;ERATE=0.0078;THETA=0.0004;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 129955641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0065;AVGPOST=0.9941;RSQ=0.6683;ERATE=0.0016;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129955644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8522;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129955665 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2056;AVGPOST=0.9974;RSQ=0.9929;ERATE=0.0008;THETA=0.0005;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 129955732 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3665;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0005;THETA=0.0002;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 129955785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1621;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0006;THETA=0.0007;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 129955830 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9980;RSQ=0.8912;ERATE=0.0005;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129955839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5312;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129955964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.965;LDAF=0.3557;AVGPOST=0.9820;RSQ=0.9717;ERATE=0.0030;THETA=0.0004;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 129956079 . ACTGC A 48 PASS INDEL;BAVGPOST=0.999;BRSQ=0.410;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6426;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129956091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7064;ERATE=0.0005;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129956094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129956228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0068;AVGPOST=0.9995;RSQ=0.9684;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129956255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3679;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 129956306 . CTT C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4905;ERATE=0.0005;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129956378 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6541;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129956529 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9730;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129956618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7803;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129956701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.3670;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0005;THETA=0.0002;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 129956769 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7267;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129956921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7999;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1747;AN=2184 GT:DS:GL:BD 0.79990840 1 1 129957025 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3621;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0003;AC=789;AN=2184 GT:DS:GL:BD 0.36126372 0 1 129957039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3678;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0006;THETA=0.0002;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 129957115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1181;AVGPOST=0.9988;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 129957146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129957379 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7391;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129957414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9429;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129957486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129957495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0241;AVGPOST=0.9985;RSQ=0.9757;ERATE=0.0004;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 129957606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3673;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 129957651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3671;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0002;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 129957680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.919;LDAF=0.0567;AVGPOST=0.9937;RSQ=0.9562;ERATE=0.0006;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 129957758 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129957805 . TC T 380 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0049;AVGPOST=0.9986;RSQ=0.9018;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129957869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9369;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129957897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129957944 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0103;AVGPOST=0.9977;RSQ=0.9159;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129957990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5085;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129958060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129958087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7644;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=1670;AN=2184 GT:DS:GL:BD 0.76465201 1 1 129958170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 129958240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0570;AVGPOST=0.9990;RSQ=0.9925;ERATE=0.0004;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 129958281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0567;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0011;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 129958453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7720;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129958546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.828;LDAF=0.0119;AVGPOST=0.9941;RSQ=0.8028;ERATE=0.0034;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129958561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129958562 . GCA G 132 PASS INDEL;BAVGPOST=0.984;BRSQ=0.703;LDAF=0.0309;AVGPOST=0.9724;RSQ=0.6182;ERATE=0.0193;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 129958574 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129958655 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2613;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129958663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129958675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8316;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129958689 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0659;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 129958826 . CCCCT C 202 PASS INDEL;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9392;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129958907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129959003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129959030 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0083;AVGPOST=0.9993;RSQ=0.9699;ERATE=0.0003;THETA=0.0046;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129959056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129959079 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4902;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 129959111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9759;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129959141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3820;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 129959181 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129959222 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129959293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0099;AVGPOST=0.9987;RSQ=0.9575;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129959315 . GTTC G 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129959326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9996;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129959367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0558;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 129959391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9658;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129959410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129959417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0669;AVGPOST=0.9971;RSQ=0.9814;ERATE=0.0004;THETA=0.0002;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 129959460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5050;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129959466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129959503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0558;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 129959520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129959733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129959757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.8172;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129959789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.973;LDAF=0.0197;AVGPOST=0.9973;RSQ=0.9518;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129959812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9604;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129959857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0493;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0002;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 129959911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6356;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129960071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9997;RSQ=0.9880;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 129960197 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129960298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0330;AVGPOST=0.9988;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 129960354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129960381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6093;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 129960411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5448;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129960580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129960654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0320;AVGPOST=0.9986;RSQ=0.9847;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 129960725 MERGED_DEL_2_4698 TACAAAAAATTAGCTGGGTGTAGGGGTGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGAAGGGGAATCGTTTGAACCCTGGAGGCAGAGGTTGCAATGAGCCGAAATCACATTACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAATAAATAAATAAATCAAATACTTAGCATAG T . . SV;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9278;ERATE=0.0003;THETA=0.0003;CIEND=-79;74;CIPOS=-101;56;END=111934824;HOMLEN=1;HOMSEQ=A;SOURCE=BreakDancer_111928793_111934800 GT:DS:GL:BD 0.00366300 0 1 129960844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.916;LDAF=0.0478;AVGPOST=0.9939;RSQ=0.9489;ERATE=0.0007;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 129960865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129960935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4352;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129960979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6550;ERATE=0.0007;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129961018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.7237;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129961133 . C CA 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129961162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9410;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129961254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3962;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 129961312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129961368 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9619;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129961516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9718;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129961587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3856;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 129961601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9136;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129961655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129961711 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6154;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0006;THETA=0.0005;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 129961797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129961841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5799;AVGPOST=0.9987;RSQ=0.9982;ERATE=0.0003;THETA=0.0010;AC=1268;AN=2184 GT:DS:GL:BD 0.58058608 1 1 129961957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129961959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129961961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129961989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7530;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129962038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129962113 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3951;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=863;AN=2184 GT:DS:GL:BD 0.39514652 0 1 129962207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.529;LDAF=0.0035;AVGPOST=0.9964;RSQ=0.5994;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129962430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6368;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129962502 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0126;AVGPOST=0.9972;RSQ=0.9149;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129962547 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0043;AVGPOST=0.9949;RSQ=0.5796;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129962581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.694;LDAF=0.0041;AVGPOST=0.9968;RSQ=0.6871;ERATE=0.0005;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129962632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129962638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0463;AVGPOST=0.9988;RSQ=0.9891;ERATE=0.0004;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 129962651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.694;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6958;ERATE=0.0005;THETA=0.0035;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129962691 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7390;AVGPOST=0.9913;RSQ=0.9841;ERATE=0.0005;THETA=0.0004;AC=1616;AN=2184 GT:DS:GL:BD 0.73992676 1 1 129962714 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0810;AVGPOST=0.9979;RSQ=0.9903;ERATE=0.0003;THETA=0.0065;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 129962725 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129962758 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6092;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129962780 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8653;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129962860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0441;AVGPOST=0.9988;RSQ=0.9896;ERATE=0.0003;THETA=0.0008;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 129962887 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129962908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129962928 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.5231;AVGPOST=0.9935;RSQ=0.9889;ERATE=0.0011;THETA=0.0004;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 129962978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.4539;AVGPOST=0.9964;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 129963005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8671;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129963209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5979;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129963352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129963375 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9879;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129963566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7304;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129963605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129963703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129963742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129963800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5251;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 129963995 . T TA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7070;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129964029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129964062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129964071 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7993;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129964167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5872;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129964177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129964184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7042;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129964198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.4800;AVGPOST=0.9915;RSQ=0.9873;ERATE=0.0013;THETA=0.0006;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 129964312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5324;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129964418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.6695;ERATE=0.0014;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129964435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4799;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 129964538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129964657 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8202;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129964748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0325;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 129964764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9305;AVGPOST=0.9992;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 129964810 . G GT 3004 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0335;AVGPOST=0.9976;RSQ=0.9740;ERATE=0.0004;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 129965061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8261;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129965075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129965078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2854;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 129965091 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8051;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129965093 . G GA 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6525;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965131 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5243;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0005;THETA=0.0005;AC=1143;AN=2184 GT:DS:GL:BD 0.52335167 1 1 129965197 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129965224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8084;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129965247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8394;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7106;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965360 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7858;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965411 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129965421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 129965484 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4568;AVGPOST=0.9968;RSQ=0.9959;ERATE=0.0003;THETA=0.0009;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 129965501 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6060;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129965643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129965798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9394;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129965804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6284;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129965847 rs71704934 T TG 441 PASS INDEL;BAVGPOST=0.991;BRSQ=0.704;LDAF=0.0135;AVGPOST=0.9914;RSQ=0.7521;ERATE=0.0007;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129965868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.963;LDAF=0.2350;AVGPOST=0.9877;RSQ=0.9777;ERATE=0.0012;THETA=0.0006;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 129965888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9215;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129966055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7106;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129966070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129966191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0196;AVGPOST=0.9977;RSQ=0.9505;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 129966293 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8199;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129966312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129966324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129966333 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5232;AVGPOST=0.9943;RSQ=0.9901;ERATE=0.0008;THETA=0.0005;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 129966391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.741;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7239;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129966432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5584;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129966515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5229;AVGPOST=0.9947;RSQ=0.9909;ERATE=0.0007;THETA=0.0004;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 129966676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0032;AVGPOST=0.9961;RSQ=0.4836;ERATE=0.0008;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129966741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9095;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129966925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.492;LDAF=0.0044;AVGPOST=0.9951;RSQ=0.5759;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129966926 rs35522134 T TA 99 PASS INDEL;BAVGPOST=0.626;BRSQ=0.092;LDAF=0.2235;AVGPOST=0.7321;RSQ=0.3749;ERATE=0.0110;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 129966945 . TCA T 117 PASS INDEL;BAVGPOST=0.983;BRSQ=0.596;LDAF=0.0373;AVGPOST=0.9537;RSQ=0.4770;ERATE=0.0138;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 129967020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967070 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.852;LDAF=0.0191;AVGPOST=0.9915;RSQ=0.8262;ERATE=0.0009;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129967078 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9982;RSQ=0.2779;ERATE=0.0005;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129967225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129967249 . TGAA T 150 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6880;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967277 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4806;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 129967289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9189;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129967361 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0037;AVGPOST=0.9948;RSQ=0.4207;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129967401 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7684;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4803;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 129967478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.724;LDAF=0.0075;AVGPOST=0.9946;RSQ=0.7117;ERATE=0.0017;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129967755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6048;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 129967793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6814;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.943;LDAF=0.4746;AVGPOST=0.9447;RSQ=0.9250;ERATE=0.0074;THETA=0.0005;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 129967917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.884;LDAF=0.2603;AVGPOST=0.9665;RSQ=0.9481;ERATE=0.0007;THETA=0.0003;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 129967920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0022;AVGPOST=0.9969;RSQ=0.4360;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129967952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.688;LDAF=0.6867;AVGPOST=0.8253;RSQ=0.7099;ERATE=0.0115;THETA=0.0004;AC=1582;AN=2184 GT:DS:GL:BD 0.72435898 1 1 129968079 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6636;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129968270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7762;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129968744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.853;LDAF=0.2901;AVGPOST=0.8922;RSQ=0.8217;ERATE=0.0330;THETA=0.0006;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 129968745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0409;AVGPOST=0.9957;RSQ=0.9565;ERATE=0.0006;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 129968755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.639;LDAF=0.0263;AVGPOST=0.9762;RSQ=0.6341;ERATE=0.0012;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129968834 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.902;LDAF=0.1634;AVGPOST=0.9880;RSQ=0.9661;ERATE=0.0010;THETA=0.0009;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 129968915 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.765;LDAF=0.1726;AVGPOST=0.9159;RSQ=0.8337;ERATE=0.0007;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 129969098 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.903;BRSQ=0.763;LDAF=0.1761;AVGPOST=0.9203;RSQ=0.8458;ERATE=0.0004;THETA=0.0003;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 129969101 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.766;LDAF=0.1836;AVGPOST=0.9144;RSQ=0.8372;ERATE=0.0024;THETA=0.0006;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 129969106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7280;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129969275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0144;AVGPOST=0.9987;RSQ=0.9627;ERATE=0.0005;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 129969426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0068;AVGPOST=0.9981;RSQ=0.8940;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129969627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129969658 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.834;LDAF=0.0119;AVGPOST=0.9945;RSQ=0.8428;ERATE=0.0010;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 129969686 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.610;LDAF=0.0158;AVGPOST=0.9794;RSQ=0.4968;ERATE=0.0047;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129969695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4786;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129969739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.569;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4176;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129969740 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129969812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0092;AVGPOST=0.9983;RSQ=0.9266;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129969817 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2659;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 129969853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7952;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 129969900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0075;AVGPOST=0.9991;RSQ=0.9490;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129970050 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129970119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2667;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 129970184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3190;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0005;THETA=0.0006;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 129970253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129970370 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7457;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129970441 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7215;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129970467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8746;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129970544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129970643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9068;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129970650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129970757 rs60186333 C CA 2559 PASS INDEL;BAVGPOST=0.667;BRSQ=0.409;LDAF=0.4740;AVGPOST=0.6868;RSQ=0.4735;ERATE=0.0363;THETA=0.0016;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 129970916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129971093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129971239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129971277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7855;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129971284 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129971431 . AAG A 268 PASS INDEL;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8948;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129971561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0076;AVGPOST=0.9991;RSQ=0.9465;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129971631 . TA T 1504 PASS INDEL;BAVGPOST=0.992;BRSQ=0.797;LDAF=0.0194;AVGPOST=0.9932;RSQ=0.8669;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 129971858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129971902 . GA G 769 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0140;AVGPOST=0.9987;RSQ=0.9595;ERATE=0.0005;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129971955 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0116;AVGPOST=0.9982;RSQ=0.9355;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129971966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5632;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129972007 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4414;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129972345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129972351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129972376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129972451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6632;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129972491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9203;ERATE=0.0003;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129972612 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0191;AVGPOST=0.9993;RSQ=0.9837;ERATE=0.0004;THETA=0.0008;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129972631 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129972642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6450;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129972702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2029;AVGPOST=0.9936;RSQ=0.9864;ERATE=0.0007;THETA=0.0004;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 129972759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4993;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129972801 . TA T 75 PASS INDEL;BAVGPOST=0.995;BRSQ=0.744;LDAF=0.0164;AVGPOST=0.9845;RSQ=0.6432;ERATE=0.0013;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129972855 . A ATT 653 PASS INDEL;BAVGPOST=0.991;BRSQ=0.655;LDAF=0.0307;AVGPOST=0.9725;RSQ=0.6367;ERATE=0.0026;THETA=0.0008;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 129972856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129973162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2001;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0002;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 129973169 . GCA G 340 PASS INDEL;BAVGPOST=0.980;BRSQ=0.664;LDAF=0.0472;AVGPOST=0.9525;RSQ=0.5736;ERATE=0.0226;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 129973312 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0121;AVGPOST=0.9990;RSQ=0.9675;ERATE=0.0003;THETA=0.0042;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 129973382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8286;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129973462 rs57487312 TTG T 23826 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1999;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0005;THETA=0.0009;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 129973623 . G GTGC 538 PASS INDEL;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0042;AVGPOST=0.9985;RSQ=0.8537;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129973655 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0297;AVGPOST=0.9989;RSQ=0.9848;ERATE=0.0003;THETA=0.0002;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 129973758 . TA T 7620 PASS INDEL;BAVGPOST=0.967;BRSQ=0.892;LDAF=0.1569;AVGPOST=0.9832;RSQ=0.9544;ERATE=0.0005;THETA=0.0006;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 129973774 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.883;LDAF=0.1633;AVGPOST=0.9705;RSQ=0.9223;ERATE=0.0032;THETA=0.0005;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 129973775 . T TTTA 486 PASS INDEL;BAVGPOST=0.974;BRSQ=0.503;LDAF=0.0393;AVGPOST=0.9518;RSQ=0.5208;ERATE=0.0049;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 129973776 . T TA 117 PASS INDEL;BAVGPOST=0.996;BRSQ=0.825;LDAF=0.0087;AVGPOST=0.9938;RSQ=0.7294;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129973778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.833;LDAF=0.0183;AVGPOST=0.9885;RSQ=0.7510;ERATE=0.0023;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 129973779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0076;AVGPOST=0.9955;RSQ=0.7587;ERATE=0.0008;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 129973793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0036;AVGPOST=0.9971;RSQ=0.6630;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129973828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6285;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129973857 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0550;AVGPOST=0.9962;RSQ=0.9650;ERATE=0.0005;THETA=0.0013;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 129973957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2120;AVGPOST=0.9962;RSQ=0.9913;ERATE=0.0005;THETA=0.0005;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 129974074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129974110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4573;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129974146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8450;ERATE=0.0002;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129974152 . T TA 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6545;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129974208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0189;AVGPOST=0.9982;RSQ=0.9580;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129974255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.6699;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129974280 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0266;AVGPOST=0.9993;RSQ=0.9881;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 129974313 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8571;ERATE=0.0004;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129974316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.965;LDAF=0.1990;AVGPOST=0.9933;RSQ=0.9855;ERATE=0.0010;THETA=0.0011;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 129974342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5623;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129974349 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0101;AVGPOST=0.9986;RSQ=0.9483;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129974383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4832;AVGPOST=0.9923;RSQ=0.9876;ERATE=0.0012;THETA=0.0005;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 129974461 . CA C 67 PASS INDEL;BAVGPOST=0.997;BRSQ=0.738;LDAF=0.0088;AVGPOST=0.9977;RSQ=0.8875;ERATE=0.0005;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129974608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9475;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129974707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7952;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129974875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129975186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0002;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 129975225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5423;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0002;THETA=0.0009;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 129975238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7757;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129975698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0473;AVGPOST=0.9971;RSQ=0.9760;ERATE=0.0003;THETA=0.0049;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 129975744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129975824 . ACGTT A 102 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6009;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129975941 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7938;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129975946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0414;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0004;THETA=0.0006;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 129975970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129976006 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.7012;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129976045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129976185 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0276;AVGPOST=0.9997;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 129976275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9652;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129976354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7539;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129976420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5394;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129976493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0088;AVGPOST=0.9983;RSQ=0.9259;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129976535 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129976589 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8288;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129976777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8333;ERATE=0.0002;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129976871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9998;RSQ=0.9889;ERATE=0.0002;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129976896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6066;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129976974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129976995 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8134;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129977007 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5800;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129977034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8371;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129977153 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5673;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129977281 rs111244401 A AC 5817 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0286;AVGPOST=0.9994;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 129977286 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0288;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 129977393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129977434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0412;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0002;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 129977444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1996;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 129977524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129977550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129977556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129977667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 129977735 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129977975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9989;RSQ=0.0577;ERATE=0.0005;THETA=0.0007;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 129978061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.8067;AVGPOST=0.9974;RSQ=0.9939;ERATE=0.0007;THETA=0.0004;AC=1763;AN=2184 GT:DS:GL:BD 0.80723441 1 1 129978072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129978087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978473 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978478 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4800;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8439;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129978497 . A AT 6 PASS INDEL;BAVGPOST=0.998;BRSQ=0.396;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6316;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129978537 . T TA 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.488;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129978538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129978850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1337;AVGPOST=0.9968;RSQ=0.9882;ERATE=0.0006;THETA=0.0007;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 129978863 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.647;LDAF=0.0065;AVGPOST=0.9940;RSQ=0.6264;ERATE=0.0006;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129978900 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9432;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129979053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.899;LDAF=0.8317;AVGPOST=0.9431;RSQ=0.8558;ERATE=0.0122;THETA=0.0005;AC=1852;AN=2184 GT:DS:GL:BD 0.84798533 1 1 129979180 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129979317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0590;AVGPOST=0.9968;RSQ=0.9769;ERATE=0.0004;THETA=0.0001;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 129979530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7585;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129979583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7529;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129979632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129979764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6279;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129979780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.800;LDAF=0.0098;AVGPOST=0.9964;RSQ=0.8480;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129979913 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8473;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129979984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980064 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.6072;AVGPOST=0.9949;RSQ=0.9931;ERATE=0.0011;THETA=0.0006;AC=1328;AN=2184 GT:DS:GL:BD 0.60805863 1 1 129980124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6825;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5810;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129980275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6570;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129980478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0460;AVGPOST=0.9990;RSQ=0.9904;ERATE=0.0003;THETA=0.0010;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 129980552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6780;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7177;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980708 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7708;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129980749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6687;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129980797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129980826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1350;AVGPOST=0.9983;RSQ=0.9940;ERATE=0.0006;THETA=0.0003;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 129980895 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6108;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129980901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129980910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129980911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3847;ERATE=0.0009;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129980920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129981027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6589;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129981049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8246;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129981074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8610;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129981127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.956;LDAF=0.1317;AVGPOST=0.9957;RSQ=0.9857;ERATE=0.0003;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 129981160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.981;LDAF=0.3846;AVGPOST=0.9943;RSQ=0.9923;ERATE=0.0006;THETA=0.0005;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 129981165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9514;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129981166 . CT C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129981265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3332;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0005;THETA=0.0006;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 129981342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0543;AVGPOST=0.9993;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 129981343 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9727;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129981372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.6907;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129981442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129981443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4346;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129981475 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0196;AVGPOST=0.9991;RSQ=0.9801;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129981620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129981650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6376;ERATE=0.0023;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129981860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.1351;AVGPOST=0.9951;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 129981879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6536;ERATE=0.0006;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129981880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.988;LDAF=0.3883;AVGPOST=0.9961;RSQ=0.9947;ERATE=0.0005;THETA=0.0008;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 129981886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9989;RSQ=0.9513;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129981918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129982006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0160;AVGPOST=0.9976;RSQ=0.9513;ERATE=0.0004;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 129982074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6513;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129982115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.690;LDAF=0.0092;AVGPOST=0.9955;RSQ=0.7980;ERATE=0.0006;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129982239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.3800;AVGPOST=0.9966;RSQ=0.9953;ERATE=0.0005;THETA=0.0008;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 129982362 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3801;AVGPOST=0.9962;RSQ=0.9947;ERATE=0.0006;THETA=0.0003;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 129982364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9896;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129982447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5485;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129982555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0285;AVGPOST=0.9978;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 129982640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0463;AVGPOST=0.9996;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 129982723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129982847 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0144;AVGPOST=0.9979;RSQ=0.9420;ERATE=0.0003;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 129982907 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129983082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129983105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129983141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5608;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129983182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0216;AVGPOST=0.9993;RSQ=0.9860;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 129983183 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0382;AVGPOST=0.9994;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 129983214 . C CT 116 PASS INDEL;BAVGPOST=0.983;BRSQ=0.528;LDAF=0.0280;AVGPOST=0.9645;RSQ=0.4895;ERATE=0.0074;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 129983227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7789;ERATE=0.0003;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129983407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.926;LDAF=0.0368;AVGPOST=0.9977;RSQ=0.9771;ERATE=0.0003;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 129983469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.923;LDAF=0.0383;AVGPOST=0.9947;RSQ=0.9542;ERATE=0.0004;THETA=0.0020;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 129983472 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0073;AVGPOST=0.9945;RSQ=0.7099;ERATE=0.0006;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129983500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0385;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0003;THETA=0.0012;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 129983518 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.648;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7441;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129983639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.6186;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129983648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0596;AVGPOST=0.9958;RSQ=0.9749;ERATE=0.0008;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 129983700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0038;AVGPOST=0.9938;RSQ=0.3570;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129983730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0374;AVGPOST=0.9981;RSQ=0.9847;ERATE=0.0003;THETA=0.0009;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 129983745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0082;AVGPOST=0.9964;RSQ=0.8563;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 129983758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.333;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.2972;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129983830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7091;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129983923 . TG T 390 PASS INDEL;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0066;AVGPOST=0.9973;RSQ=0.8400;ERATE=0.0005;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129984012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0602;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0004;THETA=0.0012;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 129984034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9154;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129984081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129984112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4727;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129984205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8496;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129984346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129984431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8483;ERATE=0.0004;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129984449 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129984455 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129984595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129984701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8556;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129984730 . G GC 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6184;ERATE=0.0004;THETA=0.0071;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129984760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129984776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129984786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0060;AVGPOST=0.9967;RSQ=0.7873;ERATE=0.0011;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129984821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9576;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129985075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129985150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9738;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129985371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8085;ERATE=0.0004;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129985456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0115;AVGPOST=0.9959;RSQ=0.8599;ERATE=0.0005;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129985506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129985529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7196;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129985553 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129985722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129985777 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9177;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129985896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0003;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129985949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9989;RSQ=0.9925;ERATE=0.0004;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 129985970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129985992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129986016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129986218 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5515;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129986262 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0224;AVGPOST=0.9986;RSQ=0.9736;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 129986365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0551;AVGPOST=0.9993;RSQ=0.9939;ERATE=0.0005;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 129986404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9866;ERATE=0.0003;THETA=0.0014;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 129986529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129986818 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8312;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129986978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4912;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129987085 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0058;AVGPOST=0.9982;RSQ=0.8684;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129987140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129987326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7250;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129987406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8171;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129987413 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.8970;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129987432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8295;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129987461 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0546;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0008;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 129987488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0544;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0011;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 129987602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6630;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129987607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6934;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129987616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129987621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6824;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129987749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0517;AVGPOST=0.9978;RSQ=0.9852;ERATE=0.0004;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 129987798 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6365;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129987949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9623;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129988098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129988104 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4772;AVGPOST=0.9958;RSQ=0.9940;ERATE=0.0008;THETA=0.0003;AC=1043;AN=2184 GT:DS:GL:BD 0.47756410 0 1 129988283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129988301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9594;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129988329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5706;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129988456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6237;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129988458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7213;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129988463 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129988563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0002;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129988583 . T TA 30 PASS INDEL;BAVGPOST=0.998;BRSQ=0.607;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7509;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129988600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0337;AVGPOST=0.9990;RSQ=0.9873;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 129988702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129988759 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6564;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129988760 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129988819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0535;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 129988856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129988899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0112;AVGPOST=0.9991;RSQ=0.9716;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 129988969 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8416;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129989017 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0108;AVGPOST=0.9996;RSQ=0.9863;ERATE=0.0002;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129989138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7238;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129989345 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 129989380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129989411 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129989504 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129989696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129989717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3496;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 129989719 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0356;AVGPOST=0.9981;RSQ=0.9770;ERATE=0.0002;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 129989768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 129989805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0535;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0036;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 129990036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5517;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0007;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 129990119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129990192 . CT C 4440 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0249;AVGPOST=0.9983;RSQ=0.9758;ERATE=0.0006;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 129990232 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4928;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129990341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9009;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129990475 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129990500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9992;RSQ=0.9848;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 129990627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.8470;AVGPOST=0.9984;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=1851;AN=2184 GT:DS:GL:BD 0.84752744 1 1 129990648 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5229;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129990664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.8404;AVGPOST=0.9962;RSQ=0.9898;ERATE=0.0007;THETA=0.0041;AC=1836;AN=2184 GT:DS:GL:BD 0.84065932 1 1 129990798 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3590;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0005;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 129990944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129990981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0206;AVGPOST=0.9994;RSQ=0.9884;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 129991195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6749;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129991308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129991319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5574;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129991342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0269;AVGPOST=0.9984;RSQ=0.9777;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129991359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0002;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129991378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0108;AVGPOST=0.9983;RSQ=0.9373;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129991441 . T TG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.5989;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129991472 . CG C 94 PASS INDEL;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5973;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129991486 . GA G 66 PASS INDEL;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5093;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129991522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129991529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8337;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129991575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7908;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129991737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8395;AVGPOST=0.9979;RSQ=0.9935;ERATE=0.0006;THETA=0.0002;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 129991741 . GAC G 830 PASS INDEL;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0086;AVGPOST=0.9986;RSQ=0.9318;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129991895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5754;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129991955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7873;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129991964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.8770;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129991972 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9700;ERATE=0.0002;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129991980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8394;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129991986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8405;AVGPOST=0.9994;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=1836;AN=2184 GT:DS:GL:BD 0.84065932 1 1 129992039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129992040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8148;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129992099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8503;ERATE=0.0003;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129992149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129992221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7798;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129992236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0523;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 129992286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.8976;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129992301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9450;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129992311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129992396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0047;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 129992411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9988;RSQ=0.9616;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 129992417 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.836;LDAF=0.0983;AVGPOST=0.9388;RSQ=0.7626;ERATE=0.0142;THETA=0.0004;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 129992497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9114;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129992696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7190;ERATE=0.0002;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129992710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.4199;AVGPOST=0.9944;RSQ=0.9906;ERATE=0.0008;THETA=0.0003;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 129992720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7456;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129992784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129992823 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129992827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0097;AVGPOST=0.9984;RSQ=0.9272;ERATE=0.0005;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129993000 . TAAC T 828 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9452;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129993082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.801;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9233;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129993102 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129993149 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.9913;AVGPOST=0.9952;RSQ=0.8131;ERATE=0.0003;THETA=0.0006;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 129993252 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993283 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129993389 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993396 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7732;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129993642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6844;ERATE=0.0006;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129993746 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129993819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129993866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129993890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 129993912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9821;ERATE=0.0002;THETA=0.0011;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 129994004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129994118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129994154 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129994161 . GA G 132 PASS INDEL;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6864;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129994182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0114;AVGPOST=0.9973;RSQ=0.9088;ERATE=0.0005;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 129994189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994201 . T TTGTC 3130 PASS INDEL;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0105;AVGPOST=0.9980;RSQ=0.9167;ERATE=0.0006;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129994240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9994;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129994341 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6258;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129994360 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6661;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994363 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994374 . G GA 262 PASS INDEL;BAVGPOST=0.986;BRSQ=0.619;LDAF=0.0409;AVGPOST=0.9466;RSQ=0.4678;ERATE=0.0116;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 129994435 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8041;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129994643 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129994783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0087;AVGPOST=0.9993;RSQ=0.9685;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 129994855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9404;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129994918 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.643;LDAF=0.0042;AVGPOST=0.9963;RSQ=0.6268;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129995029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4930;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129995041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7219;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129995128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4365;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129995168 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129995214 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129995309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9989;RSQ=0.9558;ERATE=0.0003;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129995335 . G GA 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5727;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129995335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8083;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129995392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8317;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129995406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5771;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129995417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5073;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129995494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129995538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 129995546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0055;AVGPOST=0.9974;RSQ=0.8302;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 129995564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9993;RSQ=0.9679;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 129995592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.7001;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129995861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.672;LDAF=0.0031;AVGPOST=0.9968;RSQ=0.6294;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129996208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0079;AVGPOST=0.9976;RSQ=0.8709;ERATE=0.0005;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129996209 . CA C 319 PASS INDEL;BAVGPOST=0.953;BRSQ=0.521;LDAF=0.0736;AVGPOST=0.9159;RSQ=0.5023;ERATE=0.0299;THETA=0.0006;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 129996267 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.887;LDAF=0.0305;AVGPOST=0.9903;RSQ=0.8775;ERATE=0.0031;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 129996270 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9147;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 129996273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7255;AVGPOST=0.9943;RSQ=0.9901;ERATE=0.0004;THETA=0.0007;AC=1587;AN=2184 GT:DS:GL:BD 0.72664833 1 1 129996315 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9624;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129996319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0691;AVGPOST=0.9971;RSQ=0.9814;ERATE=0.0004;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 129996453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7359;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129996521 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0077;AVGPOST=0.9987;RSQ=0.9307;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129996673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7973;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129996745 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9432;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129996806 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 129996889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9755;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129996928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0188;AVGPOST=0.9990;RSQ=0.9807;ERATE=0.0003;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 129996941 . T TA 390 PASS INDEL;BAVGPOST=0.994;BRSQ=0.654;LDAF=0.0133;AVGPOST=0.9893;RSQ=0.6833;ERATE=0.0017;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129996950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7460;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129996970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129997081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.1244;AVGPOST=0.9964;RSQ=0.9876;ERATE=0.0003;THETA=0.0011;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 129997087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6062;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129997197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6653;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129997307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129997333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5843;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129997343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8802;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129997497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9634;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 129997507 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0230;AVGPOST=0.9991;RSQ=0.9832;ERATE=0.0004;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 129997555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129997562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8331;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129997590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8163;ERATE=0.0002;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129997603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129997609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9116;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 129997643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7070;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129997753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7707;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129997780 . A AT 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5044;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129997907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129997955 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8462;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129998009 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7588;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129998013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9324;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 129998145 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129998194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1201;AVGPOST=0.9979;RSQ=0.9928;ERATE=0.0004;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 129998409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129998415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8986;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129998452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129998468 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5187;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129998531 . T TC 55 PASS INDEL;BAVGPOST=0.996;BRSQ=0.691;LDAF=0.0080;AVGPOST=0.9919;RSQ=0.5950;ERATE=0.0034;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 129998801 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1240;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0006;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 129998850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0004;THETA=0.0013;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 129998866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.817;LDAF=0.0150;AVGPOST=0.9920;RSQ=0.8276;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 129999001 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129999020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129999021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7695;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129999117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129999120 . A ACT 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4787;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129999131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 129999429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 129999506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0987;AVGPOST=0.9943;RSQ=0.9792;ERATE=0.0005;THETA=0.0005;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 129999510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7177;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129999615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1195;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 129999643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8400;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129999687 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6165;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129999690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 129999702 . T TA 124 PASS INDEL;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7802;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 129999757 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1198;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 129999770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129999820 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8982;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 129999829 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 129999942 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9251;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 129999963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.951;LDAF=0.0732;AVGPOST=0.9897;RSQ=0.9512;ERATE=0.0004;THETA=0.0007;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 129999992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0065;AVGPOST=0.9949;RSQ=0.6789;ERATE=0.0006;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130000019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0582;AVGPOST=0.9962;RSQ=0.9722;ERATE=0.0004;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130000031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0601;AVGPOST=0.9941;RSQ=0.9595;ERATE=0.0004;THETA=0.0005;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130000033 . TAC T 11249 PASS INDEL;BAVGPOST=0.989;BRSQ=0.724;LDAF=0.9544;AVGPOST=0.9428;RSQ=0.4864;ERATE=0.0038;THETA=0.0003;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 130000035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.652;LDAF=0.0069;AVGPOST=0.9935;RSQ=0.6207;ERATE=0.0010;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130000048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5071;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130000212 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8093;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130000366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8923;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130000375 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130000635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130000707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7848;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130000721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7285;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130000826 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130001052 . A AT 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130001090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5931;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130001404 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130001506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.887;LDAF=0.0395;AVGPOST=0.9860;RSQ=0.8594;ERATE=0.0006;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 130001596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0342;AVGPOST=0.9982;RSQ=0.9775;ERATE=0.0004;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130001650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130001817 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7254;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130001873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7553;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130001879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1191;AVGPOST=0.9987;RSQ=0.9950;ERATE=0.0003;THETA=0.0006;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 130001974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.958;LDAF=0.0991;AVGPOST=0.9971;RSQ=0.9883;ERATE=0.0003;THETA=0.0010;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 130001979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7912;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130001988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0155;AVGPOST=0.9977;RSQ=0.9426;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130002084 rs67667309 TG T 17383 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1197;AVGPOST=0.9985;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 130002119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5439;AVGPOST=0.9979;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 130002209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130002226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130002240 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8755;AVGPOST=0.9984;RSQ=0.9942;ERATE=0.0004;THETA=0.0002;AC=1912;AN=2184 GT:DS:GL:BD 0.87545788 1 1 130002382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0149;AVGPOST=0.9991;RSQ=0.9811;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130002425 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130002440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7014;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130002545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.725;LDAF=0.0296;AVGPOST=0.9760;RSQ=0.6833;ERATE=0.0080;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130002598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.983;LDAF=0.5325;AVGPOST=0.9835;RSQ=0.9807;ERATE=0.0051;THETA=0.0006;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 130002652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130002692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.9959;AVGPOST=0.9989;RSQ=0.8788;ERATE=0.0003;THETA=0.0008;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 130002730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0671;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 130002787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130002899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.522;LDAF=0.0054;AVGPOST=0.9967;RSQ=0.7375;ERATE=0.0006;THETA=0.0074;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130002947 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6015;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130003283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.957;LDAF=0.3032;AVGPOST=0.9757;RSQ=0.9607;ERATE=0.0015;THETA=0.0018;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 130004055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.690;LDAF=0.1086;AVGPOST=0.9305;RSQ=0.6846;ERATE=0.0175;THETA=0.0014;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130004216 . T TG 25 PASS INDEL;BAVGPOST=0.975;BRSQ=0.139;LDAF=0.0625;AVGPOST=0.8959;RSQ=0.2534;ERATE=0.0072;THETA=0.0092;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130004647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.741;LDAF=0.0251;AVGPOST=0.9910;RSQ=0.8485;ERATE=0.0008;THETA=0.0013;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130005013 . TATA T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130005359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5270;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130005733 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0005;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130005804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.992;LDAF=0.3112;AVGPOST=0.9899;RSQ=0.9840;ERATE=0.0004;THETA=0.0005;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 130005823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6428;ERATE=0.0007;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130007221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0228;AVGPOST=0.9989;RSQ=0.9783;ERATE=0.0005;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130007344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.925;LDAF=0.0227;AVGPOST=0.9953;RSQ=0.9317;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130007350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7987;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130007406 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0126;AVGPOST=0.9967;RSQ=0.9091;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130007532 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130007536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130007571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130007701 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130007898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130007994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8812;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130008013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130008022 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008085 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130008129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130008137 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130008261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130008340 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008438 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008476 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008490 . AT A 7 PASS INDEL;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0039;AVGPOST=0.9956;RSQ=0.5448;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130008509 . CAG C 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6275;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130008516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130008711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130008776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130008789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130008807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1271;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 130008815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130009050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130009054 . A AT 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6231;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130009121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130009193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0219;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0004;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130009205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130009254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5462;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130009412 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130009660 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130009688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130009914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.0884;AVGPOST=0.9978;RSQ=0.9891;ERATE=0.0004;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 130010079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130010103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5080;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130010146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130010168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0238;AVGPOST=0.9973;RSQ=0.9512;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130010243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5338;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130010390 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130010451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130010458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0292;AVGPOST=0.9991;RSQ=0.9872;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130010483 . G GTA 567 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5531;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130010601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0410;AVGPOST=0.9992;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130010627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130010640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2165;AVGPOST=0.9953;RSQ=0.9889;ERATE=0.0005;THETA=0.0004;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 130010835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7211;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130010882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4226;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130011186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1275;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 130011268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0400;AVGPOST=0.9979;RSQ=0.9788;ERATE=0.0012;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130011383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130011428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130011530 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130011564 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7263;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130011572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9513;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130011599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0220;AVGPOST=0.9979;RSQ=0.9641;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130011759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0235;AVGPOST=0.9982;RSQ=0.9727;ERATE=0.0005;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130011791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8943;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130011842 . C CATTACATAT 5321 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9786;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130011891 . TTG T 926 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0123;AVGPOST=0.9925;RSQ=0.7714;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130011930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7648;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130011993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9989;RSQ=0.9800;ERATE=0.0005;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130012002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0111;AVGPOST=0.9994;RSQ=0.9747;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130012013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7469;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130012035 . TTAA T 2438 PASS INDEL;BAVGPOST=0.993;BRSQ=0.878;LDAF=0.0287;AVGPOST=0.9988;RSQ=0.9813;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130012117 . TTTTA T 1140 PASS INDEL;BAVGPOST=0.993;BRSQ=0.850;LDAF=0.0210;AVGPOST=0.9951;RSQ=0.9112;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130012125 . A AT 52 PASS INDEL;BAVGPOST=0.994;BRSQ=0.516;LDAF=0.0097;AVGPOST=0.9893;RSQ=0.5966;ERATE=0.0014;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130012137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130012164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8524;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130012319 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9517;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130012382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0616;AVGPOST=0.9985;RSQ=0.9925;ERATE=0.0003;THETA=0.0018;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 130012439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0149;AVGPOST=0.9979;RSQ=0.9491;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130012499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130012518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9605;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130012561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4680;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0002;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 130012614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1568;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 130012903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2388;AVGPOST=0.9955;RSQ=0.9920;ERATE=0.0005;THETA=0.0001;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 130012933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0101;AVGPOST=0.9992;RSQ=0.9657;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130013039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130013053 . ACTGTTCC A 161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130013131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130013134 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130013223 . GA G 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.4979;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130013351 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130013543 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130013610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130013645 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130013690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5012;AVGPOST=0.9996;RSQ=0.9995;ERATE=0.0003;THETA=0.0002;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 130013706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130013741 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130013813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0122;AVGPOST=0.9978;RSQ=0.9420;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130014070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130014148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0114;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130014217 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130014264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130014343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130014361 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130014604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130014629 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130014681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130014801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7247;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130014851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130014928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130015040 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6967;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130015044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9705;ERATE=0.0003;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130015256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130015410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0100;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130015433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9193;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130015448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130015481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9516;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130015499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130015511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130015556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130015622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0038;AVGPOST=0.9947;RSQ=0.4995;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130015742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130015842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5944;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130015958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7188;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130016005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130016064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9802;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130016177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130016244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130016338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9876;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=2157;AN=2184 GT:DS:GL:BD 0.98763734 1 1 130016410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130016430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130016431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130016658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130016743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130016903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9530;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130016940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2527;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 130017049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2527;AVGPOST=0.9977;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 130017264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130017349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7213;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130017359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.738;LDAF=0.0961;AVGPOST=0.9492;RSQ=0.7511;ERATE=0.0187;THETA=0.0050;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 130017469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.730;LDAF=0.0361;AVGPOST=0.9791;RSQ=0.7505;ERATE=0.0084;THETA=0.0131;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130017507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0064;AVGPOST=0.9986;RSQ=0.9152;ERATE=0.0004;THETA=0.0125;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130017584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0133;AVGPOST=0.9962;RSQ=0.8916;ERATE=0.0006;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130017656 . G GA 205 PASS INDEL;BAVGPOST=0.988;BRSQ=0.646;LDAF=0.0232;AVGPOST=0.9791;RSQ=0.6041;ERATE=0.0090;THETA=0.0017;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130017696 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.517;LDAF=0.0774;AVGPOST=0.9163;RSQ=0.5341;ERATE=0.0100;THETA=0.0051;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 130017741 . A AAC 335 PASS INDEL;BAVGPOST=0.989;BRSQ=0.706;LDAF=0.0221;AVGPOST=0.9819;RSQ=0.6333;ERATE=0.0077;THETA=0.0034;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130018249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130018255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5324;ERATE=0.0005;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130018275 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.783;BRSQ=0.511;LDAF=0.4178;AVGPOST=0.7852;RSQ=0.5712;ERATE=0.0357;THETA=0.0108;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130018857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.671;LDAF=0.0040;AVGPOST=0.9967;RSQ=0.6484;ERATE=0.0006;THETA=0.0112;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130018966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.500;LDAF=0.0045;AVGPOST=0.9944;RSQ=0.4793;ERATE=0.0008;THETA=0.0152;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130019012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.3990;ERATE=0.0011;THETA=0.0137;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130019025 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.647;LDAF=0.0075;AVGPOST=0.9930;RSQ=0.6543;ERATE=0.0005;THETA=0.0038;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130019270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0038;AVGPOST=0.9952;RSQ=0.5111;ERATE=0.0008;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130019271 rs72178471 A AT 2709 PASS INDEL;BAVGPOST=0.967;BRSQ=0.643;LDAF=0.0522;AVGPOST=0.9571;RSQ=0.6749;ERATE=0.0058;THETA=0.0068;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130019273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.521;LDAF=0.0159;AVGPOST=0.9824;RSQ=0.5617;ERATE=0.0052;THETA=0.0122;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130019298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.682;LDAF=0.0157;AVGPOST=0.9893;RSQ=0.7018;ERATE=0.0010;THETA=0.0053;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130019360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130019466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8615;ERATE=0.0005;THETA=0.0085;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130019829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5594;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130020041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0037;AVGPOST=0.9981;RSQ=0.7767;ERATE=0.0026;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130020211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.890;LDAF=0.1037;AVGPOST=0.9767;RSQ=0.8913;ERATE=0.0044;THETA=0.0035;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 130020222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8467;ERATE=0.0004;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130020530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.807;LDAF=0.0296;AVGPOST=0.9896;RSQ=0.8578;ERATE=0.0006;THETA=0.0051;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130020549 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.616;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.7299;ERATE=0.0005;THETA=0.0031;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130020581 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130020754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8457;ERATE=0.0005;THETA=0.0063;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130020833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6027;ERATE=0.0006;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130020912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8510;ERATE=0.0004;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130020994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8051;ERATE=0.0004;THETA=0.0074;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130021073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7279;ERATE=0.0005;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130021092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130021182 . CT C 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6490;ERATE=0.0004;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130021263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.857;LDAF=0.0207;AVGPOST=0.9941;RSQ=0.8821;ERATE=0.0008;THETA=0.0036;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130021519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7023;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130021526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0169;AVGPOST=0.9984;RSQ=0.9605;ERATE=0.0004;THETA=0.0082;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130021542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7573;ERATE=0.0005;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130021744 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.848;LDAF=0.0084;AVGPOST=0.9948;RSQ=0.7222;ERATE=0.0031;THETA=0.0038;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130021933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3480;ERATE=0.0007;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130021983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4676;ERATE=0.0005;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130022024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3391;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130022131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.732;LDAF=0.0177;AVGPOST=0.9884;RSQ=0.7498;ERATE=0.0010;THETA=0.0024;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130022346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130022388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5834;ERATE=0.0006;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130022425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9981;RSQ=0.8271;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130022567 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0719;AVGPOST=0.9956;RSQ=0.9735;ERATE=0.0006;THETA=0.0010;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 130022579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130022595 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.795;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8485;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130022745 . AG A 918 PASS INDEL;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0122;AVGPOST=0.9965;RSQ=0.8884;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130022775 . GAGAT G 154 PASS INDEL;BAVGPOST=0.995;BRSQ=0.772;LDAF=0.0125;AVGPOST=0.9970;RSQ=0.9124;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130022798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0170;AVGPOST=0.9941;RSQ=0.8751;ERATE=0.0004;THETA=0.0016;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130022842 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.888;LDAF=0.0215;AVGPOST=0.9892;RSQ=0.8082;ERATE=0.0003;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130022859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8377;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130022990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0184;AVGPOST=0.9978;RSQ=0.9494;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130023048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.706;LDAF=0.0523;AVGPOST=0.9882;RSQ=0.9166;ERATE=0.0003;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 130023209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.576;LDAF=0.0639;AVGPOST=0.9390;RSQ=0.6283;ERATE=0.0082;THETA=0.0006;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 130023396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0039;AVGPOST=0.9961;RSQ=0.5720;ERATE=0.0007;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130023421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.861;LDAF=0.0110;AVGPOST=0.9943;RSQ=0.7848;ERATE=0.0009;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130023426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.893;BRSQ=0.844;LDAF=0.4354;AVGPOST=0.8979;RSQ=0.8721;ERATE=0.0097;THETA=0.0006;AC=985;AN=2184 GT:DS:GL:BD 0.45100734 0 1 130023601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0126;AVGPOST=0.9961;RSQ=0.8761;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130023711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.469;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4625;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130023716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.752;LDAF=0.0173;AVGPOST=0.9904;RSQ=0.7709;ERATE=0.0005;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130023717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0043;AVGPOST=0.9930;RSQ=0.3347;ERATE=0.0013;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130023735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0046;AVGPOST=0.9987;RSQ=0.8789;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130023777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.891;LDAF=0.7110;AVGPOST=0.9607;RSQ=0.9366;ERATE=0.0008;THETA=0.0004;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 130023778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8450;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130023872 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0235;AVGPOST=0.9960;RSQ=0.9255;ERATE=0.0008;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130023904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0534;AVGPOST=0.9952;RSQ=0.9679;ERATE=0.0006;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 130023905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0041;AVGPOST=0.9929;RSQ=0.3145;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130023940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.903;LDAF=0.0116;AVGPOST=0.9979;RSQ=0.9260;ERATE=0.0007;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130024113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0135;AVGPOST=0.9978;RSQ=0.9366;ERATE=0.0003;THETA=0.0021;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130024124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.614;LDAF=0.0063;AVGPOST=0.9949;RSQ=0.6819;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130024187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0730;AVGPOST=0.9921;RSQ=0.9568;ERATE=0.0010;THETA=0.0008;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 130024212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0027;AVGPOST=0.9965;RSQ=0.5777;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130024213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.794;LDAF=0.0482;AVGPOST=0.9823;RSQ=0.8721;ERATE=0.0003;THETA=0.0006;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 130024216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0538;AVGPOST=0.9924;RSQ=0.9493;ERATE=0.0008;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 130024237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.508;LDAF=0.0090;AVGPOST=0.9897;RSQ=0.5546;ERATE=0.0017;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130024276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8255;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130024477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.3883;ERATE=0.0006;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130024574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.940;LDAF=0.2007;AVGPOST=0.9843;RSQ=0.9655;ERATE=0.0004;THETA=0.0016;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 130024635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5360;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130024681 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.4644;AVGPOST=0.9860;RSQ=0.9801;ERATE=0.0006;THETA=0.0004;AC=1015;AN=2184 GT:DS:GL:BD 0.46474358 0 1 130024808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0779;AVGPOST=0.9935;RSQ=0.9676;ERATE=0.0003;THETA=0.0009;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 130024814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.0691;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130024941 . A AAAG 2117 PASS INDEL;BAVGPOST=0.983;BRSQ=0.857;LDAF=0.0588;AVGPOST=0.9887;RSQ=0.9270;ERATE=0.0006;THETA=0.0011;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130024984 . AAAAG A 138 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6282;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130024998 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130025041 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7250;ERATE=0.0002;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130025058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9364;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130025079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4694;AVGPOST=0.9935;RSQ=0.9907;ERATE=0.0003;THETA=0.0111;AC=1024;AN=2184 GT:DS:GL:BD 0.46886447 0 1 130025088 rs59942298 CTTG C 19349 PASS INDEL;BAVGPOST=0.973;BRSQ=0.942;LDAF=0.2509;AVGPOST=0.9753;RSQ=0.9552;ERATE=0.0006;THETA=0.0008;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 130025170 . TTGG T 5724 PASS INDEL;BAVGPOST=0.973;BRSQ=0.940;LDAF=0.2461;AVGPOST=0.9736;RSQ=0.9518;ERATE=0.0005;THETA=0.0045;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 130025174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5426;ERATE=0.0004;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130025414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.589;LDAF=0.0046;AVGPOST=0.9955;RSQ=0.6302;ERATE=0.0005;THETA=0.0162;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130025731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0146;AVGPOST=0.9929;RSQ=0.7881;ERATE=0.0011;THETA=0.0021;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130025770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.870;LDAF=0.2457;AVGPOST=0.9220;RSQ=0.8406;ERATE=0.0042;THETA=0.0006;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 130025811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0135;AVGPOST=0.9953;RSQ=0.8556;ERATE=0.0007;THETA=0.0085;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130025980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8715;ERATE=0.0002;THETA=0.0109;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130026276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5970;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130026453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8951;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130026454 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8990;ERATE=0.0002;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130026548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7791;ERATE=0.0003;THETA=0.0069;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130026892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0096;AVGPOST=0.9992;RSQ=0.9622;ERATE=0.0003;THETA=0.0028;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130026924 rs35776049 CG C 2841 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0455;AVGPOST=0.9973;RSQ=0.9752;ERATE=0.0004;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 130026996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7541;ERATE=0.0002;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130027024 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0210;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0003;THETA=0.0014;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130027126 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130027151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.631;LDAF=0.0122;AVGPOST=0.9912;RSQ=0.7389;ERATE=0.0005;THETA=0.0017;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130027205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0197;AVGPOST=0.9964;RSQ=0.9273;ERATE=0.0008;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130027211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7581;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130027217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0022;AVGPOST=0.9969;RSQ=0.4020;ERATE=0.0006;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130027228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0034;AVGPOST=0.9966;RSQ=0.5559;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130027299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.5524;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130027330 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0848;AVGPOST=0.9958;RSQ=0.9774;ERATE=0.0005;THETA=0.0008;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 130027379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0070;AVGPOST=0.9948;RSQ=0.7284;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130027392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130027400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5260;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130027562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.735;LDAF=0.0099;AVGPOST=0.9932;RSQ=0.7325;ERATE=0.0010;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130027594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.9090;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130027604 . CAG C 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.5152;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130027759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9005;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130027823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5673;AVGPOST=0.9977;RSQ=0.9967;ERATE=0.0004;THETA=0.0006;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 130027840 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130027881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.873;LDAF=0.0133;AVGPOST=0.9963;RSQ=0.8840;ERATE=0.0007;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130028009 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.2968;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130028050 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.586;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7079;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130028224 rs112655733 C CA 21420 PASS INDEL;BAVGPOST=0.856;BRSQ=0.754;LDAF=0.6521;AVGPOST=0.8791;RSQ=0.8147;ERATE=0.0077;THETA=0.0010;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 130028243 . AT A 8722 PASS INDEL;BAVGPOST=0.896;BRSQ=0.796;LDAF=0.3821;AVGPOST=0.8294;RSQ=0.7248;ERATE=0.0295;THETA=0.0008;AC=802;AN=2184 GT:DS:GL:BD 0.36721611 0 1 130028253 . TAAATAAATA T 4709 PASS INDEL;BAVGPOST=0.975;BRSQ=0.822;LDAF=0.0782;AVGPOST=0.9800;RSQ=0.9044;ERATE=0.0007;THETA=0.0007;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 130028258 . TAAATA T 2800 PASS INDEL;BAVGPOST=0.975;BRSQ=0.823;LDAF=0.0718;AVGPOST=0.9810;RSQ=0.9044;ERATE=0.0005;THETA=0.0005;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 130028262 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.957;LDAF=0.0783;AVGPOST=0.9952;RSQ=0.9727;ERATE=0.0007;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 130028309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130028314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1114;AVGPOST=0.9969;RSQ=0.9863;ERATE=0.0005;THETA=0.0008;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 130028373 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9950;RSQ=0.8353;ERATE=0.0004;THETA=0.0020;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130028416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0199;AVGPOST=0.9908;RSQ=0.8200;ERATE=0.0008;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130028428 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1236;AVGPOST=0.9949;RSQ=0.9823;ERATE=0.0006;THETA=0.0007;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 130028441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.493;LDAF=0.0065;AVGPOST=0.9923;RSQ=0.5202;ERATE=0.0012;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130028503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0850;AVGPOST=0.9960;RSQ=0.9799;ERATE=0.0004;THETA=0.0003;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 130028560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0048;AVGPOST=0.9948;RSQ=0.6127;ERATE=0.0010;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130028634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4411;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130028681 . AT A 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4320;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130028751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.890;LDAF=0.0186;AVGPOST=0.9958;RSQ=0.9120;ERATE=0.0006;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130028837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9551;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130028879 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130028939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9647;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130029002 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5771;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130029233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5690;AVGPOST=0.9926;RSQ=0.9896;ERATE=0.0010;THETA=0.0011;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 130029367 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130029521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0231;AVGPOST=0.9985;RSQ=0.9778;ERATE=0.0003;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130029555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9770;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130029666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6849;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130029758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130029786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8622;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130029795 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0056;AVGPOST=0.9978;RSQ=0.8686;ERATE=0.0005;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130029797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4865;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130029940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4467;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130029976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.5102;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130030018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9505;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130030284 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1138;AVGPOST=0.9966;RSQ=0.9851;ERATE=0.0005;THETA=0.0005;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 130030364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5733;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130030372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0054;AVGPOST=0.9972;RSQ=0.7833;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130030547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0050;AVGPOST=0.9953;RSQ=0.6506;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130030585 rs74790095 C CG 4021 PASS INDEL;BAVGPOST=0.985;BRSQ=0.753;LDAF=0.0272;AVGPOST=0.9944;RSQ=0.9167;ERATE=0.0006;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130030694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6487;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130031100 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130031328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130031679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9164;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130031691 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130031729 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130031731 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8159;AVGPOST=0.9987;RSQ=0.9963;ERATE=0.0004;THETA=0.0007;AC=1783;AN=2184 GT:DS:GL:BD 0.81639194 1 1 130031746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5220;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130031862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0113;AVGPOST=0.9986;RSQ=0.9525;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130032070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130032159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0004;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130032308 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130032489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0609;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 130032579 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9164;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130032613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130032642 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1441;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 130032751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130032759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130032764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130032871 rs66551989 C CAGA 14687 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0620;AVGPOST=0.9986;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130032951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8142;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130032987 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033034 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4462;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 130033058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033228 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7040;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130033376 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.6577;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033487 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.6918;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130033490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0049;AVGPOST=0.9991;RSQ=0.9172;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130033571 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6014;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0091;AVGPOST=0.9977;RSQ=0.9109;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130033641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9008;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130033938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130033960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4360;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=952;AN=2184 GT:DS:GL:BD 0.43589744 0 1 130034042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0630;AVGPOST=0.9978;RSQ=0.9883;ERATE=0.0003;THETA=0.0007;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130034070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130034138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0622;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0003;THETA=0.0030;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130034189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6808;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130034204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5714;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130034216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0028;AVGPOST=0.9957;RSQ=0.4501;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130034257 rs35546871 T TG 6719 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0622;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130034415 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5771;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130034536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130034880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130034961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0045;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130034973 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9994;RSQ=0.9846;ERATE=0.0003;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130035151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4996;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130035189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0621;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130035204 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7600;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130035252 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130035268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7036;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130035297 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130035318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130035384 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130035395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1965;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 130035455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130035608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6869;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130035626 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8562;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130035919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0174;AVGPOST=0.9987;RSQ=0.9766;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130036109 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8566;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130036182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0623;AVGPOST=0.9988;RSQ=0.9909;ERATE=0.0005;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130036195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130036365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130036492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5755;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130036506 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0189;AVGPOST=0.9960;RSQ=0.9141;ERATE=0.0003;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130036697 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9996;RSQ=0.9824;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130036772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7813;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130036797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0161;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130036801 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5992;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130036912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9808;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130036991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6253;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130037042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0622;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 130037249 rs72506300 GT G 836 PASS INDEL;BAVGPOST=0.962;BRSQ=0.886;LDAF=0.1820;AVGPOST=0.9869;RSQ=0.9656;ERATE=0.0006;THETA=0.0009;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130037249 . ATGT A 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130037269 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130037464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5402;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130037747 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0146;AVGPOST=0.9957;RSQ=0.8857;ERATE=0.0006;THETA=0.0025;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130037947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.9598;AVGPOST=0.9887;RSQ=0.8860;ERATE=0.0011;THETA=0.0005;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 130037967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130038049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3988;AVGPOST=0.9971;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 130038335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9212;ERATE=0.0005;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130038361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130038531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038558 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5939;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 130038748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9538;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130038831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5779;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1127;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 130038914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0241;AVGPOST=0.9990;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130038971 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130038985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9845;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130038989 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7197;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130039094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1125;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 130039138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130039429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4515;AVGPOST=0.9926;RSQ=0.9892;ERATE=0.0013;THETA=0.0005;AC=985;AN=2184 GT:DS:GL:BD 0.45100734 0 1 130039432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.7176;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130039497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130039503 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.715;LDAF=0.9729;AVGPOST=0.9750;RSQ=0.6663;ERATE=0.0063;THETA=0.0008;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 130039802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1115;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 130039873 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130039895 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9024;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130040038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130040265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.742;BRSQ=0.446;LDAF=0.4476;AVGPOST=0.7611;RSQ=0.5261;ERATE=0.1173;THETA=0.0006;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 130040415 . ATATG A 825 PASS INDEL;BAVGPOST=0.963;BRSQ=0.432;LDAF=0.0595;AVGPOST=0.9283;RSQ=0.4898;ERATE=0.0089;THETA=0.0007;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130040431 rs67607839 GTA G 8717 PASS INDEL;BAVGPOST=0.880;BRSQ=0.772;LDAF=0.5437;AVGPOST=0.8230;RSQ=0.7128;ERATE=0.0529;THETA=0.0005;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 130040457 . ACG A 14987 PASS INDEL;BAVGPOST=0.920;BRSQ=0.856;LDAF=0.5726;AVGPOST=0.8886;RSQ=0.8365;ERATE=0.0228;THETA=0.0008;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 130040473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0176;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0003;THETA=0.0033;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130040678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1078;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0003;THETA=0.0002;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 130040836 . T TA 125 PASS INDEL;BAVGPOST=0.993;BRSQ=0.795;LDAF=0.0240;AVGPOST=0.9862;RSQ=0.7477;ERATE=0.0013;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130040933 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.735;LDAF=0.0213;AVGPOST=0.9893;RSQ=0.7884;ERATE=0.0024;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130040940 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0209;AVGPOST=0.9945;RSQ=0.8924;ERATE=0.0018;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130040941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.730;LDAF=0.0073;AVGPOST=0.9955;RSQ=0.7413;ERATE=0.0015;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130041000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0039;AVGPOST=0.9948;RSQ=0.4854;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130041021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0095;AVGPOST=0.9984;RSQ=0.9269;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130041056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6190;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130041141 . TAAAG T 235 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7242;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130041254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8928;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130041347 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1115;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 130041470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.862;LDAF=0.0172;AVGPOST=0.9984;RSQ=0.9643;ERATE=0.0005;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130041641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9273;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130041702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0748;AVGPOST=0.9988;RSQ=0.9922;ERATE=0.0005;THETA=0.0008;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130041968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1296;AVGPOST=0.9979;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 130042002 . A AAAT 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130042124 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9182;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130042212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130042297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130042322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4728;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130042323 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130042345 . A AT 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130042362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5710;ERATE=0.0007;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130042707 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0131;AVGPOST=0.9984;RSQ=0.9501;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130042946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0397;AVGPOST=0.9988;RSQ=0.9854;ERATE=0.0004;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130043003 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0127;AVGPOST=0.9992;RSQ=0.9742;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130043086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2341;AVGPOST=0.9972;RSQ=0.9941;ERATE=0.0004;THETA=0.0007;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 130043097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0278;AVGPOST=0.9991;RSQ=0.9872;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130043106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1856;AVGPOST=0.9966;RSQ=0.9909;ERATE=0.0004;THETA=0.0005;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 130043206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130043210 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130043275 . GT G 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7089;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130043500 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0266;AVGPOST=0.9994;RSQ=0.9908;ERATE=0.0003;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130043544 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9087;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130043636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8508;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130043670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130043692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0035;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130043773 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0274;AVGPOST=0.9984;RSQ=0.9765;ERATE=0.0004;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130043823 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.666;LDAF=0.0335;AVGPOST=0.9685;RSQ=0.6230;ERATE=0.0136;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130043921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0113;AVGPOST=0.9974;RSQ=0.9144;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130043927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0044;AVGPOST=0.9970;RSQ=0.7389;ERATE=0.0011;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130044013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1987;AVGPOST=0.9961;RSQ=0.9910;ERATE=0.0006;THETA=0.0004;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 130044042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044059 . T TA 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4148;ERATE=0.0005;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044079 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044126 . AT A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4876;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1476;AVGPOST=0.9964;RSQ=0.9887;ERATE=0.0007;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 130044330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0090;AVGPOST=0.9985;RSQ=0.9382;ERATE=0.0005;THETA=0.0075;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130044538 . A ACCAGGG 190 PASS INDEL;BAVGPOST=0.997;BRSQ=0.417;LDAF=0.0092;AVGPOST=0.9915;RSQ=0.6407;ERATE=0.0006;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130044588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0755;AVGPOST=0.9943;RSQ=0.9734;ERATE=0.0005;THETA=0.0021;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 130044644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0102;AVGPOST=0.9972;RSQ=0.8838;ERATE=0.0005;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130044686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9987;RSQ=0.9579;ERATE=0.0004;THETA=0.0061;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130044744 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0101;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130044873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1822;AVGPOST=0.9971;RSQ=0.9918;ERATE=0.0005;THETA=0.0006;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 130044960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130044975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7887;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130045021 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9059;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130045040 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0109;AVGPOST=0.9953;RSQ=0.8509;ERATE=0.0004;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130045065 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0249;AVGPOST=0.9989;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130045097 . T TTCTC 18779 PASS INDEL;BAVGPOST=0.978;BRSQ=0.958;LDAF=0.3282;AVGPOST=0.9788;RSQ=0.9673;ERATE=0.0008;THETA=0.0003;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 130045115 rs59119495 C CTCTA 51869 PASS INDEL;BAVGPOST=0.979;BRSQ=0.958;LDAF=0.3284;AVGPOST=0.9798;RSQ=0.9689;ERATE=0.0005;THETA=0.0006;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 130045117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0187;AVGPOST=0.9959;RSQ=0.9213;ERATE=0.0006;THETA=0.0040;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130045155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.844;LDAF=0.0138;AVGPOST=0.9917;RSQ=0.7807;ERATE=0.0007;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130045243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8050;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130045312 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8548;AVGPOST=0.9966;RSQ=0.9891;ERATE=0.0004;THETA=0.0038;AC=1867;AN=2184 GT:DS:GL:BD 0.85485345 1 1 130045379 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0063;AVGPOST=0.9990;RSQ=0.9438;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130045420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0162;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0004;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130045440 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1918;AVGPOST=0.9974;RSQ=0.9936;ERATE=0.0004;THETA=0.0004;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 130045503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130045632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2222;AVGPOST=0.9968;RSQ=0.9929;ERATE=0.0017;THETA=0.0012;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 130045749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2792;AVGPOST=0.9962;RSQ=0.9931;ERATE=0.0010;THETA=0.0034;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 130045852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8565;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130045907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130045993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5588;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0003;THETA=0.0010;AC=1221;AN=2184 GT:DS:GL:BD 0.55906594 1 1 130046049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130046081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0007;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130046231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9300;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130046302 . TCA T 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130046321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9413;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130046353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1992;AVGPOST=0.9976;RSQ=0.9944;ERATE=0.0004;THETA=0.0040;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 130046359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130046372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130046383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9080;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130046392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130046502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0182;AVGPOST=0.9986;RSQ=0.9714;ERATE=0.0004;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130046583 . CA C 1448 PASS INDEL;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0245;AVGPOST=0.9943;RSQ=0.9201;ERATE=0.0004;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130046688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0356;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130046701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7033;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130047096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130047232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0092;AVGPOST=0.9990;RSQ=0.9544;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130047279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9628;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130047370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0317;AVGPOST=0.9977;RSQ=0.9677;ERATE=0.0006;THETA=0.0051;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130047392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.5235;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130047434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0085;AVGPOST=0.9968;RSQ=0.8267;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130047437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2034;AVGPOST=0.9926;RSQ=0.9834;ERATE=0.0006;THETA=0.0004;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 130047438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9450;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130047497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4776;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130047568 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130047687 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1376;AVGPOST=0.9949;RSQ=0.9835;ERATE=0.0004;THETA=0.0003;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 130047693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9521;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130047721 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9320;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130047722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130047754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130047770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0070;AVGPOST=0.9994;RSQ=0.9609;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130047827 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9391;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130047872 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130047874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130047904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7172;ERATE=0.0005;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130048060 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0589;AVGPOST=0.9975;RSQ=0.9843;ERATE=0.0005;THETA=0.0007;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130048089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5277;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130048109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0097;AVGPOST=0.9961;RSQ=0.8454;ERATE=0.0007;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130048206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.4234;AVGPOST=0.9848;RSQ=0.9787;ERATE=0.0007;THETA=0.0024;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 130048208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.3973;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130048220 . C CA 864 PASS INDEL;BAVGPOST=0.441;BRSQ=0.099;LDAF=0.3981;AVGPOST=0.6422;RSQ=0.3474;ERATE=0.0219;THETA=0.0003;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 130048281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8835;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0003;THETA=0.0010;AC=1928;AN=2184 GT:DS:GL:BD 0.88278389 1 1 130048366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8114;ERATE=0.0012;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130048370 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9403;AVGPOST=0.9992;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=2053;AN=2184 GT:DS:GL:BD 0.94001830 1 1 130048471 . TTC T 118 PASS INDEL;BAVGPOST=0.983;BRSQ=0.573;LDAF=0.0370;AVGPOST=0.9573;RSQ=0.5364;ERATE=0.0104;THETA=0.0010;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130048523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4468;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130048564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0115;AVGPOST=0.9987;RSQ=0.9511;ERATE=0.0004;THETA=0.0014;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130048614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.858;LDAF=0.0117;AVGPOST=0.9972;RSQ=0.8954;ERATE=0.0005;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130048655 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6773;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130048827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8780;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130048881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6009;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130048931 rs113227687 AG A 950 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9804;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130049083 . AAAG A 692 PASS INDEL;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0069;AVGPOST=0.9993;RSQ=0.9601;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130049087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130049148 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7109;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130049265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7912;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130049310 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130049348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8524;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130049430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7814;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130049510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8614;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130049564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130049698 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130049713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4583;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130049882 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9367;AVGPOST=0.9933;RSQ=0.9613;ERATE=0.0009;THETA=0.0010;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 130049969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4176;AVGPOST=0.9969;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=909;AN=2184 GT:DS:GL:BD 0.41620880 0 1 130050057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130050072 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6674;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130050145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130050295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130050492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0287;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130050578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0048;AVGPOST=0.9967;RSQ=0.7287;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130050868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130050875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9399;AVGPOST=0.9986;RSQ=0.9921;ERATE=0.0005;THETA=0.0006;AC=2053;AN=2184 GT:DS:GL:BD 0.94001830 1 1 130051422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5661;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130051546 . C CA 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7073;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130051610 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9606;AVGPOST=0.9979;RSQ=0.9829;ERATE=0.0003;THETA=0.0006;AC=2099;AN=2184 GT:DS:GL:BD 0.96108061 1 1 130051651 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4893;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130051664 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130051669 . GA G 306 PASS INDEL;BAVGPOST=0.990;BRSQ=0.602;LDAF=0.0156;AVGPOST=0.9859;RSQ=0.6412;ERATE=0.0005;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130051812 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130051867 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9394;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0038;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 130051871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0009;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130051989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3963;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0006;AC=863;AN=2184 GT:DS:GL:BD 0.39514652 0 1 130052022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130052118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130052707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5064;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130052761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4533;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130053003 . CTT C 126 PASS INDEL;BAVGPOST=0.998;BRSQ=0.636;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5393;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130053072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5247;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130053212 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.477;LDAF=0.0051;AVGPOST=0.9921;RSQ=0.3384;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130053312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.608;LDAF=0.0056;AVGPOST=0.9934;RSQ=0.5004;ERATE=0.0014;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130053344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7728;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130053379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2098;AVGPOST=0.9920;RSQ=0.9809;ERATE=0.0017;THETA=0.0008;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 130053550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8078;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130053675 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0709;AVGPOST=0.9947;RSQ=0.9693;ERATE=0.0004;THETA=0.0009;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 130053732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130053809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0210;AVGPOST=0.9972;RSQ=0.9516;ERATE=0.0003;THETA=0.0015;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130053882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0213;AVGPOST=0.9972;RSQ=0.9507;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130053883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130054003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130054016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6636;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130054137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0190;AVGPOST=0.9985;RSQ=0.9720;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130054169 . CA C 410 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7042;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130054369 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.917;LDAF=0.0340;AVGPOST=0.9960;RSQ=0.9562;ERATE=0.0007;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130054384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2187;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 130054488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130054586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130054594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6909;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130054611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130054732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9753;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130054784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6912;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130054800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9997;RSQ=0.9703;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130054919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0157;AVGPOST=0.9986;RSQ=0.9684;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130055054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9704;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130055089 . TAG T 199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.6448;ERATE=0.0005;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130055117 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130055129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3264;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0005;THETA=0.0004;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 130055272 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130055292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2184;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 130055415 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130055461 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130055689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6186;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130055704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7777;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130055709 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8279;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130055724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8602;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130055751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8459;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130055798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2887;AVGPOST=0.9959;RSQ=0.9919;ERATE=0.0008;THETA=0.0003;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 130055827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7306;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130055883 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130056088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0031;AVGPOST=0.9947;RSQ=0.2306;ERATE=0.0009;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130056545 . GGT G 80 PASS INDEL;BAVGPOST=0.980;BRSQ=0.355;LDAF=0.0541;AVGPOST=0.9157;RSQ=0.3614;ERATE=0.0063;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130056864 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.7251;AVGPOST=0.9898;RSQ=0.9814;ERATE=0.0008;THETA=0.0005;AC=1588;AN=2184 GT:DS:GL:BD 0.72710621 1 1 130056884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6033;ERATE=0.0009;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130057364 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2186;AVGPOST=0.9947;RSQ=0.9883;ERATE=0.0009;THETA=0.0003;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 130057491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5851;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130057605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2385;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0006;THETA=0.0005;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 130057703 . TG T 66 PASS INDEL;BAVGPOST=0.998;BRSQ=0.626;LDAF=0.0035;AVGPOST=0.9959;RSQ=0.5046;ERATE=0.0009;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130057754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130057870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130057884 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130057975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130058040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9790;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130058199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0124;AVGPOST=0.9983;RSQ=0.9495;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130058419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9978;RSQ=0.9369;ERATE=0.0003;THETA=0.0031;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130058428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.760;LDAF=0.0289;AVGPOST=0.9872;RSQ=0.8329;ERATE=0.0005;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130058484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130058598 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0415;AVGPOST=0.9984;RSQ=0.9855;ERATE=0.0003;THETA=0.0011;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130058600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0172;AVGPOST=0.9979;RSQ=0.9529;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130058614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9122;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130058646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0120;AVGPOST=0.9976;RSQ=0.9216;ERATE=0.0003;THETA=0.0039;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130058772 . TG T 1019 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0206;AVGPOST=0.9953;RSQ=0.9145;ERATE=0.0009;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130058879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0065;AVGPOST=0.9950;RSQ=0.7452;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130058981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5367;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130058982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0132;AVGPOST=0.9970;RSQ=0.9043;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130059279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.706;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5216;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130059331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0920;AVGPOST=0.9962;RSQ=0.9849;ERATE=0.0003;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 130059341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130059469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6151;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130059542 . GTTA G 227 PASS INDEL;BAVGPOST=0.984;BRSQ=0.676;LDAF=0.0396;AVGPOST=0.9584;RSQ=0.5514;ERATE=0.0157;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130059657 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.613;LDAF=0.0382;AVGPOST=0.9574;RSQ=0.5601;ERATE=0.0079;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130059879 . AG A 144 PASS INDEL;BAVGPOST=0.998;BRSQ=0.738;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6715;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130059950 . C CA 53 PASS INDEL;BAVGPOST=0.998;BRSQ=0.665;LDAF=0.0042;AVGPOST=0.9962;RSQ=0.6059;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130060003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.9934;AVGPOST=0.9968;RSQ=0.8003;ERATE=0.0004;THETA=0.0037;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 130060027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5515;ERATE=0.0006;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130060047 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130060091 . C CA 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4920;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130060265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.574;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4473;ERATE=0.0010;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130060315 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0035;AVGPOST=0.9947;RSQ=0.3845;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130060391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0089;AVGPOST=0.9977;RSQ=0.8989;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130060435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5787;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130060448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.900;LDAF=0.0232;AVGPOST=0.9953;RSQ=0.9205;ERATE=0.0007;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130060593 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.956;LDAF=0.0519;AVGPOST=0.9935;RSQ=0.9491;ERATE=0.0006;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 130060683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0003;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130060972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0295;AVGPOST=0.9984;RSQ=0.9771;ERATE=0.0003;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130061091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130061119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0222;AVGPOST=0.9983;RSQ=0.9703;ERATE=0.0003;THETA=0.0039;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130061131 . GT G 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5318;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130061291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0808;AVGPOST=0.9957;RSQ=0.9811;ERATE=0.0003;THETA=0.0006;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 130061322 . AT A 64 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.5708;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130061341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7558;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130061366 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130061592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130061694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6718;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130061795 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7470;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130061860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130062013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.825;LDAF=0.1025;AVGPOST=0.9407;RSQ=0.7656;ERATE=0.0151;THETA=0.0006;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 130062064 . AAG A 584 PASS INDEL;BAVGPOST=0.959;BRSQ=0.708;LDAF=0.0743;AVGPOST=0.9556;RSQ=0.7660;ERATE=0.0020;THETA=0.0009;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 130062064 rs58352516 AGG A 4934 PASS INDEL;BAVGPOST=0.865;BRSQ=0.535;LDAF=0.2201;AVGPOST=0.8174;RSQ=0.5506;ERATE=0.0388;THETA=0.0005;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 130062079 rs71084259 G GA 845 PASS INDEL;BAVGPOST=0.966;BRSQ=0.631;LDAF=0.0625;AVGPOST=0.9572;RSQ=0.7296;ERATE=0.0015;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 130062084 rs71084259 A AG 454 PASS INDEL;BAVGPOST=0.967;BRSQ=0.624;LDAF=0.0569;AVGPOST=0.9594;RSQ=0.7171;ERATE=0.0024;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 130062086 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.236;LDAF=0.0055;AVGPOST=0.9898;RSQ=0.2056;ERATE=0.0016;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130062116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.569;LDAF=0.1589;AVGPOST=0.8543;RSQ=0.5322;ERATE=0.0256;THETA=0.0064;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 130062120 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.885;LDAF=0.2686;AVGPOST=0.9252;RSQ=0.8448;ERATE=0.0152;THETA=0.0023;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 130062132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0111;AVGPOST=0.9978;RSQ=0.9106;ERATE=0.0006;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130062155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130062216 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4585;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=1003;AN=2184 GT:DS:GL:BD 0.45924908 0 1 130062224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130062681 . AAGAG A 206 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4189;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130062705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9164;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130062709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0430;AVGPOST=0.9953;RSQ=0.9576;ERATE=0.0005;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130062773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7569;ERATE=0.0013;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130062819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9734;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130062925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7820;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130062931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0747;AVGPOST=0.9990;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130063125 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0747;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 130063129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130063184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130063225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130063326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7347;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 130063381 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0267;AVGPOST=0.9994;RSQ=0.9890;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130063392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7385;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0006;THETA=0.0002;AC=1612;AN=2184 GT:DS:GL:BD 0.73809522 1 1 130063434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0316;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0004;THETA=0.0009;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 130063623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0255;AVGPOST=0.9994;RSQ=0.9907;ERATE=0.0003;THETA=0.0010;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130063637 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130063785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1833;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0027;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130063880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0364;AVGPOST=0.9990;RSQ=0.9896;ERATE=0.0004;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130063928 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.9852;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0005;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 130064096 . GT G 105 PASS INDEL;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130064169 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7198;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130064193 . TTGAC T 450 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130064196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9924;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130064204 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130064265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130064272 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130064294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1825;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 130064303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7170;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130064390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9662;ERATE=0.0003;THETA=0.0018;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130064529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0267;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130064692 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8354;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130064708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0030;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130064750 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130064861 rs111714249 TA T 2359 PASS INDEL;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0267;AVGPOST=0.9994;RSQ=0.9892;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130064969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9877;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130065038 . CATAAA C 178 PASS INDEL;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0037;AVGPOST=0.9970;RSQ=0.6617;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130065125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4956;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130065268 rs113127662 GTTTC G 5202 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0267;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0009;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130065391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130065810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0078;AVGPOST=0.9963;RSQ=0.8328;ERATE=0.0003;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130066001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130066029 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0266;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130066033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130066119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130066289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130066392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130066502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0122;AVGPOST=0.9992;RSQ=0.9675;ERATE=0.0005;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130066684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8796;ERATE=0.0005;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130066781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5176;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130066782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130067109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0266;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0009;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130067118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8159;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130067244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130067305 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9327;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130067347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5179;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130067369 . CAT C 4383 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0239;AVGPOST=0.9962;RSQ=0.9348;ERATE=0.0004;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130067451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7112;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 130067458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0147;AVGPOST=0.9984;RSQ=0.9552;ERATE=0.0005;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130067568 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130067572 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7560;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=1651;AN=2184 GT:DS:GL:BD 0.75595236 1 1 130067677 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1840;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0004;THETA=0.0018;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130067689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1827;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 130067766 . TTAAA T 144 PASS INDEL;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0051;AVGPOST=0.9964;RSQ=0.6920;ERATE=0.0011;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130067826 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8697;ERATE=0.0006;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130068117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130068254 rs71842036 TGGAG T 5341 PASS INDEL;BAVGPOST=0.989;BRSQ=0.840;LDAF=0.0266;AVGPOST=0.9904;RSQ=0.8733;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 130068458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130068496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8346;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130068561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130068809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130068886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3138;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130069268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9753;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130069295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0199;AVGPOST=0.9993;RSQ=0.9862;ERATE=0.0003;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130069321 . TTGA T 188 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8790;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130069617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.965;LDAF=0.5154;AVGPOST=0.9936;RSQ=0.9888;ERATE=0.0006;THETA=0.0002;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 130069981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0097;AVGPOST=0.9977;RSQ=0.9065;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130069990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.0650;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130070019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7338;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130070075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6221;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130070136 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.593;BRSQ=0.233;LDAF=0.4925;AVGPOST=0.7538;RSQ=0.5865;ERATE=0.0104;THETA=0.0005;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 130070542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0321;AVGPOST=0.9923;RSQ=0.9112;ERATE=0.0010;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130070742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.746;LDAF=0.0458;AVGPOST=0.9840;RSQ=0.8617;ERATE=0.0006;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130070759 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0035;AVGPOST=0.9957;RSQ=0.5282;ERATE=0.0007;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130070768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7347;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130070908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5785;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130071052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3600;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130071151 . AAATTG A 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5363;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130071265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130071288 rs55706942 T TTAGTTTAGACC 134990 PASS INDEL;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.5234;AVGPOST=0.9929;RSQ=0.9873;ERATE=0.0012;THETA=0.0004;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 130071420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4206;AVGPOST=0.9964;RSQ=0.9941;ERATE=0.0006;THETA=0.0004;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 130071825 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130071997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130072063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5014;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130072089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9250;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130072141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6905;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130072173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4829;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130072279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0270;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130072669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1059;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 130072717 rs60675924 GCAGGCCCCTCTGGAACC G 1946 PASS INDEL;BAVGPOST=0.941;BRSQ=0.406;LDAF=0.0679;AVGPOST=0.9189;RSQ=0.5211;ERATE=0.0084;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130072801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2940;AVGPOST=0.9925;RSQ=0.9855;ERATE=0.0006;THETA=0.0023;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 130072856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5001;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130072872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130073015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130073226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130073668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130073789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130073877 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130073900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130073984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0081;AVGPOST=0.9996;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130074032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130074358 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130074363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130074400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130074461 . CAA C 428 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7995;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130074688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130074733 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0068;AVGPOST=0.9987;RSQ=0.9228;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130074895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130074968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130075087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130075094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5303;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130075142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6519;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130075143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6984;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130075167 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0139;AVGPOST=0.9983;RSQ=0.9486;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130075225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9380;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130075305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0136;AVGPOST=0.9971;RSQ=0.9125;ERATE=0.0006;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130075410 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0349;AVGPOST=0.9932;RSQ=0.9193;ERATE=0.0010;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130075491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0057;AVGPOST=0.9984;RSQ=0.8680;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130075853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0737;AVGPOST=0.9973;RSQ=0.9840;ERATE=0.0005;THETA=0.0009;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 130076003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0123;AVGPOST=0.9982;RSQ=0.9433;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130076037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130076068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4832;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130076106 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0320;AVGPOST=0.9990;RSQ=0.9886;ERATE=0.0004;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130076272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130076830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0118;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130076952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130076961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7598;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130077039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7676;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130077070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130077140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077415 . ATTC A 372 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6253;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9994;RSQ=0.9658;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130077562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8440;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130077612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130077713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0087;AVGPOST=0.9973;RSQ=0.8822;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130077789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0052;AVGPOST=0.9951;RSQ=0.6304;ERATE=0.0023;THETA=0.0030;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130077821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7899;ERATE=0.0005;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130077825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130077863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0388;AVGPOST=0.9973;RSQ=0.9761;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130077879 . CTGCTCA C 580 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9054;ERATE=0.0003;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130077907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130077928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078279 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130078467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.4336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130078528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.7743;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130078529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7903;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130078665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130078749 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9174;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130078764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5096;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130078918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0262;AVGPOST=0.9993;RSQ=0.9880;ERATE=0.0004;THETA=0.0009;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130078964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9659;ERATE=0.0003;THETA=0.0033;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130079000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079017 . CAATT C 4225 PASS INDEL;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0151;AVGPOST=0.9985;RSQ=0.9596;ERATE=0.0003;THETA=0.0014;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130079036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130079043 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6997;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9412;ERATE=0.0004;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130079220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0408;AVGPOST=0.9994;RSQ=0.9924;ERATE=0.0003;THETA=0.0010;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130079285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6966;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130079531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0214;AVGPOST=0.9953;RSQ=0.9337;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130079571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3164;AVGPOST=0.9937;RSQ=0.9887;ERATE=0.0005;THETA=0.0006;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 130079635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130079738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5162;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079833 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8911;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130079966 . GATA G 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079974 . ATAAT A 469 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.3247;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130079986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.9328;AVGPOST=0.9880;RSQ=0.9335;ERATE=0.0007;THETA=0.0007;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 130080065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0128;AVGPOST=0.9984;RSQ=0.9490;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130080119 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.775;LDAF=0.0105;AVGPOST=0.9952;RSQ=0.7946;ERATE=0.0008;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130080136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0230;AVGPOST=0.9916;RSQ=0.8664;ERATE=0.0005;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130080163 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4908;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130080302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0079;AVGPOST=0.9930;RSQ=0.6222;ERATE=0.0007;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130080306 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7198;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130080356 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0135;AVGPOST=0.9963;RSQ=0.8865;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130080423 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3223;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130080429 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.713;LDAF=0.0059;AVGPOST=0.9945;RSQ=0.6199;ERATE=0.0006;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130080434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.919;LDAF=0.9248;AVGPOST=0.9844;RSQ=0.9276;ERATE=0.0004;THETA=0.0005;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 130080481 . GTC G 14286 PASS INDEL;BAVGPOST=0.703;BRSQ=0.428;LDAF=0.6669;AVGPOST=0.7190;RSQ=0.5200;ERATE=0.0388;THETA=0.0003;AC=1579;AN=2184 GT:DS:GL:BD 0.72298533 1 1 130080535 . GA G 4753 PASS INDEL;BAVGPOST=0.739;BRSQ=0.340;LDAF=0.3271;AVGPOST=0.7038;RSQ=0.3952;ERATE=0.0880;THETA=0.0002;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 130080567 . TGAAATGACTG T 46671 PASS INDEL;BAVGPOST=0.962;BRSQ=0.921;LDAF=0.2379;AVGPOST=0.9839;RSQ=0.9734;ERATE=0.0007;THETA=0.0007;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 130080619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130080684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0179;AVGPOST=0.9991;RSQ=0.9786;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130080694 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.9965;AVGPOST=0.9981;RSQ=0.7774;ERATE=0.0003;THETA=0.0005;AC=2178;AN=2184 GT:DS:GL:BD 0.99725276 1 1 130080731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2500;AVGPOST=0.9976;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 130080761 . CACTA C 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.4997;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130080842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8275;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130080874 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130080882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130080941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130081002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130081037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9121;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130081230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130081278 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9593;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 130081304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9276;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130081309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6312;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130081339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0170;AVGPOST=0.9982;RSQ=0.9554;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130081373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8095;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130081469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130081502 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130081581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0292;AVGPOST=0.9990;RSQ=0.9846;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130081613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8783;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130081823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0181;AVGPOST=0.9995;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130081849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5266;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130081882 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0113;AVGPOST=0.9987;RSQ=0.9510;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130081924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130081965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0063;AVGPOST=0.9981;RSQ=0.8905;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130082171 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8735;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130082209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130082265 rs11392042 T TC 115465 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.9782;AVGPOST=0.9970;RSQ=0.9511;ERATE=0.0003;THETA=0.0011;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 130082349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130082357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.736;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.8112;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130082358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6745;ERATE=0.0009;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130082379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0181;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0004;THETA=0.0014;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130082434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9354;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130082573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130082630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130082843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8247;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130082846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130082863 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0003;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130082885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130083124 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9516;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130083209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.9177;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130083249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5519;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130083330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130083424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.855;LDAF=0.7994;AVGPOST=0.9112;RSQ=0.7610;ERATE=0.0269;THETA=0.0002;AC=1792;AN=2184 GT:DS:GL:BD 0.82051283 1 1 130083475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.863;LDAF=0.8004;AVGPOST=0.9155;RSQ=0.7799;ERATE=0.0263;THETA=0.0004;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 130083483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.832;LDAF=0.7637;AVGPOST=0.8673;RSQ=0.7119;ERATE=0.0410;THETA=0.0005;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 130083493 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130083585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1159;AVGPOST=0.9981;RSQ=0.9920;ERATE=0.0003;THETA=0.0015;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 130083615 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5023;ERATE=0.0004;THETA=0.0370;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130083659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0439;AVGPOST=0.9993;RSQ=0.9923;ERATE=0.0003;THETA=0.0063;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130083693 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9426;ERATE=0.0004;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130083754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9105;ERATE=0.0009;THETA=0.0027;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130083817 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5114;ERATE=0.0004;THETA=0.0133;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130083819 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130083918 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8719;ERATE=0.0004;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130083994 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8414;ERATE=0.0004;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130083995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0442;AVGPOST=0.9987;RSQ=0.9869;ERATE=0.0003;THETA=0.0255;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130084014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8233;ERATE=0.0005;THETA=0.0106;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130084250 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130084371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0123;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130084385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130084465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.912;LDAF=0.5352;AVGPOST=0.9505;RSQ=0.9262;ERATE=0.0289;THETA=0.0239;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 130084520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6439;ERATE=0.0004;THETA=0.0133;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130084557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0196;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130084856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0062;AVGPOST=0.9985;RSQ=0.9061;ERATE=0.0004;THETA=0.0259;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130084925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.991;LDAF=0.5121;AVGPOST=0.9874;RSQ=0.9817;ERATE=0.0011;THETA=0.0061;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 130084937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7532;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130085083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085111 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6677;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130085211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0028;AVGPOST=0.9967;RSQ=0.6172;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130085265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8435;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130085347 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5293;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0004;THETA=0.0009;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 130085422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6440;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130085463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8844;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130085576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130085585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5779;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085848 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130085930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0306;AVGPOST=0.9992;RSQ=0.9929;ERATE=0.0003;THETA=0.0032;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130085997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130086010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.9759;AVGPOST=0.9971;RSQ=0.9577;ERATE=0.0004;THETA=0.0003;AC=2131;AN=2184 GT:DS:GL:BD 0.97573262 1 1 130086056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130086204 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0314;AVGPOST=0.9993;RSQ=0.9914;ERATE=0.0004;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 130086402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6261;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130086451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130086456 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130086578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9804;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130086655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130086698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2475;AVGPOST=0.9941;RSQ=0.9873;ERATE=0.0005;THETA=0.0012;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 130086989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9456;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130086990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6494;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130087043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3309;AVGPOST=0.9972;RSQ=0.9958;ERATE=0.0004;THETA=0.0007;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 130087166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5282;AVGPOST=0.9922;RSQ=0.9888;ERATE=0.0024;THETA=0.0005;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 130087311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1440;AVGPOST=0.9953;RSQ=0.9855;ERATE=0.0006;THETA=0.0005;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 130087341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9686;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130087391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0305;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130087485 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0309;AVGPOST=0.9993;RSQ=0.9895;ERATE=0.0004;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130087528 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5334;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130087581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5450;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130087602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9020;ERATE=0.0004;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130087613 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9539;ERATE=0.0003;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130087749 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8234;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130087757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130088105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0237;AVGPOST=0.9985;RSQ=0.9757;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130088178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130088205 . CCA C 81 PASS INDEL;BAVGPOST=0.997;BRSQ=0.568;LDAF=0.0079;AVGPOST=0.9907;RSQ=0.5200;ERATE=0.0018;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130088291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0568;AVGPOST=0.9991;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130088328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3274;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130088384 . G GA 113 PASS INDEL;BAVGPOST=0.988;BRSQ=0.503;LDAF=0.0154;AVGPOST=0.9791;RSQ=0.4571;ERATE=0.0047;THETA=0.0013;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130088463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0089;AVGPOST=0.9992;RSQ=0.9600;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130088577 . C CT 1232 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0142;AVGPOST=0.9959;RSQ=0.8871;ERATE=0.0005;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130088652 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6079;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130088667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7424;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130088758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7462;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130088826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130088923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9538;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130088924 . T TA 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4124;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130088937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5587;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130089079 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0051;AVGPOST=0.9970;RSQ=0.7681;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130089087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3841;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130089134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130089155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9458;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130089214 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8147;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130089355 . TAGAA T 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6677;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130089399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9398;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130089422 . AT A 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5514;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130089441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9423;ERATE=0.0003;THETA=0.0020;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130089590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0593;AVGPOST=0.9960;RSQ=0.9726;ERATE=0.0006;THETA=0.0009;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 130089730 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7395;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130089767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8625;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130089816 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8341;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130089939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5834;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130089978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9036;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130089989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130090102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3516;AVGPOST=0.9968;RSQ=0.9940;ERATE=0.0006;THETA=0.0006;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 130090182 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130090211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.0839;AVGPOST=0.9979;RSQ=0.9912;ERATE=0.0004;THETA=0.0015;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 130090230 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130090245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130090268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4247;AVGPOST=0.9945;RSQ=0.9917;ERATE=0.0009;THETA=0.0081;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 130090305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130090487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130090530 . T TA 232 PASS INDEL;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5891;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130090823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130090978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7144;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=1561;AN=2184 GT:DS:GL:BD 0.71474361 1 1 130091148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9218;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130091199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7142;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=1561;AN=2184 GT:DS:GL:BD 0.71474361 1 1 130091219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7441;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1626;AN=2184 GT:DS:GL:BD 0.74450547 1 1 130091264 . AG A 169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130091326 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2763;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 130091387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.7117;AVGPOST=0.9835;RSQ=0.9714;ERATE=0.0040;THETA=0.0005;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 130091500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.7534;AVGPOST=0.9977;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130091515 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1598;AVGPOST=0.9929;RSQ=0.9815;ERATE=0.0005;THETA=0.0004;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 130091535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130091586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7873;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130091609 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130091645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8662;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130091662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5328;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130091665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130091773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7481;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0005;THETA=0.0006;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 130091791 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8919;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130091818 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7527;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0006;THETA=0.0003;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130091876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130091941 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130091955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0109;AVGPOST=0.9989;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130091984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0325;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130091987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0177;AVGPOST=0.9991;RSQ=0.9832;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130091994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6813;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130092034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0330;AVGPOST=0.9990;RSQ=0.9892;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130092042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7869;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=1720;AN=2184 GT:DS:GL:BD 0.78754580 1 1 130092086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7527;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0004;THETA=0.0028;AC=1646;AN=2184 GT:DS:GL:BD 0.75366300 1 1 130092137 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0403;AVGPOST=0.9984;RSQ=0.9860;ERATE=0.0004;THETA=0.0007;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130092303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7537;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0004;THETA=0.0006;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130092428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130092462 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.8245;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=1803;AN=2184 GT:DS:GL:BD 0.82554942 1 1 130092689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7528;AVGPOST=0.9961;RSQ=0.9925;ERATE=0.0007;THETA=0.0003;AC=1645;AN=2184 GT:DS:GL:BD 0.75320512 1 1 130092703 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0422;AVGPOST=0.9985;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 130092748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0261;AVGPOST=0.9968;RSQ=0.9509;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130092764 rs67801907 ATTG A 64380 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7539;AVGPOST=0.9940;RSQ=0.9875;ERATE=0.0010;THETA=0.0006;AC=1649;AN=2184 GT:DS:GL:BD 0.75503665 1 1 130092786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130092837 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5668;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130092879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4864;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093054 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6644;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9726;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130093207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6362;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8776;ERATE=0.0003;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130093291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0067;AVGPOST=0.9983;RSQ=0.8865;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130093340 . CTG C 5721 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0322;AVGPOST=0.9994;RSQ=0.9922;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130093347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9194;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130093499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130093517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130093539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7157;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130093579 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7190;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130093582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9120;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130093618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1339;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130093830 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.5110;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130093909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1353;AVGPOST=0.9969;RSQ=0.9885;ERATE=0.0009;THETA=0.0005;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 130093937 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.8969;AVGPOST=0.9971;RSQ=0.9877;ERATE=0.0008;THETA=0.0002;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 130094057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.973;LDAF=0.1359;AVGPOST=0.9953;RSQ=0.9834;ERATE=0.0012;THETA=0.0003;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 130094084 . AAT A 2420 PASS INDEL;BAVGPOST=0.959;BRSQ=0.800;LDAF=0.1080;AVGPOST=0.9681;RSQ=0.8811;ERATE=0.0005;THETA=0.0009;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 130094130 rs10658761 TA T 519 PASS INDEL;BAVGPOST=0.946;BRSQ=0.801;LDAF=0.1184;AVGPOST=0.9613;RSQ=0.8851;ERATE=0.0004;THETA=0.0002;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 130094132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6592;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130094349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9259;ERATE=0.0023;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130094392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130094399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2869;AVGPOST=0.9940;RSQ=0.9886;ERATE=0.0023;THETA=0.0002;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 130094609 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4440;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130094648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130094680 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8367;ERATE=0.0005;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130094764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.8088;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130094956 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4639;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130094969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0370;AVGPOST=0.9962;RSQ=0.9590;ERATE=0.0006;THETA=0.0027;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130095086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.9781;AVGPOST=0.9973;RSQ=0.9500;ERATE=0.0006;THETA=0.0006;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 130095150 . T TG 1023 PASS INDEL;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0346;AVGPOST=0.9945;RSQ=0.9319;ERATE=0.0013;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130095197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2386;AVGPOST=0.9935;RSQ=0.9871;ERATE=0.0006;THETA=0.0004;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 130095212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.1860;AVGPOST=0.9934;RSQ=0.9868;ERATE=0.0004;THETA=0.0004;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 130095216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0090;AVGPOST=0.9987;RSQ=0.9434;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130095327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.9826;AVGPOST=0.9941;RSQ=0.8729;ERATE=0.0005;THETA=0.0003;AC=2150;AN=2184 GT:DS:GL:BD 0.98443222 1 1 130095451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.9067;ERATE=0.0002;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130095472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4867;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130095493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130095496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5360;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0007;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 130095526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1452;AVGPOST=0.9972;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 130095635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0445;AVGPOST=0.9992;RSQ=0.9926;ERATE=0.0002;THETA=0.0003;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 130096162 . A AT 406 PASS INDEL;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0118;AVGPOST=0.9969;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130096191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0446;AVGPOST=0.9990;RSQ=0.9908;ERATE=0.0003;THETA=0.0043;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 130096227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9823;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130096238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7462;AVGPOST=0.9964;RSQ=0.9931;ERATE=0.0006;THETA=0.0006;AC=1629;AN=2184 GT:DS:GL:BD 0.74587911 1 1 130096275 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0134;AVGPOST=0.9987;RSQ=0.9592;ERATE=0.0002;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130096362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9984;AVGPOST=0.9987;RSQ=0.6314;ERATE=0.0004;THETA=0.0004;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 130096522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0257;AVGPOST=0.9989;RSQ=0.9825;ERATE=0.0003;THETA=0.0020;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130096540 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.5237;AVGPOST=0.9960;RSQ=0.9938;ERATE=0.0007;THETA=0.0029;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 130096541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130096543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.868;LDAF=0.0244;AVGPOST=0.9935;RSQ=0.8990;ERATE=0.0007;THETA=0.0011;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130096548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7053;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130096566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130096815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130096894 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130096986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5202;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0004;THETA=0.0003;AC=1136;AN=2184 GT:DS:GL:BD 0.52014655 1 1 130097008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6351;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130097184 . T TC 11884 PASS INDEL;BAVGPOST=0.974;BRSQ=0.953;LDAF=0.5057;AVGPOST=0.9630;RSQ=0.9491;ERATE=0.0080;THETA=0.0002;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 130097230 rs35551640 C CA 61749 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5265;AVGPOST=0.9978;RSQ=0.9967;ERATE=0.0007;THETA=0.0003;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 130097231 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3695;AVGPOST=0.9973;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 130097263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130097309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4303;AVGPOST=0.9976;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=940;AN=2184 GT:DS:GL:BD 0.43040293 0 1 130097325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0391;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130097411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9238;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130097601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8065;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130097693 . TG T 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3786;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130097718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130097844 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3627;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 130097951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9980;RSQ=0.9139;ERATE=0.0002;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130098247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9993;RSQ=0.9857;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130098428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0002;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130098443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130098557 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5485;AVGPOST=0.9973;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 130098646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9674;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130098693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6028;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130098807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7207;ERATE=0.0014;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130098856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0553;AVGPOST=0.9996;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130098907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5807;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130098958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.964;LDAF=0.1422;AVGPOST=0.9933;RSQ=0.9801;ERATE=0.0008;THETA=0.0007;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 130098961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1436;AVGPOST=0.9990;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 130099011 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3242;AVGPOST=0.9970;RSQ=0.9949;ERATE=0.0005;THETA=0.0003;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 130099040 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0562;AVGPOST=0.9984;RSQ=0.9896;ERATE=0.0004;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130099055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1593;AVGPOST=0.9950;RSQ=0.9871;ERATE=0.0006;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130099084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3767;AVGPOST=0.9916;RSQ=0.9869;ERATE=0.0019;THETA=0.0003;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 130099154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0132;AVGPOST=0.9985;RSQ=0.9483;ERATE=0.0002;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130099160 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9981;RSQ=0.8965;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130099177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130099528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130099558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8119;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130099600 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9209;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130099621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.7960;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130099634 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5202;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130099641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9002;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130099695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1440;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130099800 rs113680002 G GA 635 PASS INDEL;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0110;AVGPOST=0.9994;RSQ=0.9761;ERATE=0.0004;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130099814 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0579;AVGPOST=0.9948;RSQ=0.9664;ERATE=0.0004;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 130099877 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1388;AVGPOST=0.9870;RSQ=0.9629;ERATE=0.0003;THETA=0.0002;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 130100094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130100106 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.961;LDAF=0.3417;AVGPOST=0.9876;RSQ=0.9806;ERATE=0.0007;THETA=0.0004;AC=744;AN=2184 GT:DS:GL:BD 0.34065935 0 1 130100121 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0196;AVGPOST=0.9953;RSQ=0.9100;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130100157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.846;LDAF=0.9139;AVGPOST=0.9653;RSQ=0.8593;ERATE=0.0020;THETA=0.0003;AC=2012;AN=2184 GT:DS:GL:BD 0.92124540 1 1 130100167 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9763;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130100211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.9275;AVGPOST=0.9955;RSQ=0.9754;ERATE=0.0009;THETA=0.0003;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 130100262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.625;LDAF=0.0129;AVGPOST=0.9894;RSQ=0.6760;ERATE=0.0010;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130100273 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.877;LDAF=0.0362;AVGPOST=0.9910;RSQ=0.9141;ERATE=0.0005;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130100313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.782;LDAF=0.0095;AVGPOST=0.9912;RSQ=0.6140;ERATE=0.0012;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130100338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.884;LDAF=0.0673;AVGPOST=0.9889;RSQ=0.9333;ERATE=0.0008;THETA=0.0003;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 130100340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0130;AVGPOST=0.9974;RSQ=0.9130;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130100364 . C CA 1097 PASS INDEL;BAVGPOST=0.902;BRSQ=0.488;LDAF=0.1041;AVGPOST=0.9125;RSQ=0.6872;ERATE=0.0019;THETA=0.0001;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 130100365 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.674;LDAF=0.0205;AVGPOST=0.9914;RSQ=0.8394;ERATE=0.0007;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130100406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.615;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9438;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130100575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.924;LDAF=0.0289;AVGPOST=0.9959;RSQ=0.9462;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130100586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.912;LDAF=0.3479;AVGPOST=0.9712;RSQ=0.9558;ERATE=0.0013;THETA=0.0003;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 130100639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8828;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130100799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3598;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0006;THETA=0.0001;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 130100811 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130100847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9756;ERATE=0.0002;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130100876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6630;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130100896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.513;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130100956 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6283;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130100982 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.817;LDAF=0.0545;AVGPOST=0.9966;RSQ=0.9726;ERATE=0.0004;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130101043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0059;AVGPOST=0.9977;RSQ=0.8447;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130101177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0557;AVGPOST=0.9978;RSQ=0.9819;ERATE=0.0006;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130101214 rs71593292 C CT 8818 PASS INDEL;BAVGPOST=0.884;BRSQ=0.773;LDAF=0.3168;AVGPOST=0.8757;RSQ=0.7953;ERATE=0.0159;THETA=0.0003;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 130101257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0076;AVGPOST=0.9879;RSQ=0.4005;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130101388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0866;AVGPOST=0.9947;RSQ=0.9726;ERATE=0.0007;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 130101570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.956;LDAF=0.1372;AVGPOST=0.9828;RSQ=0.9516;ERATE=0.0008;THETA=0.0003;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 130101571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.915;LDAF=0.1782;AVGPOST=0.9741;RSQ=0.9416;ERATE=0.0009;THETA=0.0003;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 130101572 . T TAACA 515 PASS INDEL;BAVGPOST=0.967;BRSQ=0.350;LDAF=0.0351;AVGPOST=0.9564;RSQ=0.5058;ERATE=0.0049;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130101968 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8043;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130102014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2109;AVGPOST=0.9971;RSQ=0.9932;ERATE=0.0004;THETA=0.0008;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 130102064 . A ACTT 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0036;AVGPOST=0.9958;RSQ=0.4788;ERATE=0.0006;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130102066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3785;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 130102067 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6592;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130102070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.922;LDAF=0.0338;AVGPOST=0.9907;RSQ=0.9045;ERATE=0.0005;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130102104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.817;LDAF=0.8853;AVGPOST=0.9432;RSQ=0.8062;ERATE=0.0068;THETA=0.0003;AC=1957;AN=2184 GT:DS:GL:BD 0.89606225 1 1 130102116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0029;AVGPOST=0.9965;RSQ=0.5083;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130102209 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.798;LDAF=0.8495;AVGPOST=0.9185;RSQ=0.7864;ERATE=0.0109;THETA=0.0004;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 130102212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.938;LDAF=0.1592;AVGPOST=0.9927;RSQ=0.9798;ERATE=0.0007;THETA=0.0003;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 130102277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.954;LDAF=0.0553;AVGPOST=0.9991;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130102336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.852;LDAF=0.1569;AVGPOST=0.9908;RSQ=0.9750;ERATE=0.0004;THETA=0.0004;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130102337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.934;LDAF=0.3564;AVGPOST=0.9497;RSQ=0.9202;ERATE=0.0081;THETA=0.0003;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 130102353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.2077;AVGPOST=0.9957;RSQ=0.9902;ERATE=0.0008;THETA=0.0004;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 130102562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130102568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4710;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130102609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5945;AVGPOST=0.9963;RSQ=0.9945;ERATE=0.0006;THETA=0.0005;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 130102655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0078;AVGPOST=0.9982;RSQ=0.9117;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130102808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7187;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130102885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3691;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130102888 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.3320;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130102993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0272;AVGPOST=0.9984;RSQ=0.9747;ERATE=0.0005;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130103027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.944;LDAF=0.2215;AVGPOST=0.9823;RSQ=0.9631;ERATE=0.0016;THETA=0.0005;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 130103105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.804;BRSQ=0.677;LDAF=0.3377;AVGPOST=0.8235;RSQ=0.7366;ERATE=0.0182;THETA=0.0003;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 130103163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.837;BRSQ=0.753;LDAF=0.4525;AVGPOST=0.8422;RSQ=0.7931;ERATE=0.0167;THETA=0.0004;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 130103207 . CAGCAT C 9438 PASS INDEL;BAVGPOST=0.948;BRSQ=0.825;LDAF=0.1545;AVGPOST=0.9785;RSQ=0.9439;ERATE=0.0013;THETA=0.0002;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 130103319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.706;LDAF=0.8499;AVGPOST=0.9028;RSQ=0.7323;ERATE=0.0101;THETA=0.0010;AC=1911;AN=2184 GT:DS:GL:BD 0.87500000 1 1 130103324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.7197;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130103610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130103623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2122;AVGPOST=0.9931;RSQ=0.9847;ERATE=0.0006;THETA=0.0005;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 130103661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.960;LDAF=0.3634;AVGPOST=0.9808;RSQ=0.9714;ERATE=0.0019;THETA=0.0007;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 130103706 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3769;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0005;THETA=0.0005;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 130103813 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0137;AVGPOST=0.9949;RSQ=0.8566;ERATE=0.0003;THETA=0.0014;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130103901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2053;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0003;THETA=0.0009;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 130103927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9634;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130103946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2285;AVGPOST=0.9962;RSQ=0.9909;ERATE=0.0004;THETA=0.0004;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 130103970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130103971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9997;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130104030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130104082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0264;AVGPOST=0.9992;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130104146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1155;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 130104229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0666;AVGPOST=0.9984;RSQ=0.9910;ERATE=0.0004;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 130104286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130104300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130104301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2053;AVGPOST=0.9986;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 130104409 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7654;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130104533 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130104537 rs71097685 A AAG 22125 PASS INDEL;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1992;AVGPOST=0.9967;RSQ=0.9922;ERATE=0.0006;THETA=0.0009;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 130104640 . AAAGG A 28012 PASS INDEL;BAVGPOST=0.898;BRSQ=0.806;LDAF=0.6271;AVGPOST=0.8339;RSQ=0.7341;ERATE=0.0463;THETA=0.0006;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 130104673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.850;BRSQ=0.669;LDAF=0.5577;AVGPOST=0.8173;RSQ=0.6662;ERATE=0.0827;THETA=0.0004;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 130104689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.563;LDAF=0.0846;AVGPOST=0.9177;RSQ=0.5729;ERATE=0.0138;THETA=0.0006;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 130104693 . G GA 2896 PASS INDEL;BAVGPOST=0.980;BRSQ=0.849;LDAF=0.0770;AVGPOST=0.9818;RSQ=0.9014;ERATE=0.0010;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130104716 rs71097686 A AG 1179 PASS INDEL;BAVGPOST=0.954;BRSQ=0.634;LDAF=0.0606;AVGPOST=0.9725;RSQ=0.8288;ERATE=0.0005;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130104731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130104775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6008;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130104895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8311;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130104924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0066;AVGPOST=0.9991;RSQ=0.9409;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130105031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130105036 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2933;AVGPOST=0.9961;RSQ=0.9931;ERATE=0.0004;THETA=0.0004;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 130105048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1989;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0005;THETA=0.0009;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 130105082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1729;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0007;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 130105136 . ACT A 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5826;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130105223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130105330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8952;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130105530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130105675 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7449;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130105703 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9674;AVGPOST=0.9989;RSQ=0.9889;ERATE=0.0003;THETA=0.0005;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 130105742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0198;AVGPOST=0.9988;RSQ=0.9759;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130105789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7414;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130105855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.929;LDAF=0.9660;AVGPOST=0.9970;RSQ=0.9679;ERATE=0.0005;THETA=0.0028;AC=2113;AN=2184 GT:DS:GL:BD 0.96749085 1 1 130105861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.5119;AVGPOST=0.9828;RSQ=0.9758;ERATE=0.0044;THETA=0.0011;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 130105862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.928;LDAF=0.1720;AVGPOST=0.9942;RSQ=0.9845;ERATE=0.0004;THETA=0.0006;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 130105923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0200;AVGPOST=0.9984;RSQ=0.9668;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130105960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.902;LDAF=0.0787;AVGPOST=0.9863;RSQ=0.9352;ERATE=0.0006;THETA=0.0024;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 130105961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.908;LDAF=0.1619;AVGPOST=0.9843;RSQ=0.9576;ERATE=0.0007;THETA=0.0010;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130105969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.889;LDAF=0.0217;AVGPOST=0.9976;RSQ=0.9567;ERATE=0.0004;THETA=0.0011;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130105986 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.898;LDAF=0.1499;AVGPOST=0.9786;RSQ=0.9367;ERATE=0.0040;THETA=0.0005;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 130106143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.693;LDAF=0.9251;AVGPOST=0.9319;RSQ=0.6386;ERATE=0.0116;THETA=0.0007;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 130106178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.933;LDAF=0.0830;AVGPOST=0.9952;RSQ=0.9758;ERATE=0.0006;THETA=0.0009;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 130106179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130106282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.6008;ERATE=0.0004;THETA=0.0034;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130106334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.969;LDAF=0.1528;AVGPOST=0.9923;RSQ=0.9800;ERATE=0.0006;THETA=0.0017;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 130106407 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5809;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130106411 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0823;AVGPOST=0.9964;RSQ=0.9829;ERATE=0.0004;THETA=0.0008;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 130106425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.975;LDAF=0.1733;AVGPOST=0.9945;RSQ=0.9868;ERATE=0.0004;THETA=0.0023;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 130106431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.1731;AVGPOST=0.9967;RSQ=0.9917;ERATE=0.0004;THETA=0.0041;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 130106473 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0077;AVGPOST=0.9969;RSQ=0.8398;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130106484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5424;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130106532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.3055;AVGPOST=0.9833;RSQ=0.9698;ERATE=0.0020;THETA=0.0034;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 130106545 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.1737;AVGPOST=0.9919;RSQ=0.9814;ERATE=0.0007;THETA=0.0114;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 130106575 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0063;AVGPOST=0.9980;RSQ=0.8736;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130106619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0062;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130106795 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130106868 . GA G 988 PASS INDEL;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9062;ERATE=0.0006;THETA=0.0041;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130106898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9600;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130106916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0340;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0003;THETA=0.0034;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130106979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8762;ERATE=0.0003;THETA=0.0055;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130107047 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0817;AVGPOST=0.9973;RSQ=0.9883;ERATE=0.0005;THETA=0.0005;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 130107102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130107137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2326;AVGPOST=0.9926;RSQ=0.9859;ERATE=0.0004;THETA=0.0044;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 130107160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2611;AVGPOST=0.9930;RSQ=0.9859;ERATE=0.0004;THETA=0.0034;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 130107164 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.980;LDAF=0.4067;AVGPOST=0.9880;RSQ=0.9833;ERATE=0.0008;THETA=0.0096;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 130107186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9287;ERATE=0.0005;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130107193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.2097;AVGPOST=0.9925;RSQ=0.9869;ERATE=0.0018;THETA=0.0157;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 130107195 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0118;AVGPOST=0.9986;RSQ=0.9610;ERATE=0.0003;THETA=0.0081;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130107275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0375;AVGPOST=0.9987;RSQ=0.9870;ERATE=0.0003;THETA=0.0102;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130107304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.2939;AVGPOST=0.9807;RSQ=0.9638;ERATE=0.0072;THETA=0.0134;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 130107402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130107466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.960;LDAF=0.1208;AVGPOST=0.9913;RSQ=0.9700;ERATE=0.0026;THETA=0.0057;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 130107468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.940;LDAF=0.1142;AVGPOST=0.9855;RSQ=0.9483;ERATE=0.0009;THETA=0.0054;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 130107534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.893;LDAF=0.0083;AVGPOST=0.9978;RSQ=0.8920;ERATE=0.0003;THETA=0.0082;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130107551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.962;LDAF=0.5930;AVGPOST=0.9694;RSQ=0.9630;ERATE=0.0056;THETA=0.0092;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 130107604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130107643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0130;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130107707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0195;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130107719 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9296;ERATE=0.0003;THETA=0.0109;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130107737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8161;ERATE=0.0003;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130107748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130107836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8454;ERATE=0.0010;THETA=0.0091;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130107875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6533;ERATE=0.0003;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130108092 . AT A 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4877;ERATE=0.0007;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130108100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0280;AVGPOST=0.9963;RSQ=0.9506;ERATE=0.0009;THETA=0.0173;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130108101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7986;ERATE=0.0004;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130108133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.0932;AVGPOST=0.9944;RSQ=0.9751;ERATE=0.0004;THETA=0.0079;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 130108150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9287;ERATE=0.0004;THETA=0.0091;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130108181 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9316;ERATE=0.0003;THETA=0.0064;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130108227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4828;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130108274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0302;AVGPOST=0.9965;RSQ=0.9553;ERATE=0.0005;THETA=0.0075;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130108280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.960;LDAF=0.1520;AVGPOST=0.9878;RSQ=0.9648;ERATE=0.0010;THETA=0.0175;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 130108296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0004;THETA=0.0272;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130108418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8712;ERATE=0.0006;THETA=0.0316;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130108443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0004;THETA=0.0209;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130108573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0182;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130108582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7878;ERATE=0.0006;THETA=0.0209;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130108645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7939;ERATE=0.0003;THETA=0.0192;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130108673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0305;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130108688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9365;ERATE=0.0003;THETA=0.0156;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130108714 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.936;LDAF=0.1405;AVGPOST=0.9812;RSQ=0.9427;ERATE=0.0108;THETA=0.0127;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 130108744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8750;ERATE=0.0007;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130108794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130108811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.919;LDAF=0.4933;AVGPOST=0.9512;RSQ=0.9307;ERATE=0.0300;THETA=0.0137;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 130108860 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0062;AVGPOST=0.9990;RSQ=0.9478;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130108954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7496;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130108981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130108987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9599;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130109000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9357;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0002;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 130109043 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3536;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 130109095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0310;AVGPOST=0.9992;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130109191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130109212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0386;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 130109376 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130109638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5367;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130109663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130109739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6692;ERATE=0.0005;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130109954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.3770;ERATE=0.0003;THETA=0.0075;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130109979 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130110189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130110201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0143;AVGPOST=0.9988;RSQ=0.9648;ERATE=0.0005;THETA=0.0037;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130110205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6861;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130110245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4554;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130110459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9375;AVGPOST=0.9974;RSQ=0.9854;ERATE=0.0004;THETA=0.0010;AC=2046;AN=2184 GT:DS:GL:BD 0.93681318 1 1 130110498 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5973;ERATE=0.0008;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130110633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6041;AVGPOST=0.9915;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 130110644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.6037;AVGPOST=0.9897;RSQ=0.9853;ERATE=0.0006;THETA=0.0100;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 130110646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130110711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9361;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130110788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130110968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0407;AVGPOST=0.9965;RSQ=0.9711;ERATE=0.0005;THETA=0.0029;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130110972 rs71299089 A AGCT 22884 PASS INDEL;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.1663;AVGPOST=0.9854;RSQ=0.9636;ERATE=0.0009;THETA=0.0004;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 130111093 . G GC 2033 PASS INDEL;BAVGPOST=0.964;BRSQ=0.870;LDAF=0.1564;AVGPOST=0.9801;RSQ=0.9448;ERATE=0.0006;THETA=0.0017;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 130111097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8445;ERATE=0.0003;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130111098 . A ATATCG 2849 PASS INDEL;BAVGPOST=0.994;BRSQ=0.850;LDAF=0.0173;AVGPOST=0.9960;RSQ=0.9109;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130111235 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130111279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9226;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130111312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.7051;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130111325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8078;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130111501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9310;ERATE=0.0003;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130111546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9114;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130111587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6131;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130111608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130111635 . A AT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130111665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7288;ERATE=0.0004;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130111676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.4684;AVGPOST=0.9890;RSQ=0.9844;ERATE=0.0007;THETA=0.0007;AC=1024;AN=2184 GT:DS:GL:BD 0.46886447 0 1 130111712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.8130;ERATE=0.0004;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130111749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0004;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130111794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8655;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130111823 . AAC A 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130111830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9041;ERATE=0.0003;THETA=0.0148;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130111890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6203;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130111925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9265;ERATE=0.0003;THETA=0.0095;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130111967 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0073;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130111996 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0059;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130112129 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8215;ERATE=0.0009;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130112172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5049;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130112303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6674;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130112421 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0085;AVGPOST=0.9973;RSQ=0.8780;ERATE=0.0003;THETA=0.0025;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130112577 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5800;AVGPOST=0.9961;RSQ=0.9936;ERATE=0.0006;THETA=0.0006;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 130112615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7438;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130112722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3361;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0005;THETA=0.0003;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 130112735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0210;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0003;THETA=0.0047;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130112808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0256;AVGPOST=0.9972;RSQ=0.9659;ERATE=0.0003;THETA=0.0014;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130112826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2927;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 130113009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.9058;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130113054 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9174;AVGPOST=0.9986;RSQ=0.9930;ERATE=0.0004;THETA=0.0002;AC=2003;AN=2184 GT:DS:GL:BD 0.91712457 1 1 130113141 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3780;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0001;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 130113241 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0866;AVGPOST=0.9990;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 130113308 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130113324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130113439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9667;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130113542 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2928;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0004;THETA=0.0006;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 130113547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5096;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130113736 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4967;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130113810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3691;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 130113847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130113918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8286;ERATE=0.0003;THETA=0.0210;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130114020 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8439;ERATE=0.0010;THETA=0.0211;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130114253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5547;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130114262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.923;LDAF=0.4049;AVGPOST=0.9561;RSQ=0.9384;ERATE=0.0014;THETA=0.0052;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 130114293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4333;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130114361 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.852;LDAF=0.0505;AVGPOST=0.9818;RSQ=0.8620;ERATE=0.0004;THETA=0.0028;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 130114379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.924;LDAF=0.1610;AVGPOST=0.9754;RSQ=0.9302;ERATE=0.0023;THETA=0.0055;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 130114441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0173;AVGPOST=0.9987;RSQ=0.9663;ERATE=0.0009;THETA=0.0098;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130114491 . T TA 6672 PASS INDEL;BAVGPOST=0.987;BRSQ=0.912;LDAF=0.0537;AVGPOST=0.9896;RSQ=0.9317;ERATE=0.0004;THETA=0.0046;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 130114552 . G GC 311 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8990;ERATE=0.0003;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130114587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130114632 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9804;ERATE=0.0003;THETA=0.0111;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130114638 . TA T 4283 PASS INDEL;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0280;AVGPOST=0.9987;RSQ=0.9802;ERATE=0.0003;THETA=0.0033;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130114689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0130;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130114794 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5017;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130114867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6564;ERATE=0.0002;THETA=0.0060;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130114910 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8552;ERATE=0.0004;THETA=0.0061;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130114919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6667;ERATE=0.0003;THETA=0.0106;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130115085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130115117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6759;ERATE=0.0003;THETA=0.0112;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130115228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9385;ERATE=0.0004;THETA=0.0048;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130115292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130115299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7048;ERATE=0.0003;THETA=0.0158;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130115355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.932;LDAF=0.2783;AVGPOST=0.9578;RSQ=0.9263;ERATE=0.0066;THETA=0.0074;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 130115381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9358;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130115455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4808;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130115584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6596;ERATE=0.0003;THETA=0.0077;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130115635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3318;ERATE=0.0003;THETA=0.0039;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130115656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0362;AVGPOST=0.9986;RSQ=0.9851;ERATE=0.0004;THETA=0.0009;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130115657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0771;AVGPOST=0.9978;RSQ=0.9907;ERATE=0.0003;THETA=0.0013;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 130115700 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0170;AVGPOST=0.9954;RSQ=0.8845;ERATE=0.0007;THETA=0.0054;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130115765 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7925;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130115862 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0002;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130115941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0144;AVGPOST=0.9996;RSQ=0.9880;ERATE=0.0003;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130115989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7957;ERATE=0.0006;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130116062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130116118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0779;AVGPOST=0.9974;RSQ=0.9886;ERATE=0.0006;THETA=0.0006;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 130116158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4603;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130116183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.699;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6986;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130116229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.1772;AVGPOST=0.9898;RSQ=0.9742;ERATE=0.0005;THETA=0.0004;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130116268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5263;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130116284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.971;LDAF=0.1606;AVGPOST=0.9819;RSQ=0.9478;ERATE=0.0030;THETA=0.0008;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 130116404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.691;LDAF=0.0060;AVGPOST=0.9956;RSQ=0.6865;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130116428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0992;AVGPOST=0.9965;RSQ=0.9882;ERATE=0.0004;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 130116600 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7974;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130116825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0793;AVGPOST=0.9959;RSQ=0.9840;ERATE=0.0005;THETA=0.0004;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 130116888 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130116978 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.967;LDAF=0.0985;AVGPOST=0.9978;RSQ=0.9925;ERATE=0.0003;THETA=0.0006;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 130117009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.803;LDAF=0.0131;AVGPOST=0.9941;RSQ=0.8259;ERATE=0.0005;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130117048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6617;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130117108 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0184;AVGPOST=0.9994;RSQ=0.9847;ERATE=0.0003;THETA=0.0023;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130117119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.8980;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130117151 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130117233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130117234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8571;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130117248 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5162;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130117274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6470;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130117283 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9621;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130117364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0434;AVGPOST=0.9970;RSQ=0.9706;ERATE=0.0005;THETA=0.0017;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130117407 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4930;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130117484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8529;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130117522 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130117530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5418;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130117604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1782;AVGPOST=0.9955;RSQ=0.9884;ERATE=0.0003;THETA=0.0006;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130117605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130117672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.989;LDAF=0.3715;AVGPOST=0.9904;RSQ=0.9864;ERATE=0.0004;THETA=0.0005;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 130117688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9321;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130117951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7936;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130117960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130118120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130118122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9692;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130118125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.7391;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130118351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130118540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0143;AVGPOST=0.9986;RSQ=0.9590;ERATE=0.0004;THETA=0.0045;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130118581 . CCA C 414 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6598;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130118611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130118761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130118806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.8963;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130118845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130118854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5078;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130119122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.509;LDAF=0.0035;AVGPOST=0.9955;RSQ=0.5148;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130119123 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0367;AVGPOST=0.9962;RSQ=0.9616;ERATE=0.0004;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130119140 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7684;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130119196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5398;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130119210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9600;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130119220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1042;AVGPOST=0.9973;RSQ=0.9879;ERATE=0.0007;THETA=0.0003;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 130119233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.920;LDAF=0.0383;AVGPOST=0.9900;RSQ=0.8956;ERATE=0.0005;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130119265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5030;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130119321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130119337 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0178;AVGPOST=0.9946;RSQ=0.8977;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130119425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6347;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130119452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8391;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130119456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2436;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0005;THETA=0.0002;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 130119745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130119795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 130119852 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0070;AVGPOST=0.9913;RSQ=0.5367;ERATE=0.0015;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130119921 rs71299463 CA C 8539 PASS INDEL;BAVGPOST=0.864;BRSQ=0.779;LDAF=0.4609;AVGPOST=0.8384;RSQ=0.7769;ERATE=0.0271;THETA=0.0002;AC=1044;AN=2184 GT:DS:GL:BD 0.47802198 0 1 130119923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8756;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130119948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6927;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130119975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8884;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130119988 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9982;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 130120087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2438;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0007;THETA=0.0001;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 130120530 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130120536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9442;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130120546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0102;AVGPOST=0.9994;RSQ=0.9706;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130120571 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130120598 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130120746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130120755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0524;AVGPOST=0.9979;RSQ=0.9849;ERATE=0.0003;THETA=0.0002;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 130120768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130120864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130120917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3830;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 130120967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9979;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 130120976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9866;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130121003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130121004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9596;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130121012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130121137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130121330 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130121365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1739;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 130121388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7686;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130121400 . AAAG A 578 PASS INDEL;BAVGPOST=0.997;BRSQ=0.700;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9315;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130121457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130121583 . A AAGAT 1053 PASS INDEL;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0076;AVGPOST=0.9979;RSQ=0.8858;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130121775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1035;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 130121937 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9025;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130121955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130121974 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2429;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0002;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 130122059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1035;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 130122295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.999;LDAF=0.3831;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0003;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 130122317 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9689;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130122499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130122565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130122755 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6964;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130123045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1035;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 130123186 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130123192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9180;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130123303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130123317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130123338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130123458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130123459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.1736;AVGPOST=0.9939;RSQ=0.9826;ERATE=0.0004;THETA=0.0002;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 130123492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130123518 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130123609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7631;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130123820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130123898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1738;AVGPOST=0.9981;RSQ=0.9945;ERATE=0.0005;THETA=0.0005;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 130123920 . T TA 58 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0069;AVGPOST=0.9926;RSQ=0.6451;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130123928 rs67903807 CA C 1034 PASS INDEL;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0132;AVGPOST=0.9990;RSQ=0.9685;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130123936 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6749;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130123952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.5210;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130123975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6923;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130124067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124084 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4837;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124114 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124619 . TAG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7804;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130124780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6915;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124828 . AGGT A 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130124859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9359;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130124875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9608;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130124889 . GGT G 577 PASS INDEL;BAVGPOST=0.946;BRSQ=0.567;LDAF=0.0962;AVGPOST=0.9063;RSQ=0.5459;ERATE=0.0293;THETA=0.0008;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 130124959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.799;LDAF=0.0267;AVGPOST=0.9936;RSQ=0.8989;ERATE=0.0012;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130124971 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.950;LDAF=0.3443;AVGPOST=0.9716;RSQ=0.9547;ERATE=0.0097;THETA=0.0004;AC=756;AN=2184 GT:DS:GL:BD 0.34615386 0 1 130124973 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130125090 . TA T 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0030;AVGPOST=0.9966;RSQ=0.5495;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130125162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130125238 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5122;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130125299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3326;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0003;THETA=0.0036;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 130125385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8468;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130125394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130125397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7885;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130125562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4411;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130125643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9772;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130125644 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3438;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 130125696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3444;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0005;THETA=0.0008;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 130125786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7175;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130125883 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6125;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130126174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130126177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9605;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130126285 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130126382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1829;AVGPOST=0.9981;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 130126391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6689;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130126424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0122;AVGPOST=0.9982;RSQ=0.9403;ERATE=0.0002;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130126506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3435;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0006;THETA=0.0005;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 130126531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130126594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130126603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9868;ERATE=0.0002;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130126656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130126683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1281;AVGPOST=0.9979;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 130126759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8857;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130126960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0390;AVGPOST=0.9990;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130127003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.8088;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130127031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130127063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9922;ERATE=0.0002;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130127081 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9330;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130127120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130127141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7725;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130127157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130127158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7479;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130127201 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0093;AVGPOST=0.9992;RSQ=0.9636;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130127205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7927;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130127262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3441;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 130127278 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130127342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130127366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8041;ERATE=0.0003;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130127404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.9243;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130127551 . TA T 428 PASS INDEL;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7642;ERATE=0.0010;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130127630 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130127698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.933;LDAF=0.0316;AVGPOST=0.9950;RSQ=0.9495;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130127735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0823;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0002;THETA=0.0008;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 130127931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.6014;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130128220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0125;AVGPOST=0.9952;RSQ=0.8725;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130128244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3422;AVGPOST=0.9974;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 130128279 . TC T 137 PASS INDEL;BAVGPOST=0.997;BRSQ=0.581;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6500;ERATE=0.0009;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130128343 . CCT C 241 PASS INDEL;BAVGPOST=0.994;BRSQ=0.934;LDAF=0.0369;AVGPOST=0.9945;RSQ=0.9429;ERATE=0.0005;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130128373 . CTCTT C 5408 PASS INDEL;BAVGPOST=0.995;BRSQ=0.935;LDAF=0.0385;AVGPOST=0.9924;RSQ=0.9229;ERATE=0.0013;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130128374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0086;AVGPOST=0.9987;RSQ=0.9409;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130128392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.955;LDAF=0.3250;AVGPOST=0.9872;RSQ=0.9790;ERATE=0.0025;THETA=0.0006;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 130128407 . CTCTT C 307 PASS INDEL;BAVGPOST=0.995;BRSQ=0.582;LDAF=0.0187;AVGPOST=0.9808;RSQ=0.6084;ERATE=0.0019;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130128444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.493;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.4411;ERATE=0.0011;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130128462 . ATTTC A 171 PASS INDEL;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0051;AVGPOST=0.9925;RSQ=0.4076;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130128462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9867;ERATE=0.0002;THETA=0.0040;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130128710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4680;AVGPOST=0.9707;RSQ=0.9582;ERATE=0.0058;THETA=0.0005;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 130128771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130128878 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6849;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130128919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9475;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130128966 . AG A 10625 PASS INDEL;BAVGPOST=0.964;BRSQ=0.937;LDAF=0.5379;AVGPOST=0.9073;RSQ=0.8593;ERATE=0.0157;THETA=0.0006;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 130128983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9671;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130129121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4749;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0009;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 130129242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9876;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130129577 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130129634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130129694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.9015;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130129756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130129820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0081;AVGPOST=0.9990;RSQ=0.9437;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130129828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130129835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9566;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130129884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0233;AVGPOST=0.9989;RSQ=0.9839;ERATE=0.0003;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130129946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8376;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130129955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130129981 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130129984 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0298;AVGPOST=0.9991;RSQ=0.9887;ERATE=0.0003;THETA=0.0008;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130130150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7794;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9250;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130130339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6112;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0150;AVGPOST=0.9989;RSQ=0.9670;ERATE=0.0003;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130130548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130130606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0212;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0003;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130130621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7636;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130130715 . A AT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7093;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130130741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5646;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130832 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4637;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130130845 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.875;LDAF=0.0416;AVGPOST=0.9879;RSQ=0.8851;ERATE=0.0005;THETA=0.0011;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130130891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130130985 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9375;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130131000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8896;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130131144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.5241;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130131205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5946;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130131211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5020;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130131251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5998;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130131267 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.5506;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130131285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8622;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130131732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8299;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130131899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0088;AVGPOST=0.9986;RSQ=0.9319;ERATE=0.0003;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130131944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8532;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130132001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0211;AVGPOST=0.9997;RSQ=0.9931;ERATE=0.0003;THETA=0.0025;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130132179 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130132202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130132278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130132352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5086;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130132394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9158;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130132415 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8174;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130132524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0041;AVGPOST=0.9972;RSQ=0.7685;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130132550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130132566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4116;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130132758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7765;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130132846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8262;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130132862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7862;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130132983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0052;AVGPOST=0.9955;RSQ=0.6358;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130133250 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7771;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130133285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9046;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130133306 . ATT A 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6110;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130133306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4928;AVGPOST=0.9930;RSQ=0.9906;ERATE=0.0005;THETA=0.0007;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 130133630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0221;AVGPOST=0.9986;RSQ=0.9768;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130133671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0096;AVGPOST=0.9960;RSQ=0.8524;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130134036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8304;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130134208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8690;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130134223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130134230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9328;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130134283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8925;ERATE=0.0003;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130134355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0002;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130134386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130134388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9807;ERATE=0.0003;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130134485 . AT A 324 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5081;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130134532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9265;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130134620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8141;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130134751 . AGTAAATAACCTTCACTG A 6619 PASS INDEL;BAVGPOST=0.989;BRSQ=0.750;LDAF=0.0248;AVGPOST=0.9914;RSQ=0.8740;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130134810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5127;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130134892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0075;AVGPOST=0.9976;RSQ=0.8545;ERATE=0.0005;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130134908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.973;LDAF=0.3121;AVGPOST=0.9913;RSQ=0.9879;ERATE=0.0007;THETA=0.0011;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 130134946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.910;LDAF=0.2910;AVGPOST=0.9579;RSQ=0.9378;ERATE=0.0044;THETA=0.0011;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 130135000 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0282;AVGPOST=0.9967;RSQ=0.9484;ERATE=0.0007;THETA=0.0008;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130135002 rs5778789 A ATTT 153 PASS INDEL;BAVGPOST=0.475;BRSQ=0.079;LDAF=0.2744;AVGPOST=0.7096;RSQ=0.4337;ERATE=0.0179;THETA=0.0011;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 130135005 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1464;AVGPOST=0.9976;RSQ=0.9919;ERATE=0.0005;THETA=0.0006;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130135264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5817;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130135269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130135277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5413;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130135539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6257;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130135586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9609;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130135773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.7826;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130136142 rs67148738 CTTAT C 5160 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0274;AVGPOST=0.9992;RSQ=0.9879;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130136227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9607;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130136256 . TAAGA T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7462;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130136355 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130136384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9845;ERATE=0.0002;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130136413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9304;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130136414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130136455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5191;ERATE=0.0002;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130136521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6343;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130136622 rs3831013 CCTA C 39011 PASS INDEL;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3155;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 130136769 rs3053969 AC A 2182 PASS INDEL;BAVGPOST=0.850;BRSQ=0.702;LDAF=0.2416;AVGPOST=0.8093;RSQ=0.6672;ERATE=0.0187;THETA=0.0005;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 130136775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8825;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130136911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.917;LDAF=0.0324;AVGPOST=0.9964;RSQ=0.9558;ERATE=0.0004;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130136981 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.858;LDAF=0.0183;AVGPOST=0.9971;RSQ=0.9451;ERATE=0.0004;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130137185 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130137188 . T TA 9652 PASS INDEL;BAVGPOST=0.983;BRSQ=0.937;LDAF=0.1416;AVGPOST=0.9761;RSQ=0.9288;ERATE=0.0045;THETA=0.0008;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 130137436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7895;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130137482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0581;AVGPOST=0.9985;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 130137583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9369;ERATE=0.0003;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130137728 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0068;AVGPOST=0.9974;RSQ=0.8489;ERATE=0.0007;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130137738 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0270;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0002;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130137844 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0271;AVGPOST=0.9996;RSQ=0.9931;ERATE=0.0003;THETA=0.0021;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130137889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5787;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130137915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5444;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130137972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130137973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6190;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130137975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130138055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130138084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.7092;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130138100 . C CT 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7119;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130138134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130138173 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130138221 . A AT 4682 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0273;AVGPOST=0.9990;RSQ=0.9845;ERATE=0.0005;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130138278 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0257;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0002;THETA=0.0009;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130138585 . T TG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5106;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130138674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.762;LDAF=0.0106;AVGPOST=0.9973;RSQ=0.8978;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130138692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0156;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0002;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130138786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130139101 . CT C 6602 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0407;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0003;THETA=0.0012;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130139134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9623;ERATE=0.0002;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130139154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6359;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130139186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0002;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130139309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3156;AVGPOST=0.9981;RSQ=0.9973;ERATE=0.0004;THETA=0.0008;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 130139363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7364;AVGPOST=0.9968;RSQ=0.9932;ERATE=0.0005;THETA=0.0005;AC=1610;AN=2184 GT:DS:GL:BD 0.73717946 1 1 130139863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1486;AVGPOST=0.9985;RSQ=0.9964;ERATE=0.0005;THETA=0.0005;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 130140064 . T TA 459 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7958;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130140175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6360;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130140255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0124;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130140297 . TAAA T 150 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130140303 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0071;AVGPOST=0.9986;RSQ=0.9146;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130140315 rs67161950 TTGAAC T 18379 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1176;AVGPOST=0.9976;RSQ=0.9901;ERATE=0.0007;THETA=0.0006;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130140316 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130140367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6661;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130140375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6318;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130140466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130140525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8582;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130140560 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8653;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130140605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.944;LDAF=0.0955;AVGPOST=0.9917;RSQ=0.9678;ERATE=0.0004;THETA=0.0008;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 130140769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0128;AVGPOST=0.9990;RSQ=0.9702;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130140784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0056;AVGPOST=0.9981;RSQ=0.8675;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130140820 . GACT G 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130140861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.791;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8765;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130141039 . C CTAGAAAG 1618 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9980;RSQ=0.9065;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130141161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7124;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130141489 rs35619535 CA C 77 PASS INDEL;BAVGPOST=0.998;BRSQ=0.440;LDAF=0.0052;AVGPOST=0.9950;RSQ=0.6211;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130141606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6713;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130141662 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130141710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6908;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130141765 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130141813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130141834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0002;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130141907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130141909 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130141958 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130141977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130142127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130142228 . T TTGG 1181 PASS INDEL;BAVGPOST=0.984;BRSQ=0.587;LDAF=0.0239;AVGPOST=0.9833;RSQ=0.7499;ERATE=0.0006;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130142418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6534;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130142475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0002;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130142527 . CGTAGTATAACAAT C 19547 PASS INDEL;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0624;AVGPOST=0.9948;RSQ=0.9743;ERATE=0.0004;THETA=0.0002;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 130142632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9791;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130142645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5266;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130142694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7757;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130142695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0087;AVGPOST=0.9996;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130142700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.5858;ERATE=0.0007;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130142778 rs74406083 CAG C 24295 PASS INDEL;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1646;AVGPOST=0.9878;RSQ=0.9685;ERATE=0.0016;THETA=0.0008;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 130142823 rs61039748 TAGAG T 30285 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1152;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0005;THETA=0.0009;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 130142833 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0131;AVGPOST=0.9979;RSQ=0.9460;ERATE=0.0003;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130142916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130142935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130142968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130143003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0165;AVGPOST=0.9996;RSQ=0.9899;ERATE=0.0002;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130143063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1180;AVGPOST=0.9984;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 130143120 . AT A 713 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8814;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130143186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130143196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130143292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9091;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130143307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9295;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130143364 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0002;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130143368 . CAG C 259 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8571;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130143375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8413;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130143421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130143528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0115;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130143551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7555;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130143635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130143907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130143925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130143986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130143987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9723;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130144004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0192;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130144153 . CATT C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144168 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130144210 . CTCT C 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5111;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130144223 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130144225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130144292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0002;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130144311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1480;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0002;THETA=0.0003;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 130144365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130144435 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144552 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130144602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.8309;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130144609 . AT A 227 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4892;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130144689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=0.9995;RSQ=0.9810;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130144778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8857;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130145272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0002;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130145364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4802;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130145381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130145400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130145427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0888;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 130145489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.482;LDAF=0.9865;AVGPOST=0.9876;RSQ=0.6043;ERATE=0.0022;THETA=0.0006;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 130145671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0354;AVGPOST=0.9983;RSQ=0.9818;ERATE=0.0004;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130145768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0012;AVGPOST=0.9980;RSQ=0.2636;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130145817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0034;AVGPOST=0.9952;RSQ=0.4369;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130145848 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7091;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130145874 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9710;ERATE=0.0004;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130145915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9150;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130146017 . G GAA 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7383;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130146076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.1039;AVGPOST=0.9878;RSQ=0.9469;ERATE=0.0004;THETA=0.0016;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 130146109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130146221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8508;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130146251 . GATT G 69 PASS INDEL;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7826;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130146269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6599;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130146375 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9966;RSQ=0.6723;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130146428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0892;AVGPOST=0.9982;RSQ=0.9907;ERATE=0.0004;THETA=0.0011;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 130146436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130146613 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9676;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130146632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6434;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130146747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8451;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130146767 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0078;AVGPOST=0.9901;RSQ=0.5342;ERATE=0.0014;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130147009 . CAAAT C 209 PASS INDEL;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0053;AVGPOST=0.9941;RSQ=0.5565;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130147018 rs71814180 G GAATA 108320 PASS INDEL;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.9441;AVGPOST=0.9931;RSQ=0.9572;ERATE=0.0007;THETA=0.0009;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 130147048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130147149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0081;AVGPOST=0.9988;RSQ=0.9455;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130147194 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4609;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130147195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8504;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130147213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.879;LDAF=0.2799;AVGPOST=0.9033;RSQ=0.8441;ERATE=0.0062;THETA=0.0006;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 130147581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.833;LDAF=0.8891;AVGPOST=0.9300;RSQ=0.7647;ERATE=0.0063;THETA=0.0006;AC=1991;AN=2184 GT:DS:GL:BD 0.91163003 1 1 130147614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7800;AVGPOST=0.9948;RSQ=0.9890;ERATE=0.0007;THETA=0.0007;AC=1702;AN=2184 GT:DS:GL:BD 0.77930403 1 1 130147648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9393;ERATE=0.0002;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130147859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130147978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5111;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130148165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7320;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130148192 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130148321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5149;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130148489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4844;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130148501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0077;AVGPOST=0.9976;RSQ=0.8762;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130148542 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.708;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.7825;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130148927 . C CT 58 PASS INDEL;BAVGPOST=0.988;BRSQ=0.505;LDAF=0.0332;AVGPOST=0.9522;RSQ=0.4146;ERATE=0.0097;THETA=0.0020;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130148936 . TG T 335 PASS INDEL;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9276;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130149078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9735;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130149117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6949;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130149138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0146;AVGPOST=0.9984;RSQ=0.9597;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130149177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7420;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130149237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130149268 . TAG T 124 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6559;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130149285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9538;ERATE=0.0002;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130149299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9384;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130149316 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6237;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130149442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130149549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130149624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130149759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130149819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4734;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130149826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6522;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130149856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130149895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7478;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130149924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130149935 . G GT 903 PASS INDEL;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.1477;AVGPOST=0.9337;RSQ=0.7991;ERATE=0.0004;THETA=0.0006;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 130150027 . T TG 10390 PASS INDEL;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0934;AVGPOST=0.9934;RSQ=0.9683;ERATE=0.0008;THETA=0.0004;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 130150029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7633;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130150244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9956;RSQ=0.8293;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130150265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.6628;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130150380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130150413 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0049;AVGPOST=0.9969;RSQ=0.7646;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130150440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130150477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9405;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130150563 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130150630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9716;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130150642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130150794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130150813 . C CGTCT 631 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8580;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130150865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130150869 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2628;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0008;THETA=0.0006;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 130150878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7756;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130151054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9100;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130151065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.862;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9461;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130151098 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130151118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9988;RSQ=0.9622;ERATE=0.0004;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130151214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130151243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.4882;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130151429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130151605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3153;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0008;THETA=0.0013;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 130151636 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0797;AVGPOST=0.9979;RSQ=0.9891;ERATE=0.0004;THETA=0.0004;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 130151683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130151903 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130152129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0100;AVGPOST=0.9974;RSQ=0.9078;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130152275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2656;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 130152335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2653;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 130152341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2664;AVGPOST=0.9968;RSQ=0.9938;ERATE=0.0007;THETA=0.0017;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 130152365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130152430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2652;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0003;THETA=0.0027;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 130152506 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130152516 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0163;AVGPOST=0.9991;RSQ=0.9761;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130152537 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0167;AVGPOST=0.9989;RSQ=0.9761;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130152768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130152772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130152931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7679;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130152956 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130152985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5360;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130153179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6315;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130153222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2819;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0008;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 130153223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130153283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9990;RSQ=0.9394;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130153342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130153350 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0109;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130153414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8344;ERATE=0.0004;THETA=0.0048;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130153642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0162;AVGPOST=0.9985;RSQ=0.9675;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130153671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5766;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130153711 . GAA G 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130153758 . GT G 1259 PASS INDEL;BAVGPOST=0.935;BRSQ=0.849;LDAF=0.2258;AVGPOST=0.9641;RSQ=0.9250;ERATE=0.0010;THETA=0.0016;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 130153761 . TTA T 16361 PASS INDEL;BAVGPOST=0.965;BRSQ=0.924;LDAF=0.2322;AVGPOST=0.9817;RSQ=0.9636;ERATE=0.0004;THETA=0.0004;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 130153764 rs57898518 TA T 16374 PASS INDEL;BAVGPOST=0.965;BRSQ=0.925;LDAF=0.2321;AVGPOST=0.9817;RSQ=0.9638;ERATE=0.0004;THETA=0.0037;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 130153765 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.905;LDAF=0.2617;AVGPOST=0.9682;RSQ=0.9463;ERATE=0.0008;THETA=0.0009;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 130153775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0145;AVGPOST=0.9965;RSQ=0.9139;ERATE=0.0010;THETA=0.0074;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130153788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9991;RSQ=0.9488;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130153990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0806;AVGPOST=0.9977;RSQ=0.9870;ERATE=0.0004;THETA=0.0010;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 130154048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9480;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130154088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130154106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0098;AVGPOST=0.9986;RSQ=0.9381;ERATE=0.0005;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130154135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8754;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130154154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130154232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0142;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130154300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6495;ERATE=0.0005;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130154303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1913;AVGPOST=0.9961;RSQ=0.9917;ERATE=0.0005;THETA=0.0015;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 130154471 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9578;ERATE=0.0003;THETA=0.0072;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130154498 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130154518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5088;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130154581 rs35452614 CAG C 25915 PASS INDEL;BAVGPOST=0.979;BRSQ=0.957;LDAF=0.2323;AVGPOST=0.9652;RSQ=0.9291;ERATE=0.0012;THETA=0.0009;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 130154633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.3087;AVGPOST=0.9956;RSQ=0.9929;ERATE=0.0005;THETA=0.0011;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 130154732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130154769 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2033;AVGPOST=0.9957;RSQ=0.9911;ERATE=0.0004;THETA=0.0009;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 130154933 . C CT 1084 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0096;AVGPOST=0.9973;RSQ=0.9039;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130155274 . T TA 885 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9549;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130155366 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9354;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130155485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5005;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130155493 . A AC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130155512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9309;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130155593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8158;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130155847 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.937;LDAF=0.6502;AVGPOST=0.9514;RSQ=0.9250;ERATE=0.0133;THETA=0.0005;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 130156262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0888;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130156362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9632;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130156376 . A AT 91 PASS INDEL;BAVGPOST=0.984;BRSQ=0.505;LDAF=0.0383;AVGPOST=0.9545;RSQ=0.5185;ERATE=0.0092;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130156406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.947;LDAF=0.1019;AVGPOST=0.9915;RSQ=0.9647;ERATE=0.0004;THETA=0.0004;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130156426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9990;RSQ=0.9658;ERATE=0.0002;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130156455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.969;LDAF=0.0457;AVGPOST=0.9978;RSQ=0.9796;ERATE=0.0004;THETA=0.0008;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 130156491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6405;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130156492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4337;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130156604 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0663;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 130156717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7056;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130156733 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130156939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130157017 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130157056 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8868;ERATE=0.0006;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130157168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0090;AVGPOST=0.9977;RSQ=0.8973;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130157342 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8783;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130157378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130157402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9533;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130157433 . A AT 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5604;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130157466 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6882;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130157509 . AT A 75 PASS INDEL;BAVGPOST=0.993;BRSQ=0.598;LDAF=0.0102;AVGPOST=0.9868;RSQ=0.5104;ERATE=0.0016;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130157546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130157547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8331;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130157644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0806;AVGPOST=0.9984;RSQ=0.9902;ERATE=0.0005;THETA=0.0007;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 130157830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0888;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130157878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8968;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130157963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0022;AVGPOST=0.9998;RSQ=0.9561;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130158125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130158165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130158187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0342;AVGPOST=0.9993;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130158227 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130158242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8690;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130158325 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130158473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0092;AVGPOST=0.9967;RSQ=0.8867;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130158566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0887;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0004;THETA=0.0006;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130158792 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1126;AVGPOST=0.9972;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 130158833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130159058 . TTTACTC T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7402;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130159096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0002;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130159241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130159251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0051;AVGPOST=0.9982;RSQ=0.8520;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130159268 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9170;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130159285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130159316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.7101;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130159364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8165;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130159583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9349;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130159897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6804;AVGPOST=0.9954;RSQ=0.9924;ERATE=0.0007;THETA=0.0030;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 130160102 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0048;AVGPOST=0.9972;RSQ=0.7879;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130160187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.4499;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130160234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.578;LDAF=0.0112;AVGPOST=0.9884;RSQ=0.6020;ERATE=0.0008;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130160244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.482;LDAF=0.0601;AVGPOST=0.9179;RSQ=0.4165;ERATE=0.0109;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130160551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.480;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.6812;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130160733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.482;LDAF=0.0041;AVGPOST=0.9956;RSQ=0.5685;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130161013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5714;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130161043 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0569;AVGPOST=0.9971;RSQ=0.9785;ERATE=0.0002;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130161167 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5678;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130161169 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0590;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 130161180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0595;AVGPOST=0.9952;RSQ=0.9612;ERATE=0.0008;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 130161320 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.0749;AVGPOST=0.9926;RSQ=0.9589;ERATE=0.0005;THETA=0.0005;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 130161394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0087;AVGPOST=0.9973;RSQ=0.8747;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130161480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130161564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7986;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130161584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9822;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130161587 . ATC A 178 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0139;AVGPOST=0.9964;RSQ=0.9063;ERATE=0.0002;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130161673 . TCTC T 3107 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0152;AVGPOST=0.9990;RSQ=0.9749;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130161674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5682;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130161722 . T TA 1072 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9456;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130161792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9161;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130161853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0058;AVGPOST=0.9986;RSQ=0.9067;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130162096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7107;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130162122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.905;LDAF=0.0216;AVGPOST=0.9975;RSQ=0.9538;ERATE=0.0002;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130162218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3138;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0006;THETA=0.0002;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 130162266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130162274 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130162309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130162339 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4828;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130162605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9368;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130162642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130162673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6320;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130162692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130162861 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0002;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130162917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.694;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7165;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130163116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0131;AVGPOST=0.9982;RSQ=0.9470;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130163194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0771;AVGPOST=0.9968;RSQ=0.9826;ERATE=0.0003;THETA=0.0001;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 130163217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130163236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0869;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0002;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 130163316 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0176;AVGPOST=0.9986;RSQ=0.9765;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130163325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6494;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130163386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0431;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130163393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7234;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130163552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130163596 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0002;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130163723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7658;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130163794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4868;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130163914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6087;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130164014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130164121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7496;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130164128 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8329;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130164206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3886;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 130164228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0127;AVGPOST=0.9981;RSQ=0.9487;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130164270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5346;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130164287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4972;AVGPOST=0.9962;RSQ=0.9936;ERATE=0.0008;THETA=0.0005;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 130164503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0052;AVGPOST=0.9952;RSQ=0.6742;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130164624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130164858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9850;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130164892 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8864;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130164898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130164986 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7718;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130165071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3884;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 130165114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3884;AVGPOST=0.9964;RSQ=0.9945;ERATE=0.0005;THETA=0.0004;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 130165139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.8901;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130165168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130165185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0425;AVGPOST=0.9984;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130165225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130165298 . ATTTCTTTACC A 1115 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0084;AVGPOST=0.9983;RSQ=0.9169;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130165306 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1381;AVGPOST=0.9973;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 130165393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0073;AVGPOST=0.9983;RSQ=0.8952;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130165406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.840;LDAF=0.9844;AVGPOST=0.9929;RSQ=0.8258;ERATE=0.0007;THETA=0.0004;AC=2153;AN=2184 GT:DS:GL:BD 0.98580587 1 1 130165510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130165745 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7238;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130165873 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9157;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130165942 . TGAAA T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7476;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130166205 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0465;AVGPOST=0.9989;RSQ=0.9912;ERATE=0.0003;THETA=0.0011;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 130166261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.7288;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130166377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130166440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8283;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130166478 . T TA 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130166482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130166553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130166558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5288;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130166644 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6827;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130166647 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0767;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 130166830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130166978 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7243;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130167006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9995;RSQ=0.0596;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130167128 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130167214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7274;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130167238 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130167385 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6435;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130167457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0206;AVGPOST=0.9993;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130167513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130167558 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8579;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130167607 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9780;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130167633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0100;AVGPOST=0.9989;RSQ=0.9680;ERATE=0.0002;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130167641 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7199;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130167743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1018;AVGPOST=0.9988;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130167857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130168123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1354;AVGPOST=0.9994;RSQ=0.9979;ERATE=0.0003;THETA=0.0007;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 130168196 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7029;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130168231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.857;LDAF=0.0084;AVGPOST=0.9975;RSQ=0.8825;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130168256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130168299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130168338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130168342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130168499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130168517 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130168703 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0352;AVGPOST=0.9990;RSQ=0.9872;ERATE=0.0003;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130169107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0705;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130169125 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9803;ERATE=0.0002;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130169230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130169238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6512;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130169313 . CA C 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5727;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130169395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8835;AVGPOST=0.9976;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=1930;AN=2184 GT:DS:GL:BD 0.88369966 1 1 130169492 . A AT 79 PASS INDEL;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0058;AVGPOST=0.9917;RSQ=0.3778;ERATE=0.0015;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130169637 . TAGC T 21 PASS INDEL;BAVGPOST=0.994;BRSQ=0.471;LDAF=0.0064;AVGPOST=0.9933;RSQ=0.5908;ERATE=0.0017;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130169645 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0559;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 130169686 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1027;AVGPOST=0.9966;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130169712 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0502;AVGPOST=0.9973;RSQ=0.9803;ERATE=0.0004;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 130169762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4847;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130169824 . CT C 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9241;ERATE=0.0002;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130170113 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130170120 . TTCA T 337 PASS INDEL;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.6118;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130170134 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0002;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130170161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130170461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9993;RSQ=0.9806;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130170570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130170571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2989;AVGPOST=0.9951;RSQ=0.9913;ERATE=0.0014;THETA=0.0005;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 130170715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5968;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130170826 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130170922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130171193 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2058;AVGPOST=0.9975;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 130171269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0083;AVGPOST=0.9981;RSQ=0.9153;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130171361 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0168;AVGPOST=0.9997;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130171498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8399;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130171548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.982;LDAF=0.2892;AVGPOST=0.9919;RSQ=0.9844;ERATE=0.0009;THETA=0.0029;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 130171596 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9707;ERATE=0.0004;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130171664 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7784;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130171773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130171911 . G GC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130171962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2953;AVGPOST=0.9977;RSQ=0.9953;ERATE=0.0006;THETA=0.0015;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 130171992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2874;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0005;THETA=0.0023;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 130172012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130172019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6114;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130172068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2651;AVGPOST=0.9980;RSQ=0.9960;ERATE=0.0004;THETA=0.0006;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 130172123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8971;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130172124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130172164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5237;AVGPOST=0.9956;RSQ=0.9934;ERATE=0.0012;THETA=0.0005;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 130172182 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2651;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 130172195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0298;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0007;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130172256 . A AT 103 PASS INDEL;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0040;AVGPOST=0.9971;RSQ=0.6919;ERATE=0.0024;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130172261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7127;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130172391 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7759;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130172393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130172410 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.7082;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130172590 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5097;AVGPOST=0.9963;RSQ=0.9942;ERATE=0.0009;THETA=0.0005;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 130172640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5011;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 130172703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130172902 . CTATT C 279 PASS INDEL;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0051;AVGPOST=0.9943;RSQ=0.5823;ERATE=0.0008;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130172941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130173073 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0295;AVGPOST=0.9979;RSQ=0.9677;ERATE=0.0005;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130173164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8409;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130173353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0076;AVGPOST=0.9977;RSQ=0.8909;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130173363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2190;AVGPOST=0.9978;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 130173391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173408 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130173468 . GCTT G 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5209;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0175;AVGPOST=0.9988;RSQ=0.9709;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130173609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130173613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8435;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130173627 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.893;LDAF=0.0166;AVGPOST=0.9921;RSQ=0.8445;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130173682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130173737 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5218;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=1139;AN=2184 GT:DS:GL:BD 0.52152014 1 1 130173817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7495;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130173903 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.885;LDAF=0.0420;AVGPOST=0.9898;RSQ=0.9073;ERATE=0.0006;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130174064 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130174145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0064;AVGPOST=0.9976;RSQ=0.8766;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130174175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2589;AVGPOST=0.9961;RSQ=0.9911;ERATE=0.0008;THETA=0.0010;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 130174243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0058;AVGPOST=0.9964;RSQ=0.7447;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130174292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8668;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130174296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130174298 . TA T 90 PASS INDEL;BAVGPOST=0.993;BRSQ=0.394;LDAF=0.0094;AVGPOST=0.9846;RSQ=0.3411;ERATE=0.0013;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130174335 rs34601654 A AT 1604 PASS INDEL;BAVGPOST=0.841;BRSQ=0.528;LDAF=0.2628;AVGPOST=0.7787;RSQ=0.5325;ERATE=0.0331;THETA=0.0005;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 130174338 rs59925709 TA T 10991 PASS INDEL;BAVGPOST=0.837;BRSQ=0.657;LDAF=0.3927;AVGPOST=0.7753;RSQ=0.5869;ERATE=0.0709;THETA=0.0003;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 130174339 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7223;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130174403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2128;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 130174441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9493;ERATE=0.0004;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130174449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130174509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6626;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130174569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130174579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130174591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9815;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130174654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130174661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6594;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130174675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130174682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130174987 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0064;AVGPOST=0.9957;RSQ=0.7418;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130175110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.894;LDAF=0.2145;AVGPOST=0.9716;RSQ=0.9313;ERATE=0.0030;THETA=0.0009;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 130175198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0076;AVGPOST=0.9964;RSQ=0.8081;ERATE=0.0006;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130175210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0108;AVGPOST=0.9901;RSQ=0.6290;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130175211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0066;AVGPOST=0.9959;RSQ=0.7698;ERATE=0.0008;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130175239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7284;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130175264 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5239;ERATE=0.0010;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130175279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130175294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.600;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3892;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130175314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6080;AVGPOST=0.9871;RSQ=0.9803;ERATE=0.0012;THETA=0.0004;AC=1328;AN=2184 GT:DS:GL:BD 0.60805863 1 1 130175405 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3493;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0006;THETA=0.0002;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 130175441 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3125;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 130175479 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6828;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130175501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.6042;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130175556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0059;AVGPOST=0.9949;RSQ=0.6313;ERATE=0.0010;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130175804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0160;AVGPOST=0.9967;RSQ=0.9158;ERATE=0.0006;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130175810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1125;AVGPOST=0.9962;RSQ=0.9866;ERATE=0.0003;THETA=0.0002;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 130175937 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4713;AVGPOST=0.9951;RSQ=0.9932;ERATE=0.0006;THETA=0.0008;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 130176057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130176205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0070;AVGPOST=0.9981;RSQ=0.9106;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130176253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7511;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130176263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0158;AVGPOST=0.9987;RSQ=0.9673;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130176427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5607;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130176532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8921;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130176596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8870;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130176597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0280;AVGPOST=0.9980;RSQ=0.9697;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130176654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130176663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1194;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 130176685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7324;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130176760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130176800 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9131;ERATE=0.0006;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130176851 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130176865 . T TG 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7591;ERATE=0.0003;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130177031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6985;ERATE=0.0014;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130177252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5850;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130177360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0510;AVGPOST=0.9986;RSQ=0.9880;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 130177412 . TGC T 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7526;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130177429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6998;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130177508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1060;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0003;THETA=0.0001;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 130177548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8876;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130177618 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130177658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5277;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130177787 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9353;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130177808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0229;AVGPOST=0.9919;RSQ=0.8623;ERATE=0.0009;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130177859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0058;AVGPOST=0.9986;RSQ=0.8958;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130177880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7149;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130177884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.976;LDAF=0.6529;AVGPOST=0.9798;RSQ=0.9664;ERATE=0.0021;THETA=0.0036;AC=1430;AN=2184 GT:DS:GL:BD 0.65476191 1 1 130177958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.959;LDAF=0.0396;AVGPOST=0.9984;RSQ=0.9835;ERATE=0.0003;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130177975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7580;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130178065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8128;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130178106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0134;AVGPOST=0.9994;RSQ=0.9841;ERATE=0.0003;THETA=0.0001;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130178115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7366;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130178249 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0152;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0015;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130178294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130178319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3114;AVGPOST=0.9953;RSQ=0.9913;ERATE=0.0010;THETA=0.0057;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 130178414 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0389;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130178424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1228;AVGPOST=0.9967;RSQ=0.9894;ERATE=0.0009;THETA=0.0002;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 130178660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130178684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130178708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5207;ERATE=0.0005;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130178730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0398;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130178747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1082;AVGPOST=0.9985;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 130178749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3414;AVGPOST=0.9925;RSQ=0.9878;ERATE=0.0009;THETA=0.0073;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 130178846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130178901 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0092;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130178960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.8438;ERATE=0.0012;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130178992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8739;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130179015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9508;ERATE=0.0003;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130179067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130179178 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2075;AVGPOST=0.9986;RSQ=0.9965;ERATE=0.0011;THETA=0.0006;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 130179224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130179288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130179309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0089;AVGPOST=0.9985;RSQ=0.9383;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130179335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6781;AVGPOST=0.9951;RSQ=0.9918;ERATE=0.0009;THETA=0.0003;AC=1479;AN=2184 GT:DS:GL:BD 0.67719781 1 1 130179429 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.5011;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130179777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9991;RSQ=0.9711;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130179935 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8515;AVGPOST=0.9963;RSQ=0.9884;ERATE=0.0008;THETA=0.0004;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 130179938 . GTTA G 1263 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130179996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0030;AVGPOST=0.9960;RSQ=0.5563;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130180058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7882;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130180063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0062;AVGPOST=0.9976;RSQ=0.8385;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130180076 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.801;LDAF=0.7704;AVGPOST=0.8785;RSQ=0.7379;ERATE=0.0353;THETA=0.0004;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 130180238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0117;AVGPOST=0.9992;RSQ=0.9673;ERATE=0.0003;THETA=0.0021;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130180340 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7625;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130180357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130180382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8284;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130180463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5853;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130180578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130180609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130180734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130180741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.827;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9330;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130180762 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.724;LDAF=0.0105;AVGPOST=0.9912;RSQ=0.6652;ERATE=0.0013;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130181614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130181630 rs71130621 C CT 26603 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3625;AVGPOST=0.9845;RSQ=0.9757;ERATE=0.0034;THETA=0.0002;AC=786;AN=2184 GT:DS:GL:BD 0.35989010 0 1 130181775 . T TA 108 PASS INDEL;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0074;AVGPOST=0.9936;RSQ=0.6503;ERATE=0.0015;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130181783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8926;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130181797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130181803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130181850 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3845;AVGPOST=0.9966;RSQ=0.9938;ERATE=0.0006;THETA=0.0005;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 130182004 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9012;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130182120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6826;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130182130 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8883;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130182227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0029;AVGPOST=0.9956;RSQ=0.4412;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130182268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.8155;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130182283 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6331;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130182375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8156;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130182440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.2895;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130182452 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0060;AVGPOST=0.9938;RSQ=0.6442;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130182470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6577;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130182502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4490;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130182528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5527;AVGPOST=0.9919;RSQ=0.9867;ERATE=0.0013;THETA=0.0007;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 130182625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5814;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130182667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.6421;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130182668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1918;AVGPOST=0.9950;RSQ=0.9869;ERATE=0.0005;THETA=0.0007;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 130182762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5111;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130182776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130182837 . CAA C 146 PASS INDEL;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0045;AVGPOST=0.9941;RSQ=0.5238;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130183043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0108;AVGPOST=0.9988;RSQ=0.9508;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130183098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7270;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130183099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0075;AVGPOST=0.9967;RSQ=0.8255;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130183235 . AC A 94 PASS INDEL;BAVGPOST=0.958;BRSQ=0.375;LDAF=0.0729;AVGPOST=0.8949;RSQ=0.3702;ERATE=0.0180;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130183235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8992;AVGPOST=0.9946;RSQ=0.9771;ERATE=0.0006;THETA=0.0005;AC=1964;AN=2184 GT:DS:GL:BD 0.89926738 1 1 130183278 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5000;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130183331 . C CT 2596 PASS INDEL;BAVGPOST=0.697;BRSQ=0.098;LDAF=0.8108;AVGPOST=0.7431;RSQ=0.3260;ERATE=0.0161;THETA=0.0004;AC=1935;AN=2184 GT:DS:GL:BD 0.88598901 1 1 130183382 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4130;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130183616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7289;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130183655 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0049;AVGPOST=0.9924;RSQ=0.4240;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130183670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.638;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.6014;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130183705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7734;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130183742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1666;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 130183783 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6955;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130183787 . C CA 344 PASS INDEL;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7021;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130183807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9838;AVGPOST=0.9995;RSQ=0.9863;ERATE=0.0003;THETA=0.0006;AC=2149;AN=2184 GT:DS:GL:BD 0.98397434 1 1 130183819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9754;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130183855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7926;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130183873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8928;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130183894 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130184107 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0057;AVGPOST=0.9980;RSQ=0.8576;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130184209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130184222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9204;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130184262 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6500;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130184321 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.777;LDAF=0.0089;AVGPOST=0.9974;RSQ=0.8694;ERATE=0.0006;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130184339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130184376 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130184430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.574;LDAF=0.0043;AVGPOST=0.9937;RSQ=0.4959;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130184436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.589;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8517;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130184494 . AC A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5327;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130184676 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9264;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130184795 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130184943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0074;AVGPOST=0.9962;RSQ=0.8099;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130185016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8460;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130185169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130185305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130185432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130185789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9897;ERATE=0.0003;THETA=0.0001;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130185836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130185919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130185942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7659;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130186015 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8550;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130186027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9175;ERATE=0.0013;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130186211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9687;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130186226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9115;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130186350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130186366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0398;AVGPOST=0.9994;RSQ=0.9930;ERATE=0.0003;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130186409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9499;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130186554 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9160;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130186720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5360;AVGPOST=0.9962;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 130186778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6258;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130186788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9996;RSQ=0.9757;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130186970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6950;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130187004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0349;AVGPOST=0.9988;RSQ=0.9879;ERATE=0.0003;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130187015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130187126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8590;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130187290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9432;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130187361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130187472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.5888;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130187566 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8780;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130187743 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8731;ERATE=0.0003;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130187780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130187942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9795;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130188036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9992;RSQ=0.9542;ERATE=0.0004;THETA=0.0034;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130188375 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6831;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130188413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.4839;AVGPOST=0.9886;RSQ=0.9839;ERATE=0.0006;THETA=0.0005;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 130188465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0125;AVGPOST=0.9986;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130188661 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2847;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130188718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.7748;ERATE=0.0016;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130188957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130189017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5857;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130189117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2072;AVGPOST=0.9945;RSQ=0.9889;ERATE=0.0006;THETA=0.0010;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 130189144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130189344 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0154;AVGPOST=0.9987;RSQ=0.9639;ERATE=0.0003;THETA=0.0074;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130189377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0945;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 130189400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130189826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9996;RSQ=0.9728;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130189837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130189879 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130189967 . TTG T 1002 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9517;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130190018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130190028 . G GT 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130190032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8887;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130190141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5003;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130190280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5706;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130190293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0407;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130190541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1400;AVGPOST=0.9990;RSQ=0.9967;ERATE=0.0006;THETA=0.0003;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 130190563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0416;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130190569 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2017;AVGPOST=0.9985;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 130190627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130190638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5654;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130190639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0100;AVGPOST=0.9994;RSQ=0.9784;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130190661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1413;AVGPOST=0.9994;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 130190664 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0408;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130190685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130190772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130190803 . ACTC A 1776 PASS INDEL;BAVGPOST=0.995;BRSQ=0.895;LDAF=0.0165;AVGPOST=0.9953;RSQ=0.8926;ERATE=0.0004;THETA=0.0021;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130190849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8681;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130190866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130190897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1501;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0004;THETA=0.0008;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 130190917 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130190939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9982;RSQ=0.9454;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130190963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0107;AVGPOST=0.9957;RSQ=0.8350;ERATE=0.0006;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130191076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9429;ERATE=0.0003;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130191091 . T TTA 26 PASS INDEL;BAVGPOST=0.999;BRSQ=0.519;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4416;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130191132 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0431;AVGPOST=0.9985;RSQ=0.9831;ERATE=0.0006;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130191139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0431;AVGPOST=0.9979;RSQ=0.9834;ERATE=0.0003;THETA=0.0010;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130191148 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1076;AVGPOST=0.9991;RSQ=0.9960;ERATE=0.0005;THETA=0.0014;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 130191195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130191280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130191293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9619;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130191319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1559;AVGPOST=0.9978;RSQ=0.9943;ERATE=0.0004;THETA=0.0016;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 130191330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1547;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0010;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 130191400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7867;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130191401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0143;AVGPOST=0.9979;RSQ=0.9452;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130191454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9192;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130191481 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1499;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0012;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 130191487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0060;AVGPOST=0.9982;RSQ=0.8698;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130191502 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0432;AVGPOST=0.9995;RSQ=0.9937;ERATE=0.0003;THETA=0.0010;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 130191571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9433;ERATE=0.0005;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130191574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130191661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130191688 rs76049159 AG A 13366 PASS INDEL;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1499;AVGPOST=0.9974;RSQ=0.9922;ERATE=0.0008;THETA=0.0006;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 130191758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130191810 . A ATG 9340 PASS INDEL;BAVGPOST=0.977;BRSQ=0.917;LDAF=0.1495;AVGPOST=0.9897;RSQ=0.9697;ERATE=0.0004;THETA=0.0006;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 130191857 . G GTGTA 2768 PASS INDEL;BAVGPOST=0.978;BRSQ=0.916;LDAF=0.1511;AVGPOST=0.9871;RSQ=0.9621;ERATE=0.0009;THETA=0.0010;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 130191863 . C CAT 437 PASS INDEL;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0102;AVGPOST=0.9920;RSQ=0.6877;ERATE=0.0012;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130191883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0136;AVGPOST=0.9918;RSQ=0.7585;ERATE=0.0011;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130191894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.891;LDAF=0.0246;AVGPOST=0.9877;RSQ=0.8089;ERATE=0.0008;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130191898 . T TAC 1538 PASS INDEL;BAVGPOST=0.981;BRSQ=0.810;LDAF=0.0621;AVGPOST=0.9622;RSQ=0.7332;ERATE=0.0048;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 130191899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.915;LDAF=0.0194;AVGPOST=0.9961;RSQ=0.9236;ERATE=0.0004;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130191900 . C CAT 457 PASS INDEL;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0073;AVGPOST=0.9943;RSQ=0.6947;ERATE=0.0012;THETA=0.0043;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130191924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7441;ERATE=0.0005;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130192080 . CAT C 15493 PASS INDEL;BAVGPOST=0.983;BRSQ=0.111;LDAF=0.9850;AVGPOST=0.9841;RSQ=0.5444;ERATE=0.0014;THETA=0.0013;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 130192149 . C CAT 9959 PASS INDEL;BAVGPOST=0.982;BRSQ=0.932;LDAF=0.1521;AVGPOST=0.9844;RSQ=0.9565;ERATE=0.0026;THETA=0.0015;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 130192221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.1479;AVGPOST=0.9946;RSQ=0.9853;ERATE=0.0005;THETA=0.0012;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 130192250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9081;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130192281 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130192339 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1787;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0004;THETA=0.0016;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130192470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130192534 rs57836322 C CA 19538 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1500;AVGPOST=0.9966;RSQ=0.9905;ERATE=0.0005;THETA=0.0021;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 130192579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130192591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130192660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130192714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8679;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130192862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0059;AVGPOST=0.9980;RSQ=0.8734;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130192892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130192945 . TA T 686 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130192961 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130192972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7774;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130193033 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130193043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0068;AVGPOST=0.9984;RSQ=0.8998;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130193056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9996;RSQ=0.9677;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130193087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8482;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130193088 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130193117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9257;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130193163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1783;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0003;THETA=0.0050;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130193189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.4882;ERATE=0.0017;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130193224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130193384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9738;ERATE=0.0003;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130193408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0195;AVGPOST=0.9968;RSQ=0.9410;ERATE=0.0003;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130193409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130193432 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.8164;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130193434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130193455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130193487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0004;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130193617 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9800;ERATE=0.0004;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130193753 . GA G 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8113;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130193775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130193856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130194146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130194148 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130194163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7206;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130194380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1627;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0005;THETA=0.0021;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 130194427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4217;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130194461 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9859;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130194479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130194507 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0191;AVGPOST=0.9993;RSQ=0.9881;ERATE=0.0003;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130194539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0058;AVGPOST=0.9971;RSQ=0.8394;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130194635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0484;AVGPOST=0.9983;RSQ=0.9867;ERATE=0.0004;THETA=0.0010;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130194640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130194695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8024;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130194701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1736;AVGPOST=0.9968;RSQ=0.9918;ERATE=0.0005;THETA=0.0011;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 130194940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5544;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130195023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0060;AVGPOST=0.9985;RSQ=0.8863;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130195027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8303;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130195047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5520;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130195072 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7287;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130195095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0026;AVGPOST=0.9971;RSQ=0.5256;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130195167 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.0076;AVGPOST=0.9966;RSQ=0.8027;ERATE=0.0007;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130195297 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9401;ERATE=0.0003;THETA=0.0028;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130195386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1033;AVGPOST=0.9981;RSQ=0.9921;ERATE=0.0005;THETA=0.0015;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 130195447 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130195466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130195509 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9608;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130195576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130195592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130195680 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7326;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130195766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0290;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130195792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130195799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9995;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130195811 . T TG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4891;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130195846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.2534;AVGPOST=0.9861;RSQ=0.9731;ERATE=0.0009;THETA=0.0005;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 130195855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1177;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 130195950 rs72366725 TAC T 6835 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0737;AVGPOST=0.9979;RSQ=0.9875;ERATE=0.0005;THETA=0.0006;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 130195980 rs4648252 GA G 776 PASS INDEL;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0094;AVGPOST=0.9980;RSQ=0.9311;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130196102 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130196103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9863;ERATE=0.0002;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130196136 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0776;AVGPOST=0.9992;RSQ=0.9959;ERATE=0.0004;THETA=0.0006;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130196187 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8230;ERATE=0.0008;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130196248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.924;LDAF=0.0282;AVGPOST=0.9963;RSQ=0.9456;ERATE=0.0004;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130196400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0728;AVGPOST=0.9970;RSQ=0.9849;ERATE=0.0003;THETA=0.0005;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 130196715 rs113450246 CA C 5674 PASS INDEL;BAVGPOST=0.984;BRSQ=0.912;LDAF=0.0980;AVGPOST=0.9537;RSQ=0.8124;ERATE=0.0074;THETA=0.0008;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 130196724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0145;AVGPOST=0.9994;RSQ=0.9802;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130196827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8594;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130196944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.964;LDAF=0.1948;AVGPOST=0.9815;RSQ=0.9550;ERATE=0.0005;THETA=0.0007;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 130196980 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0002;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130197036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9418;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130197096 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.8969;AVGPOST=0.9918;RSQ=0.9660;ERATE=0.0005;THETA=0.0006;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 130197106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0584;AVGPOST=0.9993;RSQ=0.9951;ERATE=0.0003;THETA=0.0010;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 130197279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8760;ERATE=0.0002;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130197417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7810;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130197486 rs34984585 TC T 1719 PASS INDEL;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0934;AVGPOST=0.9936;RSQ=0.9759;ERATE=0.0003;THETA=0.0005;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 130197496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0935;AVGPOST=0.9939;RSQ=0.9766;ERATE=0.0003;THETA=0.0002;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 130197498 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1085;AVGPOST=0.9939;RSQ=0.9796;ERATE=0.0003;THETA=0.0005;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 130197499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7495;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130197562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130197706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8175;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130197824 . A AT 484 PASS INDEL;BAVGPOST=0.989;BRSQ=0.558;LDAF=0.0223;AVGPOST=0.9713;RSQ=0.4929;ERATE=0.0062;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130197926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130198022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0636;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0002;THETA=0.0002;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 130198046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1884;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0003;THETA=0.0010;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 130198056 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1026;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130198137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6448;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5760;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130198287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5972;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130198359 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130198431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4393;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130198532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6712;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130198551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9172;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1174;AVGPOST=0.9986;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130198634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0403;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0012;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130198643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.1174;AVGPOST=0.9986;RSQ=0.9943;ERATE=0.0003;THETA=0.0007;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130198654 . C CT 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8604;ERATE=0.0005;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130198726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130198733 . C CA 54 PASS INDEL;BAVGPOST=0.997;BRSQ=0.765;LDAF=0.0108;AVGPOST=0.9894;RSQ=0.6098;ERATE=0.0008;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130198734 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2406;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 130198869 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1895;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 130198891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6407;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198921 rs34290361 TA T 13920 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1031;AVGPOST=0.9985;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130198954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7709;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130198956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8949;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130198968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130199001 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9716;ERATE=0.0002;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130199029 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9666;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130199053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5294;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130199063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1751;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 130199180 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6567;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130199220 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8183;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130199248 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7872;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130199252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130199292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9988;RSQ=0.9628;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130199321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0139;AVGPOST=0.9984;RSQ=0.9454;ERATE=0.0004;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130199435 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1754;AVGPOST=0.9985;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 130199464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1753;AVGPOST=0.9974;RSQ=0.9928;ERATE=0.0006;THETA=0.0007;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 130199485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0580;AVGPOST=0.9988;RSQ=0.9924;ERATE=0.0005;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 130199514 . T TA 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7458;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130199648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2389;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0003;THETA=0.0008;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 130199737 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5326;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130199828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0053;AVGPOST=0.9967;RSQ=0.7552;ERATE=0.0002;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130199892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.472;LDAF=0.0172;AVGPOST=0.9798;RSQ=0.5688;ERATE=0.0037;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130199934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.0661;AVGPOST=0.9964;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 130199954 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1035;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 130200149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6522;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4738;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130200307 . C CAATT 27781 PASS INDEL;BAVGPOST=0.981;BRSQ=0.945;LDAF=0.1678;AVGPOST=0.9882;RSQ=0.9683;ERATE=0.0016;THETA=0.0004;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 130200347 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.984;LDAF=0.2361;AVGPOST=0.9970;RSQ=0.9941;ERATE=0.0006;THETA=0.0011;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 130200358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0564;AVGPOST=0.9994;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130200415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130200455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130200517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8069;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130200541 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9444;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130200613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130200619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130200670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7340;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 130200762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7336;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0004;THETA=0.0055;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 130200774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7340;AVGPOST=0.9967;RSQ=0.9942;ERATE=0.0004;THETA=0.0122;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 130200909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.7411;AVGPOST=0.9937;RSQ=0.9894;ERATE=0.0005;THETA=0.0008;AC=1619;AN=2184 GT:DS:GL:BD 0.74130034 1 1 130200945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.7231;AVGPOST=0.9931;RSQ=0.9883;ERATE=0.0005;THETA=0.0004;AC=1581;AN=2184 GT:DS:GL:BD 0.72390109 1 1 130200957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7402;AVGPOST=0.9926;RSQ=0.9874;ERATE=0.0005;THETA=0.0088;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 130200977 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.7399;AVGPOST=0.9886;RSQ=0.9810;ERATE=0.0005;THETA=0.0011;AC=1619;AN=2184 GT:DS:GL:BD 0.74130034 1 1 130201010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.7395;AVGPOST=0.9887;RSQ=0.9810;ERATE=0.0005;THETA=0.0122;AC=1617;AN=2184 GT:DS:GL:BD 0.74038464 1 1 130201014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6206;ERATE=0.0004;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130201067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0141;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130201167 . T TC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130201214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4217;AVGPOST=0.9884;RSQ=0.9856;ERATE=0.0011;THETA=0.0248;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 130201257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4216;AVGPOST=0.9881;RSQ=0.9856;ERATE=0.0010;THETA=0.0015;AC=922;AN=2184 GT:DS:GL:BD 0.42216116 0 1 130201403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9619;ERATE=0.0003;THETA=0.0129;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130201406 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4179;AVGPOST=0.9932;RSQ=0.9913;ERATE=0.0006;THETA=0.0014;AC=914;AN=2184 GT:DS:GL:BD 0.41849816 0 1 130201517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4442;AVGPOST=0.9930;RSQ=0.9909;ERATE=0.0003;THETA=0.0019;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 130201532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130201572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130201577 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6027;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130201587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9638;ERATE=0.0003;THETA=0.0024;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130201600 . G GA 854 PASS INDEL;BAVGPOST=0.991;BRSQ=0.752;LDAF=0.0243;AVGPOST=0.9795;RSQ=0.6694;ERATE=0.0053;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130201622 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130201632 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1311;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 130201665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9761;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130201787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8047;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130201790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0298;AVGPOST=0.9987;RSQ=0.9807;ERATE=0.0003;THETA=0.0032;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130202018 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1444;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0019;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130202051 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1443;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130202077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7306;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130202142 . AAAG A 440 PASS INDEL;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0043;AVGPOST=0.9967;RSQ=0.7269;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130202174 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9206;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130202191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1447;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0004;THETA=0.0013;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130202294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130202305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130202345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9351;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130202407 MERGED_DEL_2_6578 AGAGCCCAGCACTGTGTATTCTGGAAAGTGAAAATAGGGCCTCAGTTGCTACCAGAAATGCCTGAAACTCCAAGGAGGATGAGTAGTATCATGATAAGGTCTGGATAATGAATTTAATATGTATATAGATATATGTAACATTCATTTATATTTGAGTATCTATGATGCAAAAAATTATTAGAGTTTTTTT A . . SV;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.2269;AVGPOST=0.9951;RSQ=0.9905;ERATE=0.0004;THETA=0.0027;CIEND=-178;192;CIPOS=-156;215;END=187722532;HOMLEN=2;HOMSEQ=GA;SOURCE=CNVnator_187716101_18772285 GT:DS:GL:BD 0.22619048 0 1 130202442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.7583;ERATE=0.0010;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130202465 . TG T 66 PASS INDEL;BAVGPOST=0.983;BRSQ=0.535;LDAF=0.0201;AVGPOST=0.9745;RSQ=0.5366;ERATE=0.0026;THETA=0.0070;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130202504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.892;LDAF=0.2206;AVGPOST=0.9612;RSQ=0.9255;ERATE=0.0005;THETA=0.0003;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 130202505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1941;AVGPOST=0.9748;RSQ=0.9519;ERATE=0.0003;THETA=0.0005;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130202529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.796;LDAF=0.0069;AVGPOST=0.9975;RSQ=0.8529;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130202567 . AT A 818 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9300;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130202615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.633;LDAF=0.0050;AVGPOST=0.9950;RSQ=0.5814;ERATE=0.0009;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130202655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6297;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130202680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6118;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130202722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1943;AVGPOST=0.9745;RSQ=0.9508;ERATE=0.0003;THETA=0.0003;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130202850 . ACT A 15426 PASS INDEL;BAVGPOST=0.966;BRSQ=0.908;LDAF=0.1951;AVGPOST=0.9723;RSQ=0.9467;ERATE=0.0007;THETA=0.0010;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130202880 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.908;LDAF=0.1928;AVGPOST=0.9741;RSQ=0.9513;ERATE=0.0004;THETA=0.0017;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 130202893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9246;ERATE=0.0003;THETA=0.0027;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130202934 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.839;LDAF=0.0081;AVGPOST=0.9948;RSQ=0.7365;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130203003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1935;AVGPOST=0.9750;RSQ=0.9521;ERATE=0.0004;THETA=0.0007;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130203013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4843;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130203037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130203063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8949;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130203077 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130203117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6150;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130203158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130203159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1931;AVGPOST=0.9764;RSQ=0.9558;ERATE=0.0003;THETA=0.0006;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130203214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.918;LDAF=0.1933;AVGPOST=0.9734;RSQ=0.9502;ERATE=0.0004;THETA=0.0011;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 130203272 . G GTCTATT 8744 PASS INDEL;BAVGPOST=0.948;BRSQ=0.864;LDAF=0.1848;AVGPOST=0.9658;RSQ=0.9344;ERATE=0.0004;THETA=0.0007;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 130203482 . T TATTTCTCC 36365 PASS INDEL;BAVGPOST=0.950;BRSQ=0.869;LDAF=0.1870;AVGPOST=0.9637;RSQ=0.9315;ERATE=0.0005;THETA=0.0004;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130203485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.914;LDAF=0.1911;AVGPOST=0.9751;RSQ=0.9535;ERATE=0.0004;THETA=0.0016;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 130203509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8163;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130203543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8252;ERATE=0.0003;THETA=0.0028;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130203588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0065;AVGPOST=0.9950;RSQ=0.6860;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130203619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9124;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130203620 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4575;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130203760 . TAAGA T 12601 PASS INDEL;BAVGPOST=0.952;BRSQ=0.876;LDAF=0.1893;AVGPOST=0.9705;RSQ=0.9454;ERATE=0.0004;THETA=0.0002;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 130203844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1940;AVGPOST=0.9744;RSQ=0.9528;ERATE=0.0006;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 130203892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.896;LDAF=0.1987;AVGPOST=0.9672;RSQ=0.9390;ERATE=0.0013;THETA=0.0003;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 130204002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.317;LDAF=0.0112;AVGPOST=0.9851;RSQ=0.4853;ERATE=0.0010;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130204024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0035;AVGPOST=0.9961;RSQ=0.5296;ERATE=0.0005;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130204119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6267;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130204120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1933;AVGPOST=0.9772;RSQ=0.9561;ERATE=0.0003;THETA=0.0006;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 130204374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1928;AVGPOST=0.9762;RSQ=0.9541;ERATE=0.0005;THETA=0.0004;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 130204393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.3604;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130204411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8754;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130204461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6434;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130204499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.9100;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130204501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.921;LDAF=0.1917;AVGPOST=0.9757;RSQ=0.9522;ERATE=0.0005;THETA=0.0007;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130204545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.921;LDAF=0.1915;AVGPOST=0.9761;RSQ=0.9537;ERATE=0.0003;THETA=0.0009;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130204547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.589;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6976;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130204559 rs59369970 GT G 17105 PASS INDEL;BAVGPOST=0.992;BRSQ=0.966;LDAF=0.0965;AVGPOST=0.9889;RSQ=0.9612;ERATE=0.0006;THETA=0.0006;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 130204631 . TC T 2037 PASS INDEL;BAVGPOST=0.970;BRSQ=0.875;LDAF=0.1496;AVGPOST=0.8795;RSQ=0.6742;ERATE=0.0093;THETA=0.0016;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 130204633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.443;LDAF=0.0012;AVGPOST=0.9980;RSQ=0.3467;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130204669 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4037;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130204670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8215;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130204683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.493;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3530;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130204789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4445;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130204799 . TATC T 21689 PASS INDEL;BAVGPOST=0.991;BRSQ=0.964;LDAF=0.0969;AVGPOST=0.9890;RSQ=0.9613;ERATE=0.0005;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 130204818 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.930;LDAF=0.5594;AVGPOST=0.9601;RSQ=0.9482;ERATE=0.0004;THETA=0.0005;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 130204834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0044;AVGPOST=0.9983;RSQ=0.8187;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130204838 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1937;AVGPOST=0.9757;RSQ=0.9533;ERATE=0.0006;THETA=0.0009;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130204893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130204902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.894;LDAF=0.1918;AVGPOST=0.9677;RSQ=0.9330;ERATE=0.0005;THETA=0.0005;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 130204967 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.6244;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130205109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1939;AVGPOST=0.9761;RSQ=0.9539;ERATE=0.0003;THETA=0.0002;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130205141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1935;AVGPOST=0.9764;RSQ=0.9542;ERATE=0.0003;THETA=0.0006;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130205162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0042;AVGPOST=0.9957;RSQ=0.5512;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130205168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.876;LDAF=0.7690;AVGPOST=0.9609;RSQ=0.9323;ERATE=0.0004;THETA=0.0001;AC=1686;AN=2184 GT:DS:GL:BD 0.77197802 1 1 130205214 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8507;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130205271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7432;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130205289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9988;RSQ=0.2663;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130205310 . CA C 339 PASS INDEL;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0065;AVGPOST=0.9973;RSQ=0.8190;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130205372 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1934;AVGPOST=0.9761;RSQ=0.9545;ERATE=0.0006;THETA=0.0005;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 130205380 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9258;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130205381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.920;LDAF=0.1934;AVGPOST=0.9752;RSQ=0.9533;ERATE=0.0006;THETA=0.0005;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 130205531 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9985;RSQ=0.2591;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130205545 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.945;LDAF=0.0955;AVGPOST=0.9901;RSQ=0.9634;ERATE=0.0005;THETA=0.0001;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 130205548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3573;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130205554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0049;AVGPOST=0.9946;RSQ=0.5511;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130205586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.896;LDAF=0.1948;AVGPOST=0.9724;RSQ=0.9482;ERATE=0.0006;THETA=0.0007;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 130205591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.897;LDAF=0.1940;AVGPOST=0.9742;RSQ=0.9512;ERATE=0.0006;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 130205615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.875;LDAF=0.7493;AVGPOST=0.9297;RSQ=0.8844;ERATE=0.0056;THETA=0.0004;AC=1666;AN=2184 GT:DS:GL:BD 0.76282054 1 1 130205644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0149;AVGPOST=0.9975;RSQ=0.9411;ERATE=0.0004;THETA=0.0019;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130205767 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8255;ERATE=0.0004;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130205828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9855;ERATE=0.0003;THETA=0.0036;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130205929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0262;AVGPOST=0.9993;RSQ=0.9891;ERATE=0.0004;THETA=0.0059;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130205930 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.1976;AVGPOST=0.9951;RSQ=0.9906;ERATE=0.0005;THETA=0.0005;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 130205974 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0097;AVGPOST=0.9992;RSQ=0.9643;ERATE=0.0003;THETA=0.0021;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130205987 . A AT 144 PASS INDEL;BAVGPOST=0.975;BRSQ=0.490;LDAF=0.0364;AVGPOST=0.9633;RSQ=0.5548;ERATE=0.0079;THETA=0.0009;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 130206145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7934;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130206312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130206445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130206491 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130206538 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.884;LDAF=0.0211;AVGPOST=0.9933;RSQ=0.8802;ERATE=0.0011;THETA=0.0034;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130206666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7463;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130206668 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130206826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130206847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8302;ERATE=0.0005;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130206926 rs34017606 A AT 1656 PASS INDEL;BAVGPOST=0.975;BRSQ=0.765;LDAF=0.0642;AVGPOST=0.9629;RSQ=0.7487;ERATE=0.0080;THETA=0.0020;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 130206970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6022;ERATE=0.0007;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130206980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130207029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9809;ERATE=0.0004;THETA=0.0024;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130207066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0078;AVGPOST=0.9987;RSQ=0.9350;ERATE=0.0006;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130207086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0316;AVGPOST=0.9990;RSQ=0.9868;ERATE=0.0004;THETA=0.0025;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130207229 . TTTTC T 664 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0065;AVGPOST=0.9968;RSQ=0.7771;ERATE=0.0007;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130207269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.510;LDAF=0.0055;AVGPOST=0.9947;RSQ=0.5659;ERATE=0.0007;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130207340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9515;ERATE=0.0004;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130207373 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.1861;AVGPOST=0.9950;RSQ=0.9892;ERATE=0.0005;THETA=0.0013;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 130207380 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5507;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130207417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0202;AVGPOST=0.9979;RSQ=0.9645;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130207481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.643;LDAF=0.0041;AVGPOST=0.9967;RSQ=0.7265;ERATE=0.0004;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130207501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5909;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130207517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1349;AVGPOST=0.9940;RSQ=0.9836;ERATE=0.0005;THETA=0.0015;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 130207533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0316;AVGPOST=0.9974;RSQ=0.9709;ERATE=0.0007;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130207536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.486;LDAF=0.0024;AVGPOST=0.9960;RSQ=0.2901;ERATE=0.0007;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130207562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0126;AVGPOST=0.9967;RSQ=0.8861;ERATE=0.0006;THETA=0.0023;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130207609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9847;ERATE=0.0003;THETA=0.0014;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130207677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7915;ERATE=0.0004;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130207806 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7221;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130207865 . G GC 190 PASS INDEL;BAVGPOST=0.954;BRSQ=0.597;LDAF=0.0452;AVGPOST=0.9601;RSQ=0.7135;ERATE=0.0005;THETA=0.0012;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130207880 . C CA 10280 PASS INDEL;BAVGPOST=0.899;BRSQ=0.718;LDAF=0.2387;AVGPOST=0.8313;RSQ=0.6558;ERATE=0.0322;THETA=0.0038;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 130207882 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0004;THETA=0.0089;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130207909 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130207961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0401;AVGPOST=0.9975;RSQ=0.9767;ERATE=0.0006;THETA=0.0039;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130208137 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4837;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130208189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5508;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130208318 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.4773;ERATE=0.0010;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130208341 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0283;AVGPOST=0.9983;RSQ=0.9776;ERATE=0.0004;THETA=0.0016;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130208380 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0388;AVGPOST=0.9970;RSQ=0.9683;ERATE=0.0003;THETA=0.0018;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130208409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5443;ERATE=0.0004;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130208461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.791;LDAF=0.0052;AVGPOST=0.9978;RSQ=0.8182;ERATE=0.0007;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130208500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.1883;AVGPOST=0.9927;RSQ=0.9857;ERATE=0.0006;THETA=0.0041;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 130208520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0189;AVGPOST=0.9930;RSQ=0.8530;ERATE=0.0016;THETA=0.0012;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130208595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0553;AVGPOST=0.9956;RSQ=0.9708;ERATE=0.0005;THETA=0.0066;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 130208611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0118;AVGPOST=0.9980;RSQ=0.9264;ERATE=0.0004;THETA=0.0025;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130208714 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6172;ERATE=0.0009;THETA=0.0077;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130208785 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6053;ERATE=0.0007;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130208805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1096;AVGPOST=0.9918;RSQ=0.9744;ERATE=0.0012;THETA=0.0012;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 130208875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6612;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130208890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0501;AVGPOST=0.9968;RSQ=0.9732;ERATE=0.0003;THETA=0.0044;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130208932 . GA G 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8733;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130208937 . G GCTTTT 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.5141;ERATE=0.0008;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130209179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8610;ERATE=0.0003;THETA=0.0172;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130209352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1231;AVGPOST=0.9979;RSQ=0.9938;ERATE=0.0004;THETA=0.0047;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 130209438 . AAT A 578 PASS INDEL;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0182;AVGPOST=0.9972;RSQ=0.9333;ERATE=0.0006;THETA=0.0021;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130209528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0418;AVGPOST=0.9975;RSQ=0.9752;ERATE=0.0005;THETA=0.0023;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130209560 . TTG T 28 PASS INDEL;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0035;AVGPOST=0.9966;RSQ=0.5876;ERATE=0.0013;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130209623 . G GAATAAATA 17561 PASS INDEL;BAVGPOST=0.983;BRSQ=0.920;LDAF=0.0880;AVGPOST=0.9903;RSQ=0.9625;ERATE=0.0010;THETA=0.0038;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 130209659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.963;LDAF=0.0833;AVGPOST=0.9937;RSQ=0.9756;ERATE=0.0007;THETA=0.0026;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 130209660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.486;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.6676;ERATE=0.0007;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130209698 . C CA 265 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0053;AVGPOST=0.9966;RSQ=0.6986;ERATE=0.0021;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130209699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0003;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130209790 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.777;LDAF=0.0104;AVGPOST=0.9964;RSQ=0.8778;ERATE=0.0004;THETA=0.0033;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130209796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.936;LDAF=0.0567;AVGPOST=0.9936;RSQ=0.9619;ERATE=0.0008;THETA=0.0013;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130209956 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130209992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7378;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130210002 . CTAA C 1924 PASS INDEL;BAVGPOST=0.982;BRSQ=0.540;LDAF=0.0186;AVGPOST=0.9825;RSQ=0.5873;ERATE=0.0007;THETA=0.0050;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130210013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0056;AVGPOST=0.9977;RSQ=0.8163;ERATE=0.0006;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130210027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5140;ERATE=0.0007;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130210037 . A ATT 133 PASS INDEL;BAVGPOST=0.992;BRSQ=0.667;LDAF=0.0106;AVGPOST=0.9927;RSQ=0.7330;ERATE=0.0011;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130210082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8687;ERATE=0.0007;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130210120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130210187 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9172;ERATE=0.0009;THETA=0.0043;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130210211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8728;ERATE=0.0004;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130210244 . GGA G 73 PASS INDEL;BAVGPOST=0.995;BRSQ=0.704;LDAF=0.0095;AVGPOST=0.9924;RSQ=0.6659;ERATE=0.0022;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130210293 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0113;AVGPOST=0.9992;RSQ=0.9740;ERATE=0.0003;THETA=0.0022;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130210424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0104;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0020;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130210484 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0199;AVGPOST=0.9982;RSQ=0.9696;ERATE=0.0003;THETA=0.0074;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130210609 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7468;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130210688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1088;AVGPOST=0.9977;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 130210729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130210756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1600;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0005;THETA=0.0008;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 130210783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1587;AVGPOST=0.9987;RSQ=0.9961;ERATE=0.0006;THETA=0.0006;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 130210945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4413;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130211005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6856;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130211046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130211105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130211342 . GA G 376 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7836;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130211361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1575;AVGPOST=0.9935;RSQ=0.9831;ERATE=0.0008;THETA=0.0008;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 130211375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1567;AVGPOST=0.9957;RSQ=0.9895;ERATE=0.0003;THETA=0.0006;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 130211385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1576;AVGPOST=0.9957;RSQ=0.9889;ERATE=0.0006;THETA=0.0007;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 130211389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0347;AVGPOST=0.9977;RSQ=0.9713;ERATE=0.0005;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130211431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1584;AVGPOST=0.9977;RSQ=0.9943;ERATE=0.0003;THETA=0.0007;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 130211437 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0129;AVGPOST=0.9980;RSQ=0.9356;ERATE=0.0004;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130211445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9573;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130211449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130211466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4843;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130211529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5780;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130211536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.862;LDAF=0.1538;AVGPOST=0.9855;RSQ=0.9587;ERATE=0.0012;THETA=0.0006;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 130211566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.362;LDAF=0.0064;AVGPOST=0.9890;RSQ=0.2752;ERATE=0.0018;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130211569 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0074;AVGPOST=0.9935;RSQ=0.6013;ERATE=0.0009;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130211677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.809;LDAF=0.1190;AVGPOST=0.9442;RSQ=0.7873;ERATE=0.0032;THETA=0.0006;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 130211767 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.865;LDAF=0.1948;AVGPOST=0.9621;RSQ=0.9047;ERATE=0.0021;THETA=0.0009;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130211776 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.931;LDAF=0.1560;AVGPOST=0.9624;RSQ=0.9033;ERATE=0.0037;THETA=0.0013;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 130211910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1779;AVGPOST=0.9965;RSQ=0.9894;ERATE=0.0004;THETA=0.0016;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 130212005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5064;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130212007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8340;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130212017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1594;AVGPOST=0.9961;RSQ=0.9890;ERATE=0.0005;THETA=0.0003;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130212046 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3368;AVGPOST=0.9950;RSQ=0.9903;ERATE=0.0006;THETA=0.0017;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 130212048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0100;AVGPOST=0.9982;RSQ=0.9172;ERATE=0.0005;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130212084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1590;AVGPOST=0.9970;RSQ=0.9910;ERATE=0.0006;THETA=0.0007;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130212112 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4178;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130212270 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9976;RSQ=0.9129;ERATE=0.0004;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130212450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4675;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130212475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1596;AVGPOST=0.9979;RSQ=0.9940;ERATE=0.0004;THETA=0.0005;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130212476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1590;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130212488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.828;LDAF=0.0204;AVGPOST=0.9914;RSQ=0.8109;ERATE=0.0009;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130212495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0071;AVGPOST=0.9970;RSQ=0.8380;ERATE=0.0005;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130212509 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8850;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130212510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0596;AVGPOST=0.9985;RSQ=0.9887;ERATE=0.0004;THETA=0.0007;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 130212595 rs11427465 T TA 311 PASS INDEL;BAVGPOST=0.993;BRSQ=0.665;LDAF=0.0070;AVGPOST=0.9928;RSQ=0.5882;ERATE=0.0017;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130212618 . AT A 513 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9803;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130212719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130212794 . CT C 142 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8565;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130212852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0059;AVGPOST=0.9972;RSQ=0.8090;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130212868 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6295;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130212893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130212966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.873;LDAF=0.0149;AVGPOST=0.9930;RSQ=0.8075;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130212980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0098;AVGPOST=0.9963;RSQ=0.8465;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130213004 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.7889;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130213081 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130213145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0596;AVGPOST=0.9988;RSQ=0.9913;ERATE=0.0003;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 130213186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8408;ERATE=0.0009;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130213259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0042;AVGPOST=0.9986;RSQ=0.8641;ERATE=0.0007;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130213266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0417;AVGPOST=0.9987;RSQ=0.9883;ERATE=0.0004;THETA=0.0012;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130213366 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0096;AVGPOST=0.9987;RSQ=0.9371;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130213409 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1605;AVGPOST=0.9979;RSQ=0.9932;ERATE=0.0003;THETA=0.0006;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 130213424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9024;ERATE=0.0008;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130213635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3359;AVGPOST=0.9962;RSQ=0.9931;ERATE=0.0006;THETA=0.0012;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 130213640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130213797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1593;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130213851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0082;AVGPOST=0.9975;RSQ=0.8725;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130213870 . GAA G 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130213894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130213969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6151;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130214031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3362;AVGPOST=0.9976;RSQ=0.9959;ERATE=0.0004;THETA=0.0011;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 130214190 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130214205 . AC A 1921 PASS INDEL;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0169;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130214205 . G GA 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3992;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130214223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4962;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130214277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0040;AVGPOST=0.9957;RSQ=0.5779;ERATE=0.0011;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130214333 . ACT A 1066 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9968;RSQ=0.8777;ERATE=0.0007;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130214366 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6090;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130214552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3356;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 130214553 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0131;AVGPOST=0.9994;RSQ=0.9803;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130214624 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130214692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.7676;ERATE=0.0019;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130214797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130214913 . GT G 12 PASS INDEL;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6860;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130215053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130215059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9336;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130215060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6948;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130215214 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6586;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130215258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0411;AVGPOST=0.9992;RSQ=0.9920;ERATE=0.0003;THETA=0.0009;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130215318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0345;AVGPOST=0.9985;RSQ=0.9818;ERATE=0.0005;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130215334 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0131;AVGPOST=0.9975;RSQ=0.9110;ERATE=0.0006;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130215339 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0076;AVGPOST=0.9983;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130215385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0074;AVGPOST=0.9982;RSQ=0.9059;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130215391 . G GA 23 PASS INDEL;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0030;AVGPOST=0.9962;RSQ=0.5193;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130215598 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1019;AVGPOST=0.9987;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130215722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130215740 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130216025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0033;AVGPOST=0.9976;RSQ=0.7164;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130216273 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5142;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130216282 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8442;AVGPOST=0.9986;RSQ=0.9957;ERATE=0.0004;THETA=0.0002;AC=1844;AN=2184 GT:DS:GL:BD 0.84432232 1 1 130216418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7598;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130216454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6569;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130216506 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5985;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130216559 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.8436;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=1842;AN=2184 GT:DS:GL:BD 0.84340662 1 1 130216625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0084;AVGPOST=0.9975;RSQ=0.8916;ERATE=0.0003;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130216807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130216843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5506;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130216914 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0160;AVGPOST=0.9979;RSQ=0.9514;ERATE=0.0005;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130216949 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1963;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 130217143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6728;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130217161 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2047;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 130217182 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130217289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130217554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130217622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0081;AVGPOST=0.9991;RSQ=0.9565;ERATE=0.0002;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130217651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4704;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130217652 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5565;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130217687 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8034;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130217791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9719;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130217841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130217845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0054;AVGPOST=0.9979;RSQ=0.8522;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130217927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130217943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130217958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9879;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130218068 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4357;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130218171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6353;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130218176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130218177 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130218276 . TC T 79 PASS INDEL;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7488;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130218483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.8389;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130218488 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8443;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 130218507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8973;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130218615 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0194;AVGPOST=0.9969;RSQ=0.9402;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130218634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130218761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0110;AVGPOST=0.9988;RSQ=0.9482;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130218844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130218850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4774;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130218973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2006;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 130219042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.9028;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130219103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8610;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130219125 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7257;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130219178 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7771;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 130219199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1791;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0004;THETA=0.0005;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130219304 . GC G 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130219430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7772;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130219448 . CT C 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5272;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130219473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5327;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130219526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2566;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0020;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 130219631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2567;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 130219678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130219758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7776;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 130219797 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0076;AVGPOST=0.9979;RSQ=0.8959;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130219855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0636;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 130219923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0048;AVGPOST=0.9964;RSQ=0.7549;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130220063 . T TG 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5312;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130220170 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2565;AVGPOST=0.9987;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 130220210 . GC G 1624 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0141;AVGPOST=0.9993;RSQ=0.9789;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130220236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0722;AVGPOST=0.9971;RSQ=0.9818;ERATE=0.0003;THETA=0.0002;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 130220306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7476;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130220326 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2423;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0005;THETA=0.0004;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 130220640 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8472;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130220653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0145;AVGPOST=0.9987;RSQ=0.9673;ERATE=0.0003;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130220671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0058;AVGPOST=0.9978;RSQ=0.8510;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130220676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1210;AVGPOST=0.9984;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 130220821 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2042;AVGPOST=0.9982;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 130220844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2410;AVGPOST=0.9957;RSQ=0.9919;ERATE=0.0006;THETA=0.0002;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 130220877 . T TTC 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.3976;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130220929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9275;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130220975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0044;AVGPOST=0.9982;RSQ=0.8185;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130220989 . A AT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130221030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130221063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6856;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130221187 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.8017;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130221234 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130221288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0202;AVGPOST=0.9997;RSQ=0.9933;ERATE=0.0003;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130221306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0073;AVGPOST=0.9986;RSQ=0.9095;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130221337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130221406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130221439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3523;AVGPOST=0.9967;RSQ=0.9943;ERATE=0.0005;THETA=0.0003;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 130221483 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9481;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130221520 . GC G 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8210;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130221600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.3513;AVGPOST=0.9953;RSQ=0.9931;ERATE=0.0005;THETA=0.0006;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 130221660 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4006;AVGPOST=0.9966;RSQ=0.9944;ERATE=0.0005;THETA=0.0010;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 130221714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7776;AVGPOST=0.9957;RSQ=0.9915;ERATE=0.0004;THETA=0.0004;AC=1698;AN=2184 GT:DS:GL:BD 0.77747256 1 1 130221872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0180;AVGPOST=0.9993;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130221875 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3519;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0005;THETA=0.0008;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 130221879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6365;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130221980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130222136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8023;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130222188 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8483;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130222224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8382;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130222225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130222359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9394;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130222378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9938;ERATE=0.0003;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130222484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130222609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0125;AVGPOST=0.9977;RSQ=0.9224;ERATE=0.0007;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130222680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8445;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130222696 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7299;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130222820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9524;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130222830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0417;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130222835 . AT A 1259 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9668;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130222894 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130223058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8746;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130223078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0114;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130223093 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130223109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130223119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9788;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130223336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130223354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.8040;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130223362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7090;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130223431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9700;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130223457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0068;AVGPOST=0.9996;RSQ=0.9730;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130223515 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9245;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130223547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7304;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130223652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9449;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130223682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130223730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0238;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130223945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0111;AVGPOST=0.9990;RSQ=0.9640;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130223993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7175;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130224051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6924;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130224092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3520;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 130224187 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6822;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130224265 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7704;AVGPOST=0.9951;RSQ=0.9897;ERATE=0.0006;THETA=0.0012;AC=1683;AN=2184 GT:DS:GL:BD 0.77060437 1 1 130224338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3986;AVGPOST=0.9965;RSQ=0.9941;ERATE=0.0005;THETA=0.0007;AC=872;AN=2184 GT:DS:GL:BD 0.39926741 0 1 130224400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7064;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130224416 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130224481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8439;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130224485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6070;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130224572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0180;AVGPOST=0.9996;RSQ=0.9895;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130224673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130224744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6738;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130224754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130224792 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9232;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130224797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5697;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130224831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0243;AVGPOST=0.9988;RSQ=0.9808;ERATE=0.0003;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130224991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7220;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130225058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.7946;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130225192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8869;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130225288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130225374 . TGGCAAAACTTTC T 332 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.7008;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130225440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4670;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130225458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130225525 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130225586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0180;AVGPOST=0.9996;RSQ=0.9888;ERATE=0.0004;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130225631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130225679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0031;AVGPOST=0.9977;RSQ=0.7242;ERATE=0.0010;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130225687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130225704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6967;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130225843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0417;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130225872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8178;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130225935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130225966 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130225994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130226041 rs71736489 A AT 24216 PASS INDEL;BAVGPOST=0.946;BRSQ=0.914;LDAF=0.5736;AVGPOST=0.9043;RSQ=0.8629;ERATE=0.0158;THETA=0.0004;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 130226117 rs72011604 T TTAAAAAAA 32779 PASS INDEL;BAVGPOST=0.936;BRSQ=0.889;LDAF=0.5677;AVGPOST=0.8589;RSQ=0.7969;ERATE=0.0375;THETA=0.0003;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 130226119 . G GT 69 PASS INDEL;BAVGPOST=0.996;BRSQ=0.424;LDAF=0.0158;AVGPOST=0.9769;RSQ=0.4530;ERATE=0.0043;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130226168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7930;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130226438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130226458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130226460 rs66615270 TG T 28905 PASS INDEL;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3028;AVGPOST=0.9913;RSQ=0.9846;ERATE=0.0013;THETA=0.0003;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 130226609 . G GTA 2200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130226614 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.9804;AVGPOST=0.9984;RSQ=0.9626;ERATE=0.0003;THETA=0.0006;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 130226738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130226874 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5785;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130227052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130227054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8784;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130227065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130227229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130227432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130227509 . GAC G 580 PASS INDEL;BAVGPOST=0.975;BRSQ=0.686;LDAF=0.0617;AVGPOST=0.9419;RSQ=0.5913;ERATE=0.0253;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130227512 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130227644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6908;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130227652 . A AC 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130227679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6428;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130227780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8419;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130227808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6100;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130227857 . T TG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.6872;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130227889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130228133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4995;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130228165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130228201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.1795;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130228218 . GA G 280 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0071;AVGPOST=0.9977;RSQ=0.8622;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130228681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5596;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130228729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6569;AVGPOST=0.9950;RSQ=0.9918;ERATE=0.0006;THETA=0.0006;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 130228900 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9369;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130229148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4703;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130229204 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8226;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130229270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9759;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130229295 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7209;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130229374 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4909;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130229550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.1635;AVGPOST=0.9848;RSQ=0.9666;ERATE=0.0006;THETA=0.0006;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 130230012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7841;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130230314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9585;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130230514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0138;AVGPOST=0.9964;RSQ=0.9015;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130230751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8809;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130230775 rs66730234 ACAAGTCT A 93952 PASS INDEL;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.6497;AVGPOST=0.9837;RSQ=0.9744;ERATE=0.0013;THETA=0.0004;AC=1423;AN=2184 GT:DS:GL:BD 0.65155679 1 1 130230957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0047;AVGPOST=0.9965;RSQ=0.6940;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130231254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8015;ERATE=0.0003;THETA=0.0082;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130231263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4890;AVGPOST=0.9915;RSQ=0.9890;ERATE=0.0005;THETA=0.0035;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 130231362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1411;AVGPOST=0.9970;RSQ=0.9920;ERATE=0.0004;THETA=0.0016;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 130231385 rs113697132 C CAGA 178 PASS INDEL;BAVGPOST=0.994;BRSQ=0.660;LDAF=0.0140;AVGPOST=0.9856;RSQ=0.5750;ERATE=0.0026;THETA=0.0047;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130231470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0316;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0062;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130231515 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130231538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1410;AVGPOST=0.9939;RSQ=0.9818;ERATE=0.0014;THETA=0.0003;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 130231613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130231614 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9994;RSQ=0.9919;ERATE=0.0003;THETA=0.0011;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130231712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130231739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5372;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130231744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0904;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0027;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 130231791 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.961;LDAF=0.0857;AVGPOST=0.9921;RSQ=0.9604;ERATE=0.0004;THETA=0.0023;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 130231814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0002;THETA=0.0050;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130231846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.866;LDAF=0.0152;AVGPOST=0.9959;RSQ=0.8897;ERATE=0.0007;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130231891 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0278;AVGPOST=0.9993;RSQ=0.9904;ERATE=0.0002;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130231904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.5240;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130231914 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0002;THETA=0.0010;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130231954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6635;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130232000 . T TTA 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4103;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130232091 . C CA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6172;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130232294 . TG T 275 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7578;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130232398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0725;AVGPOST=0.9993;RSQ=0.9958;ERATE=0.0002;THETA=0.0006;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 130232416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130232447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6536;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130232849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.739;LDAF=0.0060;AVGPOST=0.9979;RSQ=0.8509;ERATE=0.0005;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130232938 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3784;AVGPOST=0.9933;RSQ=0.9905;ERATE=0.0004;THETA=0.0002;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 130232991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2404;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0003;THETA=0.0009;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 130233011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130233044 . AT A 64 PASS INDEL;BAVGPOST=0.999;BRSQ=0.510;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4463;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130233051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3771;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0005;THETA=0.0002;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 130233231 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130233324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130233508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0081;AVGPOST=0.9963;RSQ=0.8151;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130233521 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130233538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0300;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130233552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3670;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=801;AN=2184 GT:DS:GL:BD 0.36675823 0 1 130233577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8760;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130233656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4754;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130233700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130233717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0804;AVGPOST=0.9971;RSQ=0.9838;ERATE=0.0004;THETA=0.0004;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 130233833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9992;RSQ=0.9643;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130233835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3757;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0003;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 130233856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1227;AVGPOST=0.9986;RSQ=0.9945;ERATE=0.0004;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 130233900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9030;ERATE=0.0007;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130233901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.615;LDAF=0.0120;AVGPOST=0.9874;RSQ=0.5789;ERATE=0.0021;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130233907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0687;AVGPOST=0.9990;RSQ=0.9935;ERATE=0.0003;THETA=0.0002;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 130233913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3846;AVGPOST=0.9913;RSQ=0.9864;ERATE=0.0013;THETA=0.0004;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 130233918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0067;AVGPOST=0.9974;RSQ=0.8407;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130233931 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0002;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130234244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5893;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130234364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130234381 . TGTTA T 328 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7202;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130234398 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0700;AVGPOST=0.9966;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 130234466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8544;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130234504 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4699;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130234523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8983;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130234534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6526;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130234605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9551;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130234606 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0338;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0002;THETA=0.0011;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130234628 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.998;LDAF=0.3767;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=821;AN=2184 GT:DS:GL:BD 0.37591577 0 1 130234793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9126;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130234806 . AATTGT A 164 PASS INDEL;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5009;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130234811 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9189;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130234819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.995;LDAF=0.4877;AVGPOST=0.9961;RSQ=0.9945;ERATE=0.0004;THETA=0.0011;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 130234836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0277;AVGPOST=0.9994;RSQ=0.9909;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130235046 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9860;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130235057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0163;AVGPOST=0.9993;RSQ=0.9805;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130235139 rs34575120 A AT 32927 PASS INDEL;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.3759;AVGPOST=0.9936;RSQ=0.9895;ERATE=0.0007;THETA=0.0004;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 130235201 . T TA 8568 PASS INDEL;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.3718;AVGPOST=0.9896;RSQ=0.9839;ERATE=0.0009;THETA=0.0008;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 130235202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1701;AVGPOST=0.9983;RSQ=0.9953;ERATE=0.0005;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 130235251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9995;RSQ=0.9772;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130235270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7804;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130235298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130235366 . GTAT G 5850 PASS INDEL;BAVGPOST=0.991;BRSQ=0.912;LDAF=0.0493;AVGPOST=0.9865;RSQ=0.9008;ERATE=0.0005;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130235426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3775;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0007;THETA=0.0006;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 130235469 . TTGTC T 213 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9983;RSQ=0.2826;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130235539 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5938;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130235565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.890;LDAF=0.0404;AVGPOST=0.9912;RSQ=0.9215;ERATE=0.0003;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130235777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9809;ERATE=0.0002;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130235879 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130236046 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4355;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130236077 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4891;AVGPOST=0.9952;RSQ=0.9926;ERATE=0.0012;THETA=0.0005;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 130236117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7401;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130236129 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0150;AVGPOST=0.9968;RSQ=0.9173;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130236154 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5330;AVGPOST=0.9964;RSQ=0.9943;ERATE=0.0005;THETA=0.0004;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 130236171 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2620;AVGPOST=0.9931;RSQ=0.9872;ERATE=0.0006;THETA=0.0004;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 130236176 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6795;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130236271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2427;AVGPOST=0.9970;RSQ=0.9932;ERATE=0.0006;THETA=0.0032;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 130236316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130236332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8713;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130236362 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130236372 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8199;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130236398 . TA T 124 PASS INDEL;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7990;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130236450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8590;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130236455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9503;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130236479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2433;AVGPOST=0.9952;RSQ=0.9897;ERATE=0.0007;THETA=0.0008;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 130236529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0756;AVGPOST=0.9981;RSQ=0.9880;ERATE=0.0005;THETA=0.0009;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130236571 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130236635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.636;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.7785;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130236665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.910;LDAF=0.4894;AVGPOST=0.9193;RSQ=0.8810;ERATE=0.0164;THETA=0.0002;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 130236705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.647;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8639;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130236731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.5320;AVGPOST=0.9941;RSQ=0.9905;ERATE=0.0008;THETA=0.0003;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 130236923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130236944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5333;AVGPOST=0.9958;RSQ=0.9934;ERATE=0.0011;THETA=0.0002;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 130236965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7465;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130236983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6950;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130237011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8053;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=1759;AN=2184 GT:DS:GL:BD 0.80540293 1 1 130237104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8124;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130237131 . T TA 103 PASS INDEL;BAVGPOST=0.999;BRSQ=0.460;LDAF=0.0040;AVGPOST=0.9947;RSQ=0.5026;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130237145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1850;AVGPOST=0.9971;RSQ=0.9929;ERATE=0.0005;THETA=0.0004;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130237265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0119;AVGPOST=0.9976;RSQ=0.9210;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130237278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7199;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130237449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5800;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130237497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5325;AVGPOST=0.9969;RSQ=0.9952;ERATE=0.0007;THETA=0.0001;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 130237498 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130237533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4856;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130237701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5311;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0002;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 130237727 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130237861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5510;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130237870 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2432;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 130237940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130237951 rs66775181 AAATT A 22654 PASS INDEL;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.2429;AVGPOST=0.9975;RSQ=0.9937;ERATE=0.0006;THETA=0.0004;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 130238017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130238105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6969;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130238290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8336;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130238313 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7762;AVGPOST=0.9981;RSQ=0.9958;ERATE=0.0004;THETA=0.0022;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 130238530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130238610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8580;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130238643 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130238655 rs66716035 A AT 11733 PASS INDEL;BAVGPOST=0.960;BRSQ=0.887;LDAF=0.1939;AVGPOST=0.9615;RSQ=0.9103;ERATE=0.0061;THETA=0.0002;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 130238671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5041;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130238708 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7676;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130238739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.9174;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130238840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2709;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0004;THETA=0.0002;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 130238886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7660;AVGPOST=0.9967;RSQ=0.9926;ERATE=0.0007;THETA=0.0006;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 130238943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7765;AVGPOST=0.9977;RSQ=0.9947;ERATE=0.0007;THETA=0.0002;AC=1697;AN=2184 GT:DS:GL:BD 0.77701467 1 1 130239245 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4800;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130239389 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2649;AVGPOST=0.9955;RSQ=0.9919;ERATE=0.0005;THETA=0.0004;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 130239502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0058;AVGPOST=0.9928;RSQ=0.5209;ERATE=0.0010;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130239543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.4949;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130239557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2328;AVGPOST=0.9968;RSQ=0.9922;ERATE=0.0008;THETA=0.0003;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 130239718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.8966;AVGPOST=0.9963;RSQ=0.9862;ERATE=0.0004;THETA=0.0016;AC=1959;AN=2184 GT:DS:GL:BD 0.89697802 1 1 130239764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0748;AVGPOST=0.9987;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130239834 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6771;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130240094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8175;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130240107 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7739;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130240310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7664;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0001;AC=1674;AN=2184 GT:DS:GL:BD 0.76648355 1 1 130240642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130240815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.8936;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130240969 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8043;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=1757;AN=2184 GT:DS:GL:BD 0.80448717 1 1 130241018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.916;LDAF=0.0198;AVGPOST=0.9958;RSQ=0.9127;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130241088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8210;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130241113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.8099;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130247271 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9798;AVGPOST=0.9997;RSQ=0.9933;ERATE=0.0004;THETA=0.0013;AC=2140;AN=2184 GT:DS:GL:BD 0.97985345 1 1 130247453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130247464 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6132;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130247482 . CA C 20 PASS INDEL;BAVGPOST=0.992;BRSQ=0.372;LDAF=0.0061;AVGPOST=0.9910;RSQ=0.3489;ERATE=0.0019;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130247562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130247639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.8032;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130247735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5725;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130247820 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.722;LDAF=0.0062;AVGPOST=0.9961;RSQ=0.7383;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130247872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7491;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130247985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4303;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130248316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0053;AVGPOST=0.9971;RSQ=0.7789;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130248375 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130248602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0077;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130248680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3900;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130248696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130248773 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6824;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130248880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9989;RSQ=0.9684;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130249131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6197;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130249132 . TA T 194 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6596;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130249227 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4561;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130249238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5910;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130249337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.745;LDAF=0.0150;AVGPOST=0.9921;RSQ=0.7923;ERATE=0.0004;THETA=0.0025;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130249368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0369;AVGPOST=0.9984;RSQ=0.9834;ERATE=0.0004;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 130249400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6491;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130249406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9704;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130249565 . CTT C 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5062;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130249802 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6310;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130249859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130249889 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 130249944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250044 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5730;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130250140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130250221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0300;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130250325 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250367 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5590;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9589;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130250612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5470;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250961 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130250965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130251083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130251146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9250;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130251178 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130251325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0637;AVGPOST=0.9978;RSQ=0.9861;ERATE=0.0004;THETA=0.0008;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 130251329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130251418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130251536 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7032;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130251583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130251765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130251801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130251887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130252023 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8889;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130252104 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130252109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0104;AVGPOST=0.9974;RSQ=0.9088;ERATE=0.0004;THETA=0.0030;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130252126 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130252162 . TA T 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9981;RSQ=0.8642;ERATE=0.0005;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130252186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130252225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130252297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7815;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130252359 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7205;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130252395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9239;ERATE=0.0003;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130252414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130252475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.6997;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130252657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.8976;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130252857 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8254;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130252961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130253054 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130253179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8662;ERATE=0.0002;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130253221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.4466;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130253388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1344;AVGPOST=0.9977;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130253406 . CTA C 1041 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0091;AVGPOST=0.9981;RSQ=0.9220;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130253464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130253561 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0084;AVGPOST=0.9984;RSQ=0.9245;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130253739 . TAG T 676 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0056;AVGPOST=0.9994;RSQ=0.9498;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130254033 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.8969;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 130254102 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130254243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130254269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130254298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130254333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0002;THETA=0.0012;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130254339 . T TA 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6951;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130254424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130254488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2128;AVGPOST=0.9974;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 130254504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254511 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.6005;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7827;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130254685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130254828 . TC T 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6129;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8040;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130254925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7220;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130254957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8966;AVGPOST=0.9991;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 130254970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0002;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130254978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9535;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130255094 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130255097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6455;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130255196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7780;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130255204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7647;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130255258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1343;AVGPOST=0.9972;RSQ=0.9897;ERATE=0.0005;THETA=0.0007;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130255269 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1343;AVGPOST=0.9983;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 130255327 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130255391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9988;RSQ=0.9726;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130255613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130255671 . AACAC A 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5957;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130255719 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.9198;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130255800 . CTG C 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3926;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130255866 . TCA T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4024;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130256032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0061;AVGPOST=0.9967;RSQ=0.7953;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130256120 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8317;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130256138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1337;AVGPOST=0.9962;RSQ=0.9863;ERATE=0.0007;THETA=0.0008;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130256150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6247;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130256192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.642;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7569;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130256197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6813;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130256267 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0079;AVGPOST=0.9986;RSQ=0.9209;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130256382 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7233;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130257002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130257021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9625;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130257023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130257027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130257053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0002;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130257151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6620;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130257255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3641;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0004;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 130257350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6662;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130257391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1587;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 130257420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130257487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6571;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130257633 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9986;RSQ=0.9181;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130257680 . AT A 131 PASS INDEL;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0052;AVGPOST=0.9952;RSQ=0.6521;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130257687 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0170;AVGPOST=0.9988;RSQ=0.9699;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130257701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.979;LDAF=0.1122;AVGPOST=0.9973;RSQ=0.9894;ERATE=0.0003;THETA=0.0002;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 130257748 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1958;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0002;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 130257769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1953;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 130257793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.6700;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130257874 . A AT 59 PASS INDEL;BAVGPOST=0.978;BRSQ=0.498;LDAF=0.0506;AVGPOST=0.9381;RSQ=0.4900;ERATE=0.0146;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130257896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0840;AVGPOST=0.9989;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 130257939 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0222;AVGPOST=0.9995;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130258000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9992;RSQ=0.9421;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130258046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8335;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130258094 rs5779923 A AG 41009 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3625;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0006;THETA=0.0003;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 130258230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130258264 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7166;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130258271 . AT A 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4195;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130258356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5594;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130258525 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3679;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0008;THETA=0.0039;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 130258560 . CTG C 158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130258593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0400;AVGPOST=0.9988;RSQ=0.9879;ERATE=0.0002;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130258597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5046;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130258637 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130258641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.6320;AVGPOST=0.9936;RSQ=0.9911;ERATE=0.0007;THETA=0.0006;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 130258709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9399;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130258748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0059;AVGPOST=0.9969;RSQ=0.7922;ERATE=0.0006;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130258762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9886;ERATE=0.0002;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130258921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1014;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0002;THETA=0.0006;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130259166 rs35944708 C CAA 63376 PASS INDEL;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3619;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0005;THETA=0.0002;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 130259184 . A AAC 26474 PASS INDEL;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.3578;AVGPOST=0.9925;RSQ=0.9887;ERATE=0.0011;THETA=0.0007;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 130259185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3639;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0009;THETA=0.0009;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130259464 . G GC 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.516;LDAF=0.0038;AVGPOST=0.9954;RSQ=0.5854;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130259491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.7571;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130259527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0222;AVGPOST=0.9993;RSQ=0.9871;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130259530 . AG A 281 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130259534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0104;AVGPOST=0.9976;RSQ=0.9269;ERATE=0.0002;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130259592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130259697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130259715 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130259719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130259783 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130259785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0379;AVGPOST=0.9991;RSQ=0.9914;ERATE=0.0002;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130259840 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130259853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6993;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130259930 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9033;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130259966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.9987;AVGPOST=0.9993;RSQ=0.7931;ERATE=0.0003;THETA=0.0003;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 130260021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130260221 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260273 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260346 . C CA 272 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6866;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130260480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7380;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130260511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6760;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260533 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0132;AVGPOST=0.9973;RSQ=0.9155;ERATE=0.0005;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130260571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3636;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0007;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130260639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5946;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130260733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130260902 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9126;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130260979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7037;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130261049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130261097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130261112 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3686;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 130261248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0174;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130261253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9080;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130261279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.9187;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130261303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3637;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130261387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6749;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130261712 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3638;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130261760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130261915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0002;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130262130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8068;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130262182 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1967;AVGPOST=0.9981;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 130262251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0993;AVGPOST=0.9987;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 130262252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3642;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0006;THETA=0.0002;AC=797;AN=2184 GT:DS:GL:BD 0.36492673 0 1 130262303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130262412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6428;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130262418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.8950;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130262437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0832;AVGPOST=0.9991;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 130262451 rs61297937 A AG 1358 PASS INDEL;BAVGPOST=0.970;BRSQ=0.820;LDAF=0.1046;AVGPOST=0.9436;RSQ=0.7639;ERATE=0.0101;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 130262498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3900;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0005;THETA=0.0003;AC=852;AN=2184 GT:DS:GL:BD 0.39010990 0 1 130262660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130262866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7225;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130263000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130263053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7091;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130263054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2133;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 130263064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0752;AVGPOST=0.9988;RSQ=0.9937;ERATE=0.0003;THETA=0.0002;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130263073 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3228;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 130263081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7993;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130263173 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9717;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130263187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0096;AVGPOST=0.9978;RSQ=0.9067;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130263203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0680;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 130263213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.647;LDAF=0.0043;AVGPOST=0.9971;RSQ=0.7446;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130263253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9185;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130263359 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0877;AVGPOST=0.9921;RSQ=0.9619;ERATE=0.0013;THETA=0.0003;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 130263377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130263395 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6075;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130263398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130263567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7585;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130263589 . GA G 268 PASS INDEL;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8738;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130263610 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8446;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130263614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5563;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130263716 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7542;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130263740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130263749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0755;AVGPOST=0.9988;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130263888 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9719;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130263944 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5370;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 130264056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8607;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130264152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130264195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130264262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7826;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130264306 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7999;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130264342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9471;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130264411 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9548;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130264734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.7236;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130264750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9311;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130264766 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130264814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4734;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0006;THETA=0.0004;AC=1033;AN=2184 GT:DS:GL:BD 0.47298536 0 1 130264846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6518;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130265008 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5341;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130265011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9478;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130265042 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5576;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130265086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7462;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130265119 . G GA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7776;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130265309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7417;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130265493 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9209;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130265501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8743;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0004;THETA=0.0003;AC=1910;AN=2184 GT:DS:GL:BD 0.87454212 1 1 130265541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9112;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130265662 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0069;AVGPOST=0.9980;RSQ=0.8743;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130265677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1018;AVGPOST=0.9976;RSQ=0.9889;ERATE=0.0005;THETA=0.0002;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130265768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7215;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130265791 . TTA T 247 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7687;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130265821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5794;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130265980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5973;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130265995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1026;AVGPOST=0.9989;RSQ=0.9943;ERATE=0.0005;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130266022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5553;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0007;THETA=0.0004;AC=1212;AN=2184 GT:DS:GL:BD 0.55494505 1 1 130266059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8762;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130266130 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0107;AVGPOST=0.9997;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130266230 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0056;AVGPOST=0.9982;RSQ=0.8723;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130266254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0879;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 130266263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.3081;AVGPOST=0.9950;RSQ=0.9912;ERATE=0.0005;THETA=0.0004;AC=673;AN=2184 GT:DS:GL:BD 0.30815017 0 1 130266312 . GAAAT G 253 PASS INDEL;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130266324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130266402 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.9955;AVGPOST=0.9980;RSQ=0.8107;ERATE=0.0004;THETA=0.0004;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 130266421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6023;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130266487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0110;AVGPOST=0.9991;RSQ=0.9656;ERATE=0.0004;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130266668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7880;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130266744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130266943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9608;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130267013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7227;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130267074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130267076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130267128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8844;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130267129 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0217;AVGPOST=0.9994;RSQ=0.9876;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130267191 . TATA T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5805;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130267271 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130267310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7257;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130267314 . T TGC 7000 PASS INDEL;BAVGPOST=0.942;BRSQ=0.804;LDAF=0.1833;AVGPOST=0.9358;RSQ=0.8298;ERATE=0.0097;THETA=0.0002;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 130267353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.756;LDAF=0.0064;AVGPOST=0.9955;RSQ=0.7184;ERATE=0.0011;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130267376 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7125;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130267378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1822;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 130267429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1833;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0004;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130267484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130267647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1662;AVGPOST=0.9944;RSQ=0.9847;ERATE=0.0004;THETA=0.0013;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 130267667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0240;AVGPOST=0.9991;RSQ=0.9829;ERATE=0.0003;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130267710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6626;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130267730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8117;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130267844 rs34427825 AG A 32511 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2135;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0004;THETA=0.0004;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 130267947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7881;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130268044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9458;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130268061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7270;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130268211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0436;AVGPOST=0.9950;RSQ=0.9551;ERATE=0.0005;THETA=0.0003;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 130268212 . C CT 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8255;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130268300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0025;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130268374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2047;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 130268493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9095;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130268506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130268509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5602;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130268784 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7227;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130268810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8889;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130268902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4994;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130268966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6921;AVGPOST=0.9957;RSQ=0.9928;ERATE=0.0006;THETA=0.0009;AC=1515;AN=2184 GT:DS:GL:BD 0.69368130 1 1 130269054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6692;ERATE=0.0004;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130269095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5855;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130269146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6225;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130269152 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7585;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130269378 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0720;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130269448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6648;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 130269468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130269511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4356;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130269661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6671;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130269716 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130269731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1028;AVGPOST=0.9952;RSQ=0.9824;ERATE=0.0003;THETA=0.0002;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 130269737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8935;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130269800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7604;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130269883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6579;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130269936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130270004 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130270056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130270149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130270552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7479;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130270579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130270685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0070;AVGPOST=0.9953;RSQ=0.7597;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130270764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5746;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130270768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6252;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130270879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130270887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8190;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130271023 . CA C 1768 PASS INDEL;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0119;AVGPOST=0.9975;RSQ=0.9215;ERATE=0.0006;THETA=0.0043;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130271038 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130271178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6120;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130271271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8795;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130271385 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2143;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 130271442 . CAGTT C 760 PASS INDEL;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130271537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130271553 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.8961;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130271576 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130271655 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0555;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0007;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130271784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130271805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1595;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 130271822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6660;AVGPOST=0.9926;RSQ=0.9874;ERATE=0.0011;THETA=0.0004;AC=1458;AN=2184 GT:DS:GL:BD 0.66758239 1 1 130272119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.7205;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130272166 . CA C 1184 PASS INDEL;BAVGPOST=0.973;BRSQ=0.905;LDAF=0.1445;AVGPOST=0.9833;RSQ=0.9547;ERATE=0.0009;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130272316 . AAT A 1160 PASS INDEL;BAVGPOST=0.973;BRSQ=0.903;LDAF=0.1440;AVGPOST=0.9872;RSQ=0.9663;ERATE=0.0005;THETA=0.0007;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 130272322 . AT A 14215 PASS INDEL;BAVGPOST=0.980;BRSQ=0.935;LDAF=0.1541;AVGPOST=0.9810;RSQ=0.9536;ERATE=0.0021;THETA=0.0005;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 130272323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130272356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.565;LDAF=0.0103;AVGPOST=0.9882;RSQ=0.5772;ERATE=0.0011;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130272423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130272424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2372;AVGPOST=0.9974;RSQ=0.9956;ERATE=0.0004;THETA=0.0023;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 130272426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6482;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1417;AN=2184 GT:DS:GL:BD 0.64880955 1 1 130272497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9577;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130272595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130272619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130272681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130272703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2599;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 130272714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.4917;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130272813 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130273101 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130273167 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0225;AVGPOST=0.9971;RSQ=0.9456;ERATE=0.0006;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130273263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8267;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130273311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130273432 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.5032;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130273525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130273729 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130273758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130273773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130273847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3137;AVGPOST=0.9956;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=685;AN=2184 GT:DS:GL:BD 0.31364468 0 1 130273852 . C CCA 16536 PASS INDEL;BAVGPOST=0.968;BRSQ=0.944;LDAF=0.2817;AVGPOST=0.9836;RSQ=0.9743;ERATE=0.0004;THETA=0.0003;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 130273853 . CTT C 366 PASS INDEL;BAVGPOST=0.908;BRSQ=0.556;LDAF=0.0836;AVGPOST=0.9162;RSQ=0.6516;ERATE=0.0006;THETA=0.0005;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 130273854 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2835;AVGPOST=0.9875;RSQ=0.9811;ERATE=0.0003;THETA=0.0002;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 130273855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2826;AVGPOST=0.9862;RSQ=0.9797;ERATE=0.0003;THETA=0.0002;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 130273856 . T TAC 9594 PASS INDEL;BAVGPOST=0.968;BRSQ=0.944;LDAF=0.2770;AVGPOST=0.9765;RSQ=0.9633;ERATE=0.0007;THETA=0.0006;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 130273856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130273920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130274007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0170;AVGPOST=0.9986;RSQ=0.9701;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130274025 . AG A 230 PASS INDEL;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130274151 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9499;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130274165 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3166;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0006;THETA=0.0002;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 130274195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130274216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130274256 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.4866;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130274286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.7050;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130274321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3161;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0006;THETA=0.0004;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 130274481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4484;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130274577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7677;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130274657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9311;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130274698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9994;RSQ=0.9709;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130274835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5372;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130274993 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7377;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130275018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130275164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130275193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3157;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 130275244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9279;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130275279 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130275359 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7260;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130275539 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9818;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130275543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130275564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6480;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0006;THETA=0.0012;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 130275621 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3144;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 130275663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6455;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0004;THETA=0.0005;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 130275682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130275802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8701;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130275935 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8833;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130275967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2318;AVGPOST=0.9901;RSQ=0.9789;ERATE=0.0005;THETA=0.0006;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 130276078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6505;ERATE=0.0005;THETA=0.0077;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130276317 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0105;AVGPOST=0.9987;RSQ=0.9549;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130276367 . TA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9309;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130276538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0118;AVGPOST=0.9965;RSQ=0.8777;ERATE=0.0004;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130276585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5334;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130276607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8359;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130276650 . C CT 572 PASS INDEL;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7980;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130276791 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130276814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130276842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0290;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130277062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.8198;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130277154 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0048;AVGPOST=0.9988;RSQ=0.9104;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130277181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7320;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130277214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9654;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130277277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130277291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9801;ERATE=0.0003;THETA=0.0040;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130277341 . TCA T 139 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.7028;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130277463 rs112896706 A AC 580 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9425;ERATE=0.0003;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130277486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8788;ERATE=0.0003;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130277611 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9298;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130277845 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9424;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130277902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130277909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0073;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130278110 . CTG C 126 PASS INDEL;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7764;ERATE=0.0003;THETA=0.0105;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130278182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2399;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 130278441 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2416;AVGPOST=0.9976;RSQ=0.9947;ERATE=0.0006;THETA=0.0004;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 130278515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9608;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130278626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130278643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.3834;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0006;THETA=0.0002;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 130278696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130278708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9262;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130278710 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1679;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 130278786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6362;AVGPOST=0.9959;RSQ=0.9931;ERATE=0.0010;THETA=0.0004;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 130278805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7110;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130278905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130279001 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0081;AVGPOST=0.9991;RSQ=0.9520;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130279160 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130279373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6457;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130279410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5674;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130279517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6962;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130279685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130279849 . CA C 12127 PASS INDEL;BAVGPOST=0.995;BRSQ=0.453;LDAF=0.9847;AVGPOST=0.9822;RSQ=0.5373;ERATE=0.0027;THETA=0.0002;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 130279891 . AGAAAAACAAG A 1716 PASS INDEL;BAVGPOST=0.995;BRSQ=0.874;LDAF=0.0095;AVGPOST=0.9951;RSQ=0.8106;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130280219 rs68083910 AAAAC A 30476 PASS INDEL;BAVGPOST=0.993;BRSQ=0.994;LDAF=0.2419;AVGPOST=0.9920;RSQ=0.9837;ERATE=0.0027;THETA=0.0003;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 130280222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130280280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130280348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130280351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3226;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0002;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 130280423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130280605 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130280655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6491;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=1417;AN=2184 GT:DS:GL:BD 0.64880955 1 1 130280675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130280678 . G GC 2639 PASS INDEL;BAVGPOST=0.972;BRSQ=0.897;LDAF=0.1549;AVGPOST=0.9841;RSQ=0.9555;ERATE=0.0007;THETA=0.0002;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 130280738 rs79608501 C CT 20516 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1629;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 130280740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130280838 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0157;AVGPOST=0.9990;RSQ=0.9734;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130280839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130280864 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.6431;AVGPOST=0.9969;RSQ=0.9945;ERATE=0.0013;THETA=0.0005;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 130280905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9066;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130281240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1671;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0035;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 130281255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9930;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130281277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7348;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281282 . T TGA 1070 PASS INDEL;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9498;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130281286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7080;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130281429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130281655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8693;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130281746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6399;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 130281747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8763;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130281801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130282013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8254;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130282085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130282122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0135;AVGPOST=0.9957;RSQ=0.8717;ERATE=0.0006;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130282126 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5586;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130282281 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.9510;AVGPOST=0.9959;RSQ=0.9746;ERATE=0.0005;THETA=0.0007;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 130282426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0027;AVGPOST=0.9965;RSQ=0.5108;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130282505 . CT C 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4038;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130282516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9976;RSQ=0.8862;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130282523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.749;LDAF=0.0077;AVGPOST=0.9942;RSQ=0.7128;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130282631 . AT A 305 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9130;ERATE=0.0004;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130282668 . TATATATATA T 40427 PASS INDEL;BAVGPOST=0.883;BRSQ=0.630;LDAF=0.8113;AVGPOST=0.8541;RSQ=0.6467;ERATE=0.0160;THETA=0.0003;AC=1863;AN=2184 GT:DS:GL:BD 0.85302198 1 1 130282768 rs56310891 TATATATA T 37774 PASS INDEL;BAVGPOST=0.922;BRSQ=0.684;LDAF=0.8706;AVGPOST=0.9197;RSQ=0.7492;ERATE=0.0067;THETA=0.0011;AC=1936;AN=2184 GT:DS:GL:BD 0.88644689 1 1 130282770 rs56061300 TATA T 8214 PASS INDEL;BAVGPOST=0.859;BRSQ=0.551;LDAF=0.7999;AVGPOST=0.8031;RSQ=0.5102;ERATE=0.0232;THETA=0.0022;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 130282772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.971;LDAF=0.9465;AVGPOST=0.9956;RSQ=0.9691;ERATE=0.0006;THETA=0.0008;AC=2071;AN=2184 GT:DS:GL:BD 0.94826007 1 1 130282845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9710;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130282869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6871;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130282886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5814;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130282920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.3953;ERATE=0.0008;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130282987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.948;LDAF=0.8561;AVGPOST=0.9856;RSQ=0.9608;ERATE=0.0022;THETA=0.0005;AC=1881;AN=2184 GT:DS:GL:BD 0.86126375 1 1 130283008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9489;AVGPOST=0.9984;RSQ=0.9885;ERATE=0.0004;THETA=0.0050;AC=2073;AN=2184 GT:DS:GL:BD 0.94917583 1 1 130283071 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130283223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5438;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130283380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4764;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130283609 rs111682485 G GA 120841 PASS INDEL;BAVGPOST=0.993;BRSQ=0.871;LDAF=0.9746;AVGPOST=0.9919;RSQ=0.8896;ERATE=0.0006;THETA=0.0010;AC=2135;AN=2184 GT:DS:GL:BD 0.97756410 1 1 130283708 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8602;ERATE=0.0003;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130283852 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130283879 . GAA G 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7373;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130283951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9797;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130283955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130284123 . AG A 47129 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9992;AVGPOST=0.9983;RSQ=0.1810;ERATE=0.0005;THETA=0.0013;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 130284153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5933;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130284213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.9502;AVGPOST=0.9991;RSQ=0.9930;ERATE=0.0004;THETA=0.0032;AC=2076;AN=2184 GT:DS:GL:BD 0.95054942 1 1 130284309 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5058;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130284394 . AAAT A 47 PASS INDEL;BAVGPOST=0.993;BRSQ=0.560;LDAF=0.0206;AVGPOST=0.9723;RSQ=0.4244;ERATE=0.0063;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130284438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0148;AVGPOST=0.9995;RSQ=0.9830;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130284459 . ATTG A 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130284561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.864;LDAF=0.9460;AVGPOST=0.9872;RSQ=0.9184;ERATE=0.0003;THETA=0.0002;AC=2073;AN=2184 GT:DS:GL:BD 0.94917583 1 1 130284689 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.883;LDAF=0.9236;AVGPOST=0.9793;RSQ=0.9018;ERATE=0.0007;THETA=0.0010;AC=2026;AN=2184 GT:DS:GL:BD 0.92765570 1 1 130284694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.861;LDAF=0.8970;AVGPOST=0.9488;RSQ=0.8093;ERATE=0.0086;THETA=0.0010;AC=1993;AN=2184 GT:DS:GL:BD 0.91254580 1 1 130284713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.0763;ERATE=0.0005;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130284760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6860;ERATE=0.0004;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130284778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0004;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130284821 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0214;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130284949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0656;AVGPOST=0.9986;RSQ=0.9924;ERATE=0.0003;THETA=0.0007;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 130284959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0349;AVGPOST=0.9996;RSQ=0.9951;ERATE=0.0003;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130285000 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0136;AVGPOST=0.9994;RSQ=0.9772;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130285015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.9832;AVGPOST=0.9983;RSQ=0.9601;ERATE=0.0004;THETA=0.0021;AC=2148;AN=2184 GT:DS:GL:BD 0.98351645 1 1 130285056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9772;ERATE=0.0004;THETA=0.0023;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130285060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6697;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130285254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0193;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130285314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0336;AVGPOST=0.9988;RSQ=0.9863;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130285315 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9481;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0004;THETA=0.0009;AC=2071;AN=2184 GT:DS:GL:BD 0.94826007 1 1 130285390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130285436 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9138;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0015;AC=1996;AN=2184 GT:DS:GL:BD 0.91391939 1 1 130285469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130285472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130285563 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130285569 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5470;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130285643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130285782 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130285808 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9519;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0007;AC=2079;AN=2184 GT:DS:GL:BD 0.95192307 1 1 130286028 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286029 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130286044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130286048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130286284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130286450 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130286630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130286655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.973;LDAF=0.1092;AVGPOST=0.9900;RSQ=0.9654;ERATE=0.0014;THETA=0.0009;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 130286698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9385;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130286727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9587;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130286775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130286854 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.6928;AVGPOST=0.9810;RSQ=0.9696;ERATE=0.0004;THETA=0.0005;AC=1511;AN=2184 GT:DS:GL:BD 0.69184983 1 1 130286867 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1486;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 130286919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130286966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130287085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5365;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130287261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6550;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130287278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0078;AVGPOST=0.9931;RSQ=0.6752;ERATE=0.0012;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130287280 . CA C 36 PASS INDEL;BAVGPOST=0.974;BRSQ=0.421;LDAF=0.0365;AVGPOST=0.9525;RSQ=0.4610;ERATE=0.0097;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130287322 . AAAAG A 876 PASS INDEL;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9027;ERATE=0.0005;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130287343 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1453;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0011;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 130287389 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3282;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 130287425 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1820;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0004;THETA=0.0007;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 130287505 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130287542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130287559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130287674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130287710 . GA G 377 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130287716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8757;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130287724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3322;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0005;THETA=0.0007;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 130287749 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0107;AVGPOST=0.9969;RSQ=0.8750;ERATE=0.0007;THETA=0.0034;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130287830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0146;AVGPOST=0.9973;RSQ=0.9308;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130287885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0060;AVGPOST=0.9987;RSQ=0.9160;ERATE=0.0004;THETA=0.0036;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130287937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.963;LDAF=0.0603;AVGPOST=0.9920;RSQ=0.9499;ERATE=0.0004;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 130287938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7579;ERATE=0.0009;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130288111 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1729;AVGPOST=0.9968;RSQ=0.9921;ERATE=0.0010;THETA=0.0006;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 130288125 . CAG C 55 PASS INDEL;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3304;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130288127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1383;AVGPOST=0.9987;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 130288246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130288358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.6642;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130288406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7842;ERATE=0.0004;THETA=0.0049;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130288427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130288548 . GCTTTCGAT G 395 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5581;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130288583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130288698 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1682;AVGPOST=0.9968;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 130288716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1936;AVGPOST=0.9979;RSQ=0.9952;ERATE=0.0006;THETA=0.0007;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 130288807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6235;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130288840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.601;LDAF=0.0038;AVGPOST=0.9958;RSQ=0.5832;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130288841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5754;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130288960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.966;LDAF=0.1925;AVGPOST=0.9936;RSQ=0.9864;ERATE=0.0012;THETA=0.0003;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 130288979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8599;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130289071 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130289126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1455;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0009;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 130289136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9092;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130289257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1940;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0006;THETA=0.0007;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 130289276 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9023;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130289295 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3476;AVGPOST=0.9967;RSQ=0.9950;ERATE=0.0006;THETA=0.0004;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130289310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130289360 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1934;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 130289372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130289379 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1938;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0004;THETA=0.0007;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 130289451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7969;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130289491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1939;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0003;THETA=0.0011;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 130289518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5788;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130289593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9004;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130289629 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7251;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130289687 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4378;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130289833 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8458;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130289837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9260;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130289944 . AAAAC A 219 PASS INDEL;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0087;AVGPOST=0.9902;RSQ=0.5155;ERATE=0.0046;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130290066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8788;ERATE=0.0003;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130290187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130290307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130290349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8054;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130290399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130290508 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8348;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130290529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130290584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1937;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 130290591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1449;AVGPOST=0.9990;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 130290597 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6616;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130290671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8303;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130290696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130290733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1451;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0011;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 130290767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130290836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8778;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130290837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290845 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290873 . T TG 3070 PASS INDEL;BAVGPOST=0.974;BRSQ=0.908;LDAF=0.1559;AVGPOST=0.9871;RSQ=0.9678;ERATE=0.0011;THETA=0.0010;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 130290884 rs11446662 G GC 23033 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1666;AVGPOST=0.9972;RSQ=0.9934;ERATE=0.0004;THETA=0.0019;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 130290886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8534;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130290899 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7851;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130290900 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3583;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0003;THETA=0.0016;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 130291041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130291106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130291493 . A ATAC 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.4303;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130291590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130291654 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5123;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130291861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8448;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130291875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3581;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=783;AN=2184 GT:DS:GL:BD 0.35851648 0 1 130291877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130291878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0112;AVGPOST=0.9988;RSQ=0.9667;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130291949 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0009;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130291955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130291965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8224;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130291968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9246;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130291969 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0161;AVGPOST=0.9997;RSQ=0.9913;ERATE=0.0005;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130291971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0480;AVGPOST=0.9995;RSQ=0.9960;ERATE=0.0004;THETA=0.0008;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130292025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130292098 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.761;LDAF=0.0072;AVGPOST=0.9965;RSQ=0.7927;ERATE=0.0009;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130292149 rs111621681 A AT 6525 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0508;AVGPOST=0.9972;RSQ=0.9808;ERATE=0.0005;THETA=0.0008;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 130292381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4947;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130292411 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9784;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130292515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130292557 . CAG C 144 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130292586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130292620 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0080;AVGPOST=0.9979;RSQ=0.8837;ERATE=0.0007;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130292807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0101;AVGPOST=0.9991;RSQ=0.9614;ERATE=0.0003;THETA=0.0001;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130292938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130292969 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9566;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130292975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5016;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130293013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.760;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7295;ERATE=0.0009;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130293033 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6580;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130293249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0529;AVGPOST=0.9993;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 130293331 . A AT 199 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130293364 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2293;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0001;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 130293378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9988;RSQ=0.9834;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130293455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130293509 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2294;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 130293616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130294045 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130294075 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2291;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 130294091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2143;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0003;THETA=0.0017;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 130294171 . C CT 322 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8849;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130294197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130294232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0050;AVGPOST=0.9972;RSQ=0.8199;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130294329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4729;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130294369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.9224;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130294469 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.5714;AVGPOST=0.9966;RSQ=0.9952;ERATE=0.0004;THETA=0.0005;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 130294499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4662;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130294505 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9554;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130294511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8696;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130294557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0238;AVGPOST=0.9984;RSQ=0.9752;ERATE=0.0004;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130294625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5659;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130294642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9859;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130294697 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6231;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130294794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0048;AVGPOST=0.9988;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130294811 . A AC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0041;AVGPOST=0.9931;RSQ=0.3854;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130294981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8019;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130295008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8786;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130295011 rs11332466 GA G 81769 PASS INDEL;BAVGPOST=0.994;BRSQ=0.861;LDAF=0.9800;AVGPOST=0.9931;RSQ=0.8685;ERATE=0.0005;THETA=0.0002;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 130295025 . C CT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5263;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130295355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8932;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130295521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5567;AVGPOST=0.9992;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 130295637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9665;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130295715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5961;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 130295735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6152;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130295763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130295787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5974;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 130295885 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2573;AVGPOST=0.9940;RSQ=0.9896;ERATE=0.0006;THETA=0.0003;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 130295913 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0479;AVGPOST=0.9976;RSQ=0.9790;ERATE=0.0004;THETA=0.0003;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 130295925 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4058;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130296000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0055;AVGPOST=0.9932;RSQ=0.5176;ERATE=0.0009;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130296079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7654;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130296084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5359;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130296193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.5172;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130296211 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9766;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130296231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7592;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130296265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130296448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8328;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130296686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8696;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130296698 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9325;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130296723 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0030;AVGPOST=0.9966;RSQ=0.5307;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130296840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.684;LDAF=0.0041;AVGPOST=0.9964;RSQ=0.6668;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130296904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2473;AVGPOST=0.9975;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 130296942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5951;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130297025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9703;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130297026 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9795;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130297145 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130297146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7853;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130297283 . AT A 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130297371 rs112880684 A ATTTG 95461 PASS INDEL;BAVGPOST=0.991;BRSQ=0.988;LDAF=0.5884;AVGPOST=0.9865;RSQ=0.9799;ERATE=0.0023;THETA=0.0002;AC=1291;AN=2184 GT:DS:GL:BD 0.59111720 1 1 130297391 . AC A 255 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7809;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130297423 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130297477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3673;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130297552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130297566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130297879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9536;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130297890 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8148;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130297915 . TC T 2608 PASS INDEL;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0131;AVGPOST=0.9980;RSQ=0.9439;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130297954 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9625;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130297977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3215;AVGPOST=0.9977;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 130298087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.943;LDAF=0.0495;AVGPOST=0.9963;RSQ=0.9675;ERATE=0.0006;THETA=0.0003;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 130298156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0082;AVGPOST=0.9993;RSQ=0.9704;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130298215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0768;AVGPOST=0.9989;RSQ=0.9951;ERATE=0.0003;THETA=0.0007;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 130298248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0572;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130298702 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130298766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0654;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0004;THETA=0.0006;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 130298771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.9093;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130298772 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298826 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0571;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130298871 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130298903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.7999;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130298918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298925 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130298934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299162 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0645;AVGPOST=0.9982;RSQ=0.9885;ERATE=0.0003;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 130299293 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8622;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130299380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0574;AVGPOST=0.9991;RSQ=0.9946;ERATE=0.0004;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130299615 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0694;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 130299709 . AT A 440 PASS INDEL;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0056;AVGPOST=0.9966;RSQ=0.7376;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130299784 . AT A 1210 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0067;AVGPOST=0.9995;RSQ=0.9611;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130299825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5994;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130299833 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3156;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 130299877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0613;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0010;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 130299878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9190;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130299896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130299919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9900;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130300006 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3160;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0005;THETA=0.0006;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 130300074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9765;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130300243 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0572;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130300304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130300329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130300426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0125;AVGPOST=0.9966;RSQ=0.9019;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130300456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0575;AVGPOST=0.9992;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130300592 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9596;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130300599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.871;LDAF=0.0146;AVGPOST=0.9953;RSQ=0.8641;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130300614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.7085;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130300695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0582;AVGPOST=0.9981;RSQ=0.9892;ERATE=0.0004;THETA=0.0002;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 130300702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5932;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130300713 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0575;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0005;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130300753 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.568;LDAF=0.0036;AVGPOST=0.9956;RSQ=0.5063;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130300845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0014;AVGPOST=0.9978;RSQ=0.2847;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130300846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.839;LDAF=0.0888;AVGPOST=0.9571;RSQ=0.7976;ERATE=0.0012;THETA=0.0006;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 130300880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8528;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130301109 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130301144 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130301163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0572;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130301250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130301353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9897;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130301474 . AG A 12995 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0762;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 130301555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0580;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 130301615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130301632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130301645 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130301696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130301697 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8504;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130301839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0574;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130301938 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130301981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0066;AVGPOST=0.9993;RSQ=0.9524;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130301987 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0572;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0014;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130302002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5427;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130302060 rs55735332 G GTTCA 38281 PASS INDEL;BAVGPOST=0.989;BRSQ=0.968;LDAF=0.1492;AVGPOST=0.9830;RSQ=0.9522;ERATE=0.0028;THETA=0.0006;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 130302194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130302208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130302314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0572;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130302350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8387;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130302376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0436;AVGPOST=0.9991;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 130302382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130302388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0572;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130302522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9226;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130302537 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130302648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9495;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130302678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4130;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0005;THETA=0.0011;AC=901;AN=2184 GT:DS:GL:BD 0.41254580 0 1 130302689 . GA G 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130302709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0117;AVGPOST=0.9984;RSQ=0.9506;ERATE=0.0004;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130302748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6923;ERATE=0.0009;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130302779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9678;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130302815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130302821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5546;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130302828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130302937 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9415;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130302938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6244;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=1362;AN=2184 GT:DS:GL:BD 0.62362635 1 1 130302958 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130303146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4637;AVGPOST=0.9979;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1013;AN=2184 GT:DS:GL:BD 0.46382785 0 1 130303301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7456;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130303306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4455;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0006;THETA=0.0014;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 130303416 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6980;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130303494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.9040;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130303523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9517;ERATE=0.0003;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130303586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130303636 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9987;RSQ=0.9268;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130303667 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130303721 . TTTA T 212 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130303755 rs112404290 T TA 33045 PASS INDEL;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.4112;AVGPOST=0.9881;RSQ=0.9832;ERATE=0.0015;THETA=0.0002;AC=901;AN=2184 GT:DS:GL:BD 0.41254580 0 1 130303792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0167;AVGPOST=0.9981;RSQ=0.9513;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130303856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7069;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130303872 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6800;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130303958 . A AT 437 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6282;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130304059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4152;AVGPOST=0.9950;RSQ=0.9936;ERATE=0.0009;THETA=0.0007;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 130304115 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0178;AVGPOST=0.9988;RSQ=0.9746;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130304141 . AG A 169 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7437;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130304147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0080;AVGPOST=0.9987;RSQ=0.9290;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130304194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7685;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130304297 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.9635;AVGPOST=0.9959;RSQ=0.9581;ERATE=0.0004;THETA=0.0003;AC=2105;AN=2184 GT:DS:GL:BD 0.96382785 1 1 130304316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0649;AVGPOST=0.9989;RSQ=0.9913;ERATE=0.0006;THETA=0.0018;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 130304342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.883;LDAF=0.1163;AVGPOST=0.9765;RSQ=0.9266;ERATE=0.0005;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 130304366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.891;LDAF=0.3697;AVGPOST=0.9323;RSQ=0.9012;ERATE=0.0039;THETA=0.0003;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 130304386 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.830;LDAF=0.7018;AVGPOST=0.8561;RSQ=0.7634;ERATE=0.0265;THETA=0.0003;AC=1618;AN=2184 GT:DS:GL:BD 0.74084246 1 1 130304393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.948;LDAF=0.4050;AVGPOST=0.9613;RSQ=0.9448;ERATE=0.0032;THETA=0.0003;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 130304432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6775;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130304613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0134;AVGPOST=0.9982;RSQ=0.9425;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130304616 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.5597;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130304689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7068;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130304809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5270;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130304937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.3770;ERATE=0.0003;THETA=0.0032;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130304987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1444;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 130304991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305049 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7162;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305097 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5997;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130305186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305238 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0031;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130305251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8077;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130305335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5313;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6023;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130305742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0074;AVGPOST=0.9993;RSQ=0.9577;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130305757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2795;AVGPOST=0.9973;RSQ=0.9945;ERATE=0.0004;THETA=0.0002;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 130305850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6121;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130305859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130305923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9636;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130306091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9467;AVGPOST=0.9991;RSQ=0.9923;ERATE=0.0003;THETA=0.0001;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 130306114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130306187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0087;AVGPOST=0.9963;RSQ=0.8171;ERATE=0.0006;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130306461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8654;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130306548 . CT C 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4831;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130306557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130306658 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2781;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0004;THETA=0.0007;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 130306677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130306683 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9516;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130306771 . TTG T 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.6813;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130306773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0351;AVGPOST=0.9976;RSQ=0.9703;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130306785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0121;AVGPOST=0.9989;RSQ=0.9653;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130306860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130306903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130306950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0078;AVGPOST=0.9983;RSQ=0.9031;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130306986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8255;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130306988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130307053 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130307070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130307078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2778;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 130307140 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2219;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 130307220 rs11467744 CCCCAT C 1174 PASS INDEL;BAVGPOST=0.993;BRSQ=0.778;LDAF=0.0183;AVGPOST=0.9948;RSQ=0.8818;ERATE=0.0007;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130307223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9648;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130307255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130307469 . C CA 212 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0067;AVGPOST=0.9982;RSQ=0.8866;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130307573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2219;AVGPOST=0.9987;RSQ=0.9968;ERATE=0.0006;THETA=0.0002;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 130307642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9144;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130307650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0350;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0022;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130307709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130307751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130307790 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0400;AVGPOST=0.9892;RSQ=0.8902;ERATE=0.0006;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130307976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8860;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130308016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130308061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3398;AVGPOST=0.9978;RSQ=0.9964;ERATE=0.0005;THETA=0.0022;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 130308181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.903;LDAF=0.0452;AVGPOST=0.9947;RSQ=0.9521;ERATE=0.0004;THETA=0.0002;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130308274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.7954;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130308289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130308348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9454;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130308373 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0422;AVGPOST=0.9996;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130308424 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0086;AVGPOST=0.9971;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130308523 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.921;LDAF=0.0648;AVGPOST=0.9964;RSQ=0.9766;ERATE=0.0004;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 130308547 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130308563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3399;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 130308564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5604;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130308597 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5266;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130308610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130308756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130308766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5416;AVGPOST=0.9977;RSQ=0.9969;ERATE=0.0004;THETA=0.0008;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 130308996 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130308997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0400;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0004;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130309011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0398;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0039;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130309039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9259;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130309225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5948;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8852;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130309231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3387;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 130309277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1443;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 130309393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3393;AVGPOST=0.9983;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 130309397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0401;AVGPOST=0.9992;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130309519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309585 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130309819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309906 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7396;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130309949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9452;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130309962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8796;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130309970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130309994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8760;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130310116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4815;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9365;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130310223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310246 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0397;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130310279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7359;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130310289 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0159;AVGPOST=0.9983;RSQ=0.9614;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130310435 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0161;AVGPOST=0.9989;RSQ=0.9753;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130310456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0326;AVGPOST=0.9990;RSQ=0.9888;ERATE=0.0003;THETA=0.0012;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130310544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310665 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6128;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130310786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130310961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0315;AVGPOST=0.9978;RSQ=0.9763;ERATE=0.0004;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130310984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.9937;AVGPOST=0.9991;RSQ=0.9479;ERATE=0.0004;THETA=0.0011;AC=2171;AN=2184 GT:DS:GL:BD 0.99404764 1 1 130311003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130311017 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130311198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130311332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9785;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=2137;AN=2184 GT:DS:GL:BD 0.97847986 1 1 130311422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0403;AVGPOST=0.9988;RSQ=0.9899;ERATE=0.0003;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130311537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130311659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7196;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130312125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130312264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0329;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130312359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130312393 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6236;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130312441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130312525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7131;ERATE=0.0002;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130312546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130312585 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0002;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130312712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9711;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130312721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130312755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4908;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130312903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0054;AVGPOST=0.9974;RSQ=0.8190;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130312904 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2201;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 130312971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9594;ERATE=0.0002;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130313030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8475;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0005;THETA=0.0003;AC=1853;AN=2184 GT:DS:GL:BD 0.84844321 1 1 130313233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.8989;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130313477 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8550;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130313500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1362;AVGPOST=0.9952;RSQ=0.9882;ERATE=0.0005;THETA=0.0013;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 130313520 . C CA 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7401;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130313749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0039;AVGPOST=0.9955;RSQ=0.5767;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130313885 . A AC 110 PASS INDEL;BAVGPOST=0.984;BRSQ=0.462;LDAF=0.0399;AVGPOST=0.9445;RSQ=0.4502;ERATE=0.0043;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130313947 . CA C 13 PASS INDEL;BAVGPOST=0.987;BRSQ=0.462;LDAF=0.0119;AVGPOST=0.9896;RSQ=0.6519;ERATE=0.0014;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130313973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7892;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130314051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6119;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130314236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9616;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130314276 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0998;AVGPOST=0.9982;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 130314326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0803;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0002;THETA=0.0003;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 130314426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8575;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130314503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0520;AVGPOST=0.9975;RSQ=0.9781;ERATE=0.0005;THETA=0.0004;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 130314637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6917;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130314704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.9020;ERATE=0.0002;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130314734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0211;AVGPOST=0.9984;RSQ=0.9706;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130314740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.6860;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130314768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.3319;AVGPOST=0.9907;RSQ=0.9845;ERATE=0.0013;THETA=0.0003;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 130314909 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130314980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.1828;AVGPOST=0.9932;RSQ=0.9830;ERATE=0.0006;THETA=0.0004;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 130315167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0767;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0002;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130315176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6106;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130315220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0051;AVGPOST=0.9971;RSQ=0.7587;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130315305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130315479 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6799;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130315613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0060;AVGPOST=0.9974;RSQ=0.8517;ERATE=0.0002;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130315973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8252;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130316060 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7833;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130316101 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0089;AVGPOST=0.9991;RSQ=0.9605;ERATE=0.0002;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130316302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6567;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130316326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8370;ERATE=0.0002;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130316342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0591;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0002;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 130316479 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8524;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=1862;AN=2184 GT:DS:GL:BD 0.85256410 1 1 130316535 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4074;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130316558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6238;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130316565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130316589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130316658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3794;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130316769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8478;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0005;THETA=0.0002;AC=1852;AN=2184 GT:DS:GL:BD 0.84798533 1 1 130316969 . TAAG T 1205 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130317004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.863;LDAF=0.0136;AVGPOST=0.9983;RSQ=0.9471;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130317073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2270;AVGPOST=0.9959;RSQ=0.9923;ERATE=0.0004;THETA=0.0003;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 130317108 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2197;AVGPOST=0.9981;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 130317185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4725;AVGPOST=0.9991;RSQ=0.9987;ERATE=0.0002;THETA=0.0002;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 130317222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1012;AVGPOST=0.9981;RSQ=0.9915;ERATE=0.0005;THETA=0.0011;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130317236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.984;LDAF=0.5628;AVGPOST=0.9835;RSQ=0.9798;ERATE=0.0031;THETA=0.0003;AC=1232;AN=2184 GT:DS:GL:BD 0.56410259 1 1 130317295 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6868;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130317362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0999;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0003;THETA=0.0034;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 130317428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0134;AVGPOST=0.9990;RSQ=0.9756;ERATE=0.0002;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130317459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7239;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130317501 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2321;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 130317526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4201;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130317568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.739;LDAF=0.0200;AVGPOST=0.9911;RSQ=0.8427;ERATE=0.0004;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130317591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9994;RSQ=0.9383;ERATE=0.0002;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130317592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9619;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130317638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.874;LDAF=0.0641;AVGPOST=0.9936;RSQ=0.9577;ERATE=0.0004;THETA=0.0006;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 130317693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1385;AVGPOST=0.9952;RSQ=0.9840;ERATE=0.0006;THETA=0.0004;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 130317753 . A AATC 184 PASS INDEL;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0053;AVGPOST=0.9958;RSQ=0.7222;ERATE=0.0012;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130317910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6860;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130317934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7953;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130317962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130318073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6409;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130318113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8429;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130318191 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6586;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130318212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9583;ERATE=0.0002;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130318267 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9583;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130318273 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1069;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 130318421 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130318452 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130318651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.910;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9753;ERATE=0.0002;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130319087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.4095;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130319104 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7017;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130319137 . TA T 26 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6106;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130319169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6398;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130319171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130319470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1045;AVGPOST=0.9984;RSQ=0.9921;ERATE=0.0004;THETA=0.0002;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 130319472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6732;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130319526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130319826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0393;AVGPOST=0.9991;RSQ=0.9885;ERATE=0.0004;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130319933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.717;LDAF=0.0072;AVGPOST=0.9966;RSQ=0.8048;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130319977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9659;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130320010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0160;AVGPOST=0.9982;RSQ=0.9571;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130320255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0047;AVGPOST=0.9958;RSQ=0.6736;ERATE=0.0011;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130320276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130320293 rs113191160 ATAAG A 39699 PASS INDEL;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.4903;AVGPOST=0.9762;RSQ=0.9687;ERATE=0.0028;THETA=0.0005;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 130320328 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4515;AVGPOST=0.9852;RSQ=0.9795;ERATE=0.0027;THETA=0.0004;AC=983;AN=2184 GT:DS:GL:BD 0.45009157 0 1 130320412 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0085;AVGPOST=0.9976;RSQ=0.8987;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130320463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6943;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130320483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130320525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130320546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5956;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130320590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6573;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130320623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7102;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130320651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8880;ERATE=0.0002;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130320725 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7537;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130320729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8192;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130320782 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8811;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130320825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0191;AVGPOST=0.9970;RSQ=0.9467;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130320906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5213;AVGPOST=0.9983;RSQ=0.9974;ERATE=0.0004;THETA=0.0037;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 130321031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0060;AVGPOST=0.9940;RSQ=0.5822;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130321093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0111;AVGPOST=0.9976;RSQ=0.8992;ERATE=0.0008;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130321144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.814;LDAF=0.0358;AVGPOST=0.9927;RSQ=0.9115;ERATE=0.0009;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130321196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6129;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130321532 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4908;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 130321645 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8744;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130321663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5341;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130321667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8516;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130321735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130321842 . AT A 2811 PASS INDEL;BAVGPOST=0.990;BRSQ=0.781;LDAF=0.0212;AVGPOST=0.9918;RSQ=0.8582;ERATE=0.0005;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130321845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9991;RSQ=0.9602;ERATE=0.0002;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130322076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8112;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130322163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5105;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 130322224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1025;AVGPOST=0.9994;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130322226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8320;ERATE=0.0003;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130322322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130322339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130322409 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7011;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130322419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6404;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130322514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130322896 . A AG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6027;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130322928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.858;LDAF=0.1105;AVGPOST=0.9904;RSQ=0.9667;ERATE=0.0004;THETA=0.0003;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 130322969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6175;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130322993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1394;AVGPOST=0.9973;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 130323030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4684;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130323156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6262;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130323174 . A AT 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5882;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130323363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130323365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5580;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130323407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5697;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130323504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130323614 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9124;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130323741 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0204;AVGPOST=0.9990;RSQ=0.9807;ERATE=0.0002;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130323873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3018;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0003;THETA=0.0006;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 130323915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6722;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130323952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1384;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 130324047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9440;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130324049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9048;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130324174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130324208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7568;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130324224 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9803;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130324337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130324357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9506;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130324363 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5260;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130324381 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9663;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130324457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1964;AVGPOST=0.9978;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 130324488 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0223;AVGPOST=0.9979;RSQ=0.9636;ERATE=0.0003;THETA=0.0030;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130324573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0077;AVGPOST=0.9957;RSQ=0.7718;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130324581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5273;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130324966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0068;AVGPOST=0.9982;RSQ=0.9047;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130325018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.908;LDAF=0.0418;AVGPOST=0.9979;RSQ=0.9796;ERATE=0.0004;THETA=0.0007;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130325048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8661;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130325054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130325145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7922;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130325277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0234;AVGPOST=0.9995;RSQ=0.9924;ERATE=0.0003;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130325443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.930;LDAF=0.4785;AVGPOST=0.9328;RSQ=0.9021;ERATE=0.0084;THETA=0.0003;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 130325539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4083;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130325566 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3712;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130325663 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.848;LDAF=0.3913;AVGPOST=0.8754;RSQ=0.8058;ERATE=0.0328;THETA=0.0003;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 130325765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4659;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130325928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130326082 rs71137739 TC T 3081 PASS INDEL;BAVGPOST=0.994;BRSQ=0.846;LDAF=0.0219;AVGPOST=0.9937;RSQ=0.8866;ERATE=0.0004;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130326102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8369;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130326113 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1154;AVGPOST=0.9930;RSQ=0.9789;ERATE=0.0019;THETA=0.0003;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 130326229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.9883;AVGPOST=0.9989;RSQ=0.9580;ERATE=0.0002;THETA=0.0005;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 130326272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4963;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0007;THETA=0.0004;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 130326366 . T TC 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7644;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130326443 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5703;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130326579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.8236;AVGPOST=0.9916;RSQ=0.9755;ERATE=0.0015;THETA=0.0003;AC=1799;AN=2184 GT:DS:GL:BD 0.82371795 1 1 130326604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130326741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6997;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130326811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.0846;AVGPOST=0.9963;RSQ=0.9861;ERATE=0.0006;THETA=0.0008;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 130326860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5522;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130326922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0002;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130327004 . GGA G 2275 PASS INDEL;BAVGPOST=0.930;BRSQ=0.829;LDAF=0.2412;AVGPOST=0.9435;RSQ=0.8926;ERATE=0.0006;THETA=0.0004;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 130327084 rs72249697 GAGA G 25118 PASS INDEL;BAVGPOST=0.966;BRSQ=0.925;LDAF=0.2877;AVGPOST=0.9768;RSQ=0.9601;ERATE=0.0011;THETA=0.0005;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 130327085 rs71579041 AG A 173 PASS INDEL;BAVGPOST=0.902;BRSQ=0.747;LDAF=0.2416;AVGPOST=0.9428;RSQ=0.8919;ERATE=0.0006;THETA=0.0004;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 130327089 rs71579041 A AG 12387 PASS INDEL;BAVGPOST=0.985;BRSQ=0.957;LDAF=0.2060;AVGPOST=0.9770;RSQ=0.9495;ERATE=0.0032;THETA=0.0006;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 130327096 . G GT 412 PASS INDEL;BAVGPOST=0.919;BRSQ=0.554;LDAF=0.0670;AVGPOST=0.9425;RSQ=0.6763;ERATE=0.0003;THETA=0.0009;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 130327098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7085;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130327111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.693;LDAF=0.0054;AVGPOST=0.9968;RSQ=0.7511;ERATE=0.0004;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130327253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1955;AVGPOST=0.9945;RSQ=0.9876;ERATE=0.0009;THETA=0.0006;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 130327273 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5087;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130327322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.530;LDAF=0.0251;AVGPOST=0.9635;RSQ=0.4134;ERATE=0.0059;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130327471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7990;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130327729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0063;AVGPOST=0.9988;RSQ=0.9292;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130327756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130327829 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0315;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130327835 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0275;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130327937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130327992 . AG A 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328003 . ATTAAC A 327 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6581;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130328013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6027;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130328060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0671;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0004;THETA=0.0003;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 130328127 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3674;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 130328136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8863;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130328151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9398;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130328192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4550;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0002;AC=995;AN=2184 GT:DS:GL:BD 0.45558608 0 1 130328196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0043;AVGPOST=0.9993;RSQ=0.9241;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130328205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130328206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0589;AVGPOST=0.9990;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130328289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328367 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3674;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 130328403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328470 . AAT A 181 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130328678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0315;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130328699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6035;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130328716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0668;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 130328766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130328782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130328825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8485;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130328985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130328993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130329022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7136;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130329048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130329111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3359;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0009;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 130329160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130329176 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0608;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0031;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 130329317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130329325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0328;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130329393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0040;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130329396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0316;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130329496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130329699 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0316;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130329727 rs71165917 TG T 9787 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0612;AVGPOST=0.9987;RSQ=0.9912;ERATE=0.0004;THETA=0.0004;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 130329806 . T TACA 362 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130330004 . CTG C 991 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9990;RSQ=0.9316;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130330045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0316;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130330079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0673;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130330125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.8823;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130330313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0316;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0003;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130330388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130330400 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0326;AVGPOST=0.9978;RSQ=0.9761;ERATE=0.0004;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130330408 . TAG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4728;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130330455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130330495 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130330538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.9103;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130330626 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0097;AVGPOST=0.9987;RSQ=0.9481;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130330677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130330726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130330773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6386;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130330830 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130330838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130330888 . ACTGT A 14461 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0751;AVGPOST=0.9989;RSQ=0.9938;ERATE=0.0004;THETA=0.0006;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 130331010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0634;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 130331140 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130331176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8920;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130331178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1063;AVGPOST=0.9985;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 130331225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130331258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6031;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130331278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1101;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 130331371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6744;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130331401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0317;AVGPOST=0.9994;RSQ=0.9921;ERATE=0.0004;THETA=0.0011;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130331423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6910;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130331491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7106;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130331523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8739;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130331567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130331585 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130331601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0054;AVGPOST=0.9983;RSQ=0.8884;ERATE=0.0003;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130331666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9324;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130331745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4585;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=1002;AN=2184 GT:DS:GL:BD 0.45879120 0 1 130331749 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0750;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 130331906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9379;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130331932 . AT A 4046 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0335;AVGPOST=0.9974;RSQ=0.9725;ERATE=0.0005;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130331942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8384;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130331970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130332025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0434;AVGPOST=0.9994;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 130332052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.631;LDAF=0.0072;AVGPOST=0.9904;RSQ=0.4813;ERATE=0.0018;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130332147 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8075;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130332211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0315;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130332227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0319;AVGPOST=0.9993;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 130332414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8362;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130332520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130332666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0632;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0020;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 130332696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130332716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9483;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130332793 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5851;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130332981 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9752;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130333030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0716;AVGPOST=0.9975;RSQ=0.9850;ERATE=0.0003;THETA=0.0007;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 130333285 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0002;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130333345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4070;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333349 . AT A 94 PASS INDEL;BAVGPOST=0.997;BRSQ=0.691;LDAF=0.0051;AVGPOST=0.9972;RSQ=0.7821;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130333411 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0145;AVGPOST=0.9949;RSQ=0.8577;ERATE=0.0006;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130333412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5064;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333451 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.968;LDAF=0.0705;AVGPOST=0.9964;RSQ=0.9811;ERATE=0.0002;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130333461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130333586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0237;AVGPOST=0.9989;RSQ=0.9795;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130333672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0080;AVGPOST=0.9980;RSQ=0.9040;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130333673 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.8379;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130333713 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0327;AVGPOST=0.9974;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130333715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.3937;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130333718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0042;AVGPOST=0.9981;RSQ=0.8059;ERATE=0.0005;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130333732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.8072;AVGPOST=0.9980;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=1763;AN=2184 GT:DS:GL:BD 0.80723441 1 1 130333772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4816;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130334015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.497;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5927;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130334094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.8784;AVGPOST=0.9965;RSQ=0.9868;ERATE=0.0004;THETA=0.0003;AC=1919;AN=2184 GT:DS:GL:BD 0.87866300 1 1 130334228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130334286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7735;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130334288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.7138;AVGPOST=0.9932;RSQ=0.9867;ERATE=0.0008;THETA=0.0018;AC=1559;AN=2184 GT:DS:GL:BD 0.71382785 1 1 130334308 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.935;LDAF=0.0407;AVGPOST=0.9883;RSQ=0.8931;ERATE=0.0004;THETA=0.0073;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130334330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8397;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130334519 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130334571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9981;RSQ=0.8710;ERATE=0.0002;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130334642 . G GA 140 PASS INDEL;BAVGPOST=0.985;BRSQ=0.498;LDAF=0.0276;AVGPOST=0.9645;RSQ=0.4935;ERATE=0.0083;THETA=0.0012;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130334654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7056;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130334672 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0252;AVGPOST=0.9994;RSQ=0.9884;ERATE=0.0003;THETA=0.0063;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130334689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.979;LDAF=0.4261;AVGPOST=0.9849;RSQ=0.9791;ERATE=0.0012;THETA=0.0088;AC=931;AN=2184 GT:DS:GL:BD 0.42628205 0 1 130334734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130334757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0340;AVGPOST=0.9995;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130334758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5922;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130334798 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0342;AVGPOST=0.9992;RSQ=0.9900;ERATE=0.0002;THETA=0.0011;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130334852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.8078;ERATE=0.0003;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130334856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130334867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.8923;AVGPOST=0.9914;RSQ=0.9655;ERATE=0.0018;THETA=0.0031;AC=1949;AN=2184 GT:DS:GL:BD 0.89239925 1 1 130334954 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8924;ERATE=0.0004;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130334998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.953;LDAF=0.0390;AVGPOST=0.9964;RSQ=0.9644;ERATE=0.0008;THETA=0.0082;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130335033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.968;LDAF=0.1685;AVGPOST=0.9863;RSQ=0.9608;ERATE=0.0087;THETA=0.0190;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 130335065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0443;AVGPOST=0.9952;RSQ=0.9582;ERATE=0.0004;THETA=0.0059;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130335090 . TA T 321 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.0599;ERATE=0.0004;THETA=0.0018;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130335174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.961;LDAF=0.8073;AVGPOST=0.9861;RSQ=0.9663;ERATE=0.0012;THETA=0.0090;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 130335176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.959;LDAF=0.8207;AVGPOST=0.9883;RSQ=0.9689;ERATE=0.0010;THETA=0.0165;AC=1796;AN=2184 GT:DS:GL:BD 0.82234430 1 1 130335235 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0002;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130335303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6750;ERATE=0.0002;THETA=0.0125;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130335461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7290;AVGPOST=0.9945;RSQ=0.9885;ERATE=0.0004;THETA=0.0024;AC=1593;AN=2184 GT:DS:GL:BD 0.72939563 1 1 130335774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9562;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130335882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130335970 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0054;AVGPOST=0.9970;RSQ=0.7937;ERATE=0.0003;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130336435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4359;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130336517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0294;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130336543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0133;AVGPOST=0.9991;RSQ=0.9693;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130336590 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6535;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130336595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130336639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.931;LDAF=0.0469;AVGPOST=0.9925;RSQ=0.9344;ERATE=0.0004;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130336792 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7462;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130336933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2392;AVGPOST=0.9976;RSQ=0.9950;ERATE=0.0003;THETA=0.0002;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 130337004 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0662;AVGPOST=0.9983;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 130337053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130337072 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0668;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0002;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 130337073 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7237;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130337088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1266;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 130337156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130337249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130337356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130337463 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1259;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 130337477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130337487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0601;AVGPOST=0.9993;RSQ=0.9944;ERATE=0.0002;THETA=0.0003;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 130337592 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.8454;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130337736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4960;AVGPOST=0.9963;RSQ=0.9943;ERATE=0.0009;THETA=0.0012;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 130337761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8499;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130337865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130337992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338087 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9930;ERATE=0.0004;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130338140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0179;AVGPOST=0.9973;RSQ=0.9428;ERATE=0.0004;THETA=0.0019;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130338289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8340;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130338383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9927;ERATE=0.0003;THETA=0.0016;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130338391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9993;RSQ=0.9695;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130338431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6837;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338452 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9640;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130338467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130338511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4570;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338543 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338597 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4552;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338681 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130338700 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130338721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130339006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130339044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0144;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0013;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130339103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8859;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339353 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9338;ERATE=0.0003;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130339392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9717;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130339448 . A AT 351 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8499;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130339535 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4768;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130339541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130339619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0162;AVGPOST=0.9957;RSQ=0.9003;ERATE=0.0012;THETA=0.0014;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130339620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0017;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130339649 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9436;ERATE=0.0004;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9406;ERATE=0.0003;THETA=0.0041;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339885 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0043;AVGPOST=0.9952;RSQ=0.6140;ERATE=0.0006;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130339903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4156;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130339926 . TA T 68 PASS INDEL;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5165;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130339927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9037;ERATE=0.0003;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130339951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130339978 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8363;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130339980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340014 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9996;RSQ=0.9900;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130340058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8210;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130340371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4997;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340372 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0158;AVGPOST=0.9990;RSQ=0.9677;ERATE=0.0004;THETA=0.0015;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130340573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7872;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340602 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130340687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.848;LDAF=0.0363;AVGPOST=0.9893;RSQ=0.8844;ERATE=0.0008;THETA=0.0013;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130340743 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130340900 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9448;ERATE=0.0003;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130340925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8820;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130341113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.7981;ERATE=0.0005;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130341125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5993;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341131 . TTCAACCAC T 223 PASS INDEL;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.6000;ERATE=0.0006;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130341142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7487;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130341164 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341199 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341412 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130341478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9946;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130341624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9164;ERATE=0.0003;THETA=0.0028;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130341746 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130341766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6324;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130341807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130341928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130342124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9799;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130342154 . AG A 188 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130342166 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130342183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9180;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130342319 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0116;AVGPOST=0.9994;RSQ=0.9761;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130342410 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130342444 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.6352;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130342465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0507;AVGPOST=0.9947;RSQ=0.9604;ERATE=0.0005;THETA=0.0011;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130342602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0127;AVGPOST=0.9972;RSQ=0.9125;ERATE=0.0003;THETA=0.0021;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130342616 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7255;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130342647 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130342694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8838;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130342780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130342814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130342833 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9358;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130342848 . CTT C 42 PASS INDEL;BAVGPOST=0.989;BRSQ=0.345;LDAF=0.0184;AVGPOST=0.9682;RSQ=0.2806;ERATE=0.0044;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130343024 . ATATG A 23413 PASS INDEL;BAVGPOST=0.808;BRSQ=0.641;LDAF=0.4990;AVGPOST=0.7645;RSQ=0.6068;ERATE=0.0950;THETA=0.0004;AC=1049;AN=2184 GT:DS:GL:BD 0.48031136 0 1 130343042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0030;AVGPOST=0.9963;RSQ=0.4692;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130343069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.4202;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130343079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9612;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130343133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6340;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130343160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.697;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7775;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130343163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.805;LDAF=0.0113;AVGPOST=0.9939;RSQ=0.7939;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130343191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2806;AVGPOST=0.9927;RSQ=0.9857;ERATE=0.0021;THETA=0.0005;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 130343231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7368;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130343396 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0130;AVGPOST=0.9986;RSQ=0.9631;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130343440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130343624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1619;AVGPOST=0.9975;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 130343659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2785;AVGPOST=0.9976;RSQ=0.9954;ERATE=0.0006;THETA=0.0002;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 130343680 rs55675032 CAATT C 35277 PASS INDEL;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2790;AVGPOST=0.9974;RSQ=0.9947;ERATE=0.0007;THETA=0.0005;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 130343715 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130343758 . A AG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4194;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130343854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130343908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7008;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130343954 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2795;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 130343971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130344079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5440;AVGPOST=0.9976;RSQ=0.9964;ERATE=0.0005;THETA=0.0008;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 130344128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9156;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130344211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7142;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130344227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4778;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130344233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0127;AVGPOST=0.9981;RSQ=0.9430;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130344234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9370;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130344235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2801;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0010;THETA=0.0004;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 130344243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9730;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130344319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130344364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130344539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6508;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130344565 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9195;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130344577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130344658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7878;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130344756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130344803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130344809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4084;AVGPOST=0.9964;RSQ=0.9936;ERATE=0.0008;THETA=0.0001;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 130344963 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130345096 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130345135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2789;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0006;THETA=0.0003;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 130345201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5433;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0006;THETA=0.0003;AC=1188;AN=2184 GT:DS:GL:BD 0.54395604 1 1 130345248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0784;AVGPOST=0.9988;RSQ=0.9935;ERATE=0.0004;THETA=0.0002;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 130345250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2778;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 130345260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8963;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130345486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2780;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 130345495 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.5023;AVGPOST=0.9950;RSQ=0.9922;ERATE=0.0010;THETA=0.0006;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 130345723 . TAGAGA T 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7353;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130345733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8546;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130345995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0120;AVGPOST=0.9974;RSQ=0.9185;ERATE=0.0006;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130346142 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8482;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130346185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130346199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8361;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130346205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9733;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130346206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0752;AVGPOST=0.9989;RSQ=0.9939;ERATE=0.0004;THETA=0.0002;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 130346256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9992;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130346335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6609;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130346350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130346439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130346456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6819;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130346560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130346577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9990;RSQ=0.9655;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130346588 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6644;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130346648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6549;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130346730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0120;AVGPOST=0.9988;RSQ=0.9595;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130346769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7948;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130346812 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130346825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7432;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130346850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0446;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 130346889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6828;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130346894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1610;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 130347088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9474;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130347150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130347190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4948;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130347239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130347314 . TCA T 977 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9573;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130347402 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9996;RSQ=0.9816;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130347480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9528;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130347518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0749;AVGPOST=0.9977;RSQ=0.9877;ERATE=0.0005;THETA=0.0002;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 130347600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7327;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130347732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4793;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130347745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.919;LDAF=0.0820;AVGPOST=0.9872;RSQ=0.9449;ERATE=0.0004;THETA=0.0004;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 130347756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7842;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130347798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6049;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130347835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0071;AVGPOST=0.9965;RSQ=0.7917;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130347839 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.6727;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130347945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1302;AVGPOST=0.9973;RSQ=0.9906;ERATE=0.0005;THETA=0.0005;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 130347991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0091;AVGPOST=0.9990;RSQ=0.9493;ERATE=0.0006;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130348005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130348120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130348164 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5766;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130348201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130348306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0116;AVGPOST=0.9924;RSQ=0.8077;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130348313 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9982;RSQ=0.9148;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130348372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.778;LDAF=0.0134;AVGPOST=0.9930;RSQ=0.8004;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130348427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9188;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130348528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1175;AVGPOST=0.9987;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 130348652 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8836;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130348667 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130348703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8610;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130348707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.0527;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 130348854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2011;AVGPOST=0.9985;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 130348958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9103;ERATE=0.0003;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130349058 . C CAAAAT 2456 PASS INDEL;BAVGPOST=0.991;BRSQ=0.850;LDAF=0.0222;AVGPOST=0.9925;RSQ=0.8683;ERATE=0.0004;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130349127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8923;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130349170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7153;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130349204 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9703;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130349215 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130349246 . CA C 503 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9117;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130349464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130349508 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6341;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130349512 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9990;RSQ=0.1537;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 130349932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9461;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130350134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130350274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8429;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130350481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9176;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130350522 . GC G 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4748;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130350588 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.982;LDAF=0.4872;AVGPOST=0.9933;RSQ=0.9914;ERATE=0.0006;THETA=0.0004;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 130350852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.5213;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130350916 . TA T 682 PASS INDEL;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0160;AVGPOST=0.9981;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130351026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130351061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9393;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130351216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4903;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 130351234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130351357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130351399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4839;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130351424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9977;RSQ=0.8785;ERATE=0.0003;THETA=0.0019;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130351440 . TG T 17 PASS INDEL;BAVGPOST=0.998;BRSQ=0.571;LDAF=0.0051;AVGPOST=0.9955;RSQ=0.6697;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130351475 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9558;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130351476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1564;AVGPOST=0.9976;RSQ=0.9934;ERATE=0.0004;THETA=0.0005;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 130351618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9612;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130351671 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9231;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130351708 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130351897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6428;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130351938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130351951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1170;AVGPOST=0.9984;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 130352050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6321;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130352189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130352586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130352642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4127;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130352707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9068;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130352742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130352899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9207;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130352928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4898;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1070;AN=2184 GT:DS:GL:BD 0.48992673 0 1 130353035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.5966;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130353163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6391;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130353171 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.942;LDAF=0.3514;AVGPOST=0.9904;RSQ=0.9838;ERATE=0.0006;THETA=0.0003;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 130353175 rs113153180 C CA 22601 PASS INDEL;BAVGPOST=0.979;BRSQ=0.957;LDAF=0.3510;AVGPOST=0.9864;RSQ=0.9769;ERATE=0.0016;THETA=0.0004;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 130353186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9663;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130353373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0601;AVGPOST=0.9986;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 130353568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8280;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130353593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130353673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130353674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3559;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130353740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8518;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130353763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8235;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130353767 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130353835 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3002;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 130353886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0564;AVGPOST=0.9996;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130353999 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3844;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0004;THETA=0.0003;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 130354034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0292;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130354112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4151;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0005;THETA=0.0001;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 130354178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7524;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130354229 rs11403176 G GT 19104 PASS INDEL;BAVGPOST=0.965;BRSQ=0.928;LDAF=0.3130;AVGPOST=0.9234;RSQ=0.8752;ERATE=0.0219;THETA=0.0002;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 130354263 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0596;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 130354265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4453;AVGPOST=0.9941;RSQ=0.9902;ERATE=0.0010;THETA=0.0006;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 130354310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7478;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130354325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0679;AVGPOST=0.9991;RSQ=0.9935;ERATE=0.0003;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 130354328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.972;LDAF=0.3576;AVGPOST=0.9957;RSQ=0.9924;ERATE=0.0008;THETA=0.0003;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130354365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0397;AVGPOST=0.9974;RSQ=0.9692;ERATE=0.0004;THETA=0.0002;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130354367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.856;LDAF=0.0368;AVGPOST=0.9814;RSQ=0.8088;ERATE=0.0010;THETA=0.0002;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130354373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0298;AVGPOST=0.9983;RSQ=0.9743;ERATE=0.0004;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130354440 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2987;AVGPOST=0.9966;RSQ=0.9943;ERATE=0.0005;THETA=0.0003;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 130354447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.973;LDAF=0.4371;AVGPOST=0.9858;RSQ=0.9765;ERATE=0.0021;THETA=0.0003;AC=956;AN=2184 GT:DS:GL:BD 0.43772894 0 1 130354500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.941;LDAF=0.0572;AVGPOST=0.9984;RSQ=0.9868;ERATE=0.0004;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 130354508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9394;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130354525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3855;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0007;THETA=0.0006;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 130354569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.771;LDAF=0.0098;AVGPOST=0.9965;RSQ=0.8653;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130354570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3560;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0004;THETA=0.0003;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130354601 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0001;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130354850 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0360;AVGPOST=0.9952;RSQ=0.9502;ERATE=0.0004;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130354916 rs11368932 A AT 3039 PASS INDEL;BAVGPOST=0.987;BRSQ=0.838;LDAF=0.0495;AVGPOST=0.9653;RSQ=0.7370;ERATE=0.0065;THETA=0.0002;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130354961 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4430;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=965;AN=2184 GT:DS:GL:BD 0.44184983 0 1 130354963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130354984 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5050;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 130354996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3559;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3559;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0005;THETA=0.0004;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355107 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130355190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130355250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130355251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130355275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3568;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130355410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3560;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5361;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130355459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0619;AVGPOST=0.9984;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 130355463 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3549;AVGPOST=0.9968;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 130355479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3565;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0006;THETA=0.0003;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8040;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130355644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3558;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0003;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355669 rs113379853 AAAT A 39932 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3552;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0005;THETA=0.0002;AC=773;AN=2184 GT:DS:GL:BD 0.35393772 0 1 130355721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9205;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130355860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130355864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3562;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0006;THETA=0.0002;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130355880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0131;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130356069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130356162 rs59815271 CTGTT C 34768 PASS INDEL;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3506;AVGPOST=0.9905;RSQ=0.9838;ERATE=0.0010;THETA=0.0003;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 130356248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130356275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9688;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130356451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130356456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0065;AVGPOST=0.9990;RSQ=0.9465;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130356537 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6864;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130356557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5421;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130356645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3566;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130356671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3573;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130356817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0607;AVGPOST=0.9986;RSQ=0.9899;ERATE=0.0004;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 130356837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3564;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130357039 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5536;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130357150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8814;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130357195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7053;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130357271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3569;AVGPOST=0.9960;RSQ=0.9932;ERATE=0.0007;THETA=0.0010;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 130357277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130357306 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130357318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0614;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 130357407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5980;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130357421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130357432 . GT G 206 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8541;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130357432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3582;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 130357504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0393;AVGPOST=0.9986;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130357582 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6754;ERATE=0.0004;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130357591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0200;AVGPOST=0.9986;RSQ=0.9721;ERATE=0.0004;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130357654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130357665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7862;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130357668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0022;AVGPOST=0.9997;RSQ=0.9456;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130357728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1466;AVGPOST=0.9980;RSQ=0.9932;ERATE=0.0005;THETA=0.0004;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 130357806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3579;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 130357858 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0027;AVGPOST=0.9970;RSQ=0.5331;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130358037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.950;LDAF=0.5667;AVGPOST=0.9806;RSQ=0.9698;ERATE=0.0014;THETA=0.0003;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 130358071 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.760;LDAF=0.0055;AVGPOST=0.9967;RSQ=0.7667;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130358093 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9979;RSQ=0.9451;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130358374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9620;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130358402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0655;AVGPOST=0.9977;RSQ=0.9883;ERATE=0.0004;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 130358403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.935;LDAF=0.8039;AVGPOST=0.9761;RSQ=0.9506;ERATE=0.0019;THETA=0.0018;AC=1765;AN=2184 GT:DS:GL:BD 0.80815017 1 1 130358448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130358477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.944;LDAF=0.8841;AVGPOST=0.9844;RSQ=0.9504;ERATE=0.0017;THETA=0.0004;AC=1941;AN=2184 GT:DS:GL:BD 0.88873625 1 1 130358533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.582;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.5783;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130358558 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0308;AVGPOST=0.9987;RSQ=0.9813;ERATE=0.0004;THETA=0.0031;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130358585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.5701;AVGPOST=0.9854;RSQ=0.9783;ERATE=0.0006;THETA=0.0004;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 130358588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.969;LDAF=0.5390;AVGPOST=0.9652;RSQ=0.9483;ERATE=0.0032;THETA=0.0006;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 130358674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8534;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130358691 rs67260421 TTTTG T 94748 PASS INDEL;BAVGPOST=0.996;BRSQ=0.750;LDAF=0.9865;AVGPOST=0.9865;RSQ=0.5996;ERATE=0.0024;THETA=0.0006;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 130358842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9367;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130358943 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130358948 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5632;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130358971 . TG T 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9092;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130358971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130358972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130359032 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130359098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130359114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130359300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130359306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7875;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130359371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130359449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8202;AVGPOST=0.9971;RSQ=0.9935;ERATE=0.0003;THETA=0.0003;AC=1793;AN=2184 GT:DS:GL:BD 0.82097071 1 1 130359492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0678;AVGPOST=0.9994;RSQ=0.9955;ERATE=0.0003;THETA=0.0007;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 130359513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130359514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130359554 . A AG 191 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130359575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130359623 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8060;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130359633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8207;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0029;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 130359676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.723;LDAF=0.0072;AVGPOST=0.9959;RSQ=0.7666;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130359768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7233;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130360051 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0686;AVGPOST=0.9981;RSQ=0.9898;ERATE=0.0004;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 130360062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130360255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8016;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130360272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9050;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130360408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130360460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7885;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130360608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130360746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7852;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130360920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.7050;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130360956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130361086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130361133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130361181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130361238 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9679;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 130361394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0402;AVGPOST=0.9980;RSQ=0.9788;ERATE=0.0004;THETA=0.0002;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130361554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5786;AVGPOST=0.9966;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=1267;AN=2184 GT:DS:GL:BD 0.58012819 1 1 130361670 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4740;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130361698 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130361700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.796;LDAF=0.0804;AVGPOST=0.9761;RSQ=0.8863;ERATE=0.0007;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130361715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.5793;AVGPOST=0.9960;RSQ=0.9933;ERATE=0.0007;THETA=0.0004;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 130361720 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6188;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130361757 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9118;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130361808 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0325;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0003;THETA=0.0002;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130362021 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130362106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130362119 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130362240 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7634;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130362379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5804;AVGPOST=0.9978;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 130362394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130362538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130362592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0003;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130362632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130362692 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130362771 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1661;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 130362859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130362925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130363060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6735;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130363186 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.4495;AVGPOST=0.9947;RSQ=0.9918;ERATE=0.0008;THETA=0.0006;AC=983;AN=2184 GT:DS:GL:BD 0.45009157 0 1 130363252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0255;AVGPOST=0.9993;RSQ=0.9872;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130363281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0254;AVGPOST=0.9985;RSQ=0.9728;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130363389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130363404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0255;AVGPOST=0.9993;RSQ=0.9865;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130363442 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5450;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130363450 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0235;AVGPOST=0.9978;RSQ=0.9588;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130363452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3625;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130363529 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130363614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1623;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0003;THETA=0.0013;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 130363633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0254;AVGPOST=0.9995;RSQ=0.9908;ERATE=0.0003;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130363792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0254;AVGPOST=0.9994;RSQ=0.9891;ERATE=0.0003;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130363805 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4869;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130363836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0032;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130363906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2053;AVGPOST=0.9978;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 130363943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6530;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130363971 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9879;ERATE=0.0003;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130363979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0248;AVGPOST=0.9993;RSQ=0.9874;ERATE=0.0003;THETA=0.0018;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130363992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5384;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130364009 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1968;AVGPOST=0.9965;RSQ=0.9930;ERATE=0.0003;THETA=0.0036;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 130364105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130364109 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5872;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130364139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7079;ERATE=0.0003;THETA=0.0101;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130364180 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.978;LDAF=0.4594;AVGPOST=0.9867;RSQ=0.9804;ERATE=0.0005;THETA=0.0095;AC=1004;AN=2184 GT:DS:GL:BD 0.45970696 0 1 130364390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0004;THETA=0.0111;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130364452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130364519 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130364558 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0301;AVGPOST=0.9963;RSQ=0.9520;ERATE=0.0006;THETA=0.0130;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130364599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.972;LDAF=0.1293;AVGPOST=0.9925;RSQ=0.9766;ERATE=0.0003;THETA=0.0175;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 130364627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.8964;ERATE=0.0004;THETA=0.0240;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130364900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.948;LDAF=0.5008;AVGPOST=0.9694;RSQ=0.9582;ERATE=0.0053;THETA=0.0191;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 130365026 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0087;AVGPOST=0.9973;RSQ=0.8727;ERATE=0.0007;THETA=0.0139;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130365078 rs10634629 T TGC 14051 PASS INDEL;BAVGPOST=0.904;BRSQ=0.788;LDAF=0.3374;AVGPOST=0.8805;RSQ=0.7786;ERATE=0.0336;THETA=0.0149;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 130365095 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.981;LDAF=0.3774;AVGPOST=0.9798;RSQ=0.9683;ERATE=0.0008;THETA=0.0217;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 130365197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9290;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130365202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130365294 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0363;AVGPOST=0.9980;RSQ=0.9782;ERATE=0.0004;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130365442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0345;AVGPOST=0.9992;RSQ=0.9896;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130365527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7584;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130365528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5922;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130365600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0084;AVGPOST=0.9982;RSQ=0.9140;ERATE=0.0003;THETA=0.0017;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130365617 rs71658692 AAATTATATAC A 2966 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0216;AVGPOST=0.9989;RSQ=0.9768;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130365700 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.709;LDAF=0.0295;AVGPOST=0.9808;RSQ=0.7521;ERATE=0.0005;THETA=0.0029;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 130365711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5027;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130365763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0101;AVGPOST=0.9980;RSQ=0.9339;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130365939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7893;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130366123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0139;AVGPOST=0.9928;RSQ=0.8209;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130366369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3896;AVGPOST=0.9846;RSQ=0.9768;ERATE=0.0012;THETA=0.0002;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 130366392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130366393 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0075;AVGPOST=0.9987;RSQ=0.9248;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130366489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0332;AVGPOST=0.9990;RSQ=0.9893;ERATE=0.0003;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130366661 . ATAT A 804 PASS INDEL;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0081;AVGPOST=0.9975;RSQ=0.8703;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130366814 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130366922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130366925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0347;AVGPOST=0.9984;RSQ=0.9822;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130367037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8525;ERATE=0.0003;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130367060 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8835;ERATE=0.0009;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130367140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130367184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130367221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0031;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130367247 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0329;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130367267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130367334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130367335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8070;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0036;AC=1764;AN=2184 GT:DS:GL:BD 0.80769229 1 1 130367371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130367374 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9673;ERATE=0.0003;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130367438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130367444 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0334;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0010;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130367640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130367653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130367693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130367727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0338;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130367784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0338;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130367825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9531;ERATE=0.0003;THETA=0.0028;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130367829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7956;AVGPOST=0.9965;RSQ=0.9915;ERATE=0.0007;THETA=0.0003;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 130367842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9088;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130367863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7964;AVGPOST=0.9983;RSQ=0.9951;ERATE=0.0006;THETA=0.0018;AC=1741;AN=2184 GT:DS:GL:BD 0.79716116 1 1 130367936 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130368150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7828;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130368170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9437;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130368176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130368457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8039;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130368468 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4728;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130368504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130368603 . T TA 256 PASS INDEL;BAVGPOST=0.988;BRSQ=0.542;LDAF=0.0207;AVGPOST=0.9746;RSQ=0.5366;ERATE=0.0055;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130368635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6197;ERATE=0.0003;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130368646 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130368727 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130368842 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8786;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130368888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9622;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130369184 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1936;AVGPOST=0.9983;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 130369220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9273;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130369411 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1086;AVGPOST=0.9957;RSQ=0.9839;ERATE=0.0004;THETA=0.0003;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 130369518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130369804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1657;AVGPOST=0.9957;RSQ=0.9892;ERATE=0.0003;THETA=0.0002;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 130369864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8340;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130369893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9432;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130369963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9006;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130369968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9031;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130370012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9807;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130370212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130370342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8700;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130370465 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130370571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130370572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7602;AVGPOST=0.9978;RSQ=0.9955;ERATE=0.0003;THETA=0.0007;AC=1663;AN=2184 GT:DS:GL:BD 0.76144689 1 1 130370742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8643;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130370882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1444;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130370983 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9087;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130371025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6981;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130371113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130371171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8875;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130371200 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.9036;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130371265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130371411 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130371420 . GCTTT G 612 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130371432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130371499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6203;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130371514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0098;AVGPOST=0.9991;RSQ=0.9690;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130371679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6249;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130371888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1444;AVGPOST=0.9990;RSQ=0.9964;ERATE=0.0003;THETA=0.0007;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130371921 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0070;AVGPOST=0.9992;RSQ=0.9509;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130371936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130371997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130372036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5203;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130372427 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7559;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130372496 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5934;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130372639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9460;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130372685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9076;ERATE=0.0004;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130372750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8440;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130372773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4295;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130372780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5720;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130372787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6834;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130373042 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373112 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130373144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6903;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130373297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8935;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130373421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373435 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130373505 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4978;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0108;AVGPOST=0.9990;RSQ=0.9579;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130373774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130373860 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6683;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130374117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9653;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130374217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0069;AVGPOST=0.9983;RSQ=0.9036;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130374249 rs78095147 TC T 30444 PASS INDEL;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3737;AVGPOST=0.9963;RSQ=0.9933;ERATE=0.0006;THETA=0.0003;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 130374492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1171;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130374495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8503;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130374520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130374521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.839;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.9010;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130374541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0050;AVGPOST=0.9963;RSQ=0.7086;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130374555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0814;AVGPOST=0.9994;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 130374566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130374648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7223;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130374661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1171;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130374797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1857;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 130374875 . GTCT G 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130374949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0079;AVGPOST=0.9992;RSQ=0.9554;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130374956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0092;AVGPOST=0.9970;RSQ=0.8692;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130375152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130375239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0882;AVGPOST=0.9985;RSQ=0.9923;ERATE=0.0004;THETA=0.0004;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 130375244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5575;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130375492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2239;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 130375527 . GA G 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4969;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130375672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130375729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5287;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0002;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 130375780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130375806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9742;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130375838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130375849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8628;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130375872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5264;AVGPOST=0.9967;RSQ=0.9946;ERATE=0.0004;THETA=0.0002;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 130375926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.968;LDAF=0.0793;AVGPOST=0.9955;RSQ=0.9784;ERATE=0.0004;THETA=0.0004;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 130375927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130375988 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5667;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130376059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130376114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.4186;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130376307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0053;AVGPOST=0.9981;RSQ=0.8537;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130376314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5289;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 130376415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.2728;AVGPOST=0.9935;RSQ=0.9879;ERATE=0.0017;THETA=0.0002;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 130376561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2519;AVGPOST=0.9958;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 130376594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130376598 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1849;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 130376599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0007;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130376605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2505;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0003;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 130376676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130376679 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.854;LDAF=0.0452;AVGPOST=0.9716;RSQ=0.7703;ERATE=0.0093;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130376735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130376936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0039;AVGPOST=0.9980;RSQ=0.8563;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130376975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9990;RSQ=0.9811;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130377029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7647;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130377038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130377186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7824;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130377190 . ATATT A 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130377270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130377286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130377287 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4963;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130377434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130377620 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8838;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130377749 . A AC 418 PASS INDEL;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0048;AVGPOST=0.9966;RSQ=0.7050;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130377807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7679;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130377988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9501;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130378023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8524;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130378027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5106;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130378049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4559;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130378325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2531;AVGPOST=0.9851;RSQ=0.9709;ERATE=0.0019;THETA=0.0003;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 130378340 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9168;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130378403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2778;AVGPOST=0.9952;RSQ=0.9908;ERATE=0.0010;THETA=0.0003;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 130378427 . AG A 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0106;AVGPOST=0.9898;RSQ=0.6146;ERATE=0.0011;THETA=0.0023;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130379276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8545;ERATE=0.0003;THETA=0.0040;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130379415 . AG A 808 PASS INDEL;BAVGPOST=0.997;BRSQ=0.728;LDAF=0.0065;AVGPOST=0.9963;RSQ=0.7649;ERATE=0.0005;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130379628 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0257;AVGPOST=0.9951;RSQ=0.9253;ERATE=0.0005;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130379642 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4716;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130379679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.952;LDAF=0.6176;AVGPOST=0.9788;RSQ=0.9695;ERATE=0.0010;THETA=0.0064;AC=1359;AN=2184 GT:DS:GL:BD 0.62225276 1 1 130379780 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7073;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130381654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.717;LDAF=0.8704;AVGPOST=0.9149;RSQ=0.7706;ERATE=0.0068;THETA=0.0027;AC=1954;AN=2184 GT:DS:GL:BD 0.89468867 1 1 130382035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.967;LDAF=0.6423;AVGPOST=0.9827;RSQ=0.9774;ERATE=0.0008;THETA=0.0047;AC=1404;AN=2184 GT:DS:GL:BD 0.64285713 1 1 130382394 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.669;LDAF=0.0341;AVGPOST=0.9792;RSQ=0.7551;ERATE=0.0010;THETA=0.0010;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130382455 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.967;LDAF=0.2711;AVGPOST=0.9639;RSQ=0.9387;ERATE=0.0031;THETA=0.0020;AC=585;AN=2184 GT:DS:GL:BD 0.26785713 0 1 130382465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7114;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130382648 rs77941360 TA T 38550 PASS INDEL;BAVGPOST=0.955;BRSQ=0.929;LDAF=0.6244;AVGPOST=0.9656;RSQ=0.9548;ERATE=0.0025;THETA=0.0013;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 130382707 . AG A 27335 PASS INDEL;BAVGPOST=0.990;BRSQ=0.691;LDAF=0.9761;AVGPOST=0.9801;RSQ=0.6742;ERATE=0.0011;THETA=0.0013;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 130382709 rs61426806 G GTAAAA 3046 PASS INDEL;BAVGPOST=0.726;BRSQ=0.095;LDAF=0.8608;AVGPOST=0.7932;RSQ=0.3075;ERATE=0.0083;THETA=0.0010;AC=2072;AN=2184 GT:DS:GL:BD 0.94871795 1 1 130382754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0041;AVGPOST=0.9932;RSQ=0.3656;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130383480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.431;LDAF=0.0047;AVGPOST=0.9952;RSQ=0.6105;ERATE=0.0005;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130383519 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.841;LDAF=0.5203;AVGPOST=0.8669;RSQ=0.8515;ERATE=0.0088;THETA=0.0035;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 130383664 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.878;LDAF=0.5838;AVGPOST=0.9166;RSQ=0.9011;ERATE=0.0028;THETA=0.0017;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 130383701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.409;LDAF=0.9868;AVGPOST=0.9823;RSQ=0.4578;ERATE=0.0013;THETA=0.0021;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 130383782 . C CT 324 PASS INDEL;BAVGPOST=0.994;BRSQ=0.779;LDAF=0.0268;AVGPOST=0.9657;RSQ=0.4419;ERATE=0.0024;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130383920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.963;LDAF=0.6189;AVGPOST=0.9806;RSQ=0.9719;ERATE=0.0026;THETA=0.0027;AC=1355;AN=2184 GT:DS:GL:BD 0.62042123 1 1 130384144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.844;BRSQ=0.788;LDAF=0.6702;AVGPOST=0.8831;RSQ=0.8544;ERATE=0.0013;THETA=0.0046;AC=1504;AN=2184 GT:DS:GL:BD 0.68864471 1 1 130384219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6726;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130384348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130384365 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6083;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130384444 . A AT 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7239;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130384501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0002;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130384508 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130384516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6437;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130384558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9730;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130384730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130384731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2628;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 130384812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2621;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 130385059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.807;LDAF=0.0069;AVGPOST=0.9977;RSQ=0.8746;ERATE=0.0002;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130385079 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3574;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 130385314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9362;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130385331 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0082;AVGPOST=0.9981;RSQ=0.9072;ERATE=0.0002;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130385335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130385363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.9054;ERATE=0.0002;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130385437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7974;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130385583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9297;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130385682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130385690 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5021;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130385697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0447;AVGPOST=0.9997;RSQ=0.9966;ERATE=0.0002;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 130385760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9564;ERATE=0.0002;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130385783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9302;ERATE=0.0006;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130385816 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7144;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130385823 . GA G 2707 PASS INDEL;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0418;AVGPOST=0.9942;RSQ=0.9414;ERATE=0.0015;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130385827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130385856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130385905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5878;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130385924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8944;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130385946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130386047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5431;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130386126 . TG T 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.6092;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130386205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9482;ERATE=0.0002;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130386265 . ATAC A 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7101;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130386278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.7040;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130386449 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4853;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130386490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.918;LDAF=0.0341;AVGPOST=0.9979;RSQ=0.9766;ERATE=0.0003;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130386522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9438;ERATE=0.0002;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130386570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7099;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130386781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6847;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130386856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0002;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130386860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3066;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 130386976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8531;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130387126 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9781;ERATE=0.0002;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130387173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130387181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130387213 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130387280 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130387302 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8708;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130387349 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130387385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.8962;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130387486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2622;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0002;THETA=0.0005;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 130387519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3072;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 130387628 . A AC 235 PASS INDEL;BAVGPOST=0.920;BRSQ=0.059;LDAF=0.0639;AVGPOST=0.8994;RSQ=0.3585;ERATE=0.0062;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130387716 . C CA 2532 PASS INDEL;BAVGPOST=0.943;BRSQ=0.831;LDAF=0.1660;AVGPOST=0.9435;RSQ=0.8805;ERATE=0.0056;THETA=0.0008;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 130387731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0414;AVGPOST=0.9979;RSQ=0.9798;ERATE=0.0002;THETA=0.0010;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130387778 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8272;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130387923 . CA C 553 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9318;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130387942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0002;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130388063 . GA G 187 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8934;ERATE=0.0002;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130388201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.961;LDAF=0.0999;AVGPOST=0.9968;RSQ=0.9867;ERATE=0.0004;THETA=0.0010;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 130388258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130388276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130388278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130388301 . T TA 17091 PASS INDEL;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.3008;AVGPOST=0.9936;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 130388346 rs61140785 A AC 43314 PASS INDEL;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.3013;AVGPOST=0.9941;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 130388347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9601;ERATE=0.0003;THETA=0.0016;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130388363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9340;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130388387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.8890;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130388526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9382;ERATE=0.0002;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130388527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5309;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130388531 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7662;ERATE=0.0003;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130388588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0824;AVGPOST=0.9978;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 130388680 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8736;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130388689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130388882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130388990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0452;AVGPOST=0.9987;RSQ=0.9896;ERATE=0.0003;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 130388998 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9816;ERATE=0.0003;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130389061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7056;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130389062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0815;AVGPOST=0.9994;RSQ=0.9969;ERATE=0.0002;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 130389143 rs59833560 T TTTG 25426 PASS INDEL;BAVGPOST=0.952;BRSQ=0.914;LDAF=0.2407;AVGPOST=0.9787;RSQ=0.9642;ERATE=0.0016;THETA=0.0005;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 130389173 . G GT 1940 PASS INDEL;BAVGPOST=0.930;BRSQ=0.713;LDAF=0.1216;AVGPOST=0.9462;RSQ=0.8167;ERATE=0.0047;THETA=0.0010;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 130389194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1289;AVGPOST=0.9965;RSQ=0.9873;ERATE=0.0007;THETA=0.0009;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 130389228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130389397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130389493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130389507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130389776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130389985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130390205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0293;AVGPOST=0.9994;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130390523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6447;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0293;AVGPOST=0.9982;RSQ=0.9807;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130390584 . CA C 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130390811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5699;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130390966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130391011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4325;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0005;THETA=0.0001;AC=945;AN=2184 GT:DS:GL:BD 0.43269232 0 1 130391059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391442 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130391458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5901;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7582;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130391808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5607;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130391886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.626;LDAF=0.0061;AVGPOST=0.9958;RSQ=0.7549;ERATE=0.0007;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130391986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3665;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130392028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.964;LDAF=0.1557;AVGPOST=0.9968;RSQ=0.9901;ERATE=0.0004;THETA=0.0004;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 130392045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4995;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130392083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7620;ERATE=0.0005;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130392174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130392378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130392556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1627;AVGPOST=0.9981;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 130392581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130392733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.9106;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130392882 . G GC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130392963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130393183 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.966;LDAF=0.0571;AVGPOST=0.9937;RSQ=0.9574;ERATE=0.0007;THETA=0.0013;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 130393206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5721;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130393214 . G GA 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130393242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0098;AVGPOST=0.9976;RSQ=0.9017;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130393319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0568;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 130393372 . TC T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130393512 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8143;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130393519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130393661 . CAG C 109 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4662;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130393727 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0292;AVGPOST=0.9983;RSQ=0.9819;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130393747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7889;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130393791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6630;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0005;THETA=0.0004;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 130393822 . TG T 603 PASS INDEL;BAVGPOST=0.788;BRSQ=0.572;LDAF=0.3293;AVGPOST=0.8805;RSQ=0.8031;ERATE=0.0020;THETA=0.0005;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 130393953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.4319;AVGPOST=0.9908;RSQ=0.9845;ERATE=0.0012;THETA=0.0002;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 130393954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6213;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130394019 . C CT 1492 PASS INDEL;BAVGPOST=0.982;BRSQ=0.828;LDAF=0.0652;AVGPOST=0.9633;RSQ=0.7920;ERATE=0.0041;THETA=0.0003;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 130394241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0031;AVGPOST=0.9964;RSQ=0.5817;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130394254 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7301;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130394262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130394295 . T TGA 2359 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130394329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4323;AVGPOST=0.9948;RSQ=0.9917;ERATE=0.0008;THETA=0.0003;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 130394348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0562;AVGPOST=0.9989;RSQ=0.9922;ERATE=0.0003;THETA=0.0018;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 130394387 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0672;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130394497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130394509 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0380;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0002;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130394536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8196;AVGPOST=0.9967;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=1789;AN=2184 GT:DS:GL:BD 0.81913918 1 1 130394641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130394955 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2141;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130394956 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130395020 . GA G 114 PASS INDEL;BAVGPOST=0.998;BRSQ=0.364;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.6251;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130395053 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9822;ERATE=0.0002;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130395076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130395091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2219;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 130395127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3053;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 130395153 . A ATATG 309 PASS INDEL;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5539;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130395188 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0668;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0002;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130395233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8374;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130395320 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6675;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130395322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1254;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 130395418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3476;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130395432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0380;AVGPOST=0.9991;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130395467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8414;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130395526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7631;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130395625 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.920;LDAF=0.3367;AVGPOST=0.9282;RSQ=0.8773;ERATE=0.0268;THETA=0.0003;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 130395736 . T TA 194 PASS INDEL;BAVGPOST=0.964;BRSQ=0.456;LDAF=0.0809;AVGPOST=0.9032;RSQ=0.4718;ERATE=0.0148;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 130395745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3487;AVGPOST=0.9967;RSQ=0.9943;ERATE=0.0006;THETA=0.0005;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 130395992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5290;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130396013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6983;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130396044 rs11326328 AC A 600 PASS INDEL;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.9128;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130396088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3488;AVGPOST=0.9948;RSQ=0.9911;ERATE=0.0008;THETA=0.0001;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 130396184 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3475;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130396203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0591;AVGPOST=0.9989;RSQ=0.9946;ERATE=0.0002;THETA=0.0005;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 130396287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2201;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 130396357 . G GC 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130396385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130396426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1851;AVGPOST=0.9986;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 130396487 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130396517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0002;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130396598 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3467;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0002;THETA=0.0002;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 130396731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130396733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130396953 rs112742802 GC G 23798 PASS INDEL;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.3437;AVGPOST=0.9712;RSQ=0.9496;ERATE=0.0065;THETA=0.0002;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 130397011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7912;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130397038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6332;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130397056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2222;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 130397109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7198;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130397178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130397410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6402;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130397488 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5881;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130397521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130397569 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1187;AVGPOST=0.9985;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 130397586 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3471;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0007;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130397726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0116;AVGPOST=0.9967;RSQ=0.8869;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130397801 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.812;LDAF=0.0122;AVGPOST=0.9975;RSQ=0.9252;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130397863 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9875;ERATE=0.0002;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130397930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1254;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 130397999 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130398021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3473;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0002;THETA=0.0004;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130398238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7877;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130398373 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130398468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9496;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130398490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0965;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 130398516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2191;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 130398522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8798;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130398629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130398640 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3474;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0005;THETA=0.0003;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 130398730 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0002;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130398776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0343;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0002;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130398849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6340;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130398862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130398865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5683;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130399084 . A AT 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130399279 rs72253615 TTAAC T 15865 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1249;AVGPOST=0.9979;RSQ=0.9924;ERATE=0.0004;THETA=0.0004;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 130399398 . CT C 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8719;ERATE=0.0002;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130399442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3438;AVGPOST=0.9957;RSQ=0.9921;ERATE=0.0006;THETA=0.0005;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 130399476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.7398;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130399550 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130399627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9472;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130399680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2484;AVGPOST=0.9964;RSQ=0.9920;ERATE=0.0008;THETA=0.0005;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 130399727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8793;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130399809 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9329;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130399852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9194;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130399945 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0002;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130400010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5669;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130400065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8358;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130400179 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130400184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130400370 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5831;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130400388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130400540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130400565 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9331;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130400607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7204;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0002;THETA=0.0003;AC=1576;AN=2184 GT:DS:GL:BD 0.72161174 1 1 130400639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9678;ERATE=0.0002;THETA=0.0027;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130400697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9704;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130400749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0411;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0002;THETA=0.0002;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130400788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130400808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1118;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0002;THETA=0.0003;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 130400891 rs11398292 A AG 79725 PASS INDEL;BAVGPOST=0.998;BRSQ=0.304;LDAF=0.9926;AVGPOST=0.9939;RSQ=0.6950;ERATE=0.0005;THETA=0.0037;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 130400918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130400930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7299;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130401037 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9213;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130401062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9644;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130401121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9834;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130401125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9444;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130401165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130401178 . TC T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0082;AVGPOST=0.9904;RSQ=0.5561;ERATE=0.0012;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130401242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2025;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0002;THETA=0.0003;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 130401267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130401446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130401842 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8113;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130401964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130402030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8838;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130402080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9995;RSQ=0.9781;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130402160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2025;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 130402219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7959;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130402284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0160;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0002;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130402357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0002;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130402369 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8886;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130402376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9531;ERATE=0.0002;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130402406 . ATTCACCT A 93 PASS INDEL;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.4849;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130402501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0045;AVGPOST=0.9988;RSQ=0.8787;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130402532 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7388;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130402627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1627;AVGPOST=0.9958;RSQ=0.9889;ERATE=0.0004;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 130402629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.882;LDAF=0.0206;AVGPOST=0.9899;RSQ=0.8086;ERATE=0.0012;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130402742 . CGGGA C 1138 PASS INDEL;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0172;AVGPOST=0.9941;RSQ=0.8532;ERATE=0.0010;THETA=0.0001;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130402776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0055;AVGPOST=0.9939;RSQ=0.5510;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130402779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3451;AVGPOST=0.9909;RSQ=0.9851;ERATE=0.0010;THETA=0.0002;AC=756;AN=2184 GT:DS:GL:BD 0.34615386 0 1 130402802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2548;AVGPOST=0.9966;RSQ=0.9926;ERATE=0.0007;THETA=0.0002;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 130402943 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5845;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130403200 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0072;AVGPOST=0.9982;RSQ=0.9109;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130403284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.934;LDAF=0.0367;AVGPOST=0.9924;RSQ=0.9320;ERATE=0.0006;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130403508 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0140;AVGPOST=0.9979;RSQ=0.9413;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130403545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.834;LDAF=0.0085;AVGPOST=0.9966;RSQ=0.8488;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130403572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2035;AVGPOST=0.9983;RSQ=0.9952;ERATE=0.0006;THETA=0.0002;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 130403610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7207;AVGPOST=0.9954;RSQ=0.9915;ERATE=0.0008;THETA=0.0004;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 130403758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0076;AVGPOST=0.9972;RSQ=0.8647;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130403765 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130403777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6883;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=1505;AN=2184 GT:DS:GL:BD 0.68910259 1 1 130403786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9096;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130403813 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9995;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130403826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0308;AVGPOST=0.9975;RSQ=0.9700;ERATE=0.0005;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130403947 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8703;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130404045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8648;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130404112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9705;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130404125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130404269 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7219;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0004;THETA=0.0008;AC=1578;AN=2184 GT:DS:GL:BD 0.72252744 1 1 130404352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.491;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4694;ERATE=0.0012;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130404409 . G GA 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130404468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0002;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130404510 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.952;LDAF=0.1819;AVGPOST=0.9843;RSQ=0.9650;ERATE=0.0004;THETA=0.0009;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 130404558 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.952;LDAF=0.1818;AVGPOST=0.9842;RSQ=0.9646;ERATE=0.0005;THETA=0.0113;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 130404564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0314;AVGPOST=0.9975;RSQ=0.9698;ERATE=0.0003;THETA=0.0127;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 130404636 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8898;ERATE=0.0003;THETA=0.0061;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130404700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6521;ERATE=0.0004;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130404705 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0145;AVGPOST=0.9931;RSQ=0.8128;ERATE=0.0004;THETA=0.0041;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130404741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.516;LDAF=0.0082;AVGPOST=0.9938;RSQ=0.6688;ERATE=0.0009;THETA=0.0176;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130404953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.888;LDAF=0.0329;AVGPOST=0.9878;RSQ=0.8604;ERATE=0.0019;THETA=0.0050;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130404995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.5973;ERATE=0.0005;THETA=0.0098;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130405029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.816;LDAF=0.2914;AVGPOST=0.9089;RSQ=0.8512;ERATE=0.0057;THETA=0.0051;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 130405034 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0302;AVGPOST=0.9941;RSQ=0.9245;ERATE=0.0009;THETA=0.0068;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130405079 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.916;LDAF=0.1061;AVGPOST=0.9785;RSQ=0.9181;ERATE=0.0005;THETA=0.0195;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 130405095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.804;LDAF=0.1768;AVGPOST=0.9374;RSQ=0.8533;ERATE=0.0014;THETA=0.0069;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 130405120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.648;LDAF=0.0489;AVGPOST=0.9663;RSQ=0.7444;ERATE=0.0005;THETA=0.0045;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130405123 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.636;LDAF=0.0517;AVGPOST=0.9630;RSQ=0.7310;ERATE=0.0010;THETA=0.0185;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130405128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.644;LDAF=0.1698;AVGPOST=0.8918;RSQ=0.6970;ERATE=0.0367;THETA=0.0214;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 130405202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.500;LDAF=0.0059;AVGPOST=0.9936;RSQ=0.5996;ERATE=0.0006;THETA=0.0124;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130405246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6683;ERATE=0.0004;THETA=0.0085;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130405289 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0169;AVGPOST=0.9958;RSQ=0.9103;ERATE=0.0004;THETA=0.0177;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130405316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.841;LDAF=0.0253;AVGPOST=0.9901;RSQ=0.8456;ERATE=0.0021;THETA=0.0125;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130405321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.909;LDAF=0.1159;AVGPOST=0.9784;RSQ=0.9322;ERATE=0.0005;THETA=0.0015;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 130405342 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.931;LDAF=0.1069;AVGPOST=0.9807;RSQ=0.9283;ERATE=0.0007;THETA=0.0080;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 130405352 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.750;LDAF=0.0337;AVGPOST=0.9763;RSQ=0.7251;ERATE=0.0011;THETA=0.0098;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130405365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5601;ERATE=0.0005;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130405394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.924;LDAF=0.1012;AVGPOST=0.9810;RSQ=0.9295;ERATE=0.0012;THETA=0.0142;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 130405414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.873;LDAF=0.6955;AVGPOST=0.9286;RSQ=0.8888;ERATE=0.0006;THETA=0.0017;AC=1550;AN=2184 GT:DS:GL:BD 0.70970696 1 1 130405428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.876;LDAF=0.6936;AVGPOST=0.9291;RSQ=0.8908;ERATE=0.0010;THETA=0.0278;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 130405437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.4900;ERATE=0.0005;THETA=0.0224;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130405501 rs61607094 A ACGG 18906 PASS INDEL;BAVGPOST=0.914;BRSQ=0.818;LDAF=0.2607;AVGPOST=0.8985;RSQ=0.8141;ERATE=0.0089;THETA=0.0107;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 130405523 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.851;LDAF=0.7755;AVGPOST=0.9430;RSQ=0.8889;ERATE=0.0010;THETA=0.0007;AC=1713;AN=2184 GT:DS:GL:BD 0.78434068 1 1 130405524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.851;LDAF=0.2242;AVGPOST=0.9442;RSQ=0.8922;ERATE=0.0005;THETA=0.0045;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 130405525 . G GGAT 19951 PASS INDEL;BAVGPOST=0.929;BRSQ=0.849;LDAF=0.2246;AVGPOST=0.9426;RSQ=0.8883;ERATE=0.0005;THETA=0.0320;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 130405525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.799;LDAF=0.0152;AVGPOST=0.9933;RSQ=0.8232;ERATE=0.0005;THETA=0.0162;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130405536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.798;LDAF=0.0148;AVGPOST=0.9935;RSQ=0.8275;ERATE=0.0005;THETA=0.0049;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130405539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.804;LDAF=0.1352;AVGPOST=0.9460;RSQ=0.8186;ERATE=0.0144;THETA=0.0098;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 130405605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.702;LDAF=0.0052;AVGPOST=0.9975;RSQ=0.7972;ERATE=0.0005;THETA=0.0052;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130405613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5903;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130405619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.714;LDAF=0.0046;AVGPOST=0.9962;RSQ=0.6945;ERATE=0.0004;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130405626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.9056;ERATE=0.0003;THETA=0.0165;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130405639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130405676 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.863;LDAF=0.0231;AVGPOST=0.9947;RSQ=0.9041;ERATE=0.0015;THETA=0.0110;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130405685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8316;ERATE=0.0004;THETA=0.0066;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130405691 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.789;LDAF=0.0316;AVGPOST=0.9869;RSQ=0.8363;ERATE=0.0012;THETA=0.0185;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130405697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.6004;ERATE=0.0006;THETA=0.0195;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130405745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.882;LDAF=0.0360;AVGPOST=0.9932;RSQ=0.9329;ERATE=0.0005;THETA=0.0096;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130405815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0152;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130405816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.865;LDAF=0.1635;AVGPOST=0.9520;RSQ=0.8770;ERATE=0.0101;THETA=0.0172;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 130405841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.883;LDAF=0.0996;AVGPOST=0.9725;RSQ=0.8836;ERATE=0.0008;THETA=0.0113;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 130405855 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7693;ERATE=0.0004;THETA=0.0213;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130405875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.739;LDAF=0.0049;AVGPOST=0.9965;RSQ=0.6884;ERATE=0.0008;THETA=0.0191;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130405906 . TC T 14319 PASS INDEL;BAVGPOST=0.857;BRSQ=0.722;LDAF=0.3394;AVGPOST=0.8602;RSQ=0.7659;ERATE=0.0090;THETA=0.0304;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 130405912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.486;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0004;THETA=0.0243;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130406028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.908;LDAF=0.4622;AVGPOST=0.9298;RSQ=0.9020;ERATE=0.0033;THETA=0.0113;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 130406045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.869;LDAF=0.4476;AVGPOST=0.9233;RSQ=0.8904;ERATE=0.0059;THETA=0.0117;AC=991;AN=2184 GT:DS:GL:BD 0.45375457 0 1 130406118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.776;LDAF=0.3300;AVGPOST=0.8811;RSQ=0.8225;ERATE=0.0015;THETA=0.0009;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 130406154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.855;BRSQ=0.762;LDAF=0.3578;AVGPOST=0.8756;RSQ=0.8192;ERATE=0.0014;THETA=0.0008;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 130406155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.887;BRSQ=0.809;LDAF=0.3908;AVGPOST=0.9002;RSQ=0.8545;ERATE=0.0012;THETA=0.0193;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 130406169 rs11277805 AAAAGAGAG A 13597 PASS INDEL;BAVGPOST=0.836;BRSQ=0.689;LDAF=0.3580;AVGPOST=0.8553;RSQ=0.7426;ERATE=0.0014;THETA=0.0022;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 130406272 rs11277805 AAAGAGAG A 19308 PASS INDEL;BAVGPOST=0.835;BRSQ=0.694;LDAF=0.3753;AVGPOST=0.8490;RSQ=0.7435;ERATE=0.0018;THETA=0.0212;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130406273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.9112;ERATE=0.0003;THETA=0.0246;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130406355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2609;AVGPOST=0.9857;RSQ=0.9708;ERATE=0.0008;THETA=0.0063;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 130406406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0344;AVGPOST=0.9981;RSQ=0.9798;ERATE=0.0003;THETA=0.0033;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130406472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130406540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6672;ERATE=0.0006;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130406575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0155;AVGPOST=0.9970;RSQ=0.9215;ERATE=0.0004;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130406588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3286;AVGPOST=0.9928;RSQ=0.9872;ERATE=0.0006;THETA=0.0008;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 130406621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.895;LDAF=0.0131;AVGPOST=0.9965;RSQ=0.8977;ERATE=0.0004;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130406630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9093;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130406696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.916;LDAF=0.0205;AVGPOST=0.9963;RSQ=0.9264;ERATE=0.0008;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130406746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5547;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130406755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.8100;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130406766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0048;AVGPOST=0.9982;RSQ=0.8872;ERATE=0.0003;THETA=0.0027;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130406795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130406895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0344;AVGPOST=0.9994;RSQ=0.9923;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130406899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9800;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130406994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7853;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130407027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7518;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130407101 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3929;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130407139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130407144 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2638;AVGPOST=0.9956;RSQ=0.9907;ERATE=0.0006;THETA=0.0006;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 130407160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0513;AVGPOST=0.9983;RSQ=0.9865;ERATE=0.0003;THETA=0.0013;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 130407173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130407279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0378;AVGPOST=0.9968;RSQ=0.9706;ERATE=0.0005;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130407289 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130407299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6841;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130407385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5952;AVGPOST=0.9960;RSQ=0.9935;ERATE=0.0004;THETA=0.0004;AC=1301;AN=2184 GT:DS:GL:BD 0.59569597 1 1 130407700 . GA G 2196 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0211;AVGPOST=0.9989;RSQ=0.9765;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130407749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8054;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130407784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130407830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0062;AVGPOST=0.9980;RSQ=0.8759;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130407843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0004;THETA=0.0016;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130407895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7785;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130407946 . AAG A 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130407967 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130408016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.5897;AVGPOST=0.9963;RSQ=0.9941;ERATE=0.0005;THETA=0.0005;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 130408051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130408057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2712;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0006;THETA=0.0002;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 130408060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130408065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3296;AVGPOST=0.9942;RSQ=0.9894;ERATE=0.0013;THETA=0.0004;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 130408111 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7550;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130408116 . T TC 4002 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0416;AVGPOST=0.9984;RSQ=0.9844;ERATE=0.0005;THETA=0.0007;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130408127 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7906;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130408132 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2592;AVGPOST=0.9974;RSQ=0.9947;ERATE=0.0005;THETA=0.0010;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 130408166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.899;LDAF=0.5638;AVGPOST=0.9161;RSQ=0.8625;ERATE=0.0239;THETA=0.0005;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 130408212 . C CCTGT 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130408325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6409;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130408428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9718;ERATE=0.0004;THETA=0.0037;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130408490 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7649;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130408503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0341;AVGPOST=0.9985;RSQ=0.9802;ERATE=0.0005;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 130408659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.404;LDAF=0.0104;AVGPOST=0.9882;RSQ=0.5411;ERATE=0.0017;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130408738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.919;LDAF=0.2538;AVGPOST=0.9618;RSQ=0.9188;ERATE=0.0033;THETA=0.0008;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 130408758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0098;AVGPOST=0.9974;RSQ=0.8838;ERATE=0.0008;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130408775 . A AT 360 PASS INDEL;BAVGPOST=0.989;BRSQ=0.636;LDAF=0.0111;AVGPOST=0.9894;RSQ=0.6105;ERATE=0.0009;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130408780 rs72513641 A AT 11023 PASS INDEL;BAVGPOST=0.952;BRSQ=0.878;LDAF=0.2548;AVGPOST=0.9819;RSQ=0.9618;ERATE=0.0017;THETA=0.0005;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 130408790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7929;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130409004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2620;AVGPOST=0.9964;RSQ=0.9916;ERATE=0.0012;THETA=0.0005;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 130409042 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0083;AVGPOST=0.9978;RSQ=0.8986;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130409076 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0185;AVGPOST=0.9952;RSQ=0.8973;ERATE=0.0008;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130409077 . AT A 69 PASS INDEL;BAVGPOST=0.995;BRSQ=0.602;LDAF=0.0098;AVGPOST=0.9893;RSQ=0.5848;ERATE=0.0020;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130409077 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.701;LDAF=0.0179;AVGPOST=0.9867;RSQ=0.7016;ERATE=0.0020;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130409078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2596;AVGPOST=0.9974;RSQ=0.9944;ERATE=0.0005;THETA=0.0007;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 130409133 . GCATGTTCTGCA G 862 PASS INDEL;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0037;AVGPOST=0.9965;RSQ=0.6089;ERATE=0.0012;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130409215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0368;AVGPOST=0.9969;RSQ=0.9680;ERATE=0.0006;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130409278 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0136;AVGPOST=0.9989;RSQ=0.9672;ERATE=0.0004;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130409385 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0362;AVGPOST=0.9982;RSQ=0.9808;ERATE=0.0004;THETA=0.0009;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130409480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.505;LDAF=0.0063;AVGPOST=0.9911;RSQ=0.4383;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130409520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4914;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 130409626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1789;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 130409792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130409899 . CT C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4769;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130409942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1264;AVGPOST=0.9968;RSQ=0.9899;ERATE=0.0003;THETA=0.0001;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 130409954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9995;RSQ=0.9878;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130409963 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130410103 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130410178 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130410243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.8424;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130410323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0123;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130410442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0187;AVGPOST=0.9959;RSQ=0.9210;ERATE=0.0003;THETA=0.0001;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130410469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8249;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130410514 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130410624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8085;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130410705 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0110;AVGPOST=0.9988;RSQ=0.9540;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130410810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0104;AVGPOST=0.9973;RSQ=0.9235;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130410895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8665;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130410906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=0.9996;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130410977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8384;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130410997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9852;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130411003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130411071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9091;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130411084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8688;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130411111 . TG T 285 PASS INDEL;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0046;AVGPOST=0.9965;RSQ=0.6895;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130411231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9786;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130411474 . TATA T 127 PASS INDEL;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3253;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130411629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5277;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130411654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5959;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130411752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9048;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130411771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9038;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130411789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130411916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130411960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130411998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.965;LDAF=0.0554;AVGPOST=0.9933;RSQ=0.9610;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 130412190 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4798;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 130412368 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5097;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0005;THETA=0.0007;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 130412398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130412449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130412478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7398;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130412479 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130412529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130412553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1793;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 130412666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1797;AVGPOST=0.9986;RSQ=0.9965;ERATE=0.0004;THETA=0.0003;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 130412828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9802;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130412834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9991;RSQ=0.9845;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130412899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130412972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130412992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6008;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130413028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6943;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130413092 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130413238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6578;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130413333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0410;AVGPOST=0.9979;RSQ=0.9807;ERATE=0.0003;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130413334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130413499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4913;AVGPOST=0.9975;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 130413587 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130413630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.967;LDAF=0.1247;AVGPOST=0.9930;RSQ=0.9786;ERATE=0.0005;THETA=0.0063;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 130413735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0184;AVGPOST=0.9988;RSQ=0.9754;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130413917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130413967 . CA C 7581 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0567;AVGPOST=0.9983;RSQ=0.9888;ERATE=0.0003;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 130414105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130414182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9267;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130414259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9136;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130414292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0095;AVGPOST=0.9983;RSQ=0.9260;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130414338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130414439 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7956;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130414509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7903;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130414519 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5741;ERATE=0.0003;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130414524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6446;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130414528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5707;ERATE=0.0003;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130414568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9591;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130414578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0511;AVGPOST=0.9985;RSQ=0.9897;ERATE=0.0003;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 130414613 . ATAT A 249 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7710;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130414678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9989;RSQ=0.9749;ERATE=0.0004;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130414807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4606;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130414825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3584;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130414898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0215;AVGPOST=0.9989;RSQ=0.9804;ERATE=0.0005;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130414963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7879;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130414977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130415067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130415097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130415158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8660;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130415192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130415244 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130415262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5352;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130415465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8620;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130415491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9984;RSQ=0.9108;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130415504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.974;LDAF=0.1784;AVGPOST=0.9878;RSQ=0.9673;ERATE=0.0005;THETA=0.0005;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 130415708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8806;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130415723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130415773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5206;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130415804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130415842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6809;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130416001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7139;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130416070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0596;AVGPOST=0.9974;RSQ=0.9796;ERATE=0.0008;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 130416193 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6447;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130416359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6021;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130416580 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9990;RSQ=0.9606;ERATE=0.0005;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130416602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1883;AVGPOST=0.9947;RSQ=0.9846;ERATE=0.0008;THETA=0.0006;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 130416622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0096;AVGPOST=0.9941;RSQ=0.7550;ERATE=0.0011;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130416740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4851;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130416924 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130417021 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6279;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417045 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9216;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130417054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130417172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130417190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417210 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130417217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130417256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130417299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8819;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130417353 . CTT C 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5730;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417371 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.4039;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130417476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9440;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130417524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417587 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0117;AVGPOST=0.9969;RSQ=0.8795;ERATE=0.0004;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130417615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9994;RSQ=0.9639;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130417713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130417757 . A AT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4431;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130417896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0192;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130417903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8222;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130417967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9981;RSQ=0.9075;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130418059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130418077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.897;LDAF=0.0139;AVGPOST=0.9968;RSQ=0.9221;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130418183 . T TTTAC 28104 PASS INDEL;BAVGPOST=0.934;BRSQ=0.878;LDAF=0.4512;AVGPOST=0.8962;RSQ=0.8388;ERATE=0.0395;THETA=0.0006;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 130418234 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130418321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7014;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130418344 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130418375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130418380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130418412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0132;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130418547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130418593 . AC A 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4316;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130418599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9425;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130418675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8283;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130418805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130418834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9039;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130418843 . TC T 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130418961 . CAT C 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.4773;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130419305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130419334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130419355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130419383 . G GT 268 PASS INDEL;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0057;AVGPOST=0.9956;RSQ=0.6836;ERATE=0.0006;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130419417 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130419515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0602;AVGPOST=0.9987;RSQ=0.9895;ERATE=0.0004;THETA=0.0006;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 130419648 . CCTGT C 15597 PASS INDEL;BAVGPOST=0.901;BRSQ=0.770;LDAF=0.2740;AVGPOST=0.9321;RSQ=0.8860;ERATE=0.0015;THETA=0.0010;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 130419900 rs10709378 TGTTA T 2915 PASS INDEL;BAVGPOST=0.899;BRSQ=0.746;LDAF=0.2390;AVGPOST=0.8874;RSQ=0.7818;ERATE=0.0098;THETA=0.0066;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 130419906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1543;AVGPOST=0.9904;RSQ=0.9781;ERATE=0.0004;THETA=0.0019;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 130419934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8169;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=1784;AN=2184 GT:DS:GL:BD 0.81684983 1 1 130420077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7131;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130420106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130420295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.8986;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130420342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5899;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130420377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8565;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130420448 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6142;AVGPOST=0.9964;RSQ=0.9948;ERATE=0.0005;THETA=0.0006;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 130420461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9150;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130420610 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.807;LDAF=0.4674;AVGPOST=0.9031;RSQ=0.8220;ERATE=0.0494;THETA=0.0003;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 130420649 rs56158823 AT A 44278 PASS INDEL;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6031;AVGPOST=0.9956;RSQ=0.9930;ERATE=0.0006;THETA=0.0009;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 130420671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4542;ERATE=0.0003;THETA=0.0015;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130420747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130420796 . CA C 218 PASS INDEL;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8138;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130420863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130420958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2009;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 130421160 rs34639822 T TC 28137 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2015;AVGPOST=0.9975;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 130421219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8426;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130421286 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0891;AVGPOST=0.9984;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 130421299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7637;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130421307 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6022;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 130421374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7523;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130421516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0150;AVGPOST=0.9989;RSQ=0.9696;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130421566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130421617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9184;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130421639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9040;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130421640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.819;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8583;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130421715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5531;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130421841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6089;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130421871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5285;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130421890 . G GA 7937 PASS INDEL;BAVGPOST=0.966;BRSQ=0.942;LDAF=0.6052;AVGPOST=0.9442;RSQ=0.9198;ERATE=0.0056;THETA=0.0002;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 130421978 rs35544601 A AT 56625 PASS INDEL;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.5959;AVGPOST=0.9891;RSQ=0.9840;ERATE=0.0005;THETA=0.0002;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 130421980 . T TA 12309 PASS INDEL;BAVGPOST=0.940;BRSQ=0.892;LDAF=0.5435;AVGPOST=0.8952;RSQ=0.8500;ERATE=0.0217;THETA=0.0003;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 130421983 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130422046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.6127;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0003;THETA=0.0026;AC=1338;AN=2184 GT:DS:GL:BD 0.61263734 1 1 130422175 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130422241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8638;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130422357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422373 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130422378 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.988;LDAF=0.3107;AVGPOST=0.9943;RSQ=0.9901;ERATE=0.0005;THETA=0.0003;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 130422446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422470 . T TA 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6960;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9530;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8797;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7858;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130422747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8332;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422760 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.939;LDAF=0.0393;AVGPOST=0.9951;RSQ=0.9579;ERATE=0.0003;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 130422764 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130422805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9088;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130422861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9878;ERATE=0.0003;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130423202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0088;AVGPOST=0.9968;RSQ=0.8741;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130423271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6024;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0008;THETA=0.0003;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 130423523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0034;AVGPOST=0.9965;RSQ=0.6415;ERATE=0.0012;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130423614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9117;ERATE=0.0003;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130423805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130423868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5186;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130424164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130424261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0743;AVGPOST=0.9966;RSQ=0.9807;ERATE=0.0004;THETA=0.0006;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130424276 rs113726879 A AT 18303 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1287;AVGPOST=0.9963;RSQ=0.9881;ERATE=0.0004;THETA=0.0010;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 130424315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0003;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130424437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1237;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0004;THETA=0.0049;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 130424684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130424709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130424807 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5910;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130424823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1196;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 130424834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130425083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5789;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130425280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6322;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130425290 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130425295 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9668;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130425304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0164;AVGPOST=0.9987;RSQ=0.9630;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130425508 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0168;AVGPOST=0.9965;RSQ=0.9288;ERATE=0.0004;THETA=0.0025;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130425521 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130425523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0044;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130425638 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9280;ERATE=0.0002;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130425886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130425903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0077;AVGPOST=0.9988;RSQ=0.9256;ERATE=0.0005;THETA=0.0023;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130425928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130425968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5252;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130426017 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8397;ERATE=0.0005;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130426025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6636;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130426052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0034;AVGPOST=0.9977;RSQ=0.7201;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130426238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4872;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130426370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9825;ERATE=0.0003;THETA=0.0034;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130426438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0283;AVGPOST=0.9979;RSQ=0.9716;ERATE=0.0004;THETA=0.0034;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130426535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1792;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0003;THETA=0.0011;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130426574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1431;AVGPOST=0.9951;RSQ=0.9862;ERATE=0.0005;THETA=0.0007;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 130426718 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130426787 . CACTTGTTT C 1037 PASS INDEL;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8267;ERATE=0.0005;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130426906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.8519;AVGPOST=0.9927;RSQ=0.9746;ERATE=0.0006;THETA=0.0003;AC=1861;AN=2184 GT:DS:GL:BD 0.85210621 1 1 130426954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0142;AVGPOST=0.9979;RSQ=0.9525;ERATE=0.0003;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130426962 . G GT 91 PASS INDEL;BAVGPOST=0.986;BRSQ=0.530;LDAF=0.0311;AVGPOST=0.9570;RSQ=0.4253;ERATE=0.0105;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130427051 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3550;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130427052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.6290;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130427130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0119;AVGPOST=0.9985;RSQ=0.9449;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130427210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9762;ERATE=0.0002;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130427212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0112;AVGPOST=0.9965;RSQ=0.8700;ERATE=0.0007;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130427224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7942;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130427324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9987;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130427336 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2231;AVGPOST=0.9965;RSQ=0.9922;ERATE=0.0005;THETA=0.0005;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 130427425 . TA T 622 PASS INDEL;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0091;AVGPOST=0.9965;RSQ=0.8421;ERATE=0.0006;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130427445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0030;AVGPOST=0.9996;RSQ=0.9535;ERATE=0.0002;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130427449 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130427472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130427480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0045;AVGPOST=0.9968;RSQ=0.7302;ERATE=0.0012;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130427547 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7676;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130427588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8642;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130427642 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130427662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9824;AVGPOST=0.9985;RSQ=0.9683;ERATE=0.0002;THETA=0.0003;AC=2147;AN=2184 GT:DS:GL:BD 0.98305863 1 1 130427665 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130427788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130427876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0392;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0002;THETA=0.0002;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 130428033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130428059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5294;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130428184 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0002;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130428231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130428288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130428337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130428402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130428435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9532;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130428452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130428523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9255;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130428736 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6749;AVGPOST=0.9962;RSQ=0.9928;ERATE=0.0005;THETA=0.0002;AC=1475;AN=2184 GT:DS:GL:BD 0.67536628 1 1 130428766 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130428782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3251;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0004;THETA=0.0001;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 130428797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4908;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130428862 . A AT 255 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8197;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130428868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130428909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130428916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130428924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130428942 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130429069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9725;ERATE=0.0002;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130429110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130429387 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6844;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130429401 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7458;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130429406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130429434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9301;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130429555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7597;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130429841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8223;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130429846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1875;AVGPOST=0.9968;RSQ=0.9921;ERATE=0.0009;THETA=0.0003;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 130429848 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130429886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130429944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130430068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8404;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130430069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0068;AVGPOST=0.9980;RSQ=0.9024;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130430239 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4768;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8609;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130430369 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.669;LDAF=0.0112;AVGPOST=0.9921;RSQ=0.6874;ERATE=0.0008;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130430400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.830;LDAF=0.0107;AVGPOST=0.9957;RSQ=0.8668;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130430470 . G GA 728 PASS INDEL;BAVGPOST=0.933;BRSQ=0.548;LDAF=0.0929;AVGPOST=0.9096;RSQ=0.5667;ERATE=0.0145;THETA=0.0007;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 130430512 . AG A 14876 PASS INDEL;BAVGPOST=0.943;BRSQ=0.909;LDAF=0.4488;AVGPOST=0.9562;RSQ=0.9410;ERATE=0.0040;THETA=0.0005;AC=1003;AN=2184 GT:DS:GL:BD 0.45924908 0 1 130430516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.926;LDAF=0.4463;AVGPOST=0.9607;RSQ=0.9464;ERATE=0.0054;THETA=0.0008;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 130430517 . G GA 10 PASS INDEL;BAVGPOST=0.998;BRSQ=0.646;LDAF=0.0032;AVGPOST=0.9959;RSQ=0.5377;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130430527 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.891;LDAF=0.0323;AVGPOST=0.9929;RSQ=0.9095;ERATE=0.0009;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130430535 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6924;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0007;THETA=0.0005;AC=1514;AN=2184 GT:DS:GL:BD 0.69322342 1 1 130430644 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6196;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130430653 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8252;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130430688 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130430725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9992;RSQ=0.9725;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130430727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130430766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5380;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=1177;AN=2184 GT:DS:GL:BD 0.53891939 1 1 130430771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130430947 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130430984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0186;AVGPOST=0.9993;RSQ=0.9836;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 130431031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0546;AVGPOST=0.9991;RSQ=0.9931;ERATE=0.0005;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 130431058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0952;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 130431059 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8241;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130431158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7494;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130431165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6961;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=1522;AN=2184 GT:DS:GL:BD 0.69688642 1 1 130431200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7309;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130431273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.977;LDAF=0.7078;AVGPOST=0.9946;RSQ=0.9903;ERATE=0.0005;THETA=0.0007;AC=1547;AN=2184 GT:DS:GL:BD 0.70833331 1 1 130431499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8986;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130431635 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.6846;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0007;THETA=0.0008;AC=1497;AN=2184 GT:DS:GL:BD 0.68543959 1 1 130431708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130431722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9464;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130431769 . AT A 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5701;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130431814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6848;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0006;THETA=0.0005;AC=1497;AN=2184 GT:DS:GL:BD 0.68543959 1 1 130431846 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9374;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130431876 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130431908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130431939 . T TC 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130432027 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6863;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130432052 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130432081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130432168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6368;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130432221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9471;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130432281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5457;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0009;AC=1193;AN=2184 GT:DS:GL:BD 0.54624540 1 1 130432361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7635;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130432473 . G GTTTGC 2524 PASS INDEL;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0098;AVGPOST=0.9979;RSQ=0.9088;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130432515 . T TTGC 1268 PASS INDEL;BAVGPOST=0.997;BRSQ=0.875;LDAF=0.0103;AVGPOST=0.9974;RSQ=0.8926;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130432522 . ATGAT A 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130432706 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0950;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0004;THETA=0.0007;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 130432708 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130432828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130432853 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130433006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130433086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130433186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6866;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 130433219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5458;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0005;THETA=0.0006;AC=1194;AN=2184 GT:DS:GL:BD 0.54670328 1 1 130433284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130433347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7313;ERATE=0.0007;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130433367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7024;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130433401 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130433463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9832;ERATE=0.0003;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130433469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130433553 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7121;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130433555 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7325;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130433567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9593;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130433648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7637;ERATE=0.0010;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130433718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130433726 . G GCT 2406 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0078;AVGPOST=0.9993;RSQ=0.9594;ERATE=0.0004;THETA=0.0038;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130433871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5687;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0142;AVGPOST=0.9997;RSQ=0.9913;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130434105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130434132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7760;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130434143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434172 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130434212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7784;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130434246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6773;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130434302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0144;AVGPOST=0.9986;RSQ=0.9604;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130434325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7618;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130434370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6136;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9772;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130434494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130434497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7318;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130434540 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0321;AVGPOST=0.9990;RSQ=0.9899;ERATE=0.0003;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130434667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434721 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130434748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0978;AVGPOST=0.9972;RSQ=0.9876;ERATE=0.0005;THETA=0.0027;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 130434830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130434846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0545;AVGPOST=0.9979;RSQ=0.9866;ERATE=0.0004;THETA=0.0004;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 130434929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9698;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130434986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9614;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130435171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6517;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.1354;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130435381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435430 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9982;RSQ=0.9566;ERATE=0.0004;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130435581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130435610 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0292;AVGPOST=0.9984;RSQ=0.9814;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130435618 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0207;AVGPOST=0.9972;RSQ=0.9526;ERATE=0.0004;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130435646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5933;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130435692 . ATATAT A 6358 PASS INDEL;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0292;AVGPOST=0.9980;RSQ=0.9688;ERATE=0.0008;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130435729 . A AT 52 PASS INDEL;BAVGPOST=0.580;BRSQ=0.087;LDAF=0.2787;AVGPOST=0.6814;RSQ=0.3570;ERATE=0.0127;THETA=0.0008;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 130435766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0289;AVGPOST=0.9992;RSQ=0.9890;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130435795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0285;AVGPOST=0.9991;RSQ=0.9884;ERATE=0.0004;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130435810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435903 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130435906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130435954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0282;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130436215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130436496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436608 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130436618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130436748 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0999;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130436800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130436822 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0223;AVGPOST=0.9985;RSQ=0.9757;ERATE=0.0004;THETA=0.0013;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130437005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0911;AVGPOST=0.9990;RSQ=0.9947;ERATE=0.0004;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 130437111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9676;ERATE=0.0003;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130437147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0284;AVGPOST=0.9992;RSQ=0.9900;ERATE=0.0003;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130437153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4103;AVGPOST=0.9988;RSQ=0.9984;ERATE=0.0005;THETA=0.0003;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 130437280 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4104;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 130437386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.7946;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130437445 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6195;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130437462 . CTG C 1012 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9324;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130437473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8398;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130437539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.793;LDAF=0.0061;AVGPOST=0.9962;RSQ=0.7630;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130437691 . AG A 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130437769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4955;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130437883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4892;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130437904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5888;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130438001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0268;AVGPOST=0.9973;RSQ=0.9616;ERATE=0.0011;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130438179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130438211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130438256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130438336 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0009;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130438460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0667;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0015;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130438468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130438553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130438554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130438562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130438563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0887;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130438592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0526;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 130438631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439044 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130439167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130439222 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130439261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3295;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 130439264 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439381 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130439382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439409 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130439453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130439563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439651 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3295;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0007;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 130439696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130439707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130439911 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130440262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0923;AVGPOST=0.9972;RSQ=0.9891;ERATE=0.0006;THETA=0.0003;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 130440453 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7368;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130440455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130440464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7995;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130440486 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2055;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0007;THETA=0.0004;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 130440491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0711;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 130440494 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0257;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130440589 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130440606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3177;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 130440650 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7350;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0005;THETA=0.0004;AC=1607;AN=2184 GT:DS:GL:BD 0.73580587 1 1 130440706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130440733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130440833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130441107 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0709;AVGPOST=0.9992;RSQ=0.9952;ERATE=0.0005;THETA=0.0009;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 130441122 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2029;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0004;THETA=0.0002;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 130441123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0464;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 130441134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8352;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130441213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6699;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130441279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3558;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0005;THETA=0.0003;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 130441547 . T TC 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.7015;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130441589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6284;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0006;THETA=0.0008;AC=1374;AN=2184 GT:DS:GL:BD 0.62912089 1 1 130441602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130441609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130441655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7352;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130441687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9105;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130441988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0193;AVGPOST=0.9984;RSQ=0.9673;ERATE=0.0004;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130442046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0059;AVGPOST=0.9986;RSQ=0.8955;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130442054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130442241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130442454 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5160;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130442462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0769;AVGPOST=0.9988;RSQ=0.9945;ERATE=0.0003;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130442616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2056;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0006;THETA=0.0008;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 130442628 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9731;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130442633 . TGTGATCA T 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5306;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0066;AVGPOST=0.9974;RSQ=0.8627;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130442766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0044;AVGPOST=0.9974;RSQ=0.7635;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130442778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9419;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130442819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0705;AVGPOST=0.9988;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130442820 rs35511250 TG T 44285 PASS INDEL;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.3565;AVGPOST=0.9917;RSQ=0.9871;ERATE=0.0025;THETA=0.0004;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 130442835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130442856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130442859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9891;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130442943 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.9283;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130442944 . GCTC G 291 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130443029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8328;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130443103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9510;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130443207 . G GT 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130443362 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.8042;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130443422 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7382;AVGPOST=0.9978;RSQ=0.9955;ERATE=0.0004;THETA=0.0005;AC=1615;AN=2184 GT:DS:GL:BD 0.73946887 1 1 130443461 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6289;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0005;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 130443534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 130443710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1012;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130443826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130443916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8964;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130443978 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130444093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9473;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130444114 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4641;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130444185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0046;AVGPOST=0.9977;RSQ=0.7914;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130444194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.8244;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130444198 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0422;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130444226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9439;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130444243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130444280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6463;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444340 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130444390 . CA C 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5861;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444570 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0717;AVGPOST=0.9990;RSQ=0.9943;ERATE=0.0005;THETA=0.0004;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 130444572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0863;AVGPOST=0.9929;RSQ=0.9678;ERATE=0.0008;THETA=0.0004;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 130444610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.9948;AVGPOST=0.9940;RSQ=0.5723;ERATE=0.0008;THETA=0.0010;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 130444629 rs72361933 AGT A 52 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8494;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130444707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130444773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7739;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130444906 rs60815810 AG A 196 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8068;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130444924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5179;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130444958 . GT G 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4017;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130445016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130445034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130445156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2025;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 130445205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130445211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0294;AVGPOST=0.9985;RSQ=0.9825;ERATE=0.0004;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 130445294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8207;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130445329 . C CACCTTA 4524 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9830;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130445436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130445543 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130445679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9677;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130446016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0145;AVGPOST=0.9985;RSQ=0.9542;ERATE=0.0006;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130446019 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0404;AVGPOST=0.9992;RSQ=0.9916;ERATE=0.0004;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130446046 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0178;AVGPOST=0.9956;RSQ=0.8996;ERATE=0.0007;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130446062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4285;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130446189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0106;AVGPOST=0.9993;RSQ=0.9725;ERATE=0.0005;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130446248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4098;AVGPOST=0.9962;RSQ=0.9940;ERATE=0.0004;THETA=0.0003;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 130446256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4759;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130446269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6577;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130446322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0053;AVGPOST=0.9966;RSQ=0.7512;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130446323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0760;AVGPOST=0.9991;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 130446407 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9990;RSQ=0.9703;ERATE=0.0005;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130446501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.910;LDAF=0.2571;AVGPOST=0.9465;RSQ=0.8959;ERATE=0.0070;THETA=0.0004;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 130446525 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6571;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130446529 . C CT 2382 PASS INDEL;BAVGPOST=0.940;BRSQ=0.698;LDAF=0.0859;AVGPOST=0.9615;RSQ=0.8230;ERATE=0.0005;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 130446546 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9510;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130446547 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.855;LDAF=0.0365;AVGPOST=0.9872;RSQ=0.8564;ERATE=0.0009;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 130446552 . A AC 6439 PASS INDEL;BAVGPOST=0.858;BRSQ=0.730;LDAF=0.3301;AVGPOST=0.9237;RSQ=0.8877;ERATE=0.0009;THETA=0.0004;AC=747;AN=2184 GT:DS:GL:BD 0.34203297 0 1 130446554 . CA C 171 PASS INDEL;BAVGPOST=0.924;BRSQ=0.337;LDAF=0.0631;AVGPOST=0.9270;RSQ=0.5307;ERATE=0.0060;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130446578 rs34409424 AT A 18099 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4071;AVGPOST=0.9892;RSQ=0.9834;ERATE=0.0015;THETA=0.0007;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 130446580 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9994;RSQ=0.9709;ERATE=0.0004;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130446619 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2742;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 130446626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130446697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6332;ERATE=0.0014;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130446764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9779;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130446778 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7143;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130446838 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0169;AVGPOST=0.9969;RSQ=0.9331;ERATE=0.0003;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130446850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0239;AVGPOST=0.9976;RSQ=0.9645;ERATE=0.0004;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130447195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5810;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130447266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5488;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130447276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7810;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130447337 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130447363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0060;AVGPOST=0.9965;RSQ=0.7642;ERATE=0.0007;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130447437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7117;ERATE=0.0014;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130447456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9635;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130447495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0210;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130447507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3448;AVGPOST=0.9947;RSQ=0.9907;ERATE=0.0010;THETA=0.0005;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 130447581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4108;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0005;THETA=0.0008;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 130447592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.695;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.5153;ERATE=0.0014;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130447624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3597;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130447626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7893;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130447703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130447714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6837;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130447784 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3971;AVGPOST=0.9952;RSQ=0.9921;ERATE=0.0016;THETA=0.0004;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 130447791 . C CG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4448;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130447910 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6280;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130447956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5988;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130448002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4094;AVGPOST=0.9975;RSQ=0.9965;ERATE=0.0007;THETA=0.0004;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 130448055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448201 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448224 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5281;AVGPOST=0.9914;RSQ=0.9874;ERATE=0.0005;THETA=0.0005;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 130448233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0027;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130448263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9709;ERATE=0.0004;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130448323 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9702;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130448356 . GGT G 2870 PASS INDEL;BAVGPOST=0.994;BRSQ=0.774;LDAF=0.0132;AVGPOST=0.9958;RSQ=0.8623;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130448410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9539;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130448454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130448552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0222;AVGPOST=0.9972;RSQ=0.9476;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130448565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3962;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 130448637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130448744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130448823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130448834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3840;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0008;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 130448839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4233;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0004;THETA=0.0006;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 130448868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9922;ERATE=0.0003;THETA=0.0018;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130448912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4680;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130448972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3971;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 130448992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6088;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130449006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130449023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130449034 . AAG A 41 PASS INDEL;BAVGPOST=0.992;BRSQ=0.626;LDAF=0.0157;AVGPOST=0.9821;RSQ=0.5226;ERATE=0.0061;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130449103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8839;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130449127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0205;AVGPOST=0.9987;RSQ=0.9812;ERATE=0.0003;THETA=0.0011;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130449165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9809;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130449187 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9495;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130449190 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3976;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0004;THETA=0.0043;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 130449253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8699;ERATE=0.0008;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130449379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0166;AVGPOST=0.9989;RSQ=0.9739;ERATE=0.0003;THETA=0.0058;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130449417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5899;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130449475 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0146;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130449514 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9482;ERATE=0.0003;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130449528 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0064;AVGPOST=0.9974;RSQ=0.8533;ERATE=0.0003;THETA=0.0049;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130449535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8622;ERATE=0.0003;THETA=0.0078;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130449587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7570;ERATE=0.0011;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130449677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0092;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130449684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5921;ERATE=0.0003;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130449835 . G GA 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4764;ERATE=0.0006;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130449952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130449969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130450029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8847;ERATE=0.0003;THETA=0.0066;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130450068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0183;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130450081 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0070;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130450084 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0100;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130450088 . AT A 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0008;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130450329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0481;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0064;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130450349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0104;AVGPOST=0.9971;RSQ=0.8991;ERATE=0.0005;THETA=0.0096;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130450389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9041;ERATE=0.0003;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130450393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.962;LDAF=0.3663;AVGPOST=0.9718;RSQ=0.9558;ERATE=0.0055;THETA=0.0084;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 130450453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6419;ERATE=0.0004;THETA=0.0124;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130450472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8377;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130450516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5928;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130450659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4460;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130450692 . CA C 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4899;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130450752 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130450842 . TTATTA T 201 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7399;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130450845 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4503;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130450982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.690;LDAF=0.0094;AVGPOST=0.9910;RSQ=0.6090;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130451063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.725;LDAF=0.0041;AVGPOST=0.9977;RSQ=0.8086;ERATE=0.0004;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130451089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0223;AVGPOST=0.9993;RSQ=0.9858;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130451103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9613;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130451294 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1316;AVGPOST=0.9970;RSQ=0.9903;ERATE=0.0004;THETA=0.0012;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 130451313 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130451366 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1568;AVGPOST=0.9990;RSQ=0.9964;ERATE=0.0005;THETA=0.0004;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 130451445 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9988;RSQ=0.9774;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130451538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0223;AVGPOST=0.9996;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130451540 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4999;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130451657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1279;AVGPOST=0.9954;RSQ=0.9829;ERATE=0.0005;THETA=0.0004;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 130451835 . TTTC T 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130451836 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8856;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130451896 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0037;AVGPOST=0.9936;RSQ=0.3528;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130452010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130452115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130452207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1121;AVGPOST=0.9997;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 130452213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130452217 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130452225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8963;AVGPOST=0.9985;RSQ=0.9937;ERATE=0.0004;THETA=0.0020;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 130452293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8522;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130452326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7008;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130452358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9580;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130452443 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7951;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130452539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130452635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9818;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130452745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1010;AVGPOST=0.9985;RSQ=0.9944;ERATE=0.0003;THETA=0.0010;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 130452816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9108;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130452902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130452909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5275;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130452966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130453096 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5959;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130453116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9688;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130453194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130453323 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9311;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130453352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130453398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130453404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.6661;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130453509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9033;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130453517 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130453604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1123;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 130453610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8910;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130453698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.4308;ERATE=0.0012;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130453713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.833;LDAF=0.0139;AVGPOST=0.9961;RSQ=0.8798;ERATE=0.0005;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130453935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.9014;AVGPOST=0.9925;RSQ=0.9691;ERATE=0.0011;THETA=0.0004;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 130453937 . CT C 13470 PASS INDEL;BAVGPOST=0.973;BRSQ=0.961;LDAF=0.5204;AVGPOST=0.9648;RSQ=0.9544;ERATE=0.0061;THETA=0.0002;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 130454061 rs35099930 TA T 55416 PASS INDEL;BAVGPOST=0.983;BRSQ=0.977;LDAF=0.5320;AVGPOST=0.9925;RSQ=0.9901;ERATE=0.0005;THETA=0.0007;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 130454062 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130454184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.926;LDAF=0.0364;AVGPOST=0.9968;RSQ=0.9648;ERATE=0.0003;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 130454320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130454343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130454404 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130454453 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9549;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130454570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130454573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9034;AVGPOST=0.9975;RSQ=0.9901;ERATE=0.0004;THETA=0.0004;AC=1972;AN=2184 GT:DS:GL:BD 0.90293038 1 1 130454599 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130454619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4865;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130454666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0652;AVGPOST=0.9988;RSQ=0.9910;ERATE=0.0004;THETA=0.0007;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 130454769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7958;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130454830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1133;AVGPOST=0.9978;RSQ=0.9901;ERATE=0.0006;THETA=0.0006;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 130454891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5586;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130454918 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1123;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 130454979 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4577;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130455048 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130455055 rs60504824 T TA 445 PASS INDEL;BAVGPOST=0.529;BRSQ=0.176;LDAF=0.3438;AVGPOST=0.7052;RSQ=0.4656;ERATE=0.0164;THETA=0.0004;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 130455092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.659;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.6252;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130455555 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130455604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0196;AVGPOST=0.9984;RSQ=0.9631;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130455678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9308;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130455705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.889;LDAF=0.0157;AVGPOST=0.9960;RSQ=0.8924;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130455798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9985;RSQ=0.9382;ERATE=0.0004;THETA=0.0025;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130455822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130455840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1468;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130455872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9811;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130455878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6947;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130455955 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1538;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0019;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 130455980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1466;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130456028 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.965;LDAF=0.1519;AVGPOST=0.9963;RSQ=0.9891;ERATE=0.0005;THETA=0.0005;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 130456333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.1519;AVGPOST=0.9968;RSQ=0.9909;ERATE=0.0005;THETA=0.0009;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 130456356 . GA G 814 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9876;ERATE=0.0003;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130456438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1465;AVGPOST=0.9988;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130456443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130456454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7934;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130456518 rs71168886 T TA 15920 PASS INDEL;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1451;AVGPOST=0.9966;RSQ=0.9900;ERATE=0.0005;THETA=0.0004;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 130456568 . A AT 1449 PASS INDEL;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1427;AVGPOST=0.9924;RSQ=0.9767;ERATE=0.0009;THETA=0.0008;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 130456570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130456611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1528;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0004;THETA=0.0010;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 130456629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9785;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130456676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9497;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130456707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1470;AVGPOST=0.9977;RSQ=0.9926;ERATE=0.0007;THETA=0.0003;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130456737 . T TA 394 PASS INDEL;BAVGPOST=0.997;BRSQ=0.680;LDAF=0.0081;AVGPOST=0.9923;RSQ=0.6323;ERATE=0.0014;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130456799 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0048;AVGPOST=0.9958;RSQ=0.6838;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130456800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130456869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7550;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130456930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1444;AVGPOST=0.9936;RSQ=0.9796;ERATE=0.0008;THETA=0.0008;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130456953 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0125;AVGPOST=0.9979;RSQ=0.9375;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130456968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.936;LDAF=0.2884;AVGPOST=0.9750;RSQ=0.9515;ERATE=0.0010;THETA=0.0004;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 130457016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.7893;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130457023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.611;LDAF=0.0076;AVGPOST=0.9954;RSQ=0.7780;ERATE=0.0005;THETA=0.0027;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130457042 rs71297734 A AAT 19231 PASS INDEL;BAVGPOST=0.992;BRSQ=0.974;LDAF=0.1351;AVGPOST=0.9966;RSQ=0.9887;ERATE=0.0007;THETA=0.0007;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 130457134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8720;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130457251 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130457252 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.901;LDAF=0.0144;AVGPOST=0.9968;RSQ=0.9176;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130457272 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130457278 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1545;AVGPOST=0.9966;RSQ=0.9905;ERATE=0.0009;THETA=0.0009;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 130457280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5336;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130457316 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7511;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130457331 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.858;LDAF=0.0086;AVGPOST=0.9988;RSQ=0.9383;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130457353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8475;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130457360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130457365 . TTG T 5896 PASS INDEL;BAVGPOST=0.957;BRSQ=0.802;LDAF=0.1134;AVGPOST=0.9735;RSQ=0.9118;ERATE=0.0004;THETA=0.0004;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 130457396 . G GT 225 PASS INDEL;BAVGPOST=0.979;BRSQ=0.596;LDAF=0.0195;AVGPOST=0.9875;RSQ=0.7692;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130457402 rs71571815 G GT 526 PASS INDEL;BAVGPOST=0.971;BRSQ=0.726;LDAF=0.0415;AVGPOST=0.9805;RSQ=0.8358;ERATE=0.0005;THETA=0.0004;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 130457406 . G GT 701 PASS INDEL;BAVGPOST=0.970;BRSQ=0.746;LDAF=0.0452;AVGPOST=0.9781;RSQ=0.8272;ERATE=0.0008;THETA=0.0008;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 130457410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0079;AVGPOST=0.9978;RSQ=0.8867;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130457414 . C CT 728 PASS INDEL;BAVGPOST=0.970;BRSQ=0.750;LDAF=0.0481;AVGPOST=0.9754;RSQ=0.8161;ERATE=0.0010;THETA=0.0003;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 130457417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.8988;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130457624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.966;LDAF=0.1443;AVGPOST=0.9916;RSQ=0.9743;ERATE=0.0012;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 130457636 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9113;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130457753 . T TA 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5552;ERATE=0.0005;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130457818 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6562;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130457860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9995;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130457896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5842;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130458049 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5778;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458116 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.8145;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130458123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1474;AVGPOST=0.9985;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130458209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4451;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.751;LDAF=0.0076;AVGPOST=0.9947;RSQ=0.7232;ERATE=0.0004;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130458300 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9637;ERATE=0.0005;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130458373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4907;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130458441 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0200;AVGPOST=0.9989;RSQ=0.9760;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130458512 rs5782119 C CT 68544 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4997;AVGPOST=0.9940;RSQ=0.9910;ERATE=0.0010;THETA=0.0006;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 130458584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1471;AVGPOST=0.9980;RSQ=0.9947;ERATE=0.0004;THETA=0.0003;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 130458646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4719;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.676;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6544;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130458847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1467;AVGPOST=0.9992;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130458891 rs71168887 T TG 19732 PASS INDEL;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1487;AVGPOST=0.9959;RSQ=0.9877;ERATE=0.0006;THETA=0.0003;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 130458902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9720;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130458914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130458965 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1465;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130458996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5327;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1698;AVGPOST=0.9928;RSQ=0.9825;ERATE=0.0008;THETA=0.0009;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 130459155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6634;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130459269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6330;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130459304 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7763;AVGPOST=0.9957;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 130459308 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459313 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9823;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130459406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0809;AVGPOST=0.9976;RSQ=0.9874;ERATE=0.0003;THETA=0.0006;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 130459441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459447 . GAC G 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130459520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1468;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 130459521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7417;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130459569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5955;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130459634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0153;AVGPOST=0.9994;RSQ=0.9825;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130459671 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8733;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130459742 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1888;AVGPOST=0.9962;RSQ=0.9901;ERATE=0.0004;THETA=0.0002;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 130459752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1633;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 130459768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130459791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1620;AVGPOST=0.9989;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130459792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1615;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0005;THETA=0.0003;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130459812 rs35749627 TA T 19005 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1611;AVGPOST=0.9968;RSQ=0.9910;ERATE=0.0006;THETA=0.0006;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 130459864 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1624;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130459956 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1591;AVGPOST=0.9968;RSQ=0.9924;ERATE=0.0004;THETA=0.0003;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 130460031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130460037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1583;AVGPOST=0.9950;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 130460042 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.1648;AVGPOST=0.9962;RSQ=0.9903;ERATE=0.0005;THETA=0.0005;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 130460068 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1588;AVGPOST=0.9964;RSQ=0.9907;ERATE=0.0003;THETA=0.0011;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 130460070 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.963;LDAF=0.1595;AVGPOST=0.9965;RSQ=0.9901;ERATE=0.0003;THETA=0.0002;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 130460155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7367;AVGPOST=0.9957;RSQ=0.9928;ERATE=0.0005;THETA=0.0004;AC=1609;AN=2184 GT:DS:GL:BD 0.73672163 1 1 130460161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7370;AVGPOST=0.9957;RSQ=0.9928;ERATE=0.0005;THETA=0.0003;AC=1609;AN=2184 GT:DS:GL:BD 0.73672163 1 1 130460163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1618;AVGPOST=0.9984;RSQ=0.9951;ERATE=0.0006;THETA=0.0025;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130460190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8483;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130460265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1620;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 130460278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6819;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130460296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.1616;AVGPOST=0.9959;RSQ=0.9900;ERATE=0.0005;THETA=0.0004;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130460325 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1607;AVGPOST=0.9972;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130460342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1612;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0003;THETA=0.0007;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 130460351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.893;LDAF=0.0509;AVGPOST=0.9886;RSQ=0.9120;ERATE=0.0003;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 130460353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130460366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0102;AVGPOST=0.9968;RSQ=0.8688;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130460372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130460382 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130460444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1627;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0004;THETA=0.0022;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 130460565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130460610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1626;AVGPOST=0.9987;RSQ=0.9961;ERATE=0.0005;THETA=0.0004;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 130460615 rs71706454 CAACATGGTGAA C 25392 PASS INDEL;BAVGPOST=0.844;BRSQ=0.779;LDAF=0.3936;AVGPOST=0.8453;RSQ=0.8087;ERATE=0.0160;THETA=0.0033;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 130460708 rs68016256 A AG 24 PASS INDEL;BAVGPOST=0.971;BRSQ=0.260;LDAF=0.0435;AVGPOST=0.9367;RSQ=0.4253;ERATE=0.0065;THETA=0.0045;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130460718 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9203;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130460775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.6974;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130460863 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7087;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130461037 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9525;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130461063 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0118;AVGPOST=0.9991;RSQ=0.9678;ERATE=0.0003;THETA=0.0036;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130461106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130461130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8672;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130461367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0072;AVGPOST=0.9970;RSQ=0.8335;ERATE=0.0008;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130461368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9261;ERATE=0.0003;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130461719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0530;AVGPOST=0.9985;RSQ=0.9897;ERATE=0.0004;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 130461727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8745;ERATE=0.0004;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130461806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130461944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3046;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0005;THETA=0.0011;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 130461965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2797;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0005;THETA=0.0010;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 130462075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8958;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130462292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7094;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130462396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0076;AVGPOST=0.9969;RSQ=0.8219;ERATE=0.0007;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130462519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.951;LDAF=0.1074;AVGPOST=0.9932;RSQ=0.9729;ERATE=0.0009;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 130462524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0040;AVGPOST=0.9956;RSQ=0.5591;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130462575 . AAAT A 15 PASS INDEL;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0082;AVGPOST=0.9887;RSQ=0.4879;ERATE=0.0020;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130462575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.738;LDAF=0.0054;AVGPOST=0.9977;RSQ=0.8117;ERATE=0.0005;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130462578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130462722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0022;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130462728 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.0902;AVGPOST=0.9952;RSQ=0.9789;ERATE=0.0005;THETA=0.0009;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 130462729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8019;ERATE=0.0004;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130462866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0041;AVGPOST=0.9961;RSQ=0.6809;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130462886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130463031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130463113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1526;AVGPOST=0.9966;RSQ=0.9915;ERATE=0.0003;THETA=0.0063;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 130463182 rs10535492 TTTTTA T 52175 PASS INDEL;BAVGPOST=0.965;BRSQ=0.483;LDAF=0.9369;AVGPOST=0.9141;RSQ=0.3902;ERATE=0.0152;THETA=0.0006;AC=2131;AN=2184 GT:DS:GL:BD 0.97573262 1 1 130463250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.745;LDAF=0.0050;AVGPOST=0.9949;RSQ=0.5930;ERATE=0.0007;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130463286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130463445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5415;ERATE=0.0005;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130463452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1060;AVGPOST=0.9857;RSQ=0.9467;ERATE=0.0018;THETA=0.0007;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 130463470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0563;AVGPOST=0.9926;RSQ=0.9510;ERATE=0.0006;THETA=0.0016;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 130463487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0054;AVGPOST=0.9981;RSQ=0.8607;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130463543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8311;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130463586 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130463778 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2752;AVGPOST=0.9937;RSQ=0.9913;ERATE=0.0006;THETA=0.0012;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 130463830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0059;AVGPOST=0.9977;RSQ=0.8455;ERATE=0.0004;THETA=0.0024;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130464013 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7810;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130464014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9598;ERATE=0.0003;THETA=0.0049;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130464032 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7944;ERATE=0.0005;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130464217 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7679;ERATE=0.0005;THETA=0.0062;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130464219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5207;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130464230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0100;AVGPOST=0.9991;RSQ=0.9604;ERATE=0.0004;THETA=0.0040;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130464336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130464353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130464361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.2533;AVGPOST=0.9888;RSQ=0.9826;ERATE=0.0008;THETA=0.0071;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 130464528 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0201;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130464567 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7444;ERATE=0.0003;THETA=0.0147;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130464684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.1066;AVGPOST=0.9919;RSQ=0.9668;ERATE=0.0004;THETA=0.0069;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 130464763 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0196;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130464850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.9040;ERATE=0.0004;THETA=0.0218;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130464860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.869;LDAF=0.0090;AVGPOST=0.9970;RSQ=0.8676;ERATE=0.0004;THETA=0.0198;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130464888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6467;ERATE=0.0003;THETA=0.0228;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130465027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8458;ERATE=0.0012;THETA=0.0219;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130465128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7648;ERATE=0.0014;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130465204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7852;ERATE=0.0004;THETA=0.0247;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130465272 . C CT 7 PASS INDEL;BAVGPOST=0.998;BRSQ=0.473;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0204;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130465386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6669;ERATE=0.0005;THETA=0.0241;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130465419 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8067;ERATE=0.0006;THETA=0.0117;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130465451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0334;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130465577 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0003;THETA=0.0096;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130465656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.897;LDAF=0.0722;AVGPOST=0.9815;RSQ=0.8914;ERATE=0.0048;THETA=0.0232;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130465669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0321;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130465702 rs57991451 ATAATAATAG A 9501 PASS INDEL;BAVGPOST=0.789;BRSQ=0.670;LDAF=0.4659;AVGPOST=0.7800;RSQ=0.6684;ERATE=0.0204;THETA=0.0005;AC=1052;AN=2184 GT:DS:GL:BD 0.48168498 0 1 130465998 rs57991451 ATAATAG A 12030 PASS INDEL;BAVGPOST=0.810;BRSQ=0.696;LDAF=0.5247;AVGPOST=0.8129;RSQ=0.7225;ERATE=0.0153;THETA=0.0007;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 130466001 rs57991451 A AAT 1802 PASS INDEL;BAVGPOST=0.857;BRSQ=0.667;LDAF=0.2651;AVGPOST=0.8449;RSQ=0.7117;ERATE=0.0097;THETA=0.0007;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 130466003 rs57991451 ATAG A 13492 PASS INDEL;BAVGPOST=0.848;BRSQ=0.740;LDAF=0.5902;AVGPOST=0.8587;RSQ=0.7815;ERATE=0.0158;THETA=0.0030;AC=1308;AN=2184 GT:DS:GL:BD 0.59890109 1 1 130466004 . TAA T 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0061;AVGPOST=0.9919;RSQ=0.4817;ERATE=0.0009;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130466038 . AAT A 226 PASS INDEL;BAVGPOST=0.910;BRSQ=0.236;LDAF=0.1336;AVGPOST=0.8069;RSQ=0.3232;ERATE=0.0205;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 130466039 . AAT A 308 PASS INDEL;BAVGPOST=0.938;BRSQ=0.316;LDAF=0.1371;AVGPOST=0.8324;RSQ=0.4675;ERATE=0.0088;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 130466042 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.818;LDAF=0.2330;AVGPOST=0.8944;RSQ=0.7695;ERATE=0.0207;THETA=0.0005;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 130466044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8719;AVGPOST=0.9978;RSQ=0.9922;ERATE=0.0005;THETA=0.0006;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 130466090 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7564;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130466103 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5444;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130466106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3465;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130466181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0136;AVGPOST=0.9984;RSQ=0.9578;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130466321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.5820;AVGPOST=0.9876;RSQ=0.9807;ERATE=0.0029;THETA=0.0005;AC=1275;AN=2184 GT:DS:GL:BD 0.58379120 1 1 130466345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6490;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130466346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7125;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130466383 . T TAACA 2145 PASS INDEL;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0095;AVGPOST=0.9990;RSQ=0.9564;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130466509 . CA C 1025 PASS INDEL;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9058;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130466622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2846;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0006;THETA=0.0013;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 130466710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130466924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0212;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0004;THETA=0.0025;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130466986 . ATGTT A 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4362;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130467045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5539;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130467082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5436;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130467179 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7177;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130467319 . ATAAG A 1143 PASS INDEL;BAVGPOST=0.995;BRSQ=0.821;LDAF=0.0127;AVGPOST=0.9982;RSQ=0.9366;ERATE=0.0005;THETA=0.0015;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130467385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1003;AVGPOST=0.9982;RSQ=0.9912;ERATE=0.0005;THETA=0.0003;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 130467410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6819;ERATE=0.0005;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130467430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6587;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130467466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0065;AVGPOST=0.9954;RSQ=0.7284;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130467554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5883;AVGPOST=0.9939;RSQ=0.9911;ERATE=0.0009;THETA=0.0005;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 130467568 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0992;AVGPOST=0.9981;RSQ=0.9924;ERATE=0.0003;THETA=0.0008;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 130467579 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7858;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130467614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130467636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0217;AVGPOST=0.9994;RSQ=0.9869;ERATE=0.0003;THETA=0.0013;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130467678 rs66493041 A AC 12335 PASS INDEL;BAVGPOST=0.907;BRSQ=0.784;LDAF=0.3160;AVGPOST=0.7939;RSQ=0.6403;ERATE=0.0376;THETA=0.0002;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 130467799 . C CA 607 PASS INDEL;BAVGPOST=0.769;BRSQ=0.356;LDAF=0.2909;AVGPOST=0.7202;RSQ=0.4190;ERATE=0.0202;THETA=0.0005;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 130467803 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6644;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130467867 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2148;AVGPOST=0.9962;RSQ=0.9921;ERATE=0.0005;THETA=0.0002;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 130467904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0556;AVGPOST=0.9986;RSQ=0.9917;ERATE=0.0003;THETA=0.0039;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130467916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.8678;AVGPOST=0.9947;RSQ=0.9853;ERATE=0.0005;THETA=0.0002;AC=1898;AN=2184 GT:DS:GL:BD 0.86904764 1 1 130467997 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130468072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5882;AVGPOST=0.9913;RSQ=0.9864;ERATE=0.0022;THETA=0.0003;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 130468220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0044;AVGPOST=0.9950;RSQ=0.5283;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130468269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2830;AVGPOST=0.9972;RSQ=0.9946;ERATE=0.0005;THETA=0.0051;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 130468307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8712;AVGPOST=0.9981;RSQ=0.9948;ERATE=0.0004;THETA=0.0020;AC=1902;AN=2184 GT:DS:GL:BD 0.87087911 1 1 130468341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3320;AVGPOST=0.9971;RSQ=0.9950;ERATE=0.0005;THETA=0.0007;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 130468377 . A AT 19 PASS INDEL;BAVGPOST=0.997;BRSQ=0.522;LDAF=0.0066;AVGPOST=0.9939;RSQ=0.6420;ERATE=0.0014;THETA=0.0064;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130468461 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.6700;AVGPOST=0.9941;RSQ=0.9890;ERATE=0.0011;THETA=0.0002;AC=1463;AN=2184 GT:DS:GL:BD 0.66987181 1 1 130468521 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8703;AVGPOST=0.9967;RSQ=0.9900;ERATE=0.0005;THETA=0.0102;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 130468525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.970;LDAF=0.2827;AVGPOST=0.9929;RSQ=0.9863;ERATE=0.0006;THETA=0.0004;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 130468561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.970;LDAF=0.2749;AVGPOST=0.9927;RSQ=0.9854;ERATE=0.0004;THETA=0.0028;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 130468576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.959;LDAF=0.1357;AVGPOST=0.9916;RSQ=0.9751;ERATE=0.0016;THETA=0.0063;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 130468603 rs61335602 CTG C 11213 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0552;AVGPOST=0.9981;RSQ=0.9876;ERATE=0.0005;THETA=0.0002;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 130468641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.966;LDAF=0.1089;AVGPOST=0.9969;RSQ=0.9857;ERATE=0.0004;THETA=0.0036;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 130468658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.514;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130468753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6194;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130468771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8694;AVGPOST=0.9980;RSQ=0.9937;ERATE=0.0005;THETA=0.0008;AC=1900;AN=2184 GT:DS:GL:BD 0.86996335 1 1 130468892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0229;AVGPOST=0.9989;RSQ=0.9803;ERATE=0.0004;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130468913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4205;ERATE=0.0004;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130468961 . AGT A 50 PASS INDEL;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4282;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130469038 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.935;LDAF=0.8488;AVGPOST=0.9769;RSQ=0.9467;ERATE=0.0005;THETA=0.0012;AC=1861;AN=2184 GT:DS:GL:BD 0.85210621 1 1 130469106 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.938;LDAF=0.8519;AVGPOST=0.9775;RSQ=0.9441;ERATE=0.0004;THETA=0.0005;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 130469107 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7013;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130469194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8095;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130469339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5581;ERATE=0.0007;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130469560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7437;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130469599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5944;AVGPOST=0.9971;RSQ=0.9953;ERATE=0.0005;THETA=0.0012;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 130469647 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.954;LDAF=0.1357;AVGPOST=0.9865;RSQ=0.9582;ERATE=0.0004;THETA=0.0012;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 130469649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0082;AVGPOST=0.9977;RSQ=0.8876;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130469679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130469690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130469745 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.5885;AVGPOST=0.9936;RSQ=0.9911;ERATE=0.0005;THETA=0.0004;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 130469877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130470014 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6563;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130470100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5981;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130470147 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5104;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130470370 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1658;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0005;THETA=0.0005;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 130470412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130470522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0086;AVGPOST=0.9985;RSQ=0.9356;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130470538 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130470564 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.8702;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0004;THETA=0.0007;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 130470617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5927;AVGPOST=0.9936;RSQ=0.9913;ERATE=0.0004;THETA=0.0012;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 130470667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1094;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 130470780 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.973;LDAF=0.0986;AVGPOST=0.9978;RSQ=0.9896;ERATE=0.0005;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 130470844 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.961;LDAF=0.6814;AVGPOST=0.9757;RSQ=0.9620;ERATE=0.0022;THETA=0.0004;AC=1493;AN=2184 GT:DS:GL:BD 0.68360806 1 1 130470884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7027;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130470928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1934;AVGPOST=0.9971;RSQ=0.9936;ERATE=0.0004;THETA=0.0007;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 130470956 rs74677809 C CA 52549 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4724;AVGPOST=0.9953;RSQ=0.9931;ERATE=0.0006;THETA=0.0008;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 130471070 . A AC 2761 PASS INDEL;BAVGPOST=0.868;BRSQ=0.765;LDAF=0.3364;AVGPOST=0.8908;RSQ=0.8395;ERATE=0.0012;THETA=0.0002;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 130471076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4852;ERATE=0.0004;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130471136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7859;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130471140 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130471170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4731;AVGPOST=0.9979;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 130471259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.861;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9731;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130471286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130471365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8831;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130471476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4091;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0008;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 130471510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130471623 . A AC 82 PASS INDEL;BAVGPOST=0.970;BRSQ=0.308;LDAF=0.0246;AVGPOST=0.9713;RSQ=0.5209;ERATE=0.0017;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130471829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7478;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130471860 . AT A 264 PASS INDEL;BAVGPOST=0.991;BRSQ=0.598;LDAF=0.0150;AVGPOST=0.9875;RSQ=0.7005;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130471913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0398;AVGPOST=0.9982;RSQ=0.9825;ERATE=0.0005;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130471968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5322;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130472284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130472432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6288;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130472508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130472571 . TTTC T 300 PASS INDEL;BAVGPOST=0.997;BRSQ=0.654;LDAF=0.0066;AVGPOST=0.9948;RSQ=0.6853;ERATE=0.0015;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130472665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6043;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130472817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8874;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130472904 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.645;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8323;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130472921 . G GCC 364 PASS INDEL;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9284;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130472968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0142;AVGPOST=0.9992;RSQ=0.9761;ERATE=0.0003;THETA=0.0019;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130473179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0068;AVGPOST=0.9966;RSQ=0.8016;ERATE=0.0007;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130473301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8915;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130473364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130473366 . AAC A 2236 PASS INDEL;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0180;AVGPOST=0.9940;RSQ=0.8790;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130473496 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.6043;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130473506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3046;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 130473536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7798;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130473549 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0386;AVGPOST=0.9982;RSQ=0.9829;ERATE=0.0004;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130473677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5875;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130473723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4704;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0007;THETA=0.0007;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 130473743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6992;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130473803 . ATTCT A 440 PASS INDEL;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130473819 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.7980;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130474094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130474101 . G GT 30549 PASS INDEL;BAVGPOST=0.985;BRSQ=0.936;LDAF=0.8691;AVGPOST=0.9795;RSQ=0.9336;ERATE=0.0021;THETA=0.0004;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 130474128 rs34114650 T TC 90292 PASS INDEL;BAVGPOST=0.989;BRSQ=0.962;LDAF=0.8778;AVGPOST=0.9934;RSQ=0.9749;ERATE=0.0007;THETA=0.0017;AC=1920;AN=2184 GT:DS:GL:BD 0.87912089 1 1 130474131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.467;LDAF=0.0143;AVGPOST=0.9813;RSQ=0.5115;ERATE=0.0008;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130474205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0384;AVGPOST=0.9977;RSQ=0.9743;ERATE=0.0005;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130474234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8180;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130474408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4850;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130474423 rs71926601 AT A 9877 PASS INDEL;BAVGPOST=0.828;BRSQ=0.421;LDAF=0.7874;AVGPOST=0.7721;RSQ=0.4631;ERATE=0.0237;THETA=0.0014;AC=1892;AN=2184 GT:DS:GL:BD 0.86630034 1 1 130474463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.545;LDAF=0.0091;AVGPOST=0.9921;RSQ=0.6489;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130474482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6532;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130474604 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0763;AVGPOST=0.9989;RSQ=0.9926;ERATE=0.0004;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 130474605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130474911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130475061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130475096 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5825;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130475144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.966;LDAF=0.2498;AVGPOST=0.9898;RSQ=0.9800;ERATE=0.0008;THETA=0.0006;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 130475199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5974;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130475219 . CT C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4938;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130475238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8308;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130475361 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0398;AVGPOST=0.9975;RSQ=0.9728;ERATE=0.0005;THETA=0.0008;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 130475600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7911;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130475633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130475703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130475976 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0082;AVGPOST=0.9988;RSQ=0.9343;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130476023 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0721;AVGPOST=0.9976;RSQ=0.9882;ERATE=0.0003;THETA=0.0011;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 130476052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.962;LDAF=0.1055;AVGPOST=0.9915;RSQ=0.9690;ERATE=0.0006;THETA=0.0004;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 130476154 . TG T 2832 PASS INDEL;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0470;AVGPOST=0.9979;RSQ=0.9823;ERATE=0.0004;THETA=0.0013;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 130476200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.980;LDAF=0.5020;AVGPOST=0.9799;RSQ=0.9751;ERATE=0.0005;THETA=0.0043;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 130476218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0702;AVGPOST=0.9945;RSQ=0.9708;ERATE=0.0006;THETA=0.0020;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 130476373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1061;AVGPOST=0.9958;RSQ=0.9849;ERATE=0.0003;THETA=0.0002;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 130476374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0129;AVGPOST=0.9977;RSQ=0.9289;ERATE=0.0015;THETA=0.0038;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130476388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130476389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130476498 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130476549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0006;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130476571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8228;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130476605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7383;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130476644 . CAG C 325 PASS INDEL;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8475;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130476760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130476815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0497;AVGPOST=0.9978;RSQ=0.9837;ERATE=0.0004;THETA=0.0006;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 130476888 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130476966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130476989 . CT C 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130477067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9735;ERATE=0.0003;THETA=0.0048;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130477247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1079;AVGPOST=0.9961;RSQ=0.9856;ERATE=0.0004;THETA=0.0006;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 130477290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130477383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0004;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130477439 . GA G 246 PASS INDEL;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6914;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130477455 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0078;AVGPOST=0.9981;RSQ=0.9112;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130477463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9761;ERATE=0.0003;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130477526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130477527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130477584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130477630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9424;ERATE=0.0005;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130477761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6134;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130477823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0101;AVGPOST=0.9959;RSQ=0.8439;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130477956 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0506;AVGPOST=0.9969;RSQ=0.9756;ERATE=0.0003;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 130477960 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8248;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130477988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0422;AVGPOST=0.9946;RSQ=0.9582;ERATE=0.0005;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130478008 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5552;ERATE=0.0006;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130478018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0140;AVGPOST=0.9969;RSQ=0.9140;ERATE=0.0003;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130478196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0485;AVGPOST=0.9981;RSQ=0.9876;ERATE=0.0004;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130478277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8376;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130478318 . CTGT C 222 PASS INDEL;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7974;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130478397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0415;AVGPOST=0.9970;RSQ=0.9734;ERATE=0.0004;THETA=0.0009;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130478465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.864;LDAF=0.0245;AVGPOST=0.9903;RSQ=0.8527;ERATE=0.0004;THETA=0.0018;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130478477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.6185;ERATE=0.0003;THETA=0.0073;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130478653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0500;AVGPOST=0.9962;RSQ=0.9701;ERATE=0.0007;THETA=0.0066;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 130478689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9083;ERATE=0.0004;THETA=0.0021;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130478742 . AT A 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130478783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5990;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130478801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0023;AVGPOST=0.9962;RSQ=0.2903;ERATE=0.0009;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130478921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8482;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130478925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0130;AVGPOST=0.9975;RSQ=0.9254;ERATE=0.0006;THETA=0.0046;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130478969 . CT C 56 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4545;ERATE=0.0006;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130479020 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0181;AVGPOST=0.9983;RSQ=0.9646;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130479109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.928;LDAF=0.0505;AVGPOST=0.9879;RSQ=0.8949;ERATE=0.0005;THETA=0.0029;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 130479128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.937;LDAF=0.0885;AVGPOST=0.9880;RSQ=0.9447;ERATE=0.0016;THETA=0.0011;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 130479139 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.904;LDAF=0.0251;AVGPOST=0.9892;RSQ=0.8238;ERATE=0.0041;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130479178 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0074;AVGPOST=0.9963;RSQ=0.7857;ERATE=0.0008;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130479193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.7937;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130479206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130479248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.951;LDAF=0.1913;AVGPOST=0.9792;RSQ=0.9547;ERATE=0.0085;THETA=0.0025;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 130479257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130479320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.0824;AVGPOST=0.9963;RSQ=0.9841;ERATE=0.0003;THETA=0.0030;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 130479325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6765;ERATE=0.0003;THETA=0.0069;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130479338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0108;AVGPOST=0.9990;RSQ=0.9653;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130479343 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9363;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130479345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8594;ERATE=0.0007;THETA=0.0057;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130479429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9989;RSQ=0.9712;ERATE=0.0003;THETA=0.0014;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130479459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130479530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7521;ERATE=0.0010;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130479612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130479614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9286;ERATE=0.0004;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130479690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130479712 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6902;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130479749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0135;AVGPOST=0.9986;RSQ=0.9577;ERATE=0.0004;THETA=0.0069;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130479768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9851;ERATE=0.0004;THETA=0.0023;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130479789 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7806;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130480011 rs35732933 C CT 38148 PASS INDEL;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.3408;AVGPOST=0.9839;RSQ=0.9754;ERATE=0.0006;THETA=0.0002;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 130480017 . T TG 1905 PASS INDEL;BAVGPOST=0.907;BRSQ=0.797;LDAF=0.2758;AVGPOST=0.9239;RSQ=0.8714;ERATE=0.0012;THETA=0.0020;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 130480019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0132;AVGPOST=0.9992;RSQ=0.9745;ERATE=0.0004;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130480036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0005;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.943;LDAF=0.0146;AVGPOST=0.9983;RSQ=0.9587;ERATE=0.0003;THETA=0.0053;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130480080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.480;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4568;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0137;AVGPOST=0.9985;RSQ=0.9544;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130480271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.850;LDAF=0.1955;AVGPOST=0.9510;RSQ=0.8958;ERATE=0.0010;THETA=0.0018;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 130480308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3399;AVGPOST=0.9916;RSQ=0.9860;ERATE=0.0006;THETA=0.0004;AC=744;AN=2184 GT:DS:GL:BD 0.34065935 0 1 130480309 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480461 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.869;LDAF=0.0148;AVGPOST=0.9956;RSQ=0.8744;ERATE=0.0005;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130480484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.850;LDAF=0.0321;AVGPOST=0.9822;RSQ=0.8071;ERATE=0.0014;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130480520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4147;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.893;LDAF=0.0824;AVGPOST=0.9881;RSQ=0.9435;ERATE=0.0008;THETA=0.0005;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 130480659 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.904;LDAF=0.0609;AVGPOST=0.9859;RSQ=0.8994;ERATE=0.0007;THETA=0.0007;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 130480660 rs34761245 A AT 1286 PASS INDEL;BAVGPOST=0.646;BRSQ=0.318;LDAF=0.4281;AVGPOST=0.6467;RSQ=0.3892;ERATE=0.0370;THETA=0.0008;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 130480663 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.454;LDAF=0.0098;AVGPOST=0.9866;RSQ=0.4448;ERATE=0.0007;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130480722 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8941;ERATE=0.0004;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130480818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5062;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130480932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0063;AVGPOST=0.9987;RSQ=0.9369;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130480933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.6018;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130481027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130481029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0083;AVGPOST=0.9977;RSQ=0.8833;ERATE=0.0007;THETA=0.0020;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130481151 . CTT C 217 PASS INDEL;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130481167 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0127;AVGPOST=0.9991;RSQ=0.9738;ERATE=0.0004;THETA=0.0019;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130481212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1078;AVGPOST=0.9953;RSQ=0.9838;ERATE=0.0004;THETA=0.0044;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 130481234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.7937;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130481282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5522;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130481418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4905;ERATE=0.0005;THETA=0.0118;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130481502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8371;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130481637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0254;AVGPOST=0.9981;RSQ=0.9694;ERATE=0.0013;THETA=0.0035;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130481760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0344;AVGPOST=0.9989;RSQ=0.9879;ERATE=0.0004;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 130481767 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7270;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130481870 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8781;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130481888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.942;LDAF=0.0248;AVGPOST=0.9948;RSQ=0.9065;ERATE=0.0005;THETA=0.0033;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130481904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.7860;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130482067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130482144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.7890;ERATE=0.0031;THETA=0.0044;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130482266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0234;AVGPOST=0.9989;RSQ=0.9842;ERATE=0.0004;THETA=0.0031;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 130482321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7405;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130482448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130482464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130482513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130482541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130482570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130482580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6992;ERATE=0.0004;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130482638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0135;AVGPOST=0.9972;RSQ=0.9261;ERATE=0.0004;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130482639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0264;AVGPOST=0.9976;RSQ=0.9646;ERATE=0.0005;THETA=0.0023;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130482665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1212;AVGPOST=0.9968;RSQ=0.9901;ERATE=0.0006;THETA=0.0006;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 130482704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.846;LDAF=0.0136;AVGPOST=0.9954;RSQ=0.8517;ERATE=0.0004;THETA=0.0016;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130482709 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5755;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130482858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5277;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130482862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130482911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0056;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130482956 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.800;LDAF=0.0083;AVGPOST=0.9950;RSQ=0.7532;ERATE=0.0005;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130483018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.557;LDAF=0.0101;AVGPOST=0.9885;RSQ=0.5315;ERATE=0.0029;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130483036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0092;AVGPOST=0.9965;RSQ=0.8401;ERATE=0.0006;THETA=0.0037;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130483037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.3803;ERATE=0.0006;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130483050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1218;AVGPOST=0.9932;RSQ=0.9807;ERATE=0.0008;THETA=0.0014;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 130483078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=0.9976;RSQ=0.8195;ERATE=0.0006;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130483112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1242;AVGPOST=0.9872;RSQ=0.9633;ERATE=0.0021;THETA=0.0023;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 130483219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1199;AVGPOST=0.9943;RSQ=0.9831;ERATE=0.0010;THETA=0.0021;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 130483250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5960;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130483255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0034;AVGPOST=0.9967;RSQ=0.5986;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130483271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0167;AVGPOST=0.9985;RSQ=0.9645;ERATE=0.0004;THETA=0.0045;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130483312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130483344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130483435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0076;AVGPOST=0.9973;RSQ=0.8462;ERATE=0.0005;THETA=0.0032;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130483608 . AAAAAAG A 11536 PASS INDEL;BAVGPOST=0.993;BRSQ=0.969;LDAF=0.1013;AVGPOST=0.9848;RSQ=0.9481;ERATE=0.0018;THETA=0.0010;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 130483662 . AACTT A 428 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8782;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130483694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0072;AVGPOST=0.9978;RSQ=0.8726;ERATE=0.0004;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130483704 rs113866242 CG C 418 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9254;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130483784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130483838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130483839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9260;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130483870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9392;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130483886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6828;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130483901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4758;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.814;LDAF=0.0130;AVGPOST=0.9949;RSQ=0.8397;ERATE=0.0006;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130484070 . ACT A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4508;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6199;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130484167 . C CT 249 PASS INDEL;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.6201;ERATE=0.0005;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130484181 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0852;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 130484273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0859;AVGPOST=0.9983;RSQ=0.9916;ERATE=0.0007;THETA=0.0019;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 130484334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0506;AVGPOST=0.9990;RSQ=0.9913;ERATE=0.0005;THETA=0.0022;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 130484337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2018;AVGPOST=0.9840;RSQ=0.9690;ERATE=0.0015;THETA=0.0013;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 130484408 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.611;LDAF=0.0028;AVGPOST=0.9964;RSQ=0.4780;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130484409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0119;AVGPOST=0.9968;RSQ=0.8924;ERATE=0.0007;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130484440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4964;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0444;AVGPOST=0.9976;RSQ=0.9773;ERATE=0.0005;THETA=0.0015;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 130484479 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5023;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0351;AVGPOST=0.9990;RSQ=0.9897;ERATE=0.0005;THETA=0.0010;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 130484527 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0030;AVGPOST=0.9957;RSQ=0.4428;ERATE=0.0007;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130484546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.913;LDAF=0.0315;AVGPOST=0.9907;RSQ=0.8883;ERATE=0.0014;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130484560 . G GA 31 PASS INDEL;BAVGPOST=0.986;BRSQ=0.377;LDAF=0.0226;AVGPOST=0.9689;RSQ=0.4522;ERATE=0.0062;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130484616 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484663 rs60667523 T TGG 8908 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0366;AVGPOST=0.9979;RSQ=0.9777;ERATE=0.0005;THETA=0.0010;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130484663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1015;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 130484711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484728 . C CT 358 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8296;ERATE=0.0004;THETA=0.0046;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130484785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2357;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0005;THETA=0.0005;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 130484871 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8320;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130484927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2488;AVGPOST=0.9959;RSQ=0.9939;ERATE=0.0014;THETA=0.0038;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 130484929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0004;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130484952 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0179;AVGPOST=0.9980;RSQ=0.9604;ERATE=0.0004;THETA=0.0013;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130484954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7130;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130484987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0350;AVGPOST=0.9994;RSQ=0.9930;ERATE=0.0003;THETA=0.0032;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130485085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0817;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 130485120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130485145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8266;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130485157 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9892;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130485171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9052;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130485206 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2451;AVGPOST=0.9963;RSQ=0.9945;ERATE=0.0007;THETA=0.0006;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 130485335 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485385 . TGA T 144 PASS INDEL;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130485480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7616;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130485524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0211;AVGPOST=0.9980;RSQ=0.9622;ERATE=0.0010;THETA=0.0013;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130485531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.1793;AVGPOST=0.9809;RSQ=0.9552;ERATE=0.0007;THETA=0.0010;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 130485536 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7533;ERATE=0.0020;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130485563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485606 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9537;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130485611 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0146;AVGPOST=0.9990;RSQ=0.9768;ERATE=0.0004;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130485623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485639 rs57632321 G GGA 1274 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0163;AVGPOST=0.9969;RSQ=0.9303;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130485730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130485867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9202;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130485908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2436;AVGPOST=0.9953;RSQ=0.9931;ERATE=0.0008;THETA=0.0013;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 130485912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6890;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130486049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0350;AVGPOST=0.9994;RSQ=0.9926;ERATE=0.0003;THETA=0.0014;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130486125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.5656;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130486126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130486146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.958;LDAF=0.0408;AVGPOST=0.9976;RSQ=0.9774;ERATE=0.0004;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 130486429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.643;LDAF=0.0077;AVGPOST=0.9930;RSQ=0.6661;ERATE=0.0006;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130486467 . T TCCC 131 PASS INDEL;BAVGPOST=0.985;BRSQ=0.268;LDAF=0.0231;AVGPOST=0.9697;RSQ=0.4451;ERATE=0.0027;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130486528 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9803;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130486698 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.916;LDAF=0.1907;AVGPOST=0.9432;RSQ=0.8696;ERATE=0.0166;THETA=0.0004;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 130486715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.511;LDAF=0.0904;AVGPOST=0.9410;RSQ=0.7408;ERATE=0.0014;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 130486940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.375;LDAF=0.0070;AVGPOST=0.9880;RSQ=0.3476;ERATE=0.0017;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130487030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7886;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130487031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.925;LDAF=0.0682;AVGPOST=0.9912;RSQ=0.9500;ERATE=0.0012;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 130487049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1386;AVGPOST=0.9980;RSQ=0.9933;ERATE=0.0004;THETA=0.0004;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 130487153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0267;AVGPOST=0.9994;RSQ=0.9901;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130487253 rs10664591 G GGGGA 2499 PASS INDEL;BAVGPOST=0.783;BRSQ=0.362;LDAF=0.1873;AVGPOST=0.8471;RSQ=0.6396;ERATE=0.0068;THETA=0.0001;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 130487351 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.847;BRSQ=0.721;LDAF=0.3331;AVGPOST=0.8605;RSQ=0.7779;ERATE=0.0108;THETA=0.0005;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 130487371 . TATA T 8841 PASS INDEL;BAVGPOST=0.881;BRSQ=0.782;LDAF=0.4009;AVGPOST=0.8394;RSQ=0.7486;ERATE=0.0213;THETA=0.0003;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 130487481 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9907;AVGPOST=0.9997;RSQ=0.9834;ERATE=0.0003;THETA=0.0003;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 130487813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130487858 . C CT 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7115;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130487908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130487944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8191;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130488036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0026;AVGPOST=0.9971;RSQ=0.5037;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130488041 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0420;AVGPOST=0.9986;RSQ=0.9888;ERATE=0.0003;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130488112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5053;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130488133 . CA C 38 PASS INDEL;BAVGPOST=0.993;BRSQ=0.664;LDAF=0.0109;AVGPOST=0.9912;RSQ=0.7064;ERATE=0.0012;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130488213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9977;RSQ=0.9595;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130488239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.530;LDAF=0.9649;AVGPOST=0.9615;RSQ=0.5799;ERATE=0.0045;THETA=0.0010;AC=2130;AN=2184 GT:DS:GL:BD 0.97527474 1 1 130488241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0736;AVGPOST=0.9930;RSQ=0.9648;ERATE=0.0004;THETA=0.0006;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 130488246 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0415;AVGPOST=0.9989;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130488284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0113;AVGPOST=0.9991;RSQ=0.9631;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130488291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7248;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130488294 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0098;AVGPOST=0.9973;RSQ=0.8857;ERATE=0.0009;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130488350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7812;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130488416 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4113;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 130488450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.7410;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130488517 . GC G 306 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.9038;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130488616 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130488726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130488836 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7958;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130488840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2044;AVGPOST=0.9968;RSQ=0.9927;ERATE=0.0005;THETA=0.0006;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 130488870 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130489040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130489150 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130489170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.6646;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130489214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6442;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130489444 . CT C 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.6120;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130489483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8587;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130489607 . CAA C 471 PASS INDEL;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8003;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130489800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8911;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130489836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7960;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130489860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9822;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130489927 . GT G 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5736;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130489989 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130490022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0397;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0001;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 130490062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0740;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 130490171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.6157;ERATE=0.0009;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130490298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0054;AVGPOST=0.9982;RSQ=0.8615;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130490314 . G GA 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5111;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130490355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0038;AVGPOST=0.9968;RSQ=0.6899;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130490439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0597;AVGPOST=0.9985;RSQ=0.9898;ERATE=0.0005;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130490459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.648;LDAF=0.0041;AVGPOST=0.9963;RSQ=0.6335;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130490479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6049;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130490518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3064;AVGPOST=0.9967;RSQ=0.9935;ERATE=0.0005;THETA=0.0003;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 130490523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0306;AVGPOST=0.9989;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130490555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6484;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130490654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9548;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130490685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5407;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130490759 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9191;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130490829 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3776;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0005;THETA=0.0002;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 130490848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130490850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130490891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5700;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 130490936 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130490969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4579;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130491071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130491094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130491165 . GTTTA G 138 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5963;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130491338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4123;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 130491347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130491427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130491497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.893;LDAF=0.1832;AVGPOST=0.9761;RSQ=0.9296;ERATE=0.0007;THETA=0.0003;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 130491699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.826;LDAF=0.2983;AVGPOST=0.8984;RSQ=0.7943;ERATE=0.0250;THETA=0.0003;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 130491759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.704;LDAF=0.0838;AVGPOST=0.9314;RSQ=0.6563;ERATE=0.0147;THETA=0.0004;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 130491787 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.4546;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130491900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.3910;AVGPOST=0.9966;RSQ=0.9943;ERATE=0.0008;THETA=0.0007;AC=857;AN=2184 GT:DS:GL:BD 0.39239928 0 1 130492037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.962;LDAF=0.3108;AVGPOST=0.9795;RSQ=0.9627;ERATE=0.0037;THETA=0.0008;AC=683;AN=2184 GT:DS:GL:BD 0.31272894 0 1 130492103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0004;THETA=0.0013;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130492146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.901;LDAF=0.2772;AVGPOST=0.9392;RSQ=0.8478;ERATE=0.0235;THETA=0.0007;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 130492279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0049;AVGPOST=0.9958;RSQ=0.7003;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130492335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130492391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3256;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 130492444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.371;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130492477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7683;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130492593 . ATC A 51 PASS INDEL;BAVGPOST=0.985;BRSQ=0.528;LDAF=0.0288;AVGPOST=0.9629;RSQ=0.4612;ERATE=0.0097;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130492611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130492651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8749;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130492814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130492819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0254;AVGPOST=0.9995;RSQ=0.9917;ERATE=0.0003;THETA=0.0026;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 130492879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.8050;ERATE=0.0004;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130492888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9662;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130492940 . TG T 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4999;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130492945 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.5896;AVGPOST=0.9934;RSQ=0.9910;ERATE=0.0008;THETA=0.0003;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 130493246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5358;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130493282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130493286 . TG T 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5375;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130493311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130493392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9589;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130493419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7627;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130493541 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130493558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3274;AVGPOST=0.9796;RSQ=0.9660;ERATE=0.0060;THETA=0.0003;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 130493710 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130493735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3258;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 130493749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130493779 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2238;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 130493811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7419;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130493835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0279;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130493895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3292;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0006;THETA=0.0005;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 130494031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2617;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0004;THETA=0.0016;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 130494137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130494153 . AT A 5424 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0557;AVGPOST=0.9990;RSQ=0.9926;ERATE=0.0005;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130494212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130494287 . TA T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.7183;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130494288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0044;AVGPOST=0.9961;RSQ=0.6274;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130494478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.559;LDAF=0.0027;AVGPOST=0.9969;RSQ=0.4994;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130494522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.1514;AVGPOST=0.9839;RSQ=0.9512;ERATE=0.0006;THETA=0.0003;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 130494573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3252;AVGPOST=0.9892;RSQ=0.9811;ERATE=0.0017;THETA=0.0004;AC=715;AN=2184 GT:DS:GL:BD 0.32738096 0 1 130494604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0677;AVGPOST=0.9985;RSQ=0.9894;ERATE=0.0004;THETA=0.0004;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130494689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0132;AVGPOST=0.9967;RSQ=0.8905;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130494735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3556;AVGPOST=0.9962;RSQ=0.9938;ERATE=0.0007;THETA=0.0004;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 130494980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7784;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130494995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8370;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130495030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130495088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130495109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8565;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130495141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8154;ERATE=0.0009;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130495253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0559;AVGPOST=0.9986;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 130495283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9212;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130495412 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0765;AVGPOST=0.9991;RSQ=0.9944;ERATE=0.0003;THETA=0.0007;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 130495546 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0290;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130495632 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130495671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.941;LDAF=0.0385;AVGPOST=0.9957;RSQ=0.9506;ERATE=0.0005;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 130495713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0679;AVGPOST=0.9981;RSQ=0.9863;ERATE=0.0007;THETA=0.0004;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130495746 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2380;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 130495824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9539;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130495904 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9704;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130495968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.760;LDAF=0.0092;AVGPOST=0.9920;RSQ=0.6674;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130496032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130496040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5381;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130496046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.823;LDAF=0.0078;AVGPOST=0.9952;RSQ=0.7877;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130496082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0299;AVGPOST=0.9995;RSQ=0.9932;ERATE=0.0003;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130496122 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130496290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3271;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0004;THETA=0.0006;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 130496396 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130496407 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.927;LDAF=0.0276;AVGPOST=0.9975;RSQ=0.9632;ERATE=0.0010;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130496464 . AGG A 40 PASS INDEL;BAVGPOST=0.852;BRSQ=0.019;LDAF=0.0445;AVGPOST=0.9221;RSQ=0.2671;ERATE=0.0010;THETA=0.0053;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130497073 . GGA G 469 PASS INDEL;BAVGPOST=0.785;BRSQ=0.034;LDAF=0.0655;AVGPOST=0.8894;RSQ=0.1865;ERATE=0.0068;THETA=0.0018;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130497074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.924;LDAF=0.2182;AVGPOST=0.9699;RSQ=0.9365;ERATE=0.0095;THETA=0.0016;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 130497700 . TCAAA T 1823 PASS INDEL;BAVGPOST=0.987;BRSQ=0.632;LDAF=0.0188;AVGPOST=0.9853;RSQ=0.6440;ERATE=0.0014;THETA=0.0079;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130497747 . TTTTC T 167 PASS INDEL;BAVGPOST=0.995;BRSQ=0.363;LDAF=0.0064;AVGPOST=0.9911;RSQ=0.3707;ERATE=0.0016;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130498120 . A ACC 10155 PASS INDEL;BAVGPOST=0.872;BRSQ=0.627;LDAF=0.1765;AVGPOST=0.8962;RSQ=0.7587;ERATE=0.0020;THETA=0.0044;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 130498153 . GAA G 119 PASS INDEL;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0052;AVGPOST=0.9941;RSQ=0.5104;ERATE=0.0007;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130498170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0038;AVGPOST=0.9951;RSQ=0.4913;ERATE=0.0014;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130498213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.752;LDAF=0.0795;AVGPOST=0.9650;RSQ=0.8239;ERATE=0.0020;THETA=0.0050;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 130498331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.716;LDAF=0.0249;AVGPOST=0.9849;RSQ=0.7897;ERATE=0.0009;THETA=0.0025;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130498416 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.927;LDAF=0.0497;AVGPOST=0.9920;RSQ=0.9321;ERATE=0.0013;THETA=0.0056;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 130498543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130498546 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.948;LDAF=0.0512;AVGPOST=0.9933;RSQ=0.9479;ERATE=0.0004;THETA=0.0041;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 130498618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0131;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130498620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.874;LDAF=0.0838;AVGPOST=0.9665;RSQ=0.8390;ERATE=0.0043;THETA=0.0134;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 130498719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8272;ERATE=0.0004;THETA=0.0082;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130498958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.821;LDAF=0.0780;AVGPOST=0.9690;RSQ=0.8396;ERATE=0.0034;THETA=0.0090;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130499000 . TG T 319 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8769;ERATE=0.0004;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130499581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5479;ERATE=0.0005;THETA=0.0042;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130499797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130499898 . A AC 1383 PASS INDEL;BAVGPOST=0.885;BRSQ=0.157;LDAF=0.1055;AVGPOST=0.8385;RSQ=0.2888;ERATE=0.0096;THETA=0.0108;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130500420 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.752;LDAF=0.0761;AVGPOST=0.9633;RSQ=0.8060;ERATE=0.0030;THETA=0.0106;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 130500836 . C CT 31770 PASS INDEL;BAVGPOST=0.829;BRSQ=0.395;LDAF=0.7963;AVGPOST=0.7939;RSQ=0.4662;ERATE=0.0221;THETA=0.0014;AC=1880;AN=2184 GT:DS:GL:BD 0.86080587 1 1 130500970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.847;LDAF=0.4174;AVGPOST=0.8928;RSQ=0.8258;ERATE=0.0100;THETA=0.0026;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 130501100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.913;LDAF=0.1956;AVGPOST=0.9641;RSQ=0.9224;ERATE=0.0008;THETA=0.0094;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 130501117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.798;LDAF=0.0221;AVGPOST=0.9943;RSQ=0.9002;ERATE=0.0006;THETA=0.0200;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130501181 . CTAGTT C 678 PASS INDEL;BAVGPOST=0.993;BRSQ=0.694;LDAF=0.0095;AVGPOST=0.9933;RSQ=0.7153;ERATE=0.0014;THETA=0.0104;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130501197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0124;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130501633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1336;AVGPOST=0.9983;RSQ=0.9941;ERATE=0.0004;THETA=0.0012;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 130501754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0257;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130501887 . G GC 1186 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0077;AVGPOST=0.9974;RSQ=0.8576;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130501961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9362;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130501990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.972;LDAF=0.1454;AVGPOST=0.9841;RSQ=0.9550;ERATE=0.0039;THETA=0.0016;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 130502008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.858;LDAF=0.0092;AVGPOST=0.9980;RSQ=0.9088;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130502023 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9232;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130502033 rs113466490 CTG C 1437 PASS INDEL;BAVGPOST=0.969;BRSQ=0.687;LDAF=0.0479;AVGPOST=0.9687;RSQ=0.7744;ERATE=0.0047;THETA=0.0009;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130502080 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.899;LDAF=0.0681;AVGPOST=0.9923;RSQ=0.9555;ERATE=0.0014;THETA=0.0021;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 130502097 . AAC A 387 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6347;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130502152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8756;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130502179 . GCA G 375 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130502195 . AG A 300 PASS INDEL;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0027;AVGPOST=0.9970;RSQ=0.5796;ERATE=0.0013;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130502218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1346;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 130502388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0730;AVGPOST=0.9982;RSQ=0.9905;ERATE=0.0004;THETA=0.0011;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 130502389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.433;LDAF=0.0090;AVGPOST=0.9872;RSQ=0.4374;ERATE=0.0037;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130502406 . T TGC 162 PASS INDEL;BAVGPOST=0.998;BRSQ=0.686;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.6398;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130502508 rs113088428 ACC A 1983 PASS INDEL;BAVGPOST=0.946;BRSQ=0.739;LDAF=0.1172;AVGPOST=0.9452;RSQ=0.7976;ERATE=0.0088;THETA=0.0009;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 130502600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130502659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130502674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130502699 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0139;AVGPOST=0.9993;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130502727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130502792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130502937 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1329;AVGPOST=0.9975;RSQ=0.9912;ERATE=0.0005;THETA=0.0007;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 130503162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130503213 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1316;AVGPOST=0.9980;RSQ=0.9932;ERATE=0.0005;THETA=0.0011;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 130503267 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0129;AVGPOST=0.9987;RSQ=0.9562;ERATE=0.0005;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130503283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.912;LDAF=0.1783;AVGPOST=0.9748;RSQ=0.9437;ERATE=0.0006;THETA=0.0006;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 130503293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.942;LDAF=0.4441;AVGPOST=0.9604;RSQ=0.9512;ERATE=0.0050;THETA=0.0006;AC=971;AN=2184 GT:DS:GL:BD 0.44459707 0 1 130503294 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9629;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130503352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0476;AVGPOST=0.9986;RSQ=0.9884;ERATE=0.0003;THETA=0.0010;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130503354 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.3365;AVGPOST=0.9803;RSQ=0.9662;ERATE=0.0019;THETA=0.0004;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 130503474 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0062;AVGPOST=0.9982;RSQ=0.8776;ERATE=0.0006;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130503555 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9174;ERATE=0.0005;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130503656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130503692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5816;ERATE=0.0006;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130503699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1340;AVGPOST=0.9970;RSQ=0.9905;ERATE=0.0005;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130503727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7930;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130503731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.774;LDAF=0.0386;AVGPOST=0.9821;RSQ=0.8084;ERATE=0.0007;THETA=0.0048;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 130503935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8657;ERATE=0.0006;THETA=0.0070;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130504026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7743;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130504081 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8495;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130504108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0031;AVGPOST=0.9970;RSQ=0.5945;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130504144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1371;AVGPOST=0.9952;RSQ=0.9847;ERATE=0.0006;THETA=0.0005;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 130504234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1316;AVGPOST=0.9967;RSQ=0.9900;ERATE=0.0004;THETA=0.0022;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 130504271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3270;AVGPOST=0.9915;RSQ=0.9857;ERATE=0.0004;THETA=0.0006;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 130504285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.780;LDAF=0.0086;AVGPOST=0.9960;RSQ=0.7988;ERATE=0.0007;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130504321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1367;AVGPOST=0.9974;RSQ=0.9911;ERATE=0.0005;THETA=0.0006;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 130504381 . G GA 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8283;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130504448 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7357;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130504515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.955;LDAF=0.1330;AVGPOST=0.9909;RSQ=0.9701;ERATE=0.0009;THETA=0.0040;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 130504627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0235;AVGPOST=0.9927;RSQ=0.8849;ERATE=0.0009;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130504632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1354;AVGPOST=0.9940;RSQ=0.9818;ERATE=0.0006;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 130504721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.800;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8645;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130504739 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0198;AVGPOST=0.9979;RSQ=0.9530;ERATE=0.0007;THETA=0.0012;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130504793 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0097;AVGPOST=0.9971;RSQ=0.8635;ERATE=0.0006;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130504840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7599;ERATE=0.0005;THETA=0.0053;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130504896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.963;LDAF=0.2668;AVGPOST=0.9839;RSQ=0.9714;ERATE=0.0004;THETA=0.0010;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 130504913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.959;LDAF=0.2668;AVGPOST=0.9820;RSQ=0.9663;ERATE=0.0011;THETA=0.0011;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 130504967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1343;AVGPOST=0.9883;RSQ=0.9633;ERATE=0.0013;THETA=0.0042;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 130505070 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0112;AVGPOST=0.9928;RSQ=0.7494;ERATE=0.0005;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130505129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0512;AVGPOST=0.9921;RSQ=0.9399;ERATE=0.0011;THETA=0.0017;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 130505134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.945;LDAF=0.3258;AVGPOST=0.9503;RSQ=0.9198;ERATE=0.0049;THETA=0.0009;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 130505144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.946;LDAF=0.1297;AVGPOST=0.9908;RSQ=0.9706;ERATE=0.0006;THETA=0.0005;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 130505153 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.396;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3430;ERATE=0.0009;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130505154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.487;LDAF=0.0046;AVGPOST=0.9922;RSQ=0.3390;ERATE=0.0016;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130505178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0526;AVGPOST=0.9963;RSQ=0.9711;ERATE=0.0009;THETA=0.0015;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 130505409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0219;AVGPOST=0.9991;RSQ=0.9821;ERATE=0.0004;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130505428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0201;AVGPOST=0.9964;RSQ=0.9346;ERATE=0.0005;THETA=0.0008;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130505548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0034;AVGPOST=0.9957;RSQ=0.4884;ERATE=0.0008;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130505579 . G GTACCTGAA 4386 PASS INDEL;BAVGPOST=0.996;BRSQ=0.845;LDAF=0.0145;AVGPOST=0.9962;RSQ=0.8894;ERATE=0.0007;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130505583 . A AT 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.504;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3860;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130505631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6916;ERATE=0.0006;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130505690 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.979;LDAF=0.5616;AVGPOST=0.9802;RSQ=0.9707;ERATE=0.0013;THETA=0.0031;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 130505757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0003;THETA=0.0105;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130505903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130505909 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.573;LDAF=0.0030;AVGPOST=0.9969;RSQ=0.6053;ERATE=0.0009;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130505955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.502;LDAF=0.0024;AVGPOST=0.9959;RSQ=0.2294;ERATE=0.0012;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130506113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0037;AVGPOST=0.9965;RSQ=0.5687;ERATE=0.0010;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130506123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.877;LDAF=0.8048;AVGPOST=0.9692;RSQ=0.9318;ERATE=0.0012;THETA=0.0009;AC=1756;AN=2184 GT:DS:GL:BD 0.80402929 1 1 130506163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.879;LDAF=0.0322;AVGPOST=0.9898;RSQ=0.8828;ERATE=0.0016;THETA=0.0012;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 130506264 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.952;LDAF=0.4912;AVGPOST=0.9537;RSQ=0.9354;ERATE=0.0042;THETA=0.0027;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 130506360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6521;ERATE=0.0005;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130506370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.625;LDAF=0.0098;AVGPOST=0.9938;RSQ=0.7832;ERATE=0.0007;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130506398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.7326;ERATE=0.0004;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130506579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0089;AVGPOST=0.9962;RSQ=0.8180;ERATE=0.0008;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130506611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5438;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130507194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130507276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0522;AVGPOST=0.9992;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 130507383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4774;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130507471 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130507888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1828;AVGPOST=0.9976;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 130507974 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130508007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130508149 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130508164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130508242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6982;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130508345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130508378 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8982;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130508401 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.707;BRSQ=0.433;LDAF=0.3975;AVGPOST=0.7669;RSQ=0.6294;ERATE=0.0141;THETA=0.0012;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 130508744 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.751;BRSQ=0.328;LDAF=0.2338;AVGPOST=0.8341;RSQ=0.6425;ERATE=0.0066;THETA=0.0007;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 130508778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.498;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4554;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130509422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7603;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130509548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5730;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130509940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130510084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.4538;AVGPOST=0.9839;RSQ=0.9741;ERATE=0.0008;THETA=0.0003;AC=994;AN=2184 GT:DS:GL:BD 0.45512819 0 1 130510236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.824;LDAF=0.0264;AVGPOST=0.9904;RSQ=0.8667;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130510476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7839;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130510558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0041;AVGPOST=0.9974;RSQ=0.7643;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130510747 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3273;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130510800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.977;LDAF=0.1806;AVGPOST=0.9870;RSQ=0.9733;ERATE=0.0016;THETA=0.0006;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 130510871 . GC G 1140 PASS INDEL;BAVGPOST=0.997;BRSQ=0.809;LDAF=0.0063;AVGPOST=0.9982;RSQ=0.8912;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130511027 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4908;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130511039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4285;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130511048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0181;AVGPOST=0.9991;RSQ=0.9774;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130511080 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5259;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130511139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.686;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8509;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130511231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0225;AVGPOST=0.9978;RSQ=0.9591;ERATE=0.0004;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130511260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.620;LDAF=0.0130;AVGPOST=0.9917;RSQ=0.7424;ERATE=0.0005;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130511386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0641;AVGPOST=0.9984;RSQ=0.9906;ERATE=0.0004;THETA=0.0008;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 130511450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0149;AVGPOST=0.9935;RSQ=0.8291;ERATE=0.0005;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130511462 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130511505 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0678;AVGPOST=0.9964;RSQ=0.9746;ERATE=0.0006;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 130511603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.888;LDAF=0.0393;AVGPOST=0.9923;RSQ=0.9239;ERATE=0.0004;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130511606 rs35613376 G GA 3039 PASS INDEL;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0688;AVGPOST=0.9942;RSQ=0.9633;ERATE=0.0009;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 130511619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0674;AVGPOST=0.9968;RSQ=0.9806;ERATE=0.0005;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 130511632 . AC A 181 PASS INDEL;BAVGPOST=0.998;BRSQ=0.626;LDAF=0.0055;AVGPOST=0.9958;RSQ=0.6634;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130511635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.549;LDAF=0.0067;AVGPOST=0.9954;RSQ=0.7285;ERATE=0.0004;THETA=0.0041;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130511751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5565;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130511904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130512019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130512042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8809;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130512310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9660;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130512313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3847;AVGPOST=0.9937;RSQ=0.9906;ERATE=0.0007;THETA=0.0006;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 130512347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5210;AVGPOST=0.9896;RSQ=0.9854;ERATE=0.0005;THETA=0.0005;AC=1138;AN=2184 GT:DS:GL:BD 0.52106225 1 1 130512513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7917;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130512615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9281;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130512711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130512716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5573;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130512721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.907;LDAF=0.0929;AVGPOST=0.9833;RSQ=0.9262;ERATE=0.0005;THETA=0.0027;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 130512756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0139;AVGPOST=0.9990;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130512824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9718;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130512889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0124;AVGPOST=0.9993;RSQ=0.9758;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130512954 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0108;AVGPOST=0.9972;RSQ=0.9014;ERATE=0.0004;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130513087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.927;LDAF=0.0960;AVGPOST=0.9662;RSQ=0.8566;ERATE=0.0045;THETA=0.0006;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 130513089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.4249;AVGPOST=0.9668;RSQ=0.9495;ERATE=0.0043;THETA=0.0008;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 130513100 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0131;AVGPOST=0.9967;RSQ=0.8987;ERATE=0.0008;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130513113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0111;AVGPOST=0.9967;RSQ=0.8891;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130513122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.855;LDAF=0.1990;AVGPOST=0.9518;RSQ=0.8959;ERATE=0.0029;THETA=0.0011;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 130513155 . GCC G 909 PASS INDEL;BAVGPOST=0.926;BRSQ=0.498;LDAF=0.0796;AVGPOST=0.9289;RSQ=0.6110;ERATE=0.0111;THETA=0.0008;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 130513171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130513204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130513404 rs112306711 C CT 2635 PASS INDEL;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0263;AVGPOST=0.9973;RSQ=0.9600;ERATE=0.0004;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130513606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0125;AVGPOST=0.9980;RSQ=0.9385;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130513842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130513896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130513898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9092;ERATE=0.0004;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130513959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8551;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130514064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0245;AVGPOST=0.9966;RSQ=0.9438;ERATE=0.0004;THETA=0.0007;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 130514091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0201;AVGPOST=0.9965;RSQ=0.9354;ERATE=0.0004;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 130514260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.2134;AVGPOST=0.9891;RSQ=0.9764;ERATE=0.0005;THETA=0.0052;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 130514334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4832;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130514413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9195;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130514426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0056;AVGPOST=0.9952;RSQ=0.6747;ERATE=0.0005;THETA=0.0020;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130514501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.946;LDAF=0.0169;AVGPOST=0.9978;RSQ=0.9461;ERATE=0.0004;THETA=0.0017;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 130514573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130514643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0127;AVGPOST=0.9954;RSQ=0.8534;ERATE=0.0003;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130514693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3899;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130514717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.6231;ERATE=0.0005;THETA=0.0047;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130514718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.534;LDAF=0.0066;AVGPOST=0.9951;RSQ=0.6711;ERATE=0.0011;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130514806 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0072;AVGPOST=0.9976;RSQ=0.8650;ERATE=0.0004;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130514861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130514973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9405;ERATE=0.0003;THETA=0.0048;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130514991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.7720;AVGPOST=0.9861;RSQ=0.9713;ERATE=0.0004;THETA=0.0018;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 130515021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130515097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.7733;AVGPOST=0.9842;RSQ=0.9674;ERATE=0.0006;THETA=0.0067;AC=1690;AN=2184 GT:DS:GL:BD 0.77380955 1 1 130515128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4161;ERATE=0.0004;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130515213 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.557;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8150;ERATE=0.0006;THETA=0.0151;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130515407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.476;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3578;ERATE=0.0006;THETA=0.0264;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130515464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.580;LDAF=0.0040;AVGPOST=0.9963;RSQ=0.5903;ERATE=0.0006;THETA=0.0044;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130515540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.655;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5841;ERATE=0.0007;THETA=0.0167;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130515560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8891;ERATE=0.0003;THETA=0.0170;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130515792 . TG T 235 PASS INDEL;BAVGPOST=0.996;BRSQ=0.681;LDAF=0.0053;AVGPOST=0.9953;RSQ=0.6359;ERATE=0.0006;THETA=0.0116;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130515809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130515813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0154;AVGPOST=0.9990;RSQ=0.9699;ERATE=0.0003;THETA=0.0071;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130515843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130515911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.622;LDAF=0.0051;AVGPOST=0.9941;RSQ=0.5802;ERATE=0.0010;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130515949 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4613;ERATE=0.0006;THETA=0.0108;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130516002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.908;LDAF=0.0203;AVGPOST=0.9940;RSQ=0.8937;ERATE=0.0004;THETA=0.0034;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130516011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.7954;ERATE=0.0005;THETA=0.0129;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130516136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.722;LDAF=0.0062;AVGPOST=0.9975;RSQ=0.8234;ERATE=0.0006;THETA=0.0097;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130516376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0004;THETA=0.0111;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130516409 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0153;AVGPOST=0.9993;RSQ=0.9771;ERATE=0.0004;THETA=0.0017;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130516555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7733;ERATE=0.0004;THETA=0.0182;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130516570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.855;LDAF=0.1120;AVGPOST=0.9490;RSQ=0.8025;ERATE=0.0056;THETA=0.0062;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 130516634 . GGGCCGCACC G 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3664;ERATE=0.0005;THETA=0.0146;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130516694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0045;AVGPOST=0.9966;RSQ=0.7132;ERATE=0.0006;THETA=0.0183;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130516698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.796;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7646;ERATE=0.0004;THETA=0.0212;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130516729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.5706;ERATE=0.0005;THETA=0.0082;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130516828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.600;LDAF=0.0042;AVGPOST=0.9946;RSQ=0.4157;ERATE=0.0012;THETA=0.0133;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130516886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130517077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0420;AVGPOST=0.9984;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 130517190 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8865;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130517254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9237;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130517467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0825;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 130517483 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9365;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130517506 . GC G 771 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9120;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130517618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7831;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130517676 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5417;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130517756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6731;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130517947 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130517949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6690;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130518046 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130518120 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130518127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0415;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0002;THETA=0.0009;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 130518130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130518246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7522;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130518355 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0413;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0002;THETA=0.0008;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 130518368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1015;AVGPOST=0.9996;RSQ=0.9981;ERATE=0.0003;THETA=0.0021;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 130518373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9595;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130518495 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130518529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.0889;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0002;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 130518746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4728;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130518756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0140;AVGPOST=0.9990;RSQ=0.9748;ERATE=0.0002;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130518780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0002;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130518902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7493;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130518922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9995;RSQ=0.9785;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130518934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0069;AVGPOST=0.9995;RSQ=0.9683;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130518994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2335;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 130519138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7966;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130519154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130519189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1673;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 130519246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0110;AVGPOST=0.9988;RSQ=0.9575;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130519276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6520;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130519307 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4600;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130519329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.540;LDAF=0.0077;AVGPOST=0.9897;RSQ=0.4885;ERATE=0.0010;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130519363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.6578;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130519366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.3249;AVGPOST=0.9738;RSQ=0.9576;ERATE=0.0053;THETA=0.0002;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 130519367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130519406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.3019;AVGPOST=0.9928;RSQ=0.9880;ERATE=0.0010;THETA=0.0003;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 130519544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9368;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130519586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1018;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0002;THETA=0.0002;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 130519646 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7334;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130519776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0535;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 130519812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0041;AVGPOST=0.9979;RSQ=0.8031;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130519928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8579;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130519950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8597;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130519951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0833;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 130519956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0113;AVGPOST=0.9993;RSQ=0.9713;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130519986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0965;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 130520040 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130520146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9477;ERATE=0.0003;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130520288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.555;LDAF=0.0173;AVGPOST=0.9779;RSQ=0.5017;ERATE=0.0063;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130520325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130520372 . T TAC 289 PASS INDEL;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0131;AVGPOST=0.9860;RSQ=0.5458;ERATE=0.0044;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130520458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0832;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 130520550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0959;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0002;THETA=0.0004;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 130520562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1811;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0002;THETA=0.0002;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 130520585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0002;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 130520709 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7489;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 130520722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130520842 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9917;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130520975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0962;AVGPOST=0.9978;RSQ=0.9899;ERATE=0.0003;THETA=0.0004;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 130521071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0830;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0002;THETA=0.0006;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 130521073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130521201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0022;AVGPOST=0.9998;RSQ=0.9641;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130521217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130521241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3238;AVGPOST=0.9920;RSQ=0.9886;ERATE=0.0013;THETA=0.0004;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 130521273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8492;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130521346 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.7315;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130521370 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8993;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130521397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9094;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130521402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130521443 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.7096;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130521476 . CTTGT C 9215 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0573;AVGPOST=0.9976;RSQ=0.9833;ERATE=0.0003;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 130521587 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130521616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130521644 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3215;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0002;THETA=0.0002;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 130521706 . CT C 541 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0073;AVGPOST=0.9983;RSQ=0.9188;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130521736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0841;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 130521762 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130521872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0894;AVGPOST=0.9991;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 130522004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9995;RSQ=0.9726;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130522032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0226;AVGPOST=0.9989;RSQ=0.9804;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130522161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8803;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130522194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0208;AVGPOST=0.9994;RSQ=0.9887;ERATE=0.0003;THETA=0.0009;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130522236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0181;AVGPOST=0.9968;RSQ=0.9417;ERATE=0.0004;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 130522253 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130522290 . G GA 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7612;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130522293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2492;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0003;THETA=0.0007;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 130522304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130522378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130522400 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0496;AVGPOST=0.9994;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130522522 . CAT C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130522620 . C CAGA 13641 PASS INDEL;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0502;AVGPOST=0.9986;RSQ=0.9890;ERATE=0.0005;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 130522692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6475;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130522745 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0493;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130522884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0495;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0004;THETA=0.0009;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130522897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.541;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4059;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130522989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130523000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0494;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0004;THETA=0.0009;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130523296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0453;AVGPOST=0.9983;RSQ=0.9853;ERATE=0.0005;THETA=0.0009;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 130523334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0487;AVGPOST=0.9983;RSQ=0.9873;ERATE=0.0004;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 130523351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130523362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7769;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130523512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130523533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9617;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130523542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130523703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9237;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130523779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0493;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 130523804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7535;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130523932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6231;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130523936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130523993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9600;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130524083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 130524129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6788;ERATE=0.0008;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130524176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130524254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7493;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130524282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6388;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524299 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9997;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 130524337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8918;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130524431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 130524455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130524538 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0154;AVGPOST=0.9992;RSQ=0.9749;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130524593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0336;AVGPOST=0.9957;RSQ=0.9488;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130524787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2631;AVGPOST=0.9877;RSQ=0.9767;ERATE=0.0005;THETA=0.0004;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 130524832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2349;AVGPOST=0.9932;RSQ=0.9875;ERATE=0.0007;THETA=0.0007;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 130524842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6689;ERATE=0.0013;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130524920 . C CT 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0102;AVGPOST=0.9886;RSQ=0.5257;ERATE=0.0013;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130524941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0255;AVGPOST=0.9910;RSQ=0.8696;ERATE=0.0005;THETA=0.0009;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 130525142 . C CA 80 PASS INDEL;BAVGPOST=0.992;BRSQ=0.454;LDAF=0.0168;AVGPOST=0.9756;RSQ=0.3632;ERATE=0.0037;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130525168 . T TC 48 PASS INDEL;BAVGPOST=0.968;BRSQ=0.234;LDAF=0.0631;AVGPOST=0.9109;RSQ=0.4034;ERATE=0.0105;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 130525169 . C CTGGGACTACAGG 628 PASS INDEL;BAVGPOST=0.992;BRSQ=0.440;LDAF=0.0108;AVGPOST=0.9943;RSQ=0.7914;ERATE=0.0009;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130525323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.530;LDAF=0.1386;AVGPOST=0.8926;RSQ=0.6586;ERATE=0.0094;THETA=0.0008;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 130525333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130525465 . AG A 1437 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9984;RSQ=0.9437;ERATE=0.0006;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130525530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.5921;ERATE=0.0009;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130525564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130525584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9786;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 130525652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2133;AVGPOST=0.9960;RSQ=0.9910;ERATE=0.0007;THETA=0.0007;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 130525697 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9622;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130525750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130525763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0064;AVGPOST=0.9986;RSQ=0.9155;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130525797 . C CA 14496 PASS INDEL;BAVGPOST=0.990;BRSQ=0.974;LDAF=0.2180;AVGPOST=0.9859;RSQ=0.9697;ERATE=0.0043;THETA=0.0012;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 130525827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5587;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130525940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0225;AVGPOST=0.9989;RSQ=0.9811;ERATE=0.0003;THETA=0.0013;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 130525941 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0996;AVGPOST=0.9972;RSQ=0.9907;ERATE=0.0005;THETA=0.0006;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 130526037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0386;AVGPOST=0.9984;RSQ=0.9836;ERATE=0.0004;THETA=0.0017;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 130526058 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9291;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130526267 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6185;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130526392 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8401;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130526480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130526481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5247;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130526554 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130526599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0075;AVGPOST=0.9993;RSQ=0.9557;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130526770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2274;AVGPOST=0.9976;RSQ=0.9948;ERATE=0.0005;THETA=0.0009;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 130526784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7579;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130526794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.4872;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130526860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130526892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130526934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130527004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130527019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.695;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6706;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130527112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7749;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130527149 . TG T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8145;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130527253 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6170;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130527360 . CAT C 2328 PASS INDEL;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0149;AVGPOST=0.9983;RSQ=0.9518;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130527373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9701;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0004;THETA=0.0006;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 130527388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7536;AVGPOST=0.9980;RSQ=0.9962;ERATE=0.0004;THETA=0.0008;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130527402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1231;AVGPOST=0.9980;RSQ=0.9917;ERATE=0.0005;THETA=0.0005;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 130527549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7544;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0004;THETA=0.0007;AC=1647;AN=2184 GT:DS:GL:BD 0.75412089 1 1 130527581 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8503;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130527682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0113;AVGPOST=0.9993;RSQ=0.9740;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 130527709 . G GT 402 PASS INDEL;BAVGPOST=0.959;BRSQ=0.507;LDAF=0.0651;AVGPOST=0.9258;RSQ=0.5060;ERATE=0.0168;THETA=0.0020;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 130527723 . TTTTTC T 12406 PASS INDEL;BAVGPOST=0.982;BRSQ=0.930;LDAF=0.1554;AVGPOST=0.9941;RSQ=0.9809;ERATE=0.0012;THETA=0.0004;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 130527735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9716;AVGPOST=0.9991;RSQ=0.9881;ERATE=0.0004;THETA=0.0017;AC=2122;AN=2184 GT:DS:GL:BD 0.97161174 1 1 130527752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9798;ERATE=0.0004;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130527874 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5162;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130527948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9705;AVGPOST=0.9991;RSQ=0.9899;ERATE=0.0004;THETA=0.0013;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 130528048 . AAAC A 163 PASS INDEL;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0044;AVGPOST=0.9981;RSQ=0.8305;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130528073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9471;ERATE=0.0004;THETA=0.0017;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130528144 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0284;AVGPOST=0.9980;RSQ=0.9706;ERATE=0.0005;THETA=0.0010;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 130528182 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7090;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130528340 . ACT A 913 PASS INDEL;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8700;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130528357 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0037;AVGPOST=0.9969;RSQ=0.6669;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130528361 . AAAAC A 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0038;AVGPOST=0.9958;RSQ=0.5490;ERATE=0.0011;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130528390 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2167;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0004;THETA=0.0008;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 130528435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130528446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130528480 . A ATG 146 PASS INDEL;BAVGPOST=0.997;BRSQ=0.895;LDAF=0.0132;AVGPOST=0.9971;RSQ=0.9149;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130528701 . G GGTT 1074 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0150;AVGPOST=0.9984;RSQ=0.9572;ERATE=0.0005;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 130528711 . AGC A 19 PASS INDEL;BAVGPOST=0.988;BRSQ=0.628;LDAF=0.0051;AVGPOST=0.9945;RSQ=0.5739;ERATE=0.0018;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130528761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130528849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0132;AVGPOST=0.9991;RSQ=0.9757;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130528871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130528891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.4885;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130528949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130528953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7419;AVGPOST=0.9981;RSQ=0.9963;ERATE=0.0008;THETA=0.0007;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 130529029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9350;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130529056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130529082 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9466;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130529217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5198;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130529296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130529365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130529398 . C CA 125 PASS INDEL;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0046;AVGPOST=0.9931;RSQ=0.3874;ERATE=0.0014;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130529401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0108;AVGPOST=0.9986;RSQ=0.9400;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130529421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8310;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130529426 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6298;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130529766 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5664;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130529810 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.2538;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130529827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.607;LDAF=0.0117;AVGPOST=0.9816;RSQ=0.3660;ERATE=0.0028;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130529835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.846;LDAF=0.6613;AVGPOST=0.8968;RSQ=0.8396;ERATE=0.0188;THETA=0.0009;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 130529957 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.4484;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130530074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.385;LDAF=0.0028;AVGPOST=0.9952;RSQ=0.2733;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130530075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0250;AVGPOST=0.9993;RSQ=0.9875;ERATE=0.0004;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130530191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9983;RSQ=0.8910;ERATE=0.0006;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130530241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.382;LDAF=0.0069;AVGPOST=0.9909;RSQ=0.4809;ERATE=0.0016;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130530298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1549;AVGPOST=0.9969;RSQ=0.9899;ERATE=0.0007;THETA=0.0007;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 130530335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9292;ERATE=0.0004;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 130530360 rs35610124 C CA 6508 PASS INDEL;BAVGPOST=0.953;BRSQ=0.865;LDAF=0.2094;AVGPOST=0.9453;RSQ=0.8684;ERATE=0.0085;THETA=0.0004;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 130530373 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1787;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 130530422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0136;AVGPOST=0.9972;RSQ=0.9185;ERATE=0.0005;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130530514 . G GT 319 PASS INDEL;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.4952;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130530521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.881;LDAF=0.6729;AVGPOST=0.9080;RSQ=0.8620;ERATE=0.0091;THETA=0.0011;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 130530779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8295;AVGPOST=0.9980;RSQ=0.9949;ERATE=0.0004;THETA=0.0010;AC=1812;AN=2184 GT:DS:GL:BD 0.82967031 1 1 130530853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130530903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0158;AVGPOST=0.9994;RSQ=0.9810;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130531028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9073;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130531039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9812;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0015;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 130531176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130531189 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1230;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 130531197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130531198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7542;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0005;THETA=0.0008;AC=1648;AN=2184 GT:DS:GL:BD 0.75457877 1 1 130531253 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.931;LDAF=0.0800;AVGPOST=0.9890;RSQ=0.9500;ERATE=0.0004;THETA=0.0027;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 130531379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7915;ERATE=0.0004;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130531449 rs34200398 G GTA 166360 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.9800;AVGPOST=0.9980;RSQ=0.9646;ERATE=0.0004;THETA=0.0006;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 130531463 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1787;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 130531572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9865;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 130531622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130531637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6592;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130531674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1785;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0005;THETA=0.0007;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 130531809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9606;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130531850 . TA T 839 PASS INDEL;BAVGPOST=0.996;BRSQ=0.919;LDAF=0.0250;AVGPOST=0.9974;RSQ=0.9576;ERATE=0.0005;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 130531952 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.922;LDAF=0.0267;AVGPOST=0.9955;RSQ=0.9314;ERATE=0.0005;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 130531953 . A AT 223 PASS INDEL;BAVGPOST=0.969;BRSQ=0.469;LDAF=0.0396;AVGPOST=0.9650;RSQ=0.6529;ERATE=0.0038;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 130531953 . TA T 6575 PASS INDEL;BAVGPOST=0.982;BRSQ=0.953;LDAF=0.2189;AVGPOST=0.9921;RSQ=0.9831;ERATE=0.0004;THETA=0.0006;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 130531955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.2218;AVGPOST=0.9883;RSQ=0.9752;ERATE=0.0013;THETA=0.0006;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 130531956 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.841;LDAF=0.0612;AVGPOST=0.9793;RSQ=0.8676;ERATE=0.0007;THETA=0.0012;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 130531959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0365;AVGPOST=0.9996;RSQ=0.9958;ERATE=0.0003;THETA=0.0008;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 130532058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7343;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130532073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9989;RSQ=0.9761;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130532111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130532320 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8429;ERATE=0.0006;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130532404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0090;AVGPOST=0.9958;RSQ=0.8275;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130532438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0040;AVGPOST=0.9958;RSQ=0.5796;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130532514 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.497;LDAF=0.0022;AVGPOST=0.9959;RSQ=0.2477;ERATE=0.0009;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130532562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0101;AVGPOST=0.9973;RSQ=0.8969;ERATE=0.0004;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130532649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3625;ERATE=0.0006;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130532650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1698;ERATE=0.0003;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130532730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0077;AVGPOST=0.9995;RSQ=0.9719;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130532942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130532954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130533086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0179;AVGPOST=0.9989;RSQ=0.9757;ERATE=0.0004;THETA=0.0012;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 130533087 rs5772283 TC T 5353 PASS INDEL;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0368;AVGPOST=0.9951;RSQ=0.9581;ERATE=0.0004;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 130533147 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9810;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130533162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9495;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130533193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.8843;ERATE=0.0010;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130533275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8455;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130533353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0341;AVGPOST=0.9991;RSQ=0.9882;ERATE=0.0004;THETA=0.0014;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 130533369 . TCA T 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7740;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130533631 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5183;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130533817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4452;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130533829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4938;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130533912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.1041;AVGPOST=0.9955;RSQ=0.9796;ERATE=0.0004;THETA=0.0009;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 130533916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0058;AVGPOST=0.9989;RSQ=0.9361;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130534043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6908;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130534066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2416;AVGPOST=0.9948;RSQ=0.9912;ERATE=0.0005;THETA=0.0013;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 130534138 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130534209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130534518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9703;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130534623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9632;ERATE=0.0003;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130534680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0137;AVGPOST=0.9995;RSQ=0.9838;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 130534754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7210;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130534900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8141;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130534902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0049;AVGPOST=0.9976;RSQ=0.8009;ERATE=0.0006;THETA=0.0035;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130534958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130535143 . TCACC T 1623 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9391;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130535169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0018;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130535179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130535251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0806;AVGPOST=0.9992;RSQ=0.9966;ERATE=0.0003;THETA=0.0035;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 130535337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9629;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130535345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0452;AVGPOST=0.9979;RSQ=0.9838;ERATE=0.0004;THETA=0.0008;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 130535415 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7558;ERATE=0.0007;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130535488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8341;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130535501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0204;AVGPOST=0.9982;RSQ=0.9670;ERATE=0.0004;THETA=0.0011;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 130535635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0049;AVGPOST=0.9985;RSQ=0.8715;ERATE=0.0009;THETA=0.0029;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130535637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.0731;AVGPOST=0.9883;RSQ=0.9387;ERATE=0.0008;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130535679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4209;ERATE=0.0003;THETA=0.0037;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 130535731 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0262;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0004;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 130535798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0271;AVGPOST=0.9987;RSQ=0.9829;ERATE=0.0004;THETA=0.0026;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 130535906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0242;AVGPOST=0.9964;RSQ=0.9461;ERATE=0.0004;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130535977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0192;AVGPOST=0.9996;RSQ=0.9876;ERATE=0.0003;THETA=0.0031;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 130536038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6288;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130536049 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0226;AVGPOST=0.9993;RSQ=0.9859;ERATE=0.0004;THETA=0.0014;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 130536059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9735;ERATE=0.0003;THETA=0.0053;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130536065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0491;AVGPOST=0.9965;RSQ=0.9758;ERATE=0.0004;THETA=0.0084;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 130536141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6377;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130536335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7239;ERATE=0.0004;THETA=0.0113;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130536409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0038;AVGPOST=0.9974;RSQ=0.7217;ERATE=0.0007;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130536465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0539;AVGPOST=0.9949;RSQ=0.9661;ERATE=0.0008;THETA=0.0012;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 130536477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6201;ERATE=0.0007;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130536499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4704;ERATE=0.0005;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130536517 rs113103041 A AG 7650 PASS INDEL;BAVGPOST=0.993;BRSQ=0.961;LDAF=0.0684;AVGPOST=0.9880;RSQ=0.9383;ERATE=0.0006;THETA=0.0010;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 130536588 . TAGA T 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5287;ERATE=0.0005;THETA=0.0090;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130536630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0104;AVGPOST=0.9962;RSQ=0.8820;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130536723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.960;LDAF=0.0789;AVGPOST=0.9894;RSQ=0.9567;ERATE=0.0014;THETA=0.0117;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 130536765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0061;AVGPOST=0.9990;RSQ=0.9460;ERATE=0.0003;THETA=0.0173;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130536811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0119;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130536819 . ACTTT A 1405 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0080;AVGPOST=0.9993;RSQ=0.9610;ERATE=0.0003;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130536898 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.0588;AVGPOST=0.9968;RSQ=0.9826;ERATE=0.0013;THETA=0.0069;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 130536956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130536978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130536993 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0093;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130537031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7842;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130537099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.6419;AVGPOST=0.9953;RSQ=0.9927;ERATE=0.0006;THETA=0.0005;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 130537207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9488;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130537299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6083;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130537336 . CA C 635 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0060;AVGPOST=0.9978;RSQ=0.8470;ERATE=0.0004;THETA=0.0022;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 130537477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130537489 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.8809;AVGPOST=0.9979;RSQ=0.9925;ERATE=0.0005;THETA=0.0006;AC=1923;AN=2184 GT:DS:GL:BD 0.88049453 1 1 130537540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130537631 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8600;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 130537636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0133;AVGPOST=0.9977;RSQ=0.9303;ERATE=0.0006;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130537863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0097;AVGPOST=0.9979;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130537920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0081;AVGPOST=0.9987;RSQ=0.9375;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130537944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.973;LDAF=0.6345;AVGPOST=0.9822;RSQ=0.9731;ERATE=0.0027;THETA=0.0004;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 130537977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.8790;AVGPOST=0.9932;RSQ=0.9742;ERATE=0.0010;THETA=0.0003;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 130538009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130538070 . A AT 1889 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0105;AVGPOST=0.9985;RSQ=0.9359;ERATE=0.0005;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130538193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130538315 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0093;AVGPOST=0.9965;RSQ=0.8389;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 130538399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130538585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8822;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=1926;AN=2184 GT:DS:GL:BD 0.88186812 1 1 130538612 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9447;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130538740 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130538912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6948;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130538984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8226;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130539065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0100;AVGPOST=0.9995;RSQ=0.9769;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130539172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0100;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130539199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6120;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130539238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130539255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130539273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130539377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9410;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130539460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6330;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130539548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9990;RSQ=0.9657;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130539812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0239;AVGPOST=0.9991;RSQ=0.9848;ERATE=0.0004;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 130539817 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130539880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6333;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130539893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0154;AVGPOST=0.9991;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 130539897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9834;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130539925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130540030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6499;AVGPOST=0.9977;RSQ=0.9959;ERATE=0.0005;THETA=0.0008;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 130540161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.2039;AVGPOST=0.9941;RSQ=0.9861;ERATE=0.0005;THETA=0.0009;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 130540218 . C CT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130540247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6764;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130540315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8156;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130540323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9635;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130540384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130540458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130540476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0276;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 130540682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8863;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130540700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0179;AVGPOST=0.9981;RSQ=0.9590;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 130541024 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3841;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130541039 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0221;AVGPOST=0.9970;RSQ=0.9526;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 130541080 . C CA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130541138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130541140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130541317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0141;AVGPOST=0.9982;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130541460 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5266;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130541522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6790;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0003;THETA=0.0005;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 130541683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6564;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130541781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130541827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130541831 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 130541884 . A ATTGT 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130541904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0128;AVGPOST=0.9992;RSQ=0.9728;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 130541984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130542006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130542019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0075;AVGPOST=0.9975;RSQ=0.8453;ERATE=0.0006;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130542116 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130542342 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5810;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130542530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.7607;AVGPOST=0.9757;RSQ=0.9580;ERATE=0.0007;THETA=0.0069;AC=1669;AN=2184 GT:DS:GL:BD 0.76419413 1 1 130542582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0646;AVGPOST=0.9938;RSQ=0.9633;ERATE=0.0004;THETA=0.0022;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 130542620 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0353;AVGPOST=0.9956;RSQ=0.9511;ERATE=0.0005;THETA=0.0012;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 130542681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130542690 . ACT A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130542694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.505;LDAF=0.0048;AVGPOST=0.9948;RSQ=0.5968;ERATE=0.0011;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130542697 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9623;ERATE=0.0004;THETA=0.0056;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 130542708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6556;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130542711 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0023;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130542876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6083;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130543312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4095;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130543355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.990;LDAF=0.2847;AVGPOST=0.9893;RSQ=0.9831;ERATE=0.0005;THETA=0.0010;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 130543359 . C CA 44 PASS INDEL;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0056;AVGPOST=0.9922;RSQ=0.4080;ERATE=0.0010;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130543403 . AG A 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8490;ERATE=0.0005;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130543412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0165;AVGPOST=0.9990;RSQ=0.9734;ERATE=0.0004;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 130543425 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0224;AVGPOST=0.9956;RSQ=0.9244;ERATE=0.0008;THETA=0.0017;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 130543601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0199;AVGPOST=0.9972;RSQ=0.9430;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130543645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0048;AVGPOST=0.9942;RSQ=0.5317;ERATE=0.0023;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130543711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5036;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130543730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5220;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130543829 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5438;ERATE=0.0005;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130543858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0074;AVGPOST=0.9963;RSQ=0.8368;ERATE=0.0005;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 130543894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0115;AVGPOST=0.9960;RSQ=0.8702;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 130543954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6595;ERATE=0.0006;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130543956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0124;AVGPOST=0.9981;RSQ=0.9431;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 130543961 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0195;AVGPOST=0.9985;RSQ=0.9699;ERATE=0.0004;THETA=0.0041;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 130544017 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0080;AVGPOST=0.9969;RSQ=0.8386;ERATE=0.0010;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130544089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9090;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130544194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130544272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9983;RSQ=0.9285;ERATE=0.0004;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130544597 . A AAAAT 990 PASS INDEL;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0072;AVGPOST=0.9947;RSQ=0.7102;ERATE=0.0016;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 130544691 . CTGCACAGTGA C 275 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.7860;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130544718 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4992;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130544769 . TATG T 391 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8650;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 130544823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0237;AVGPOST=0.9990;RSQ=0.9801;ERATE=0.0003;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 130544853 . AAG A 1121 PASS INDEL;BAVGPOST=0.996;BRSQ=0.822;LDAF=0.0119;AVGPOST=0.9926;RSQ=0.7231;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 130544891 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7814;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130544902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5198;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130544919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0722;AVGPOST=0.9964;RSQ=0.9816;ERATE=0.0003;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 130544997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.9208;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130545089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130545091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8224;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130545162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130545186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0145;AVGPOST=0.9992;RSQ=0.9743;ERATE=0.0003;THETA=0.0015;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 130545217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2082;AVGPOST=0.9947;RSQ=0.9876;ERATE=0.0006;THETA=0.0010;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 130545322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0135;AVGPOST=0.9989;RSQ=0.9642;ERATE=0.0004;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 130545384 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130545468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7829;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130545554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0065;AVGPOST=0.9967;RSQ=0.8458;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 130545556 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130545648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9655;ERATE=0.0003;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130545701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7766;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130545924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8209;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130546250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1608;AVGPOST=0.9907;RSQ=0.9729;ERATE=0.0016;THETA=0.0010;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 130546258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7440;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130546349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0112;AVGPOST=0.9989;RSQ=0.9578;ERATE=0.0004;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 130546372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130546527 . TCCTC T 96 PASS INDEL;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0031;AVGPOST=0.9968;RSQ=0.5986;ERATE=0.0009;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 130546673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6263;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130546688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8028;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130546748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4309;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130546914 . GCT G 194 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130546985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8863;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130547022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8189;ERATE=0.0004;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130547058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6486;ERATE=0.0007;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130547074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6352;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 130547085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 130547136 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130547158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130547259 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9060;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 130547462 . AGAG A 554 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9299;ERATE=0.0005;THETA=0.0037;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 130547561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.719;LDAF=0.0111;AVGPOST=0.9904;RSQ=0.6673;ERATE=0.0006;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 130547885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0095;AVGPOST=0.9980;RSQ=0.9191;ERATE=0.0004;THETA=0.0014;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 130547926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5694;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130547975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4382;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 130547977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0041;AVGPOST=0.9955;RSQ=0.5894;ERATE=0.0006;THETA=0.0046;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 130548034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0297;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0004;THETA=0.0057;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 130548175 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0