1092 10000 1 133973170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0059;AVGPOST=0.9976;RSQ=0.8681;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133973275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9551;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 133973338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133973403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6935;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133973428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7468;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133973481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0085;AVGPOST=0.9931;RSQ=0.6688;ERATE=0.0008;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133973598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.808;LDAF=0.0124;AVGPOST=0.9899;RSQ=0.6555;ERATE=0.0013;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 133973614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133973749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133973959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133974080 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133974094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0422;AVGPOST=0.9983;RSQ=0.9816;ERATE=0.0004;THETA=0.0027;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 133974271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133974290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9461;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133974890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6247;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133974939 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133974956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4363;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133975001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9764;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133975102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4525;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133975123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7303;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133975125 . CTTTG C 200 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0032;AVGPOST=0.9955;RSQ=0.4407;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133975129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133975381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9879;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133975498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133975643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133975731 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9787;ERATE=0.0004;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133975795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.5065;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133975806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0122;AVGPOST=0.9955;RSQ=0.8526;ERATE=0.0004;THETA=0.0012;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 133975965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8685;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133975994 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133976011 . G GA 1821 PASS INDEL;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0343;AVGPOST=0.9977;RSQ=0.9741;ERATE=0.0003;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 133976041 . TC T 1333 PASS INDEL;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0342;AVGPOST=0.9981;RSQ=0.9793;ERATE=0.0003;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 133976044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133976104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133976128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6139;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0004;THETA=0.0040;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 133976231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.4570;AVGPOST=0.9911;RSQ=0.9868;ERATE=0.0006;THETA=0.0003;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 133976276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.915;LDAF=0.9035;AVGPOST=0.9750;RSQ=0.8975;ERATE=0.0020;THETA=0.0005;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 133976289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.6060;AVGPOST=0.9883;RSQ=0.9815;ERATE=0.0011;THETA=0.0005;AC=1326;AN=2184 GT:DS:GL:BD 0.60714287 1 1 133976299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2138;AVGPOST=0.9944;RSQ=0.9878;ERATE=0.0009;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 133976337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4492;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133976374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0103;AVGPOST=0.9901;RSQ=0.6232;ERATE=0.0006;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 133976449 . TG T 11501 PASS INDEL;BAVGPOST=0.975;BRSQ=0.956;LDAF=0.4615;AVGPOST=0.9431;RSQ=0.9182;ERATE=0.0077;THETA=0.0002;AC=1011;AN=2184 GT:DS:GL:BD 0.46291208 0 1 133976464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.658;LDAF=0.0075;AVGPOST=0.9926;RSQ=0.5991;ERATE=0.0017;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133976491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0375;AVGPOST=0.9980;RSQ=0.9758;ERATE=0.0005;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 133976499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0041;AVGPOST=0.9957;RSQ=0.5947;ERATE=0.0004;THETA=0.0028;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133976527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.939;LDAF=0.9112;AVGPOST=0.9814;RSQ=0.9133;ERATE=0.0035;THETA=0.0003;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 133976681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4805;ERATE=0.0005;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133976682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9331;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133976724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0802;AVGPOST=0.9979;RSQ=0.9893;ERATE=0.0004;THETA=0.0055;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 133976759 rs36042430 A ATT 63781 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6140;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0006;THETA=0.0004;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 133976800 . ATTTC A 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.5106;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133976845 . TG T 119 PASS INDEL;BAVGPOST=0.946;BRSQ=0.370;LDAF=0.0637;AVGPOST=0.9197;RSQ=0.4853;ERATE=0.0083;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 133976862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9218;AVGPOST=0.9970;RSQ=0.9830;ERATE=0.0005;THETA=0.0013;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 133976881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2060;AVGPOST=0.9917;RSQ=0.9830;ERATE=0.0007;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 133976936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.4676;AVGPOST=0.9821;RSQ=0.9744;ERATE=0.0024;THETA=0.0027;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 133976941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.933;LDAF=0.3045;AVGPOST=0.9887;RSQ=0.9797;ERATE=0.0007;THETA=0.0008;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 133976979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.937;LDAF=0.2667;AVGPOST=0.9896;RSQ=0.9796;ERATE=0.0008;THETA=0.0005;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 133976990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9223;AVGPOST=0.9971;RSQ=0.9835;ERATE=0.0006;THETA=0.0013;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 133976993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.915;LDAF=0.1837;AVGPOST=0.9656;RSQ=0.9153;ERATE=0.0028;THETA=0.0008;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 133977018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.966;LDAF=0.9034;AVGPOST=0.9718;RSQ=0.8858;ERATE=0.0044;THETA=0.0016;AC=1992;AN=2184 GT:DS:GL:BD 0.91208792 1 1 133977058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.4833;ERATE=0.0008;THETA=0.0062;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133977100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2694;AVGPOST=0.9949;RSQ=0.9903;ERATE=0.0004;THETA=0.0030;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 133977144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.885;LDAF=0.8821;AVGPOST=0.9307;RSQ=0.7549;ERATE=0.0068;THETA=0.0020;AC=1964;AN=2184 GT:DS:GL:BD 0.89926738 1 1 133977250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.972;LDAF=0.0824;AVGPOST=0.9952;RSQ=0.9773;ERATE=0.0004;THETA=0.0065;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 133977280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0061;AVGPOST=0.9907;RSQ=0.4394;ERATE=0.0013;THETA=0.0055;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133977353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1629;AVGPOST=0.9962;RSQ=0.9891;ERATE=0.0005;THETA=0.0057;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 133977494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4676;AVGPOST=0.9920;RSQ=0.9890;ERATE=0.0010;THETA=0.0009;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 133977513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1252;AVGPOST=0.9964;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 133977612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8394;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133977637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0543;AVGPOST=0.9987;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 133977651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6215;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133977677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5908;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133977690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4819;AVGPOST=0.9965;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=1055;AN=2184 GT:DS:GL:BD 0.48305860 0 1 133977692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0348;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0058;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 133977788 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8675;ERATE=0.0003;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133977956 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6032;ERATE=0.0011;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133978116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5677;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133978251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.9693;AVGPOST=0.9971;RSQ=0.9586;ERATE=0.0006;THETA=0.0032;AC=2120;AN=2184 GT:DS:GL:BD 0.97069597 1 1 133978427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9816;ERATE=0.0003;THETA=0.0048;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 133978469 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0742;AVGPOST=0.9980;RSQ=0.9902;ERATE=0.0004;THETA=0.0016;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 133978564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133978591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0097;AVGPOST=0.9967;RSQ=0.8654;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133978615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0241;AVGPOST=0.9951;RSQ=0.9320;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 133978661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1433;AVGPOST=0.9920;RSQ=0.9764;ERATE=0.0005;THETA=0.0010;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 133978773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0597;AVGPOST=0.9984;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 133978782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7552;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133978921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.9730;AVGPOST=0.9989;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 133978952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133978957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.9732;AVGPOST=0.9985;RSQ=0.9792;ERATE=0.0003;THETA=0.0067;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 133978968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0156;AVGPOST=0.9990;RSQ=0.9732;ERATE=0.0003;THETA=0.0008;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 133979008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6724;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133979228 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8695;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 133979234 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 133979258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9621;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 133979362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0197;AVGPOST=0.9986;RSQ=0.9706;ERATE=0.0005;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 133979367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0100;AVGPOST=0.9963;RSQ=0.8532;ERATE=0.0004;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 133979379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6421;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133979462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8730;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133979557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2114;AVGPOST=0.9977;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 133979595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6456;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133979668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7605;ERATE=0.0013;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133979753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9601;AVGPOST=0.9993;RSQ=0.9912;ERATE=0.0004;THETA=0.0005;AC=2097;AN=2184 GT:DS:GL:BD 0.96016484 1 1 133979873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5184;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0081;AVGPOST=0.9983;RSQ=0.9043;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 133979895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133979978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133980097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4170;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133980117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0033;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 133980126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133980479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.761;LDAF=0.9246;AVGPOST=0.9417;RSQ=0.6738;ERATE=0.0077;THETA=0.0002;AC=2061;AN=2184 GT:DS:GL:BD 0.94368130 1 1 133980785 . AAAGAC A 15100 PASS INDEL;BAVGPOST=0.965;BRSQ=0.912;LDAF=0.2236;AVGPOST=0.9727;RSQ=0.9445;ERATE=0.0011;THETA=0.0003;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 133980807 . AAGAC A 18361 PASS INDEL;BAVGPOST=0.966;BRSQ=0.916;LDAF=0.2288;AVGPOST=0.9713;RSQ=0.9439;ERATE=0.0009;THETA=0.0032;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 133980808 . ATC A 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5987;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133980901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0008;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133981018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6165;AVGPOST=0.9952;RSQ=0.9928;ERATE=0.0005;THETA=0.0002;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 133981086 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133981188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.3931;AVGPOST=0.9920;RSQ=0.9870;ERATE=0.0009;THETA=0.0002;AC=863;AN=2184 GT:DS:GL:BD 0.39514652 0 1 133981284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0040;AVGPOST=0.9930;RSQ=0.4004;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133981327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.4416;AVGPOST=0.9853;RSQ=0.9806;ERATE=0.0011;THETA=0.0002;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 133981344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133981478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9392;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133981542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7022;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133981752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133981810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.9175;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 133981818 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8015;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133981826 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9130;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133981863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2577;AVGPOST=0.9948;RSQ=0.9892;ERATE=0.0006;THETA=0.0004;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 133981876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9381;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 133982003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3890;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0008;THETA=0.0001;AC=850;AN=2184 GT:DS:GL:BD 0.38919413 0 1 133982317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133982352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133982456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6266;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133982480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5234;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133982575 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0795;AVGPOST=0.9936;RSQ=0.9716;ERATE=0.0004;THETA=0.0001;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 133982647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3880;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0005;THETA=0.0001;AC=848;AN=2184 GT:DS:GL:BD 0.38827839 0 1 133982752 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133982759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5858;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133982942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0066;AVGPOST=0.9965;RSQ=0.7940;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133982978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9211;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133983100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7927;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133983167 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5641;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133983199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0177;AVGPOST=0.9994;RSQ=0.9874;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 133983717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5678;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133983724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8381;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133983881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0214;AVGPOST=0.9927;RSQ=0.8718;ERATE=0.0005;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 133983970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3970;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 133984149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0200;AVGPOST=0.9985;RSQ=0.9703;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 133984150 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133984263 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6843;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133984285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8050;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133984350 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1106;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 133984543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6949;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133984574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5084;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133984577 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.8961;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133984621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4832;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133984625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1087;AVGPOST=0.9987;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 133984635 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6429;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133984662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4289;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133984754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5320;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133984849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.442;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6979;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133984861 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8538;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133984973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5224;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133985063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0209;AVGPOST=0.9982;RSQ=0.9696;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 133985072 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.3944;AVGPOST=0.9887;RSQ=0.9813;ERATE=0.0033;THETA=0.0002;AC=863;AN=2184 GT:DS:GL:BD 0.39514652 0 1 133985083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6855;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133985103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0084;AVGPOST=0.9980;RSQ=0.9045;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 133985133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0075;AVGPOST=0.9957;RSQ=0.7703;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133985158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0576;AVGPOST=0.9989;RSQ=0.9920;ERATE=0.0004;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 133985291 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9334;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 133985300 rs61536905 CA C 4243 PASS INDEL;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0431;AVGPOST=0.9947;RSQ=0.9547;ERATE=0.0008;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 133985535 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133985593 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133985810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8467;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133985900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133985943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1105;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0003;THETA=0.0008;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 133985953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6207;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133985968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133986119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4362;AVGPOST=0.9974;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=954;AN=2184 GT:DS:GL:BD 0.43681318 0 1 133986189 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4332;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0007;THETA=0.0007;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 133986229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0214;AVGPOST=0.9970;RSQ=0.9498;ERATE=0.0003;THETA=0.0020;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 133986299 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0074;AVGPOST=0.9976;RSQ=0.8747;ERATE=0.0003;THETA=0.0037;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 133986469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5910;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133986482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7801;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133986500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6819;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133986564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6563;ERATE=0.0003;THETA=0.0111;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133986594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7217;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8876;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133986657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0034;AVGPOST=0.9950;RSQ=0.4057;ERATE=0.0014;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0153;AVGPOST=0.9984;RSQ=0.9571;ERATE=0.0004;THETA=0.0011;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 133986823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5707;ERATE=0.0004;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133986882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.502;LDAF=0.0034;AVGPOST=0.9959;RSQ=0.5233;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133986909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.514;LDAF=0.0083;AVGPOST=0.9902;RSQ=0.5425;ERATE=0.0009;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133986988 rs35224831 C CA 1927 PASS INDEL;BAVGPOST=0.547;BRSQ=0.219;LDAF=0.5079;AVGPOST=0.7781;RSQ=0.6507;ERATE=0.0059;THETA=0.0003;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 133987039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0397;AVGPOST=0.9990;RSQ=0.9898;ERATE=0.0005;THETA=0.0006;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 133987079 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5019;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133987096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9042;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133987132 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9560;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133987149 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133987170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1449;AVGPOST=0.9982;RSQ=0.9956;ERATE=0.0004;THETA=0.0037;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 133987429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9992;RSQ=0.9774;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 133987478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2883;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0004;THETA=0.0007;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 133987495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133987522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133987543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133987570 . GC G 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4193;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133987671 . TTAA T 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4121;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133987673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0401;AVGPOST=0.9989;RSQ=0.9893;ERATE=0.0004;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 133987711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2115;AVGPOST=0.9971;RSQ=0.9938;ERATE=0.0004;THETA=0.0005;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 133987829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9752;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 133988204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133988268 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0173;AVGPOST=0.9989;RSQ=0.9685;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 133988353 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7662;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133988643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9610;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 133988671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133988678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.816;LDAF=0.0066;AVGPOST=0.9984;RSQ=0.9011;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133988729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8866;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133988762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0469;AVGPOST=0.9992;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 133988779 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7648;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133988869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.5538;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989081 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5364;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989137 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8156;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133989329 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 133989341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6454;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0006;THETA=0.0005;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 133989490 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5395;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133989613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0009;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 133989665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.2535;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0006;THETA=0.0003;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 133989703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6432;AVGPOST=0.9950;RSQ=0.9912;ERATE=0.0006;THETA=0.0004;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 133989829 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989893 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7402;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133989903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989904 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4939;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133989959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9341;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 133989994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1060;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 133990048 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.677;LDAF=0.0054;AVGPOST=0.9948;RSQ=0.6778;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133990152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6454;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0030;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 133990289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6458;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0005;THETA=0.0060;AC=1412;AN=2184 GT:DS:GL:BD 0.64652014 1 1 133990326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9129;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133990341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6297;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133990419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133990550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133990566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7202;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133990955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133990992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9512;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 133991007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0069;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133991099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4592;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133991104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0318;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0004;THETA=0.0039;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 133991118 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0173;AVGPOST=0.9979;RSQ=0.9556;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 133991163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6786;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=1483;AN=2184 GT:DS:GL:BD 0.67902929 1 1 133991345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8516;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133991354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9434;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133991367 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0290;AVGPOST=0.9977;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 133991369 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9615;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133991485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8396;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133991545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8580;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133991560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0073;AVGPOST=0.9989;RSQ=0.9312;ERATE=0.0007;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 133991573 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8945;ERATE=0.0005;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133991644 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133991713 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0114;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 133991716 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.837;LDAF=0.0097;AVGPOST=0.9970;RSQ=0.8721;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 133991729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133991764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9576;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133991821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8720;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133991822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.9184;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133991846 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5858;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133991847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1633;AVGPOST=0.9971;RSQ=0.9923;ERATE=0.0006;THETA=0.0007;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 133991915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7880;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133991933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8332;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133992114 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133992130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9408;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133992178 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5028;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=1098;AN=2184 GT:DS:GL:BD 0.50274724 1 1 133992353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6776;AVGPOST=0.9980;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=1481;AN=2184 GT:DS:GL:BD 0.67811358 1 1 133992374 . TC T 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133992453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133992496 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7795;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133992602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1643;AVGPOST=0.9982;RSQ=0.9947;ERATE=0.0004;THETA=0.0003;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 133992620 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0080;AVGPOST=0.9990;RSQ=0.9440;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 133992699 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133992761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6786;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 133992785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0003;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133992823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0003;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133992867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6764;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0053;AC=1477;AN=2184 GT:DS:GL:BD 0.67628205 1 1 133992895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133993006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0159;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0242;AVGPOST=0.9996;RSQ=0.9938;ERATE=0.0004;THETA=0.0035;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 133993292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.6643;AVGPOST=0.9912;RSQ=0.9877;ERATE=0.0006;THETA=0.0127;AC=1448;AN=2184 GT:DS:GL:BD 0.66300368 1 1 133993538 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.6758;AVGPOST=0.9888;RSQ=0.9828;ERATE=0.0056;THETA=0.0011;AC=1478;AN=2184 GT:DS:GL:BD 0.67673993 1 1 133993622 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5195;ERATE=0.0004;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993683 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133993852 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8034;ERATE=0.0003;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133993873 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9022;ERATE=0.0003;THETA=0.0090;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133993993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8499;ERATE=0.0004;THETA=0.0047;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 133994053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8353;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133994093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0532;AVGPOST=0.9972;RSQ=0.9806;ERATE=0.0003;THETA=0.0030;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 133994101 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.948;LDAF=0.0586;AVGPOST=0.9928;RSQ=0.9501;ERATE=0.0006;THETA=0.0033;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 133994200 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133994320 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0529;AVGPOST=0.9965;RSQ=0.9735;ERATE=0.0007;THETA=0.0044;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 133994421 . CAG C 173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6797;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133994440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.971;LDAF=0.5518;AVGPOST=0.9778;RSQ=0.9678;ERATE=0.0010;THETA=0.0030;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 133994599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0240;AVGPOST=0.9994;RSQ=0.9889;ERATE=0.0003;THETA=0.0026;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 133994677 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133994768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133994806 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0239;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 133994861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8035;ERATE=0.0006;THETA=0.0113;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133994881 . TA T 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4782;ERATE=0.0004;THETA=0.0057;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 133994918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133995141 . AGG A 128 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6574;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133995311 . GT G 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7187;ERATE=0.0003;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133995318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0150;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133995339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133995365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133995552 . CT C 1619 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0085;AVGPOST=0.9979;RSQ=0.8909;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 133995616 . AG A 1674 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0082;AVGPOST=0.9985;RSQ=0.9238;ERATE=0.0003;THETA=0.0076;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 133995618 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133995890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0015;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 133995992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133996060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0083;AVGPOST=0.9986;RSQ=0.9377;ERATE=0.0003;THETA=0.0081;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 133996086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9298;ERATE=0.0003;THETA=0.0049;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 133996140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133996159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.5012;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133996423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7703;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133996430 . TTATAAA T 237 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4769;ERATE=0.0004;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133996506 . GA G 602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0133;AVGPOST=0.9953;RSQ=0.8544;ERATE=0.0006;THETA=0.0018;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 133996649 . AAC A 147 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0104;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133996883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.9298;AVGPOST=0.9956;RSQ=0.9734;ERATE=0.0003;THETA=0.0232;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 133997005 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6409;ERATE=0.0003;THETA=0.0094;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 133997045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.973;LDAF=0.0489;AVGPOST=0.9942;RSQ=0.9545;ERATE=0.0004;THETA=0.0087;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 133997104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.925;LDAF=0.0297;AVGPOST=0.9963;RSQ=0.9451;ERATE=0.0003;THETA=0.0086;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 133997130 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7314;ERATE=0.0003;THETA=0.0149;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133997208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0108;AVGPOST=0.9990;RSQ=0.9610;ERATE=0.0003;THETA=0.0176;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 133997212 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.925;LDAF=0.1776;AVGPOST=0.9691;RSQ=0.9240;ERATE=0.0032;THETA=0.0396;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 133997367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.634;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5713;ERATE=0.0005;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133997428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133997514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.921;LDAF=0.0792;AVGPOST=0.9870;RSQ=0.9343;ERATE=0.0018;THETA=0.0200;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 133997620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0191;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133997661 rs113217792 T TA 1431 PASS INDEL;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0186;AVGPOST=0.9961;RSQ=0.9363;ERATE=0.0005;THETA=0.0271;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 133997733 . A AAT 50 PASS INDEL;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.6371;ERATE=0.0007;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133997737 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0211;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133997763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.909;LDAF=0.3804;AVGPOST=0.9496;RSQ=0.9291;ERATE=0.0024;THETA=0.0049;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 133997778 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4661;ERATE=0.0004;THETA=0.0157;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133997816 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133997916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0074;AVGPOST=0.9994;RSQ=0.9703;ERATE=0.0003;THETA=0.0118;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 133998120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6472;ERATE=0.0003;THETA=0.0156;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133998202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8934;ERATE=0.0003;THETA=0.0257;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133998369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0840;AVGPOST=0.9964;RSQ=0.9827;ERATE=0.0005;THETA=0.0109;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 133998404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3718;AVGPOST=0.9959;RSQ=0.9937;ERATE=0.0004;THETA=0.0007;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 133998408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133998419 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6861;ERATE=0.0006;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133998427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3705;AVGPOST=0.9972;RSQ=0.9952;ERATE=0.0004;THETA=0.0022;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 133998480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0050;AVGPOST=0.9955;RSQ=0.6649;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133998504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0075;AVGPOST=0.9977;RSQ=0.8983;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 133998508 . CAA C 974 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0004;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 133998536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8281;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 133998555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5922;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133998581 rs36019202 CA C 41581 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3701;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0007;THETA=0.0007;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 133998598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6692;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133998602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133998678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6764;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133998811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3487;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 133998848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3487;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0008;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 133998900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9281;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 133998994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133999028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8342;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133999134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133999136 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133999137 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7909;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133999167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3705;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0004;THETA=0.0007;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 133999258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7020;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133999293 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3706;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 133999330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 133999356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2059;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 133999392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1231;AVGPOST=0.9985;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 133999482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0460;AVGPOST=0.9973;RSQ=0.9795;ERATE=0.0005;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 133999502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5311;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 133999529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8524;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 133999541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 133999615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 133999638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1233;AVGPOST=0.9990;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 133999685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0059;AVGPOST=0.9989;RSQ=0.9201;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 133999687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0836;AVGPOST=0.9984;RSQ=0.9917;ERATE=0.0004;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 133999689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0037;AVGPOST=0.9994;RSQ=0.9275;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 133999744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3701;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0006;THETA=0.0006;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 134000032 . G GT 242 PASS INDEL;BAVGPOST=0.998;BRSQ=0.735;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.6663;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134000049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9360;AVGPOST=0.9988;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 134000058 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134000109 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9642;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134000302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9485;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134000333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2059;AVGPOST=0.9981;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 134000356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3705;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0007;THETA=0.0002;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 134000390 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.6199;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000516 . G GT 81 PASS INDEL;BAVGPOST=0.953;BRSQ=0.405;LDAF=0.0245;AVGPOST=0.9745;RSQ=0.6010;ERATE=0.0013;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134000615 . T TA 11755 PASS INDEL;BAVGPOST=0.990;BRSQ=0.967;LDAF=0.1541;AVGPOST=0.9779;RSQ=0.9422;ERATE=0.0050;THETA=0.0005;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 134000617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6684;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6602;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5213;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1229;AVGPOST=0.9991;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 134000707 . C CT 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0081;AVGPOST=0.9891;RSQ=0.4724;ERATE=0.0023;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134000729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3699;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0004;THETA=0.0001;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 134000743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.7059;AVGPOST=0.9960;RSQ=0.9931;ERATE=0.0006;THETA=0.0002;AC=1544;AN=2184 GT:DS:GL:BD 0.70695972 1 1 134000760 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3586;AVGPOST=0.9968;RSQ=0.9942;ERATE=0.0007;THETA=0.0004;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 134000908 rs68129435 C CA 5232 PASS INDEL;BAVGPOST=0.663;BRSQ=0.375;LDAF=0.4984;AVGPOST=0.6903;RSQ=0.4512;ERATE=0.0391;THETA=0.0002;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 134000914 . AT A 41516 PASS INDEL;BAVGPOST=0.993;BRSQ=0.945;LDAF=0.9333;AVGPOST=0.9845;RSQ=0.9064;ERATE=0.0015;THETA=0.0005;AC=2048;AN=2184 GT:DS:GL:BD 0.93772894 1 1 134000931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7401;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134000958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7826;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134000971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=1.000;LDAF=0.5755;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0006;THETA=0.0005;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 134001048 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.999;LDAF=0.5759;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 134001087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134001097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6692;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134001227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8170;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134001257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134001380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8966;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134001387 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134001429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134001466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.862;LDAF=0.7432;AVGPOST=0.9168;RSQ=0.8382;ERATE=0.0180;THETA=0.0003;AC=1660;AN=2184 GT:DS:GL:BD 0.76007324 1 1 134001641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6456;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134001666 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0112;AVGPOST=0.9952;RSQ=0.8106;ERATE=0.0037;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134001827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5566;AVGPOST=0.9957;RSQ=0.9929;ERATE=0.0011;THETA=0.0004;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 134001848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002139 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1477;AVGPOST=0.9974;RSQ=0.9918;ERATE=0.0019;THETA=0.0007;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 134002263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8853;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134002319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8922;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134002347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002402 . TC T 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.4039;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0068;AVGPOST=0.9986;RSQ=0.9127;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134002478 . C CT 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4222;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0041;AVGPOST=0.9975;RSQ=0.7535;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134002582 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134002721 . AT A 9445 PASS INDEL;BAVGPOST=0.995;BRSQ=0.455;LDAF=0.9893;AVGPOST=0.9872;RSQ=0.5273;ERATE=0.0017;THETA=0.0003;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 134002782 . AT A 129 PASS INDEL;BAVGPOST=0.994;BRSQ=0.579;LDAF=0.0179;AVGPOST=0.9827;RSQ=0.6305;ERATE=0.0013;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134002786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5661;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134003073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9536;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134003095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134003150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134003347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134003408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134003409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1639;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 134003597 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134003686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134003708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134003735 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134003850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134003885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8041;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134003951 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9494;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134004002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134004055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0040;AVGPOST=0.9970;RSQ=0.7261;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134004153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134004184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0165;AVGPOST=0.9978;RSQ=0.9429;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134004292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.531;LDAF=0.0045;AVGPOST=0.9947;RSQ=0.5382;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134004333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0140;AVGPOST=0.9989;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134004382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9922;ERATE=0.0003;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134004543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1626;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0004;THETA=0.0008;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 134004610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0041;AVGPOST=0.9962;RSQ=0.6267;ERATE=0.0010;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134004611 . C CGA 4718 PASS INDEL;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0301;AVGPOST=0.9966;RSQ=0.9572;ERATE=0.0005;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134004613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8181;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134004672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134004896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.8347;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134004963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134004975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0173;AVGPOST=0.9991;RSQ=0.9839;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134005136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0108;AVGPOST=0.9991;RSQ=0.9659;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134005151 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5018;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 134005174 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.8971;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134005238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7342;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0004;THETA=0.0013;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 134005268 . TC T 634 PASS INDEL;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0134;AVGPOST=0.9992;RSQ=0.9738;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134005305 . TC T 626 PASS INDEL;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0146;AVGPOST=0.9984;RSQ=0.9517;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134005307 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134005342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7311;AVGPOST=0.9958;RSQ=0.9915;ERATE=0.0008;THETA=0.0004;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 134005450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7725;AVGPOST=0.9964;RSQ=0.9921;ERATE=0.0006;THETA=0.0004;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 134005479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9640;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134005551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134005561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134005598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7315;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 134005612 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134005694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134005729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0131;AVGPOST=0.9995;RSQ=0.9837;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134005787 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1329;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 134005805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8742;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134005856 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9673;ERATE=0.0003;THETA=0.0045;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134005861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9635;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134005862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9980;RSQ=0.9450;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134005886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134006029 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7561;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0005;THETA=0.0006;AC=1651;AN=2184 GT:DS:GL:BD 0.75595236 1 1 134006120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7449;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134006123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0093;AVGPOST=0.9964;RSQ=0.8541;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134006182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8884;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134006183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9994;RSQ=0.9819;ERATE=0.0004;THETA=0.0021;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134006219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.7624;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134006348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3742;AVGPOST=0.9968;RSQ=0.9956;ERATE=0.0007;THETA=0.0003;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 134006373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9325;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134006377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7354;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134006409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134006423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134006431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134006496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5543;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134006582 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3766;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 134006619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134006691 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7894;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134006692 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3738;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 134006723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0455;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 134006756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134006761 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134006768 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6099;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 134006828 . CT C 299 PASS INDEL;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5846;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134006884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7240;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134006946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9687;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134007053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134007163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0664;AVGPOST=0.9968;RSQ=0.9778;ERATE=0.0005;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 134007205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5544;ERATE=0.0012;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134007345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0035;AVGPOST=0.9952;RSQ=0.4501;ERATE=0.0008;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134007357 rs113967390 C CA 2460 PASS INDEL;BAVGPOST=0.961;BRSQ=0.815;LDAF=0.1192;AVGPOST=0.9872;RSQ=0.9562;ERATE=0.0008;THETA=0.0005;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 134007374 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.939;LDAF=0.1247;AVGPOST=0.9891;RSQ=0.9660;ERATE=0.0009;THETA=0.0002;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134007412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.916;LDAF=0.0668;AVGPOST=0.9939;RSQ=0.9599;ERATE=0.0010;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 134007487 . A AAAC 1104 PASS INDEL;BAVGPOST=0.996;BRSQ=0.875;LDAF=0.0200;AVGPOST=0.9903;RSQ=0.7947;ERATE=0.0010;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134007531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.5987;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134007694 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8292;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0006;THETA=0.0003;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 134007972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0755;AVGPOST=0.9993;RSQ=0.9952;ERATE=0.0004;THETA=0.0005;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 134007999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134008017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0054;AVGPOST=0.9980;RSQ=0.8377;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134008049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008177 . TCA T 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134008318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008351 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6591;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0364;AVGPOST=0.9991;RSQ=0.9884;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134008472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134008476 . T TG 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.4929;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134008492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7159;ERATE=0.0010;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134008525 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134008591 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3729;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0006;THETA=0.0007;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134008593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0550;AVGPOST=0.9979;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 134008669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134008717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5001;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134008719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9298;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134008776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3732;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0002;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134008796 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0123;AVGPOST=0.9983;RSQ=0.9432;ERATE=0.0004;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134008814 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134008873 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3733;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 134008885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134008900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9284;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134008945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9992;RSQ=0.9346;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134008954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0598;AVGPOST=0.9991;RSQ=0.9929;ERATE=0.0004;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134008982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6860;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134009046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0148;AVGPOST=0.9980;RSQ=0.9410;ERATE=0.0006;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134009061 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134009097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7085;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134009148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3731;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134009170 . TC T 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4813;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134009193 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.3558;AVGPOST=0.9856;RSQ=0.9802;ERATE=0.0004;THETA=0.0002;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 134009347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.3562;AVGPOST=0.9855;RSQ=0.9799;ERATE=0.0007;THETA=0.0005;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 134009348 . G GT 892 PASS INDEL;BAVGPOST=0.881;BRSQ=0.423;LDAF=0.1367;AVGPOST=0.8590;RSQ=0.5432;ERATE=0.0240;THETA=0.0004;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 134009426 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.974;LDAF=0.3713;AVGPOST=0.9965;RSQ=0.9943;ERATE=0.0008;THETA=0.0014;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 134009435 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3730;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134009627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0291;AVGPOST=0.9992;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134009644 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3725;AVGPOST=0.9974;RSQ=0.9961;ERATE=0.0006;THETA=0.0002;AC=813;AN=2184 GT:DS:GL:BD 0.37225273 0 1 134009662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3732;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 134009688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134009874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7222;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134009900 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3733;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0007;THETA=0.0003;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 134009963 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134009978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0542;AVGPOST=0.9989;RSQ=0.9904;ERATE=0.0003;THETA=0.0002;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 134009984 . CA C 540 PASS INDEL;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9637;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134009984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3730;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010045 . TTAGA T 201 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4853;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134010168 rs78356622 GA G 35076 PASS INDEL;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3731;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134010224 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3744;AVGPOST=0.9958;RSQ=0.9934;ERATE=0.0009;THETA=0.0003;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 134010238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0225;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134010286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3736;AVGPOST=0.9973;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134010392 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0596;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134010482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134010531 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0068;AVGPOST=0.9998;RSQ=0.9876;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134010540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3729;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5374;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134010642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3740;AVGPOST=0.9970;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010716 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134010806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3731;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=814;AN=2184 GT:DS:GL:BD 0.37271062 0 1 134010807 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134010825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8305;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134010888 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6514;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134010928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134010972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134010992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1243;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 134010993 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8654;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134011002 . C CT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134011021 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0605;AVGPOST=0.9990;RSQ=0.9918;ERATE=0.0004;THETA=0.0003;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134011029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3710;AVGPOST=0.9975;RSQ=0.9958;ERATE=0.0007;THETA=0.0003;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 134011112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0224;AVGPOST=0.9990;RSQ=0.9831;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134011197 . C CT 82 PASS INDEL;BAVGPOST=0.996;BRSQ=0.492;LDAF=0.0071;AVGPOST=0.9894;RSQ=0.4360;ERATE=0.0020;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134011235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0170;AVGPOST=0.9943;RSQ=0.8860;ERATE=0.0006;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134011311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9446;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134011312 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9994;RSQ=0.9601;ERATE=0.0003;THETA=0.0001;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134011407 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8459;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134011441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134011469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9972;RSQ=0.4901;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134011805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7145;AVGPOST=0.9929;RSQ=0.9857;ERATE=0.0013;THETA=0.0007;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 134011874 . T TTA 5126 PASS INDEL;BAVGPOST=0.993;BRSQ=0.943;LDAF=0.0626;AVGPOST=0.9966;RSQ=0.9753;ERATE=0.0008;THETA=0.0002;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134012052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0030;AVGPOST=0.9972;RSQ=0.6586;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134012216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2172;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0003;THETA=0.0002;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 134012242 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.860;LDAF=0.0171;AVGPOST=0.9974;RSQ=0.9402;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134012252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5379;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134012278 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0072;AVGPOST=0.9924;RSQ=0.6124;ERATE=0.0010;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134012291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4961;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134012342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134012404 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4739;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134012497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0114;AVGPOST=0.9988;RSQ=0.9496;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134012508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=0.9974;RSQ=0.7508;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134012521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1520;AVGPOST=0.9968;RSQ=0.9906;ERATE=0.0006;THETA=0.0002;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 134012543 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6151;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134012586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134012588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0653;AVGPOST=0.9981;RSQ=0.9899;ERATE=0.0003;THETA=0.0002;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134012672 . CT C 210 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.4092;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134012689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134012775 . T TC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134012778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0527;AVGPOST=0.9944;RSQ=0.9612;ERATE=0.0003;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134012904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4733;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134013019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134013044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9214;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134013175 . CAT C 324 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8616;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134013189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0643;AVGPOST=0.9987;RSQ=0.9903;ERATE=0.0006;THETA=0.0002;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134013292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6446;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134013317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0653;AVGPOST=0.9981;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134013565 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6764;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134013674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5913;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134013678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134013724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8258;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134013970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1451;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134014008 . T TA 136 PASS INDEL;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6802;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134014039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134014126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7182;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1568;AN=2184 GT:DS:GL:BD 0.71794873 1 1 134014157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134014174 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8133;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134014232 . AT A 207 PASS INDEL;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8192;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134014306 . AC A 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6931;ERATE=0.0003;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134014328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7874;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134014411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0085;AVGPOST=0.9988;RSQ=0.9413;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134014496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134014509 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9250;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134014530 . CAGAG C 777 PASS INDEL;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0058;AVGPOST=0.9950;RSQ=0.6609;ERATE=0.0006;THETA=0.0001;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134014630 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134014637 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4578;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134014694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134014695 rs112566201 A AG 101858 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9991;AVGPOST=0.9983;RSQ=0.2724;ERATE=0.0003;THETA=0.0002;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 134014712 rs67508003 TAAATTC T 33457 PASS INDEL;BAVGPOST=0.987;BRSQ=0.971;LDAF=0.2798;AVGPOST=0.9841;RSQ=0.9695;ERATE=0.0023;THETA=0.0002;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 134014906 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6140;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134014979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6993;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134014995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.949;LDAF=0.1402;AVGPOST=0.9895;RSQ=0.9682;ERATE=0.0007;THETA=0.0002;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 134015132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0328;AVGPOST=0.9990;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134015241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134015275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6802;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134015328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9515;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134015412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0218;AVGPOST=0.9974;RSQ=0.9559;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134015426 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134015497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134015551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0001;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134015563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9615;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134015762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1147;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0001;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 134015873 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9516;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134016063 . AG A 4949 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0723;AVGPOST=0.9963;RSQ=0.9805;ERATE=0.0006;THETA=0.0004;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 134016115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.7015;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134016204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7946;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134016322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0348;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0002;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 134016339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.8932;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134016350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.918;LDAF=0.0140;AVGPOST=0.9978;RSQ=0.9287;ERATE=0.0004;THETA=0.0018;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134016441 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134016498 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6946;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134016708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0846;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 134016746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.8012;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134016758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0513;AVGPOST=0.9996;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134016899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134016944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134016952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134017269 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6884;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134017331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8440;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134017688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0053;AVGPOST=0.9970;RSQ=0.7957;ERATE=0.0006;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134017720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.847;LDAF=0.0145;AVGPOST=0.9952;RSQ=0.8892;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134017730 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4566;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134017733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.862;LDAF=0.2681;AVGPOST=0.9165;RSQ=0.8468;ERATE=0.0142;THETA=0.0002;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 134017735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.338;LDAF=0.0588;AVGPOST=0.9223;RSQ=0.4308;ERATE=0.0086;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134017787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.386;LDAF=0.1055;AVGPOST=0.8706;RSQ=0.4468;ERATE=0.0128;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 134017791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.370;LDAF=0.1925;AVGPOST=0.7776;RSQ=0.3819;ERATE=0.0362;THETA=0.0004;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 134017795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.375;LDAF=0.2741;AVGPOST=0.7291;RSQ=0.3940;ERATE=0.0551;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134017799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.872;BRSQ=0.501;LDAF=0.2234;AVGPOST=0.7740;RSQ=0.4459;ERATE=0.0386;THETA=0.0003;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 134017803 . C CT 26 PASS INDEL;BAVGPOST=0.997;BRSQ=0.305;LDAF=0.0270;AVGPOST=0.9691;RSQ=0.5437;ERATE=0.0023;THETA=0.0016;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134017833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4685;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 134018032 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.925;LDAF=0.0318;AVGPOST=0.9955;RSQ=0.9467;ERATE=0.0005;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134018083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7403;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134018141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9517;ERATE=0.0003;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134018160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3203;AVGPOST=0.9969;RSQ=0.9948;ERATE=0.0009;THETA=0.0047;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 134018237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134018256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134018270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134018364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3226;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0006;THETA=0.0003;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 134018572 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4174;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134018693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6905;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134018728 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134018743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134018918 . CT C 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5623;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134018938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6780;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134018947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0944;AVGPOST=0.9985;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 134019172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3285;AVGPOST=0.9936;RSQ=0.9891;ERATE=0.0013;THETA=0.0004;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 134019274 rs71095914 TA T 8559 PASS INDEL;BAVGPOST=0.838;BRSQ=0.678;LDAF=0.3928;AVGPOST=0.7350;RSQ=0.5451;ERATE=0.0659;THETA=0.0006;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 134019366 rs34598921 T TA 2080 PASS INDEL;BAVGPOST=0.870;BRSQ=0.615;LDAF=0.2187;AVGPOST=0.8102;RSQ=0.5794;ERATE=0.0236;THETA=0.0003;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 134019368 . T TA 284 PASS INDEL;BAVGPOST=0.984;BRSQ=0.643;LDAF=0.0224;AVGPOST=0.9851;RSQ=0.7564;ERATE=0.0012;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134019369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.549;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.5752;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134019411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0502;AVGPOST=0.9984;RSQ=0.9890;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134019473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0051;AVGPOST=0.9979;RSQ=0.8354;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134019486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134019767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0888;AVGPOST=0.9982;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134019835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134019916 rs78728328 GAT G 39043 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2259;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 134020040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134020126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134020141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134020168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9549;AVGPOST=0.9910;RSQ=0.9233;ERATE=0.0014;THETA=0.0009;AC=2089;AN=2184 GT:DS:GL:BD 0.95650184 1 1 134020198 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0672;AVGPOST=0.9983;RSQ=0.9894;ERATE=0.0004;THETA=0.0002;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 134020235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.937;LDAF=0.0364;AVGPOST=0.9955;RSQ=0.9494;ERATE=0.0005;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134020272 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134020309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5633;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134020358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4561;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134020501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0499;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0002;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134020521 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134020561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7299;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134020570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0002;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134020583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134020623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5819;AVGPOST=0.9967;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 134020676 . T TAG 12039 PASS INDEL;BAVGPOST=0.982;BRSQ=0.965;LDAF=0.3089;AVGPOST=0.9727;RSQ=0.9560;ERATE=0.0044;THETA=0.0003;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134020737 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134020754 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134020883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.512;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7359;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134020919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134021239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134021246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134021429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0180;AVGPOST=0.9992;RSQ=0.9816;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134021459 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9161;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134021477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134021522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8603;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134021544 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134021570 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0102;AVGPOST=0.9984;RSQ=0.9375;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134021613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.957;LDAF=0.1266;AVGPOST=0.9757;RSQ=0.9184;ERATE=0.0076;THETA=0.0038;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134021614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134021667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9167;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134021688 . TC T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134021735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134021845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7173;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134021850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134021871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0059;AVGPOST=0.9957;RSQ=0.7290;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134021916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9054;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134021952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7632;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134022169 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5095;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134022185 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134022240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134022633 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8025;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134022638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134022726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9751;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134022849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.712;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.7354;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134022850 . CACTT C 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6561;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134022887 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9724;ERATE=0.0002;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134023066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7355;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134023140 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134023272 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134023487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0093;AVGPOST=0.9983;RSQ=0.9312;ERATE=0.0003;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134023677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5713;ERATE=0.0002;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134023740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.8847;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134024008 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0028;AVGPOST=0.9967;RSQ=0.5336;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134024032 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.656;LDAF=0.0048;AVGPOST=0.9962;RSQ=0.7059;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134024038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.7944;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134024050 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134024133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8254;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134024228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134024270 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134024271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9771;ERATE=0.0002;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134024343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7640;ERATE=0.0002;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134024487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134024609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0178;AVGPOST=0.9995;RSQ=0.9871;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134024660 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8690;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134024842 . CT C 413 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8958;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134024909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134024931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134024997 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025099 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0536;AVGPOST=0.9987;RSQ=0.9890;ERATE=0.0002;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134025187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0179;AVGPOST=0.9984;RSQ=0.9691;ERATE=0.0002;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134025199 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0172;AVGPOST=0.9984;RSQ=0.9669;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134025209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025210 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9220;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134025212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0339;AVGPOST=0.9979;RSQ=0.9747;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134025216 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7667;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134025291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0132;AVGPOST=0.9979;RSQ=0.9417;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134025452 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7173;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0975;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 134025668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134025681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025723 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134025802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9101;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134025895 . AT A 157 PASS INDEL;BAVGPOST=0.996;BRSQ=0.596;LDAF=0.0072;AVGPOST=0.9945;RSQ=0.6725;ERATE=0.0008;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134025935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.6200;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134026141 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4888;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134026190 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.8903;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134026291 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134026301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134026388 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7359;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134026471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9769;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134026515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134026720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5683;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 134026750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8582;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134026796 . TTTTC T 1834 PASS INDEL;BAVGPOST=0.982;BRSQ=0.864;LDAF=0.0652;AVGPOST=0.9707;RSQ=0.8218;ERATE=0.0031;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 134026941 . AG A 4948 PASS INDEL;BAVGPOST=0.976;BRSQ=0.799;LDAF=0.0470;AVGPOST=0.9795;RSQ=0.8402;ERATE=0.0005;THETA=0.0022;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134027057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3938;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134027235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0037;AVGPOST=0.9967;RSQ=0.6562;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134027263 . C CA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0035;AVGPOST=0.9968;RSQ=0.6179;ERATE=0.0009;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134027264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4847;AVGPOST=0.9951;RSQ=0.9935;ERATE=0.0006;THETA=0.0005;AC=1058;AN=2184 GT:DS:GL:BD 0.48443222 0 1 134027461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5703;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134027531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5671;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 134027535 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134027647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6954;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134027727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5615;AVGPOST=0.9972;RSQ=0.9961;ERATE=0.0006;THETA=0.0004;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 134027882 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8301;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134027910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134027924 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.682;LDAF=0.0109;AVGPOST=0.9942;RSQ=0.7774;ERATE=0.0007;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134028160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134028268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0088;AVGPOST=0.9952;RSQ=0.7776;ERATE=0.0006;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134028298 rs72017270 CTCCCTCCCTCCCT C 9359 PASS INDEL;BAVGPOST=0.993;BRSQ=0.935;LDAF=0.0549;AVGPOST=0.9889;RSQ=0.9115;ERATE=0.0012;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134028322 . TC T 1523 PASS INDEL;BAVGPOST=0.985;BRSQ=0.817;LDAF=0.0422;AVGPOST=0.9861;RSQ=0.8708;ERATE=0.0017;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134028340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134028595 . T TG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134028639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7507;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134028793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7459;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134028814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3256;AVGPOST=0.9952;RSQ=0.9931;ERATE=0.0007;THETA=0.0009;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 134028904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134028923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6679;ERATE=0.0013;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134029551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4587;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134029732 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.865;BRSQ=0.459;LDAF=0.1951;AVGPOST=0.8259;RSQ=0.4988;ERATE=0.0481;THETA=0.0005;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 134029764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.8679;AVGPOST=0.9980;RSQ=0.9931;ERATE=0.0007;THETA=0.0006;AC=1896;AN=2184 GT:DS:GL:BD 0.86813188 1 1 134029937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.755;LDAF=0.9606;AVGPOST=0.9668;RSQ=0.6650;ERATE=0.0045;THETA=0.0004;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 134029961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.7982;ERATE=0.0009;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134030107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0178;AVGPOST=0.9969;RSQ=0.9401;ERATE=0.0003;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134030119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8600;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134030198 rs67111190 AG A 5525 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0413;AVGPOST=0.9987;RSQ=0.9909;ERATE=0.0002;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134030198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.4338;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134030213 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0411;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0003;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134030296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134030427 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134030462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8684;AVGPOST=0.9996;RSQ=0.9987;ERATE=0.0003;THETA=0.0009;AC=1896;AN=2184 GT:DS:GL:BD 0.86813188 1 1 134030547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134030654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.8913;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134030710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134030722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7345;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134031068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3256;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0005;THETA=0.0003;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 134031096 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6449;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134031196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5432;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134031344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0344;AVGPOST=0.9990;RSQ=0.9870;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134031374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8574;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134031392 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8374;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134031425 . CAT C 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7258;ERATE=0.0006;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134031436 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134031493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134031522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9502;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134031530 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8339;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134031538 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0076;AVGPOST=0.9989;RSQ=0.9480;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134031862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.907;LDAF=0.0767;AVGPOST=0.9936;RSQ=0.9654;ERATE=0.0003;THETA=0.0031;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 134031962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.7085;AVGPOST=0.9931;RSQ=0.9877;ERATE=0.0003;THETA=0.0005;AC=1547;AN=2184 GT:DS:GL:BD 0.70833331 1 1 134032215 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2408;AVGPOST=0.9945;RSQ=0.9894;ERATE=0.0003;THETA=0.0010;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 134032216 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4927;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134032242 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9763;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134032279 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134032296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.8917;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134032331 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6347;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134032393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7882;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134032445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5270;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134032464 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9229;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134032485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6836;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134032534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.7039;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134032555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5163;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134032653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134032658 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134032669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134033066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134033249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0632;AVGPOST=0.9987;RSQ=0.9905;ERATE=0.0004;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134033396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134033412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6624;ERATE=0.0002;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134033461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2089;AVGPOST=0.9974;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 134033595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7202;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134033610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0057;AVGPOST=0.9992;RSQ=0.9324;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134033645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6760;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134033664 . AG A 75 PASS INDEL;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6700;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134033750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9478;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134033952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134033975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134033988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5445;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134034046 . AT A 1439 PASS INDEL;BAVGPOST=0.946;BRSQ=0.841;LDAF=0.1678;AVGPOST=0.9368;RSQ=0.8410;ERATE=0.0014;THETA=0.0006;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 134034047 rs60704623 TG T 24067 PASS INDEL;BAVGPOST=0.982;BRSQ=0.959;LDAF=0.1945;AVGPOST=0.9943;RSQ=0.9870;ERATE=0.0005;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 134034051 . GT G 1927 PASS INDEL;BAVGPOST=0.950;BRSQ=0.860;LDAF=0.1653;AVGPOST=0.9698;RSQ=0.9277;ERATE=0.0005;THETA=0.0018;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 134034054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8538;ERATE=0.0005;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134034197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1957;AVGPOST=0.9978;RSQ=0.9949;ERATE=0.0007;THETA=0.0005;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 134034235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0341;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0002;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134034243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8284;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134034284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4609;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134034296 . TGG T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5780;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134034366 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2289;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 134034470 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134034503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5074;AVGPOST=0.9968;RSQ=0.9956;ERATE=0.0003;THETA=0.0023;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 134034519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2092;AVGPOST=0.9975;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 134034528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.5569;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134034603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9493;AVGPOST=0.9988;RSQ=0.9898;ERATE=0.0005;THETA=0.0006;AC=2074;AN=2184 GT:DS:GL:BD 0.94963372 1 1 134034667 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9495;AVGPOST=0.9991;RSQ=0.9925;ERATE=0.0003;THETA=0.0007;AC=2074;AN=2184 GT:DS:GL:BD 0.94963372 1 1 134034698 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.791;LDAF=0.0122;AVGPOST=0.9963;RSQ=0.8897;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134034750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9691;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134034788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5572;ERATE=0.0004;THETA=0.0061;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134034897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1326;AVGPOST=0.9974;RSQ=0.9919;ERATE=0.0005;THETA=0.0007;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 134034901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.9934;AVGPOST=0.9989;RSQ=0.9297;ERATE=0.0003;THETA=0.0007;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 134034953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134034955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.6064;ERATE=0.0004;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134034960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134035046 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0084;AVGPOST=0.9991;RSQ=0.9619;ERATE=0.0002;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134035170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.0778;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134035254 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9579;AVGPOST=0.9955;RSQ=0.9567;ERATE=0.0007;THETA=0.0012;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 134035278 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6236;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134035311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6115;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134035387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.904;LDAF=0.0289;AVGPOST=0.9979;RSQ=0.9678;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134035497 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4147;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134035616 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134035630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6497;ERATE=0.0015;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134035657 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134035717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9997;RSQ=0.9852;ERATE=0.0002;THETA=0.0013;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134035747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134035756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9394;ERATE=0.0002;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134035876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7612;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134035886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0116;AVGPOST=0.9967;RSQ=0.8792;ERATE=0.0010;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134035890 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5919;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134035901 rs76589833 AC A 84097 PASS INDEL;BAVGPOST=0.994;BRSQ=0.603;LDAF=0.9862;AVGPOST=0.9851;RSQ=0.5707;ERATE=0.0048;THETA=0.0012;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 134035911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0080;AVGPOST=0.9981;RSQ=0.9018;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134036004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2089;AVGPOST=0.9971;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 134036045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8037;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134036064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134036182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5697;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134036203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134036419 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5084;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134036479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8546;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134036490 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6751;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134036498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0038;AVGPOST=0.9975;RSQ=0.7511;ERATE=0.0005;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134036811 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9122;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134037063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5423;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134037214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5870;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134037215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0081;AVGPOST=0.9972;RSQ=0.8652;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134037218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134037249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9216;ERATE=0.0004;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134037325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3846;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134037494 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134037705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134037988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8304;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134038009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134038110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6849;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134038273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3316;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 134038306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0080;AVGPOST=0.9980;RSQ=0.8951;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134038436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1310;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 134038461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7916;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134038573 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7638;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134038720 . TA T 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5045;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134038881 . A AT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4884;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134039153 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134039246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.891;LDAF=0.0177;AVGPOST=0.9967;RSQ=0.9256;ERATE=0.0006;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134039445 . ACGC A 86 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0038;AVGPOST=0.9950;RSQ=0.4765;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134039456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134039528 . GGCATTTGTACAAT G 16603 PASS INDEL;BAVGPOST=0.990;BRSQ=0.935;LDAF=0.0820;AVGPOST=0.9983;RSQ=0.9896;ERATE=0.0004;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 134039562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134039594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7299;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134039709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6733;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134039710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134039724 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7613;ERATE=0.0012;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134039857 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6347;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134040020 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134040046 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6277;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134040061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8281;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134040106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134040124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8669;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134040246 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4835;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134040269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8744;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134040496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6466;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134040806 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134040889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7079;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134040908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9610;ERATE=0.0003;THETA=0.0035;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134040938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134040943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9231;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134041059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2274;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 134041068 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041177 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8275;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134041246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134041306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3319;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 134041327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7602;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134041492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7071;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041688 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1599;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0034;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 134041765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134041804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0125;AVGPOST=0.9967;RSQ=0.8834;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134041860 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5743;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041868 . GC G 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5794;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134041874 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0002;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134042012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5619;AVGPOST=0.9991;RSQ=0.9988;ERATE=0.0003;THETA=0.0029;AC=1226;AN=2184 GT:DS:GL:BD 0.56135529 1 1 134042029 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134042067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0069;AVGPOST=0.9976;RSQ=0.8756;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134042182 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1459;AVGPOST=0.9977;RSQ=0.9930;ERATE=0.0005;THETA=0.0006;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 134042369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6165;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0005;THETA=0.0004;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 134042399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8960;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134042537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.8186;ERATE=0.0007;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134042730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134042859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7731;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134042918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8726;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134042956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0002;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134043025 . CCACGGA C 1429 PASS INDEL;BAVGPOST=0.997;BRSQ=0.845;LDAF=0.0091;AVGPOST=0.9984;RSQ=0.9233;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134043073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9988;RSQ=0.9683;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134043077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7309;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134043175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134043232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6008;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0006;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 134043254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134043635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6004;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0006;THETA=0.0003;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 134043719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6005;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=1311;AN=2184 GT:DS:GL:BD 0.60027474 1 1 134043832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7220;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134043883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134043932 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134043986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7287;ERATE=0.0004;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134044027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7468;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134044098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134044562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3878;AVGPOST=0.9984;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=846;AN=2184 GT:DS:GL:BD 0.38736263 0 1 134044679 rs61095558 ATCT A 4843 PASS INDEL;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0346;AVGPOST=0.9991;RSQ=0.9883;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 134044706 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134044730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6927;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134044738 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1720;AVGPOST=0.9973;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 134044765 . CTCATT C 242 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134044806 . A AT 16891 PASS INDEL;BAVGPOST=0.963;BRSQ=0.938;LDAF=0.5557;AVGPOST=0.9334;RSQ=0.9048;ERATE=0.0187;THETA=0.0005;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 134044874 rs75204597 T TA 58525 PASS INDEL;BAVGPOST=0.980;BRSQ=0.965;LDAF=0.5871;AVGPOST=0.9772;RSQ=0.9685;ERATE=0.0039;THETA=0.0006;AC=1284;AN=2184 GT:DS:GL:BD 0.58791208 1 1 134044875 . GGCT G 167 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134044923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.7955;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134045062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6001;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=1311;AN=2184 GT:DS:GL:BD 0.60027474 1 1 134045109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134045145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7116;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134045401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7664;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134045465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9951;ERATE=0.0002;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134045470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8430;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134045569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6609;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134045751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1710;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 134045820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134045822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7045;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134045988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6002;AVGPOST=0.9890;RSQ=0.9849;ERATE=0.0037;THETA=0.0004;AC=1311;AN=2184 GT:DS:GL:BD 0.60027474 1 1 134046040 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5501;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=1201;AN=2184 GT:DS:GL:BD 0.54990840 1 1 134046071 rs59033805 A AT 33794 PASS INDEL;BAVGPOST=0.971;BRSQ=0.953;LDAF=0.4383;AVGPOST=0.9587;RSQ=0.9442;ERATE=0.0093;THETA=0.0001;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 134046164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9615;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134046202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.981;LDAF=0.8047;AVGPOST=0.9962;RSQ=0.9903;ERATE=0.0008;THETA=0.0005;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 134046304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5039;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134046331 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0002;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134046398 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9614;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134046496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9086;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134046542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6122;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134046549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6597;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134046584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9414;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134046779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134046804 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3515;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0004;THETA=0.0002;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 134046970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134047147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1350;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0005;THETA=0.0003;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 134047271 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134047337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7931;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134047469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7890;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134047535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7641;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134047626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0636;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 134047755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134047778 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134047818 . A AT 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5532;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134047851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134047999 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8545;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134048049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5241;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048162 . C CA 726 PASS INDEL;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0055;AVGPOST=0.9965;RSQ=0.7468;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134048238 . T TC 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5430;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4919;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134048447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4727;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8541;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134048616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.7698;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134048669 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0160;AVGPOST=0.9986;RSQ=0.9711;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134048719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134048758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.9849;AVGPOST=0.9972;RSQ=0.9354;ERATE=0.0004;THETA=0.0003;AC=2151;AN=2184 GT:DS:GL:BD 0.98489010 1 1 134048773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0637;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 134048973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1075;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 134049113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4780;AVGPOST=0.9981;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=1044;AN=2184 GT:DS:GL:BD 0.47802198 0 1 134049129 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7000;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134049305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0279;AVGPOST=0.9981;RSQ=0.9761;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134049376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134049445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134049618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134049724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0179;AVGPOST=0.9989;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134049845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8862;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134049882 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134050000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134050282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6072;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134050488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134050609 rs68002709 TAAAG T 26313 PASS INDEL;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.2362;AVGPOST=0.9978;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 134050682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6568;AVGPOST=0.9979;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1436;AN=2184 GT:DS:GL:BD 0.65750915 1 1 134050696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134050863 . TG T 776 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134051016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134051079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1075;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 134051097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134051156 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8657;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134051205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0094;AVGPOST=0.9969;RSQ=0.8611;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134051470 . T TG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5135;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134051487 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9860;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134051687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134051741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134051760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0130;AVGPOST=0.9986;RSQ=0.9635;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134051780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4025;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0004;THETA=0.0009;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 134051781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7993;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134051816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134051835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9992;RSQ=0.9821;ERATE=0.0004;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134051976 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6501;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0007;THETA=0.0004;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 134051984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0071;AVGPOST=0.9988;RSQ=0.9207;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134052117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0203;AVGPOST=0.9979;RSQ=0.9631;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134052131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0063;AVGPOST=0.9975;RSQ=0.8437;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134052215 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5368;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134052424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9441;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134052454 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134052496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0192;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134052544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0072;AVGPOST=0.9968;RSQ=0.8605;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134052682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134052751 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134052759 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134052853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134052865 . G GA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5710;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134052974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0014;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134053157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9284;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134053161 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9185;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134053364 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6699;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134053388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134053415 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4790;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 134053535 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.9174;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134053536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4993;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 134053573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134053734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9108;ERATE=0.0004;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134053813 . G GA 211 PASS INDEL;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0138;AVGPOST=0.9900;RSQ=0.7038;ERATE=0.0014;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134053941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6500;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 134053974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134053981 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134054232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.899;LDAF=0.0456;AVGPOST=0.9897;RSQ=0.9068;ERATE=0.0006;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134054270 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0304;AVGPOST=0.9992;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134054302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9180;ERATE=0.0003;THETA=0.0037;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134054503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4981;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 134054553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4988;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0005;THETA=0.0007;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 134054617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7073;ERATE=0.0005;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134054683 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0145;AVGPOST=0.9956;RSQ=0.8937;ERATE=0.0005;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134054686 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0147;AVGPOST=0.9952;RSQ=0.8956;ERATE=0.0004;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134054688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0143;AVGPOST=0.9959;RSQ=0.9044;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134054689 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0155;AVGPOST=0.9949;RSQ=0.8920;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134054691 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4981;AVGPOST=0.9975;RSQ=0.9960;ERATE=0.0008;THETA=0.0009;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 134054701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0661;AVGPOST=0.9993;RSQ=0.9949;ERATE=0.0003;THETA=0.0003;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 134054710 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8972;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134054803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.827;LDAF=0.0194;AVGPOST=0.9917;RSQ=0.8334;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134054810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7739;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134054911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0145;AVGPOST=0.9987;RSQ=0.9618;ERATE=0.0004;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134055009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134055033 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0125;AVGPOST=0.9992;RSQ=0.9706;ERATE=0.0003;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134055048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4714;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134055063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4969;AVGPOST=0.9957;RSQ=0.9935;ERATE=0.0008;THETA=0.0007;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 134055065 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4625;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134055091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.931;LDAF=0.4935;AVGPOST=0.9892;RSQ=0.9841;ERATE=0.0005;THETA=0.0019;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 134055161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.956;LDAF=0.6429;AVGPOST=0.9872;RSQ=0.9814;ERATE=0.0008;THETA=0.0013;AC=1417;AN=2184 GT:DS:GL:BD 0.64880955 1 1 134055186 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.4934;AVGPOST=0.9898;RSQ=0.9859;ERATE=0.0011;THETA=0.0020;AC=1083;AN=2184 GT:DS:GL:BD 0.49587911 0 1 134055212 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8206;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134055224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4856;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0007;THETA=0.0006;AC=1063;AN=2184 GT:DS:GL:BD 0.48672161 0 1 134055358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5399;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134055359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6918;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134055379 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.960;LDAF=0.6440;AVGPOST=0.9909;RSQ=0.9863;ERATE=0.0009;THETA=0.0005;AC=1414;AN=2184 GT:DS:GL:BD 0.64743590 1 1 134055417 . G GT 201 PASS INDEL;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5237;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134055417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0212;AVGPOST=0.9971;RSQ=0.9402;ERATE=0.0006;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134055464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.927;LDAF=0.4928;AVGPOST=0.9904;RSQ=0.9857;ERATE=0.0007;THETA=0.0005;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 134055482 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6253;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134055569 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.4955;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0007;THETA=0.0006;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 134055715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7950;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134055726 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4765;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134055750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134055777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.4947;AVGPOST=0.9820;RSQ=0.9753;ERATE=0.0030;THETA=0.0041;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 134055845 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134055904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134056056 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134056060 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.975;LDAF=0.4940;AVGPOST=0.9869;RSQ=0.9820;ERATE=0.0020;THETA=0.0010;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 134056073 . TCTC T 3101 PASS INDEL;BAVGPOST=0.980;BRSQ=0.799;LDAF=0.0553;AVGPOST=0.9948;RSQ=0.9614;ERATE=0.0003;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134056097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.933;LDAF=0.4680;AVGPOST=0.9671;RSQ=0.9563;ERATE=0.0004;THETA=0.0006;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 134056131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.932;LDAF=0.4486;AVGPOST=0.9664;RSQ=0.9542;ERATE=0.0007;THETA=0.0015;AC=997;AN=2184 GT:DS:GL:BD 0.45650184 0 1 134056132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0260;AVGPOST=0.9985;RSQ=0.9759;ERATE=0.0003;THETA=0.0018;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134056209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7575;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134056235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0003;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134056261 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7077;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134056327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7576;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134056386 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5015;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134056402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.7406;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134056586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9747;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134056588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.4946;AVGPOST=0.9899;RSQ=0.9857;ERATE=0.0017;THETA=0.0005;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 134056606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.959;LDAF=0.4814;AVGPOST=0.9803;RSQ=0.9746;ERATE=0.0007;THETA=0.0005;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 134056686 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0052;AVGPOST=0.9975;RSQ=0.8365;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134056752 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5344;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134056875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0415;AVGPOST=0.9993;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134056901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0106;AVGPOST=0.9968;RSQ=0.8646;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134056931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9877;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134057113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7160;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134057196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0056;AVGPOST=0.9961;RSQ=0.7829;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134057289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5223;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.704;LDAF=0.0035;AVGPOST=0.9968;RSQ=0.6391;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134057413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0232;AVGPOST=0.9993;RSQ=0.9861;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134057522 . AG A 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4530;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8099;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134057775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2739;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 134057875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6136;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134057909 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134057933 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058061 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134058074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058124 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4631;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4991;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0058;AVGPOST=0.9988;RSQ=0.9098;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134058398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3372;AVGPOST=0.9994;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 134058436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0049;AVGPOST=0.9985;RSQ=0.8865;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134058480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134058519 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0262;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134058598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.937;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9891;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134058620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6709;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134058699 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0203;AVGPOST=0.9987;RSQ=0.9712;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134058737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8526;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134058770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134058931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7114;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134058964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134059039 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0451;AVGPOST=0.9968;RSQ=0.9688;ERATE=0.0003;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 134059083 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8671;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134059220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3375;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0004;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 134059274 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.999;LDAF=0.6640;AVGPOST=0.9962;RSQ=0.9933;ERATE=0.0004;THETA=0.0006;AC=1452;AN=2184 GT:DS:GL:BD 0.66483516 1 1 134059314 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134059471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9980;RSQ=0.9452;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134059491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134059532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134059539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.5967;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134059578 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134059598 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4222;AVGPOST=0.9990;RSQ=0.9986;ERATE=0.0004;THETA=0.0006;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 134059630 . CTT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7549;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134059713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134059782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7315;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134059852 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9625;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134059914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8929;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134060001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.966;LDAF=0.1184;AVGPOST=0.9949;RSQ=0.9815;ERATE=0.0004;THETA=0.0004;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 134060119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0420;AVGPOST=0.9989;RSQ=0.9889;ERATE=0.0003;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134060137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5826;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134060187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134060266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8889;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134060358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134060373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5878;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134060453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134060480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4228;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 134060485 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9650;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134060504 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3371;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 134060625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7203;ERATE=0.0007;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134060773 . GT G 6363 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0442;AVGPOST=0.9981;RSQ=0.9830;ERATE=0.0004;THETA=0.0005;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 134060804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134060815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9747;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134060825 . ACT A 580 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9649;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134060893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5266;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134060906 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134060935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9760;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134060996 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.890;LDAF=0.0207;AVGPOST=0.9943;RSQ=0.9024;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134061028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0418;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134061214 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134061242 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.3335;AVGPOST=0.9943;RSQ=0.9910;ERATE=0.0007;THETA=0.0002;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 134061302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9617;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134061308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.2715;AVGPOST=0.9957;RSQ=0.9916;ERATE=0.0003;THETA=0.0008;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 134061313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6777;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134061340 . G GT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7593;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134061391 . G GA 8403 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3312;AVGPOST=0.9911;RSQ=0.9862;ERATE=0.0005;THETA=0.0007;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 134061404 rs56850704 A AG 34897 PASS INDEL;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.3332;AVGPOST=0.9935;RSQ=0.9899;ERATE=0.0004;THETA=0.0004;AC=732;AN=2184 GT:DS:GL:BD 0.33516484 0 1 134061406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134061505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0063;AVGPOST=0.9990;RSQ=0.9302;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134061558 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134061587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0295;AVGPOST=0.9990;RSQ=0.9865;ERATE=0.0003;THETA=0.0008;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134061752 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134061759 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134061789 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9226;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134061797 . AAAG A 1103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9233;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134061797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134061879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1251;AVGPOST=0.9985;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134061904 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134061922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0160;AVGPOST=0.9969;RSQ=0.9246;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134061926 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134062065 . AAAT A 234 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7841;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134062107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134062115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134062239 . CAATT C 286 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0033;AVGPOST=0.9977;RSQ=0.6875;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134062284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7456;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134062316 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134062340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134062414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0681;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0003;THETA=0.0007;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134062466 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1076;AVGPOST=0.9983;RSQ=0.9927;ERATE=0.0006;THETA=0.0004;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 134062489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3559;AVGPOST=0.9945;RSQ=0.9905;ERATE=0.0009;THETA=0.0004;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 134062684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134062727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134062801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0046;AVGPOST=0.9954;RSQ=0.6533;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134062815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134062837 . T TG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4802;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134062875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134062884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.1149;AVGPOST=0.9968;RSQ=0.9880;ERATE=0.0006;THETA=0.0002;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 134062995 . C CT 53 PASS INDEL;BAVGPOST=0.997;BRSQ=0.781;LDAF=0.0082;AVGPOST=0.9959;RSQ=0.7982;ERATE=0.0008;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134063007 . G GT 47 PASS INDEL;BAVGPOST=0.952;BRSQ=0.460;LDAF=0.0503;AVGPOST=0.9400;RSQ=0.5328;ERATE=0.0063;THETA=0.0003;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134063011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.810;LDAF=0.2099;AVGPOST=0.9032;RSQ=0.7630;ERATE=0.0409;THETA=0.0002;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 134063012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.599;LDAF=0.0087;AVGPOST=0.9906;RSQ=0.5725;ERATE=0.0015;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134063049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1315;AVGPOST=0.9906;RSQ=0.9663;ERATE=0.0015;THETA=0.0006;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 134063115 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134063229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7601;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134063241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134063260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0045;AVGPOST=0.9951;RSQ=0.5827;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134063271 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2777;AVGPOST=0.9968;RSQ=0.9936;ERATE=0.0005;THETA=0.0004;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 134063327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0573;AVGPOST=0.9981;RSQ=0.9852;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134063333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6108;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134063486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0046;AVGPOST=0.9952;RSQ=0.6003;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134063502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4885;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134063649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5801;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134063799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9546;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134063879 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134063915 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9804;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134063920 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0175;AVGPOST=0.9985;RSQ=0.9667;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134063937 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7129;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134064019 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134064059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0696;AVGPOST=0.9984;RSQ=0.9901;ERATE=0.0004;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 134064097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0100;AVGPOST=0.9983;RSQ=0.9236;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134064397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1111;AVGPOST=0.9982;RSQ=0.9924;ERATE=0.0004;THETA=0.0003;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 134064648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8410;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134064772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.6861;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=1497;AN=2184 GT:DS:GL:BD 0.68543959 1 1 134064816 . A AT 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7136;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134064864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134064884 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9224;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134064936 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134064991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3394;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=740;AN=2184 GT:DS:GL:BD 0.33882785 0 1 134065039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.9615;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 134065075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9576;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134065104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0943;AVGPOST=0.9992;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 134065110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6510;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5746;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134065165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8703;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134065205 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1256;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134065287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0083;AVGPOST=0.9984;RSQ=0.9239;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134065309 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8344;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134065367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1289;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 134065388 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9586;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134065398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6535;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134065441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134065478 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134065508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065521 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134065537 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134065543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134065812 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0058;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134065835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6299;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134065879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1175;AVGPOST=0.9967;RSQ=0.9880;ERATE=0.0009;THETA=0.0004;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 134065892 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0754;AVGPOST=0.9977;RSQ=0.9883;ERATE=0.0004;THETA=0.0005;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 134065901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9317;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134066035 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134066114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0128;AVGPOST=0.9975;RSQ=0.9347;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134066138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4708;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134066176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8045;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134066285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134066292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9599;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134066436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.5418;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134066452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134066735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7400;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067434 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134067536 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134067622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.1602;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134067647 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134067908 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2113;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 134067993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134068098 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0195;AVGPOST=0.9991;RSQ=0.9823;ERATE=0.0003;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134068204 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6201;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134068335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134068465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9411;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134068585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0993;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 134068718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134068720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0921;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 134068722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9035;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134068841 rs34922488 CT C 23469 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2111;AVGPOST=0.9970;RSQ=0.9924;ERATE=0.0006;THETA=0.0003;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 134068853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0151;AVGPOST=0.9979;RSQ=0.9520;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134068872 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9442;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134068907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4125;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134068932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2114;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 134068959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134068989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9684;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134069051 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7089;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134069061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9987;RSQ=0.9665;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134069065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134069159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3183;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0007;THETA=0.0002;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 134069196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0113;AVGPOST=0.9995;RSQ=0.9775;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134069238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9479;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134069282 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6200;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134069504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134069528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0089;AVGPOST=0.9991;RSQ=0.9538;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134069663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8214;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134069667 . TG T 85 PASS INDEL;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134069730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9555;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134069734 . GCCAGCTTGTAATT G 1181 PASS INDEL;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0082;AVGPOST=0.9985;RSQ=0.9361;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134069734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0920;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 134069737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2111;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 134069909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1988;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 134069971 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134070086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0514;AVGPOST=0.9972;RSQ=0.9770;ERATE=0.0003;THETA=0.0005;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134070094 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2110;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 134070205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9993;RSQ=0.9793;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134070303 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1887;AVGPOST=0.9986;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 134070382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8286;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134070395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.876;LDAF=0.9827;AVGPOST=0.9978;RSQ=0.9453;ERATE=0.0003;THETA=0.0005;AC=2147;AN=2184 GT:DS:GL:BD 0.98305863 1 1 134070406 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5170;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0003;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 134070408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8887;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134070511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134070699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6524;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134070713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134070837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8625;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134070889 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134070972 . TTTTG T 10335 PASS INDEL;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0976;AVGPOST=0.9911;RSQ=0.9620;ERATE=0.0029;THETA=0.0002;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134071082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134071102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0121;AVGPOST=0.9972;RSQ=0.9277;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134071247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9691;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134071388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7827;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134071390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0055;AVGPOST=0.9985;RSQ=0.8924;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134071399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134071403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9855;ERATE=0.0003;THETA=0.0001;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134071411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134071418 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1990;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 134071463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134071593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9501;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134071723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7413;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134071743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0072;AVGPOST=0.9990;RSQ=0.9502;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134071828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134071869 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134071978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.0864;AVGPOST=0.9981;RSQ=0.9907;ERATE=0.0004;THETA=0.0005;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 134072002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134072124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.8992;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134072125 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0270;AVGPOST=0.9979;RSQ=0.9659;ERATE=0.0004;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134072163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7599;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134072245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0537;AVGPOST=0.9980;RSQ=0.9824;ERATE=0.0005;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134072424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0546;AVGPOST=0.9976;RSQ=0.9818;ERATE=0.0003;THETA=0.0002;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 134072436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.3530;AVGPOST=0.9919;RSQ=0.9861;ERATE=0.0010;THETA=0.0004;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 134072626 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5346;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134072712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134072727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134072749 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1269;AVGPOST=0.9976;RSQ=0.9914;ERATE=0.0007;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134072780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4870;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134072855 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8307;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134073073 . GA G 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5565;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134073098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9408;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134073125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0141;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134073134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0087;AVGPOST=0.9982;RSQ=0.9147;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134073159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7343;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134073197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3561;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 134073267 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8425;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134073333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134073334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0267;AVGPOST=0.9984;RSQ=0.9761;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134073385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134073513 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6805;ERATE=0.0013;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134073535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134073555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9356;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134073615 . C CAAGG 184 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.6963;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134073697 rs79859614 TG T 36660 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3550;AVGPOST=0.9937;RSQ=0.9889;ERATE=0.0012;THETA=0.0002;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 134073736 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7311;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134073836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0108;AVGPOST=0.9983;RSQ=0.9379;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134073858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7690;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134073964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0322;AVGPOST=0.9973;RSQ=0.9666;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134074033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8256;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134074048 rs66563564 TA T 22341 PASS INDEL;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3440;AVGPOST=0.9958;RSQ=0.9921;ERATE=0.0008;THETA=0.0003;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 134074118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6131;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9832;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134074228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134074280 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134074285 . CT C 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7765;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134074449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0091;AVGPOST=0.9997;RSQ=0.9846;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134074502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0830;AVGPOST=0.9958;RSQ=0.9777;ERATE=0.0004;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134074567 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0692;AVGPOST=0.9959;RSQ=0.9777;ERATE=0.0004;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134074615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.481;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4689;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074799 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5257;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074841 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7846;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134074898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134074908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7359;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074926 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134074944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0060;AVGPOST=0.9985;RSQ=0.9111;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134074966 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134074976 MERGED_DEL_2_4165 C ADELA . . SV;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5911;ERATE=0.0004;THETA=0.0004;CIEND=-36;117;CIPOS=-62;95;END=82870624;SOURCE=BreakDancer_82866278_82870659;GenomeStrip_82866247 GT:DS:GL:BD 0.00045788 0 1 134075043 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134075174 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9986;RSQ=0.9888;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134075293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8267;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134075311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134075325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9993;RSQ=0.9760;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134075355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134075416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.6840;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134075445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1153;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 134075524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134075613 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134075698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0535;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134075753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0093;AVGPOST=0.9994;RSQ=0.9715;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134075804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8750;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134075809 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6473;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134075833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3989;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134075834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134075835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134075847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0140;AVGPOST=0.9991;RSQ=0.9765;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134076024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134076147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9165;ERATE=0.0004;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134076348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134076422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134076500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9708;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134076515 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8672;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134076650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0157;AVGPOST=0.9964;RSQ=0.9233;ERATE=0.0005;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134076670 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7845;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134076675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3903;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134076691 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134076757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134076817 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6063;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134076823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.964;LDAF=0.3900;AVGPOST=0.9761;RSQ=0.9629;ERATE=0.0070;THETA=0.0003;AC=861;AN=2184 GT:DS:GL:BD 0.39423078 0 1 134076830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134076852 . TAC T 251 PASS INDEL;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0056;AVGPOST=0.9952;RSQ=0.6607;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134076863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8299;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134076949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7636;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134077054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4251;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134077059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134077116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5055;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134077120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.8981;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134077561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3956;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134077806 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6770;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134077894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.850;LDAF=0.0146;AVGPOST=0.9965;RSQ=0.9005;ERATE=0.0006;THETA=0.0050;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134077958 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0096;AVGPOST=0.9970;RSQ=0.8770;ERATE=0.0003;THETA=0.0016;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134078045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0195;AVGPOST=0.9955;RSQ=0.9158;ERATE=0.0007;THETA=0.0002;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134078073 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134078077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6619;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134078109 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9114;ERATE=0.0004;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134078165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.915;LDAF=0.6567;AVGPOST=0.9500;RSQ=0.9263;ERATE=0.0029;THETA=0.0009;AC=1454;AN=2184 GT:DS:GL:BD 0.66575092 1 1 134078438 . AC A 2317 PASS INDEL;BAVGPOST=0.994;BRSQ=0.865;LDAF=0.0170;AVGPOST=0.9968;RSQ=0.9368;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134078509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8003;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134078554 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0077;AVGPOST=0.9968;RSQ=0.8194;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134078572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6790;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134078592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.803;LDAF=0.0228;AVGPOST=0.9810;RSQ=0.6650;ERATE=0.0140;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134078662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0930;AVGPOST=0.9893;RSQ=0.9571;ERATE=0.0006;THETA=0.0008;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 134078914 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4066;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134078955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.6730;AVGPOST=0.9781;RSQ=0.9655;ERATE=0.0005;THETA=0.0007;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 134079086 . GACA G 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7582;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134079094 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0057;AVGPOST=0.9978;RSQ=0.8247;ERATE=0.0007;THETA=0.0017;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134079346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8379;ERATE=0.0003;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134079389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8467;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134079422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0185;AVGPOST=0.9968;RSQ=0.9301;ERATE=0.0004;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134079449 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0063;AVGPOST=0.9986;RSQ=0.8953;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134079458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8809;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134079487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0084;AVGPOST=0.9939;RSQ=0.7266;ERATE=0.0007;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134079584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0070;AVGPOST=0.9954;RSQ=0.7662;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134079735 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9145;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134079752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0918;AVGPOST=0.9955;RSQ=0.9811;ERATE=0.0003;THETA=0.0063;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 134079904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.688;LDAF=0.0188;AVGPOST=0.9801;RSQ=0.6039;ERATE=0.0078;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134079985 rs71292926 CT C 75 PASS INDEL;BAVGPOST=0.985;BRSQ=0.453;LDAF=0.0207;AVGPOST=0.9728;RSQ=0.5003;ERATE=0.0056;THETA=0.0017;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134079986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.880;LDAF=0.0156;AVGPOST=0.9947;RSQ=0.8680;ERATE=0.0003;THETA=0.0013;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134080000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5694;ERATE=0.0005;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134080038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8917;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134080072 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6134;ERATE=0.0005;THETA=0.0078;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134080207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7668;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134080389 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7101;ERATE=0.0004;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134080427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6733;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134080464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1211;AVGPOST=0.9890;RSQ=0.9607;ERATE=0.0010;THETA=0.0012;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 134080508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7903;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134080539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6859;ERATE=0.0008;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134080631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134080701 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9725;ERATE=0.0003;THETA=0.0053;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134080765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0119;AVGPOST=0.9977;RSQ=0.9144;ERATE=0.0005;THETA=0.0048;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134080778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8771;ERATE=0.0004;THETA=0.0064;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134080806 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.3966;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134080865 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0026;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134080985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6720;ERATE=0.0008;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134081231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134081400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134081407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0145;AVGPOST=0.9980;RSQ=0.9442;ERATE=0.0003;THETA=0.0028;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134081442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5490;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134081468 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0088;AVGPOST=0.9984;RSQ=0.9271;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134081700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134081732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6589;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134081866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0034;AVGPOST=0.9967;RSQ=0.6442;ERATE=0.0004;THETA=0.0047;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134081870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.916;LDAF=0.2961;AVGPOST=0.9607;RSQ=0.9307;ERATE=0.0045;THETA=0.0048;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 134081871 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.887;LDAF=0.0067;AVGPOST=0.9974;RSQ=0.8573;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134081884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.8068;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134081951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.783;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.9042;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134082307 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134082387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6008;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134082394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3026;AVGPOST=0.9848;RSQ=0.9724;ERATE=0.0013;THETA=0.0011;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 134082440 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.613;LDAF=0.0158;AVGPOST=0.9846;RSQ=0.6278;ERATE=0.0066;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134082602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134082639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134082886 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1937;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0008;THETA=0.0018;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 134083018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134083142 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0900;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0060;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 134083199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.898;LDAF=0.5920;AVGPOST=0.9365;RSQ=0.9119;ERATE=0.0330;THETA=0.0106;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 134083640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8419;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134083684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134083798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0005;THETA=0.0091;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134083931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8643;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134083967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0106;AVGPOST=0.9959;RSQ=0.8514;ERATE=0.0004;THETA=0.0039;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134084010 . C CA 809 PASS INDEL;BAVGPOST=0.668;BRSQ=0.163;LDAF=0.3061;AVGPOST=0.6484;RSQ=0.2799;ERATE=0.0498;THETA=0.0004;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 134084080 . AG A 5803 PASS INDEL;BAVGPOST=0.994;BRSQ=0.959;LDAF=0.0482;AVGPOST=0.9959;RSQ=0.9697;ERATE=0.0005;THETA=0.0004;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 134084181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134084205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7689;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134084243 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8192;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134084536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1786;AVGPOST=0.9960;RSQ=0.9905;ERATE=0.0006;THETA=0.0012;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 134084577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7331;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134084671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.4399;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134084702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.514;LDAF=0.0056;AVGPOST=0.9962;RSQ=0.7206;ERATE=0.0006;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134084747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.726;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6904;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134084767 . TTAA T 360 PASS INDEL;BAVGPOST=0.988;BRSQ=0.907;LDAF=0.0511;AVGPOST=0.9973;RSQ=0.9787;ERATE=0.0004;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134084841 . TAATA T 2791 PASS INDEL;BAVGPOST=0.988;BRSQ=0.909;LDAF=0.0513;AVGPOST=0.9976;RSQ=0.9799;ERATE=0.0004;THETA=0.0006;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134084842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.7036;ERATE=0.0004;THETA=0.0048;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134084922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1651;AVGPOST=0.9978;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 134084927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4212;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134084974 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0164;AVGPOST=0.9990;RSQ=0.9722;ERATE=0.0005;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134085076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.754;LDAF=0.0274;AVGPOST=0.9867;RSQ=0.8120;ERATE=0.0005;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134085122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1472;AVGPOST=0.9931;RSQ=0.9790;ERATE=0.0008;THETA=0.0011;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 134085164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9623;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134085234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134085308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134085371 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0145;AVGPOST=0.9980;RSQ=0.9477;ERATE=0.0004;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134085384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8888;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134085552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134085726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7162;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134085773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4236;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0006;THETA=0.0007;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 134085792 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0081;AVGPOST=0.9959;RSQ=0.7893;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134085796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9997;RSQ=0.9923;ERATE=0.0003;THETA=0.0013;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134085841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134085955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134085957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5156;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134086003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5827;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134086004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.934;LDAF=0.0439;AVGPOST=0.9925;RSQ=0.9282;ERATE=0.0004;THETA=0.0002;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134086057 rs72068929 CTA C 1603 PASS INDEL;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0247;AVGPOST=0.9904;RSQ=0.8543;ERATE=0.0010;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134086212 . CATT C 8128 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0623;AVGPOST=0.9950;RSQ=0.9703;ERATE=0.0009;THETA=0.0005;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134086295 . ATAT A 53 PASS INDEL;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6158;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134086338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.721;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9235;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134086378 rs111247858 GAAAT G 7518 PASS INDEL;BAVGPOST=0.993;BRSQ=0.941;LDAF=0.0614;AVGPOST=0.9976;RSQ=0.9844;ERATE=0.0004;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134086493 . CA C 1755 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0177;AVGPOST=0.9980;RSQ=0.9519;ERATE=0.0005;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134086565 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0502;AVGPOST=0.9979;RSQ=0.9847;ERATE=0.0005;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134086586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0179;AVGPOST=0.9979;RSQ=0.9499;ERATE=0.0006;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134086893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8487;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134086982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4902;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134087195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5251;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134087230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4851;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134087392 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.377;LDAF=0.0045;AVGPOST=0.9947;RSQ=0.5510;ERATE=0.0013;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134087401 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3300;AVGPOST=0.9972;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 134087402 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8294;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134087406 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6749;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134087573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9992;RSQ=0.9482;ERATE=0.0003;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134087780 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0078;AVGPOST=0.9985;RSQ=0.9229;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134087874 . T TA 573 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8890;ERATE=0.0017;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134087897 . CAG C 417 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8927;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134088053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6337;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134088094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2193;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0002;THETA=0.0004;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 134088137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9402;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134088138 . TA T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5943;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134088139 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7611;ERATE=0.0015;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134088156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8075;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134088163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8569;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134088228 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134088507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134088617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134088635 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0262;AVGPOST=0.9997;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134088755 . GA G 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6561;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134088843 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134088932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7819;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134088940 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134089033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7064;ERATE=0.0020;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134089114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.5145;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134089138 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134089200 . A AG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134089218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134089307 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4702;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134089626 . TA T 1104 PASS INDEL;BAVGPOST=0.967;BRSQ=0.652;LDAF=0.0761;AVGPOST=0.9298;RSQ=0.6250;ERATE=0.0109;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134089721 . T TA 2829 PASS INDEL;BAVGPOST=0.924;BRSQ=0.577;LDAF=0.1553;AVGPOST=0.8423;RSQ=0.5163;ERATE=0.0301;THETA=0.0003;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 134089725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0154;AVGPOST=0.9896;RSQ=0.7513;ERATE=0.0008;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134089740 . T TAAC 477 PASS INDEL;BAVGPOST=0.996;BRSQ=0.811;LDAF=0.0179;AVGPOST=0.9904;RSQ=0.8234;ERATE=0.0007;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134089740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.2961;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134089814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134089818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0056;AVGPOST=0.9982;RSQ=0.8701;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134089849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5348;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134089855 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9858;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134090114 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0340;AVGPOST=0.9976;RSQ=0.9731;ERATE=0.0004;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134090155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134090274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134090285 . AAAG A 484 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134090335 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0067;AVGPOST=0.9980;RSQ=0.8781;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134090342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7511;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134090491 . AAAAC A 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8711;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134090546 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7927;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134090566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8297;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134090606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134090713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134090757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4555;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134090928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4314;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134091001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134091059 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.8947;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134091096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9207;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134091136 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0270;AVGPOST=0.9995;RSQ=0.9922;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134091161 . AT A 9384 PASS INDEL;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1298;AVGPOST=0.9829;RSQ=0.9455;ERATE=0.0012;THETA=0.0003;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134091177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1217;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0004;THETA=0.0003;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 134091238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.9112;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134091272 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1815;AVGPOST=0.9979;RSQ=0.9947;ERATE=0.0002;THETA=0.0004;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 134091410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1219;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 134091478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0271;AVGPOST=0.9989;RSQ=0.9835;ERATE=0.0004;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134091494 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4201;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134091516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6711;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134091577 . C CA 358 PASS INDEL;BAVGPOST=0.988;BRSQ=0.625;LDAF=0.0267;AVGPOST=0.9681;RSQ=0.5436;ERATE=0.0033;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134091661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9606;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134091772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6668;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134091785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134091799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134092048 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4912;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134092094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0041;AVGPOST=0.9965;RSQ=0.7048;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134092162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9553;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134092249 . AC A 972 PASS INDEL;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0064;AVGPOST=0.9985;RSQ=0.8985;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134092259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134092274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9719;ERATE=0.0002;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134092326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9333;ERATE=0.0002;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134092500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134092609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134092656 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134092701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0393;AVGPOST=0.9989;RSQ=0.9888;ERATE=0.0003;THETA=0.0011;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 134092903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1191;AVGPOST=0.9984;RSQ=0.9938;ERATE=0.0005;THETA=0.0015;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 134092913 . TTTAAC T 473 PASS INDEL;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.6782;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134092917 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0587;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 134093026 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9376;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134093131 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7729;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134093516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6144;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134093635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6849;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134093760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0315;AVGPOST=0.9973;RSQ=0.9655;ERATE=0.0004;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134093764 . AGTT A 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6369;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134093770 . GATTA G 237 PASS INDEL;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4321;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134093793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.628;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7351;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134093794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4102;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0007;THETA=0.0003;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 134093816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0100;AVGPOST=0.9983;RSQ=0.9310;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134094040 . AT A 162 PASS INDEL;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0059;AVGPOST=0.9952;RSQ=0.6696;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134094043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5038;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134094329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1727;AVGPOST=0.9977;RSQ=0.9934;ERATE=0.0007;THETA=0.0006;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 134094374 rs67680160 C CA 28729 PASS INDEL;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.4090;AVGPOST=0.9952;RSQ=0.9916;ERATE=0.0007;THETA=0.0004;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 134094429 . A ACAT 287 PASS INDEL;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6632;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134094558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5781;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134094600 rs55654197 T TAGAG 73638 PASS INDEL;BAVGPOST=0.984;BRSQ=0.970;LDAF=0.4702;AVGPOST=0.9612;RSQ=0.9415;ERATE=0.0091;THETA=0.0004;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 134094645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0289;AVGPOST=0.9985;RSQ=0.9785;ERATE=0.0005;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134094667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7954;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134094680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5234;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134094793 rs67533025 T TA 33129 PASS INDEL;BAVGPOST=0.984;BRSQ=0.970;LDAF=0.4063;AVGPOST=0.9866;RSQ=0.9774;ERATE=0.0017;THETA=0.0008;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 134095105 . T TA 10 PASS INDEL;BAVGPOST=0.997;BRSQ=0.475;LDAF=0.0043;AVGPOST=0.9962;RSQ=0.6210;ERATE=0.0010;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134095146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7330;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134095314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0593;AVGPOST=0.9984;RSQ=0.9899;ERATE=0.0004;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 134095378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134095441 . G GA 67 PASS INDEL;BAVGPOST=0.986;BRSQ=0.552;LDAF=0.0287;AVGPOST=0.9634;RSQ=0.4988;ERATE=0.0081;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134095482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0020;AVGPOST=0.9972;RSQ=0.4847;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134095518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4588;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134095519 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0053;AVGPOST=0.9971;RSQ=0.7833;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134095572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5657;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134095777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134095819 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134095848 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9989;RSQ=0.9919;ERATE=0.0004;THETA=0.0036;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134095928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7661;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134095944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7938;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134096010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134096105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8717;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134096201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9220;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134096344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0591;AVGPOST=0.9991;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 134096356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0173;AVGPOST=0.9978;RSQ=0.9441;ERATE=0.0005;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134096485 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0039;AVGPOST=0.9959;RSQ=0.5966;ERATE=0.0013;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134096603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0181;AVGPOST=0.9976;RSQ=0.9464;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134096605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9088;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134096631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1180;AVGPOST=0.9989;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 134096632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6004;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134096645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5205;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134096677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8148;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134096693 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1733;AVGPOST=0.9983;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 134096853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4209;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134096879 rs111830112 AC A 4893 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134096900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1181;AVGPOST=0.9973;RSQ=0.9897;ERATE=0.0004;THETA=0.0003;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 134097003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8631;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134097017 . AG A 658 PASS INDEL;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0065;AVGPOST=0.9979;RSQ=0.8596;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134097073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.4773;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134097135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.949;LDAF=0.4454;AVGPOST=0.9821;RSQ=0.9739;ERATE=0.0009;THETA=0.0005;AC=984;AN=2184 GT:DS:GL:BD 0.45054945 0 1 134097167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.867;LDAF=0.0149;AVGPOST=0.9930;RSQ=0.8138;ERATE=0.0006;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134097425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134097448 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134097519 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134097569 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5077;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134097643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.7129;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134097659 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0585;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0009;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 134097689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6047;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134097730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7899;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134097856 . G GT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134097865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0631;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134097902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0630;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134097962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134097964 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134098042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6068;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134098093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0339;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134098104 . T TA 69 PASS INDEL;BAVGPOST=0.998;BRSQ=0.642;LDAF=0.0052;AVGPOST=0.9945;RSQ=0.5964;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134098155 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6805;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134098299 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0633;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134098300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5272;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134098347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8189;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134098365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0634;AVGPOST=0.9986;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 134098370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0629;AVGPOST=0.9979;RSQ=0.9870;ERATE=0.0004;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134098371 . GA G 520 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0087;AVGPOST=0.9937;RSQ=0.7262;ERATE=0.0007;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134098385 rs60722941 AT A 189 PASS INDEL;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.8976;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134098409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134098568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134098611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0340;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134098683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7609;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134098782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3695;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 134098814 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134098816 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0303;AVGPOST=0.9965;RSQ=0.9573;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134098853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3697;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 134098887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9209;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134098952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8190;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134099089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0244;AVGPOST=0.9985;RSQ=0.9776;ERATE=0.0003;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134099272 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0443;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 134099289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4774;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134099290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3681;AVGPOST=0.9964;RSQ=0.9950;ERATE=0.0009;THETA=0.0002;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 134099292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134099336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134099350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3699;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 134099518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7714;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134099575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0443;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 134099583 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134099624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0031;AVGPOST=0.9978;RSQ=0.7285;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134099648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134099674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134099746 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0411;AVGPOST=0.9982;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134099780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3692;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 134099786 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134099814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8598;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134099879 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6733;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134099918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.8224;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134099982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0053;AVGPOST=0.9975;RSQ=0.8145;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134100040 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7691;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134100075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7866;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134100093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5837;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134100128 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3686;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0006;THETA=0.0002;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 134100148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2850;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0004;THETA=0.0001;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 134100208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.744;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4719;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134100234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2719;AVGPOST=0.9969;RSQ=0.9936;ERATE=0.0005;THETA=0.0002;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 134100282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3278;AVGPOST=0.9973;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 134100377 rs34519826 AG A 5057 PASS INDEL;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0402;AVGPOST=0.9977;RSQ=0.9744;ERATE=0.0005;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134100428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5825;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134100645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100699 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3297;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 134100738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3300;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 134100820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7897;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134100850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134100858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0455;AVGPOST=0.9987;RSQ=0.9886;ERATE=0.0004;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 134100872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0306;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134100890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.999;LDAF=0.3696;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0003;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 134101071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.6137;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134101110 . AAAG A 131 PASS INDEL;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6819;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134101145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0007;AVGPOST=0.9987;RSQ=0.2248;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134101180 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134101428 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2856;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0005;THETA=0.0006;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 134101503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8033;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134101514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0398;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134101626 . TG T 5631 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0448;AVGPOST=0.9988;RSQ=0.9876;ERATE=0.0004;THETA=0.0003;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 134101735 . CCTT C 172 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6070;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134101802 . CT C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134101834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134101876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8592;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134101903 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0112;AVGPOST=0.9977;RSQ=0.9262;ERATE=0.0005;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134101961 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134101967 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134102041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5592;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134102180 . C CCT 13859 PASS INDEL;BAVGPOST=0.975;BRSQ=0.956;LDAF=0.3529;AVGPOST=0.9709;RSQ=0.9588;ERATE=0.0036;THETA=0.0006;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 134102211 rs35425136 T TCA 59662 PASS INDEL;BAVGPOST=0.980;BRSQ=0.968;LDAF=0.3618;AVGPOST=0.9841;RSQ=0.9780;ERATE=0.0006;THETA=0.0003;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 134102213 . A ACC 14457 PASS INDEL;BAVGPOST=0.974;BRSQ=0.952;LDAF=0.3526;AVGPOST=0.9802;RSQ=0.9713;ERATE=0.0004;THETA=0.0002;AC=773;AN=2184 GT:DS:GL:BD 0.35393772 0 1 134102215 . A ACG 23384 PASS INDEL;BAVGPOST=0.970;BRSQ=0.946;LDAF=0.3496;AVGPOST=0.9668;RSQ=0.9508;ERATE=0.0035;THETA=0.0003;AC=772;AN=2184 GT:DS:GL:BD 0.35347986 0 1 134102217 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8034;ERATE=0.0008;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134102256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134102262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6349;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102291 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8336;AVGPOST=0.9989;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1822;AN=2184 GT:DS:GL:BD 0.83424908 1 1 134102312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102347 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7931;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102524 . TC T 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6873;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134102686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9076;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134102772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134102835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.850;LDAF=0.0217;AVGPOST=0.9946;RSQ=0.9061;ERATE=0.0006;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134102909 . G GC 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7766;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134102999 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.865;LDAF=0.0208;AVGPOST=0.9936;RSQ=0.8896;ERATE=0.0005;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134103016 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134103102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134103109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0608;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0007;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134103145 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0193;AVGPOST=0.9984;RSQ=0.9647;ERATE=0.0004;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134103203 . C CTTTT 250 PASS INDEL;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6885;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134103228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9489;ERATE=0.0005;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134103229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134103263 . C CA 77 PASS INDEL;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.5669;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134103388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0437;AVGPOST=0.9994;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134103394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9176;ERATE=0.0004;THETA=0.0045;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134103408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8699;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134103437 . CTG C 2682 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9994;RSQ=0.9783;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134103488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9806;ERATE=0.0003;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134103521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.956;LDAF=0.0437;AVGPOST=0.9931;RSQ=0.9428;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134103569 . T TA 188 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134103598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0002;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134103622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7698;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134103648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4527;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134103697 . A AT 112 PASS INDEL;BAVGPOST=0.996;BRSQ=0.620;LDAF=0.0101;AVGPOST=0.9875;RSQ=0.5122;ERATE=0.0034;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134103717 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7562;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134103779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9773;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134103893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0609;AVGPOST=0.9996;RSQ=0.9968;ERATE=0.0004;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134103960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8279;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134104078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134104093 . GT G 961 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9726;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134104118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5646;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134104160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5193;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134104355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7440;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134104379 . A AT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5513;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134104393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6053;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134104409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0095;AVGPOST=0.9931;RSQ=0.7618;ERATE=0.0004;THETA=0.0045;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134104412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.722;LDAF=0.0186;AVGPOST=0.9878;RSQ=0.7417;ERATE=0.0004;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134104425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0621;AVGPOST=0.9973;RSQ=0.9809;ERATE=0.0009;THETA=0.0007;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 134104457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0200;AVGPOST=0.9970;RSQ=0.9396;ERATE=0.0007;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134104468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0079;AVGPOST=0.9894;RSQ=0.4921;ERATE=0.0006;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134104501 rs61540217 C CA 970 PASS INDEL;BAVGPOST=0.744;BRSQ=0.316;LDAF=0.3246;AVGPOST=0.6714;RSQ=0.3410;ERATE=0.0503;THETA=0.0005;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 134104688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.921;LDAF=0.0495;AVGPOST=0.9834;RSQ=0.8779;ERATE=0.0019;THETA=0.0009;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 134104746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.870;LDAF=0.0403;AVGPOST=0.9853;RSQ=0.8468;ERATE=0.0006;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134104942 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1591;AVGPOST=0.9963;RSQ=0.9902;ERATE=0.0005;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 134104978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134105092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134105190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.696;LDAF=0.0167;AVGPOST=0.9902;RSQ=0.7663;ERATE=0.0006;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134105252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.909;LDAF=0.0134;AVGPOST=0.9952;RSQ=0.8588;ERATE=0.0005;THETA=0.0014;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134105253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.952;LDAF=0.6927;AVGPOST=0.9420;RSQ=0.9026;ERATE=0.0083;THETA=0.0004;AC=1531;AN=2184 GT:DS:GL:BD 0.70100731 1 1 134105270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0693;AVGPOST=0.9980;RSQ=0.9870;ERATE=0.0005;THETA=0.0006;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 134105315 . TTTTC T 2716 PASS INDEL;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0173;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0002;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134105447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4757;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134105533 . CT C 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134105548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6878;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134105718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9223;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134105748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4900;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134105841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7161;AVGPOST=0.9959;RSQ=0.9919;ERATE=0.0005;THETA=0.0007;AC=1565;AN=2184 GT:DS:GL:BD 0.71657509 1 1 134105852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9063;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134106110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134106160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134106221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0685;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0003;THETA=0.0002;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 134106227 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9430;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134106312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0330;AVGPOST=0.9980;RSQ=0.9795;ERATE=0.0003;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134106403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0520;AVGPOST=0.9990;RSQ=0.9926;ERATE=0.0002;THETA=0.0008;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134106638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9996;RSQ=0.9916;ERATE=0.0002;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134106652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7455;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134106702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9574;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134106773 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8954;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134106798 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7588;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134106891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0524;AVGPOST=0.9995;RSQ=0.9957;ERATE=0.0002;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134107026 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0002;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134107040 . A AG 319 PASS INDEL;BAVGPOST=0.998;BRSQ=0.602;LDAF=0.0036;AVGPOST=0.9953;RSQ=0.5758;ERATE=0.0004;THETA=0.0044;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134107081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134107098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0090;AVGPOST=0.9992;RSQ=0.9599;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134107104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0053;AVGPOST=0.9992;RSQ=0.9287;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134107196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0608;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134107234 . TC T 186 PASS INDEL;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4566;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134107242 . T TC 1425 PASS INDEL;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0598;AVGPOST=0.9984;RSQ=0.9899;ERATE=0.0005;THETA=0.0004;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 134107298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9964;RSQ=0.4360;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134107320 . AG A 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5518;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134107320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0049;AVGPOST=0.9921;RSQ=0.4010;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134107364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0053;AVGPOST=0.9961;RSQ=0.7131;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134107430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.624;LDAF=0.0188;AVGPOST=0.9809;RSQ=0.5834;ERATE=0.0058;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134107440 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0530;AVGPOST=0.9980;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134107487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1116;AVGPOST=0.9982;RSQ=0.9929;ERATE=0.0005;THETA=0.0008;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 134107584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.1115;AVGPOST=0.9976;RSQ=0.9906;ERATE=0.0005;THETA=0.0002;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 134107591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0108;AVGPOST=0.9973;RSQ=0.8906;ERATE=0.0005;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134107596 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7042;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134107741 . A AT 12 PASS INDEL;BAVGPOST=0.994;BRSQ=0.351;LDAF=0.0085;AVGPOST=0.9876;RSQ=0.4361;ERATE=0.0025;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134107797 rs71584928 G GT 50453 PASS INDEL;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.5015;AVGPOST=0.9814;RSQ=0.9716;ERATE=0.0017;THETA=0.0004;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 134107798 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8668;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134107844 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134107949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108054 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9818;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134108058 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108175 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6839;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134108291 . CATT C 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5323;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134108299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134108306 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134108312 . T TTG 408 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7807;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134108411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5757;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9761;AVGPOST=0.9990;RSQ=0.9859;ERATE=0.0003;THETA=0.0013;AC=2132;AN=2184 GT:DS:GL:BD 0.97619045 1 1 134108561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9283;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=2027;AN=2184 GT:DS:GL:BD 0.92811358 1 1 134108578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134108624 . C CT 278 PASS INDEL;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7577;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134108661 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9649;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134108723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.9105;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134108729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9681;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=2114;AN=2184 GT:DS:GL:BD 0.96794873 1 1 134108764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0117;AVGPOST=0.9984;RSQ=0.9390;ERATE=0.0003;THETA=0.0015;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134108892 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134108995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134109018 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8204;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134109318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0079;AVGPOST=0.9972;RSQ=0.8691;ERATE=0.0005;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134109326 . C CAA 7385 PASS INDEL;BAVGPOST=0.966;BRSQ=0.894;LDAF=0.2061;AVGPOST=0.9489;RSQ=0.8696;ERATE=0.0124;THETA=0.0005;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 134109348 . A AC 1038 PASS INDEL;BAVGPOST=0.946;BRSQ=0.813;LDAF=0.1654;AVGPOST=0.9315;RSQ=0.8016;ERATE=0.0057;THETA=0.0035;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134109349 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.958;LDAF=0.1512;AVGPOST=0.9802;RSQ=0.9496;ERATE=0.0006;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 134109412 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8240;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134109451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134109452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134109579 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5781;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134109633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.0936;AVGPOST=0.9939;RSQ=0.9763;ERATE=0.0005;THETA=0.0011;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 134109677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1342;AVGPOST=0.9948;RSQ=0.9839;ERATE=0.0003;THETA=0.0036;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 134109678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.991;LDAF=0.6664;AVGPOST=0.9903;RSQ=0.9860;ERATE=0.0009;THETA=0.0051;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 134109763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0083;AVGPOST=0.9991;RSQ=0.9550;ERATE=0.0004;THETA=0.0179;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134109787 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0269;AVGPOST=0.9970;RSQ=0.9615;ERATE=0.0003;THETA=0.0135;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134109798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0095;AVGPOST=0.9989;RSQ=0.9503;ERATE=0.0004;THETA=0.0034;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134110041 . T TG 22 PASS INDEL;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6058;ERATE=0.0008;THETA=0.0203;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134110056 . G GGT 2717 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0105;AVGPOST=0.9977;RSQ=0.9208;ERATE=0.0006;THETA=0.0137;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134110247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0038;AVGPOST=0.9972;RSQ=0.7200;ERATE=0.0012;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134110323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9672;ERATE=0.0003;THETA=0.0054;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134110324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6674;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134110345 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.946;LDAF=0.1290;AVGPOST=0.9847;RSQ=0.9559;ERATE=0.0008;THETA=0.0077;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 134110376 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7406;ERATE=0.0003;THETA=0.0113;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134110420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134110474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8177;ERATE=0.0003;THETA=0.0116;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134110476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.936;LDAF=0.0541;AVGPOST=0.9866;RSQ=0.9019;ERATE=0.0018;THETA=0.0129;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134110515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0071;AVGPOST=0.9979;RSQ=0.9020;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134110561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134110703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0075;AVGPOST=0.9989;RSQ=0.9397;ERATE=0.0004;THETA=0.0021;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134110731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8376;ERATE=0.0003;THETA=0.0094;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134110887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0163;AVGPOST=0.9989;RSQ=0.9702;ERATE=0.0003;THETA=0.0090;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134111027 rs71585136 TC T 20391 PASS INDEL;BAVGPOST=0.942;BRSQ=0.920;LDAF=0.5342;AVGPOST=0.9128;RSQ=0.8930;ERATE=0.0103;THETA=0.0064;AC=1193;AN=2184 GT:DS:GL:BD 0.54624540 1 1 134111065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0076;AVGPOST=0.9965;RSQ=0.8208;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134111089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0079;AVGPOST=0.9985;RSQ=0.9181;ERATE=0.0006;THETA=0.0053;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134111251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.764;LDAF=0.0165;AVGPOST=0.9959;RSQ=0.9004;ERATE=0.0007;THETA=0.0038;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134111310 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0003;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134111373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2445;AVGPOST=0.9920;RSQ=0.9846;ERATE=0.0005;THETA=0.0007;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 134111446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134111546 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.6021;AVGPOST=0.9873;RSQ=0.9804;ERATE=0.0005;THETA=0.0011;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 134111648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0205;AVGPOST=0.9986;RSQ=0.9755;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134111664 . AT A 1082 PASS INDEL;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8520;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134111666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134111733 rs34585512 CTG C 25029 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1385;AVGPOST=0.9944;RSQ=0.9825;ERATE=0.0005;THETA=0.0009;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 134111751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0092;AVGPOST=0.9992;RSQ=0.9639;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134111758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134112005 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134112058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7532;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134112064 . TTTG T 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134112090 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7179;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134112323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.9851;AVGPOST=0.9989;RSQ=0.9710;ERATE=0.0003;THETA=0.0016;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 134112390 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134112446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0280;AVGPOST=0.9951;RSQ=0.9285;ERATE=0.0006;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134112509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.537;LDAF=0.0139;AVGPOST=0.9859;RSQ=0.5715;ERATE=0.0012;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134112626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0264;AVGPOST=0.9910;RSQ=0.8642;ERATE=0.0006;THETA=0.0010;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134112632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0070;AVGPOST=0.9916;RSQ=0.5590;ERATE=0.0009;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134112634 . TG T 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0082;AVGPOST=0.9867;RSQ=0.3432;ERATE=0.0015;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134112673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0035;AVGPOST=0.9969;RSQ=0.6216;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134112677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.558;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6488;ERATE=0.0006;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134112751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134112758 . G GA 684 PASS INDEL;BAVGPOST=0.985;BRSQ=0.741;LDAF=0.0412;AVGPOST=0.9606;RSQ=0.6114;ERATE=0.0070;THETA=0.0008;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134112774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134112827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0083;AVGPOST=0.9979;RSQ=0.8951;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134112835 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134113026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5964;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134113061 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9801;ERATE=0.0003;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134113094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0031;AVGPOST=0.9971;RSQ=0.6441;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134113280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9084;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134113320 . ATAGAG A 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134113380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8181;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134113487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8885;AVGPOST=0.9972;RSQ=0.9898;ERATE=0.0003;THETA=0.0012;AC=1940;AN=2184 GT:DS:GL:BD 0.88827837 1 1 134113490 . GAGATTGACAA G 4332 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0149;AVGPOST=0.9989;RSQ=0.9732;ERATE=0.0002;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134113904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7865;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134113937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8867;AVGPOST=0.9971;RSQ=0.9899;ERATE=0.0004;THETA=0.0009;AC=1937;AN=2184 GT:DS:GL:BD 0.88690478 1 1 134113991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7774;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134114201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6647;ERATE=0.0002;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134114492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134114572 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.8202;ERATE=0.0002;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134114587 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5606;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134114608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6753;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134114690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8886;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134114740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134114803 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134114924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134114949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7249;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134114952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9421;ERATE=0.0002;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134114963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.7510;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134115357 . A AT 155 PASS INDEL;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8737;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134115398 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7976;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134115560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134115651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7779;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134115809 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7250;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134115813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8923;ERATE=0.0003;THETA=0.0092;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134115894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6211;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134116018 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7200;ERATE=0.0004;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134116124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7478;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134116168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134116368 . G GT 6803 PASS INDEL;BAVGPOST=0.856;BRSQ=0.601;LDAF=0.7153;AVGPOST=0.7987;RSQ=0.5754;ERATE=0.0775;THETA=0.0009;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 134116527 rs5776084 T TA 74756 PASS INDEL;BAVGPOST=0.993;BRSQ=0.963;LDAF=0.9043;AVGPOST=0.9900;RSQ=0.9548;ERATE=0.0007;THETA=0.0006;AC=1979;AN=2184 GT:DS:GL:BD 0.90613556 1 1 134116529 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7533;ERATE=0.0002;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134116631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1323;AVGPOST=0.9969;RSQ=0.9896;ERATE=0.0004;THETA=0.0008;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134116812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.4010;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134116901 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7679;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134117150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0045;AVGPOST=0.9958;RSQ=0.6256;ERATE=0.0008;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134117279 . C CA 519 PASS INDEL;BAVGPOST=0.838;BRSQ=0.269;LDAF=0.2106;AVGPOST=0.7428;RSQ=0.3512;ERATE=0.0383;THETA=0.0007;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134117330 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9968;RSQ=0.8803;ERATE=0.0007;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134117454 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9980;RSQ=0.9272;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134117465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8625;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134117470 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6526;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134117688 . AAC A 58 PASS INDEL;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.5924;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134117769 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134117788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9384;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134117829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0046;AVGPOST=0.9971;RSQ=0.7786;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134117830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7222;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134117950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134118129 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134118166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134118203 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134118209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134118215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134118301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7674;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0002;THETA=0.0004;AC=1677;AN=2184 GT:DS:GL:BD 0.76785713 1 1 134118382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8820;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134118505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0484;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0002;THETA=0.0008;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 134118517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6755;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134118583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.927;LDAF=0.0489;AVGPOST=0.9930;RSQ=0.9426;ERATE=0.0003;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134118705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5839;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134118712 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134118764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7516;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134118893 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1847;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134118912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7740;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134119154 . TCTTAC T 544 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9395;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134119207 . G GT 102 PASS INDEL;BAVGPOST=0.986;BRSQ=0.541;LDAF=0.0297;AVGPOST=0.9649;RSQ=0.5167;ERATE=0.0102;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134119492 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6649;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134119499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1429;ERATE=0.0004;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134119715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8637;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134119800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134119821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134119919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134120142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0002;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134120164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134120220 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134120227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1857;AVGPOST=0.9941;RSQ=0.9847;ERATE=0.0007;THETA=0.0008;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 134120431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.734;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8492;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134120478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9054;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134120645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6540;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0005;THETA=0.0013;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 134120650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0124;AVGPOST=0.9972;RSQ=0.9007;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134120713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134120741 . T TATGTTTTAAAA 637 PASS INDEL;BAVGPOST=0.997;BRSQ=0.389;LDAF=0.0171;AVGPOST=0.9729;RSQ=0.3720;ERATE=0.0021;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134120801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134120831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.952;LDAF=0.6635;AVGPOST=0.9903;RSQ=0.9829;ERATE=0.0004;THETA=0.0012;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 134121169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.533;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.6976;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134121183 rs77459806 C CA 397 PASS INDEL;BAVGPOST=0.934;BRSQ=0.558;LDAF=0.0987;AVGPOST=0.9337;RSQ=0.7105;ERATE=0.0062;THETA=0.0004;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 134121289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.909;LDAF=0.6194;AVGPOST=0.9107;RSQ=0.8507;ERATE=0.0214;THETA=0.0010;AC=1371;AN=2184 GT:DS:GL:BD 0.62774724 1 1 134121294 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.944;LDAF=0.6360;AVGPOST=0.9630;RSQ=0.9386;ERATE=0.0076;THETA=0.0006;AC=1395;AN=2184 GT:DS:GL:BD 0.63873625 1 1 134121305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7300;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134121327 . C CT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4967;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134121509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134121533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6661;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134121595 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5350;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134121777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6623;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134121866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4251;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134122117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4909;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134122241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0150;AVGPOST=0.9990;RSQ=0.9708;ERATE=0.0004;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134122344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.695;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8901;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134122348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8197;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134122475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.7000;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134122493 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5216;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134122498 . G GA 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.568;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5337;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134122538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9979;RSQ=0.9211;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134122550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134122665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.751;LDAF=0.0103;AVGPOST=0.9968;RSQ=0.8763;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134122686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1391;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 134122963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134123046 . CT C 382 PASS INDEL;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0066;AVGPOST=0.9966;RSQ=0.8007;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134123146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0054;AVGPOST=0.9994;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134123156 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9134;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134123227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134123353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7899;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134123457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134123566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1572;AVGPOST=0.9980;RSQ=0.9950;ERATE=0.0003;THETA=0.0006;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 134123588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0111;AVGPOST=0.9982;RSQ=0.9490;ERATE=0.0004;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134123765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134123858 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6932;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134123910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134123963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134123970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1212;AVGPOST=0.9978;RSQ=0.9924;ERATE=0.0005;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 134124016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134124273 . TG T 11256 PASS INDEL;BAVGPOST=0.978;BRSQ=0.923;LDAF=0.1586;AVGPOST=0.9838;RSQ=0.9609;ERATE=0.0004;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 134124330 . T TCC 18303 PASS INDEL;BAVGPOST=0.975;BRSQ=0.914;LDAF=0.1594;AVGPOST=0.9854;RSQ=0.9638;ERATE=0.0006;THETA=0.0004;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 134124338 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9725;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134124445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.505;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134124529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.758;LDAF=0.1521;AVGPOST=0.9361;RSQ=0.8299;ERATE=0.0037;THETA=0.0003;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 134124571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.769;LDAF=0.0084;AVGPOST=0.9963;RSQ=0.8162;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134124619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.828;LDAF=0.1370;AVGPOST=0.9850;RSQ=0.9518;ERATE=0.0008;THETA=0.0003;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 134124696 . C CA 1758 PASS INDEL;BAVGPOST=0.517;BRSQ=0.145;LDAF=0.5854;AVGPOST=0.6420;RSQ=0.3628;ERATE=0.0305;THETA=0.0006;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 134124701 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134124827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0033;AVGPOST=0.9964;RSQ=0.5388;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134124842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6697;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134124852 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134125076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9991;RSQ=0.9744;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134125198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1710;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 134125383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5843;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134125463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9672;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134125526 . TG T 18820 PASS INDEL;BAVGPOST=0.989;BRSQ=0.962;LDAF=0.1554;AVGPOST=0.9957;RSQ=0.9894;ERATE=0.0005;THETA=0.0005;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 134125538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134125550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.9955;AVGPOST=0.9995;RSQ=0.9619;ERATE=0.0003;THETA=0.0005;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 134125555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0230;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134125748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9668;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134125925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1559;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0007;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 134125937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9178;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134125944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.9953;AVGPOST=0.9996;RSQ=0.9584;ERATE=0.0003;THETA=0.0007;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 134125994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9993;RSQ=0.9757;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134126289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134126295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1384;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 134126508 rs10690773 G GTGGA 21447 PASS INDEL;BAVGPOST=0.990;BRSQ=0.945;LDAF=0.1006;AVGPOST=0.9945;RSQ=0.9781;ERATE=0.0004;THETA=0.0006;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 134126567 . A AT 1046 PASS INDEL;BAVGPOST=0.981;BRSQ=0.881;LDAF=0.0882;AVGPOST=0.9817;RSQ=0.9184;ERATE=0.0004;THETA=0.0007;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 134126571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7807;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134126630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134126639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134126705 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134126707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.9954;AVGPOST=0.9998;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 134126795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7286;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134126884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5708;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134126996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9728;ERATE=0.0003;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134127037 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134127052 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5356;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0004;THETA=0.0007;AC=1168;AN=2184 GT:DS:GL:BD 0.53479856 1 1 134127113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6259;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134127252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7644;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134127262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1177;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0023;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 134127435 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9345;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134127548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1820;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 134127582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1815;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 134127593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134127615 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0003;THETA=0.0020;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134127633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8529;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134127643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9242;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134127644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134127661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6776;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134127691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.6460;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134127745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134127750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134127860 rs113610789 TA T 25003 PASS INDEL;BAVGPOST=0.992;BRSQ=0.977;LDAF=0.1973;AVGPOST=0.9942;RSQ=0.9866;ERATE=0.0005;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 134127876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5360;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134127886 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134128132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9791;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134128241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134128418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6780;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134128423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134128478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0199;AVGPOST=0.9984;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134128531 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.376;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134128570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8368;AVGPOST=0.9978;RSQ=0.9928;ERATE=0.0006;THETA=0.0007;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 134128581 . TA T 869 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0093;AVGPOST=0.9977;RSQ=0.8993;ERATE=0.0006;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134128645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7430;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134128708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8281;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134128778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.970;LDAF=0.8587;AVGPOST=0.9915;RSQ=0.9726;ERATE=0.0013;THETA=0.0005;AC=1878;AN=2184 GT:DS:GL:BD 0.85989010 1 1 134128793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5672;ERATE=0.0007;THETA=0.0039;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134129015 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8924;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134129028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7625;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0004;THETA=0.0001;AC=1668;AN=2184 GT:DS:GL:BD 0.76373625 1 1 134129044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7628;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0006;THETA=0.0008;AC=1668;AN=2184 GT:DS:GL:BD 0.76373625 1 1 134129121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.7400;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134129282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9432;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134129289 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0021;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134129342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134129352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8993;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134129439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134129461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0189;AVGPOST=0.9990;RSQ=0.9838;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134129504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9160;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134129602 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0115;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134129789 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1322;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134129797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134129860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134129898 rs4147882 TA T 17937 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1327;AVGPOST=0.9979;RSQ=0.9928;ERATE=0.0003;THETA=0.0029;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134129942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134130019 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134130020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134130024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134130038 . GT G 155 PASS INDEL;BAVGPOST=0.955;BRSQ=0.422;LDAF=0.0462;AVGPOST=0.9410;RSQ=0.5073;ERATE=0.0017;THETA=0.0011;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134130058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.987;LDAF=0.5003;AVGPOST=0.9880;RSQ=0.9820;ERATE=0.0010;THETA=0.0024;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 134130112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0119;AVGPOST=0.9981;RSQ=0.9297;ERATE=0.0023;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134130131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134130202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134130214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6910;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134130222 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7602;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0005;THETA=0.0011;AC=1660;AN=2184 GT:DS:GL:BD 0.76007324 1 1 134130461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0218;AVGPOST=0.9972;RSQ=0.9553;ERATE=0.0004;THETA=0.0026;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134130660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8645;ERATE=0.0003;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134130728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6972;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134130753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134130856 rs34606095 G GC 84922 PASS INDEL;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.7670;AVGPOST=0.9858;RSQ=0.9695;ERATE=0.0010;THETA=0.0006;AC=1682;AN=2184 GT:DS:GL:BD 0.77014655 1 1 134130898 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134131125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8277;ERATE=0.0004;THETA=0.0108;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134131401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.966;LDAF=0.2290;AVGPOST=0.9821;RSQ=0.9643;ERATE=0.0007;THETA=0.0126;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 134131402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8818;ERATE=0.0004;THETA=0.0143;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134131476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.603;LDAF=0.0256;AVGPOST=0.9713;RSQ=0.5585;ERATE=0.0090;THETA=0.0059;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134131498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9646;ERATE=0.0003;THETA=0.0094;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134131547 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9601;ERATE=0.0003;THETA=0.0036;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134131556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7932;ERATE=0.0006;THETA=0.0067;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134131584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.898;LDAF=0.0128;AVGPOST=0.9973;RSQ=0.9112;ERATE=0.0004;THETA=0.0082;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134131700 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4808;ERATE=0.0004;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134131720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0004;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134131881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0004;THETA=0.0031;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134131909 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0102;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134131914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0005;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134131970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.565;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5205;ERATE=0.0003;THETA=0.0078;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134132188 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134132190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9275;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134132286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9591;ERATE=0.0003;THETA=0.0048;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134132353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0058;AVGPOST=0.9988;RSQ=0.9054;ERATE=0.0005;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134132382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0003;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134132528 . G GC 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0037;AVGPOST=0.9936;RSQ=0.3108;ERATE=0.0008;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134132529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.757;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8397;ERATE=0.0003;THETA=0.0069;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134132534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0186;AVGPOST=0.9985;RSQ=0.9661;ERATE=0.0004;THETA=0.0040;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134132585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.962;LDAF=0.4668;AVGPOST=0.9759;RSQ=0.9664;ERATE=0.0011;THETA=0.0030;AC=1021;AN=2184 GT:DS:GL:BD 0.46749085 0 1 134132625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6982;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134132666 . CT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134132689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7875;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134132831 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9710;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134132916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0208;AVGPOST=0.9964;RSQ=0.9280;ERATE=0.0016;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134132958 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.967;LDAF=0.2254;AVGPOST=0.9842;RSQ=0.9646;ERATE=0.0005;THETA=0.0005;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 134132959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.958;LDAF=0.0186;AVGPOST=0.9981;RSQ=0.9544;ERATE=0.0004;THETA=0.0017;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134133015 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5055;AVGPOST=0.9974;RSQ=0.9970;ERATE=0.0004;THETA=0.0005;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 134133626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8291;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134133627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2001;AVGPOST=0.9944;RSQ=0.9872;ERATE=0.0008;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 134133807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5833;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134133819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6944;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134133861 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134133924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.3899;AVGPOST=0.9874;RSQ=0.9833;ERATE=0.0020;THETA=0.0094;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 134134001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134134026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.939;LDAF=0.0419;AVGPOST=0.9933;RSQ=0.9414;ERATE=0.0005;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134134062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.6352;AVGPOST=0.9690;RSQ=0.9574;ERATE=0.0101;THETA=0.0115;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 134134121 . TCTC T 351 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0098;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134134156 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8047;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134134463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.9079;ERATE=0.0003;THETA=0.0033;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134134474 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1588;AVGPOST=0.9965;RSQ=0.9886;ERATE=0.0004;THETA=0.0033;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 134134544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4638;ERATE=0.0005;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134134571 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0178;AVGPOST=0.9978;RSQ=0.9499;ERATE=0.0007;THETA=0.0044;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134134653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.863;LDAF=0.2301;AVGPOST=0.9500;RSQ=0.9075;ERATE=0.0012;THETA=0.0009;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 134134676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5861;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134134779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0044;AVGPOST=0.9970;RSQ=0.7194;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134134817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.957;LDAF=0.3646;AVGPOST=0.9603;RSQ=0.9388;ERATE=0.0244;THETA=0.0034;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 134134829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134134835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134134919 . T TC 135 PASS INDEL;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0043;AVGPOST=0.9956;RSQ=0.5785;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134134961 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134135074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134135159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8419;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134135262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8244;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134135455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6901;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134135466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9489;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134135667 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3578;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0005;THETA=0.0003;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 134135710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8694;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134135800 . TA T 92 PASS INDEL;BAVGPOST=0.988;BRSQ=0.534;LDAF=0.0272;AVGPOST=0.9645;RSQ=0.4735;ERATE=0.0059;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134135844 . GA G 9416 PASS INDEL;BAVGPOST=0.989;BRSQ=0.977;LDAF=0.2915;AVGPOST=0.9916;RSQ=0.9855;ERATE=0.0005;THETA=0.0003;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 134136001 rs34770891 AATT A 50955 PASS INDEL;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.2952;AVGPOST=0.9915;RSQ=0.9849;ERATE=0.0009;THETA=0.0002;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 134136002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0159;AVGPOST=0.9978;RSQ=0.9390;ERATE=0.0005;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134136115 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134136162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134136314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3590;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 134136599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.6066;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134136778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0551;AVGPOST=0.9984;RSQ=0.9885;ERATE=0.0004;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 134136785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4758;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134136845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2942;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 134137048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0046;AVGPOST=0.9973;RSQ=0.8021;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134137187 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4585;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134137199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.9797;AVGPOST=0.9983;RSQ=0.9719;ERATE=0.0003;THETA=0.0003;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 134137330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134137607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134137660 . C CT 625 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0055;AVGPOST=0.9975;RSQ=0.8251;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134137949 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134137965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0061;AVGPOST=0.9939;RSQ=0.6080;ERATE=0.0006;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134138053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8913;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134138105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.473;LDAF=0.0026;AVGPOST=0.9960;RSQ=0.4321;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134138178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3972;AVGPOST=0.9955;RSQ=0.9927;ERATE=0.0010;THETA=0.0005;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 134138214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0043;AVGPOST=0.9955;RSQ=0.5803;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134138255 rs60179780 TA T 3061 PASS INDEL;BAVGPOST=0.916;BRSQ=0.654;LDAF=0.1385;AVGPOST=0.9328;RSQ=0.8018;ERATE=0.0013;THETA=0.0003;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 134138324 . T TTA 2934 PASS INDEL;BAVGPOST=0.938;BRSQ=0.723;LDAF=0.1127;AVGPOST=0.9552;RSQ=0.8337;ERATE=0.0008;THETA=0.0003;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 134138331 . T TA 1317 PASS INDEL;BAVGPOST=0.932;BRSQ=0.687;LDAF=0.0980;AVGPOST=0.9347;RSQ=0.7244;ERATE=0.0035;THETA=0.0017;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 134138332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3982;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0006;THETA=0.0003;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 134138429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9985;RSQ=0.9346;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134138537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.942;LDAF=0.6115;AVGPOST=0.9051;RSQ=0.8502;ERATE=0.0120;THETA=0.0003;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 134138591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0650;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0002;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134138798 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7854;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134138952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0073;AVGPOST=0.9994;RSQ=0.9651;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134138994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1724;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 134139007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9281;ERATE=0.0002;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134139149 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0186;AVGPOST=0.9994;RSQ=0.9861;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134139247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0242;AVGPOST=0.9992;RSQ=0.9869;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134139399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6684;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134139472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4231;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139479 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5661;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139503 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139585 . TCA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139591 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9983;RSQ=0.3294;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9993;RSQ=0.9746;ERATE=0.0003;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134139723 . AAC A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5744;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134139762 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6481;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134139791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134139837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134139838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134139839 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7770;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134139977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134139999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5516;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 134140172 . TG T 4615 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0245;AVGPOST=0.9990;RSQ=0.9830;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134140273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134140345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7773;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134140347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134140375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9012;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134140515 . AAT A 102 PASS INDEL;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5173;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134140527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0806;AVGPOST=0.9972;RSQ=0.9874;ERATE=0.0004;THETA=0.0003;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 134140549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134140590 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8573;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134140671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0060;AVGPOST=0.9984;RSQ=0.8940;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134140723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1722;AVGPOST=0.9962;RSQ=0.9913;ERATE=0.0004;THETA=0.0004;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 134140743 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5839;AVGPOST=0.9958;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=1275;AN=2184 GT:DS:GL:BD 0.58379120 1 1 134140765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0649;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0002;THETA=0.0002;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134140802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0670;AVGPOST=0.9983;RSQ=0.9897;ERATE=0.0003;THETA=0.0060;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 134140930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5367;AVGPOST=0.9972;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 134141031 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8879;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134141071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8779;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134141080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7853;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134141291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4200;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0005;THETA=0.0004;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 134141320 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4939;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134141330 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2811;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0005;THETA=0.0005;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 134141340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0048;AVGPOST=0.9989;RSQ=0.9151;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134141384 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7958;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134141437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134141499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4435;AVGPOST=0.9982;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 134141559 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3864;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0003;THETA=0.0008;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 134141602 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6533;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134141606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0335;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134141859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134141878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9761;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0002;THETA=0.0004;AC=2132;AN=2184 GT:DS:GL:BD 0.97619045 1 1 134141927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8205;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134141941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9782;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134141942 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7797;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134142098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8001;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134142210 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.637;LDAF=0.0042;AVGPOST=0.9964;RSQ=0.6646;ERATE=0.0008;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134142366 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9665;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134142466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8657;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134142468 . CT C 290 PASS INDEL;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8049;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134142632 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7351;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134142660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7732;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134142688 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134142798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6858;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134142907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2348;AVGPOST=0.9914;RSQ=0.9859;ERATE=0.0007;THETA=0.0003;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 134142989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4435;AVGPOST=0.9951;RSQ=0.9924;ERATE=0.0008;THETA=0.0003;AC=971;AN=2184 GT:DS:GL:BD 0.44459707 0 1 134143005 . AAAT A 502 PASS INDEL;BAVGPOST=0.996;BRSQ=0.726;LDAF=0.0077;AVGPOST=0.9952;RSQ=0.7376;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134143020 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.928;LDAF=0.1347;AVGPOST=0.9866;RSQ=0.9588;ERATE=0.0012;THETA=0.0004;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 134143195 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.661;LDAF=0.0150;AVGPOST=0.9906;RSQ=0.7520;ERATE=0.0010;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134143199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0039;AVGPOST=0.9955;RSQ=0.5874;ERATE=0.0011;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134143262 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134143405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8597;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134143444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134143465 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134143511 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6798;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134143569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2479;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 134143576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6995;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134143611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6673;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134143613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7238;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134143686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5446;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134143784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134143813 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6694;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134143941 . GA G 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5104;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134144036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7847;ERATE=0.0008;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134144112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9630;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134144327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0466;AVGPOST=0.9973;RSQ=0.9769;ERATE=0.0003;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 134144342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0103;AVGPOST=0.9973;RSQ=0.8972;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134144530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134144607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6752;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134144683 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0170;AVGPOST=0.9991;RSQ=0.9801;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134144750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9623;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134144863 . TC T 33618 PASS INDEL;BAVGPOST=0.937;BRSQ=0.297;LDAF=0.9430;AVGPOST=0.9212;RSQ=0.4353;ERATE=0.0071;THETA=0.0003;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 134144948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134145037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7778;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134145106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0670;AVGPOST=0.9977;RSQ=0.9847;ERATE=0.0003;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 134145277 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134145611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6351;ERATE=0.0012;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134145657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134145698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.849;LDAF=0.0151;AVGPOST=0.9959;RSQ=0.8993;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134145713 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8976;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134145733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3788;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0006;THETA=0.0005;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134145776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3780;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0006;THETA=0.0005;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134146103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2874;AVGPOST=0.9961;RSQ=0.9927;ERATE=0.0007;THETA=0.0003;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 134146108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0072;AVGPOST=0.9961;RSQ=0.7751;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134146150 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.726;LDAF=0.0051;AVGPOST=0.9958;RSQ=0.7037;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134146250 . CTTAA C 57 PASS INDEL;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4622;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134146260 rs66488804 AATT A 34101 PASS INDEL;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.3789;AVGPOST=0.9730;RSQ=0.9592;ERATE=0.0045;THETA=0.0004;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134146304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1379;AVGPOST=0.9978;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 134146348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0100;AVGPOST=0.9984;RSQ=0.9375;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134146409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9656;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134146418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3787;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134146502 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5532;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134146537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3795;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0009;THETA=0.0004;AC=828;AN=2184 GT:DS:GL:BD 0.37912089 0 1 134146573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9818;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134146574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8097;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134146588 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0069;AVGPOST=0.9982;RSQ=0.9017;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134146748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2220;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 134146773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134146786 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2221;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 134146848 rs78472874 T TCA 11894 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1019;AVGPOST=0.9978;RSQ=0.9911;ERATE=0.0004;THETA=0.0003;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 134146933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.910;LDAF=0.4359;AVGPOST=0.9741;RSQ=0.9638;ERATE=0.0009;THETA=0.0005;AC=953;AN=2184 GT:DS:GL:BD 0.43635532 0 1 134146962 . CATTT C 14330 PASS INDEL;BAVGPOST=0.974;BRSQ=0.943;LDAF=0.2786;AVGPOST=0.9733;RSQ=0.9514;ERATE=0.0045;THETA=0.0005;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 134147104 rs10598574 ATTTAT A 39861 PASS INDEL;BAVGPOST=0.982;BRSQ=0.965;LDAF=0.2882;AVGPOST=0.9929;RSQ=0.9866;ERATE=0.0008;THETA=0.0005;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 134147105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5279;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134147152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6563;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134147232 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1472;AVGPOST=0.9984;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 134147269 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7271;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134147351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134147388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7040;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134147481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2222;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0005;THETA=0.0002;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 134147488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9752;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134147543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0003;THETA=0.0001;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134147553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7328;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134147679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9452;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134147850 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3761;AVGPOST=0.9958;RSQ=0.9937;ERATE=0.0005;THETA=0.0003;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 134147876 . G GT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4289;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134147995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1035;AVGPOST=0.9958;RSQ=0.9863;ERATE=0.0003;THETA=0.0002;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 134148113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0109;AVGPOST=0.9971;RSQ=0.9066;ERATE=0.0005;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134148162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9994;RSQ=0.9701;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134148298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0071;AVGPOST=0.9967;RSQ=0.8139;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134148322 . CATATT C 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134148324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3787;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0007;THETA=0.0002;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134148382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134148417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134148419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3781;AVGPOST=0.9955;RSQ=0.9932;ERATE=0.0005;THETA=0.0002;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134148432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0087;AVGPOST=0.9973;RSQ=0.8806;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134148470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7299;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0005;THETA=0.0006;AC=1594;AN=2184 GT:DS:GL:BD 0.72985345 1 1 134148564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4555;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134148574 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134148659 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5270;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134148787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0081;AVGPOST=0.9971;RSQ=0.8646;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134148919 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.9087;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134148983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134148988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9536;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134148997 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7540;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134149010 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6404;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 134149023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6458;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0008;THETA=0.0002;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 134149089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134149095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4956;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134149201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0270;AVGPOST=0.9995;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134149334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6396;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=1396;AN=2184 GT:DS:GL:BD 0.63919413 1 1 134149501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134149507 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6378;AVGPOST=0.9932;RSQ=0.9894;ERATE=0.0013;THETA=0.0002;AC=1394;AN=2184 GT:DS:GL:BD 0.63827837 1 1 134149549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.9889;AVGPOST=0.9971;RSQ=0.8887;ERATE=0.0006;THETA=0.0002;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 134149557 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3978;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0005;THETA=0.0001;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 134149650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0038;AVGPOST=0.9950;RSQ=0.5095;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134149714 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6473;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134149742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134149757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134149761 rs111795629 T TTTTG 103956 PASS INDEL;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.6596;AVGPOST=0.9756;RSQ=0.9627;ERATE=0.0055;THETA=0.0003;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 134149772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134149810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6044;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134149842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0062;AVGPOST=0.9991;RSQ=0.9371;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134149852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.1665;AVGPOST=0.9923;RSQ=0.9831;ERATE=0.0006;THETA=0.0002;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 134149862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4237;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134149870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0132;AVGPOST=0.9977;RSQ=0.9412;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134149872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9902;AVGPOST=0.9993;RSQ=0.9640;ERATE=0.0005;THETA=0.0002;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 134149954 . TAA T 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0027;AVGPOST=0.9956;RSQ=0.4297;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134150060 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6634;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134150114 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6495;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134150158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7329;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134150185 rs71590246 TTAAA T 2921 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0136;AVGPOST=0.9970;RSQ=0.9183;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134150191 . A ACCAT 710 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7838;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134150313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134150359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134150387 . T TG 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.426;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4158;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134150437 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5757;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134150482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0154;AVGPOST=0.9958;RSQ=0.8882;ERATE=0.0005;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134150666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0313;AVGPOST=0.9985;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134150683 . CCA C 186 PASS INDEL;BAVGPOST=0.988;BRSQ=0.705;LDAF=0.0353;AVGPOST=0.9629;RSQ=0.5500;ERATE=0.0125;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134150785 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.877;LDAF=0.0186;AVGPOST=0.9953;RSQ=0.8979;ERATE=0.0005;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134151142 . CTG C 395 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9987;RSQ=0.9448;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134151171 . AGG A 427 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9291;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134151179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8080;ERATE=0.0011;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134151188 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134151191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134151446 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5316;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134151568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5292;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134151802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134151826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6424;AVGPOST=0.9917;RSQ=0.9873;ERATE=0.0013;THETA=0.0002;AC=1399;AN=2184 GT:DS:GL:BD 0.64056778 1 1 134151954 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.8274;AVGPOST=0.9942;RSQ=0.9869;ERATE=0.0003;THETA=0.0002;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 134151975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.9051;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134151987 . GTTA G 120 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5382;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4969;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152205 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0131;AVGPOST=0.9982;RSQ=0.9451;ERATE=0.0004;THETA=0.0044;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134152278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6700;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134152440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0236;AVGPOST=0.9991;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134152482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6418;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152486 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7206;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134152522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0054;AVGPOST=0.9988;RSQ=0.9053;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134152580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6288;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134152643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8922;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134152751 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7718;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134152880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134152919 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0046;AVGPOST=0.9973;RSQ=0.7659;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134153019 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4807;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134153060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6394;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134153081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8464;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134153193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5466;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134153199 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7122;ERATE=0.0008;THETA=0.0041;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134153205 . G GA 1935 PASS INDEL;BAVGPOST=0.993;BRSQ=0.794;LDAF=0.0181;AVGPOST=0.9930;RSQ=0.8558;ERATE=0.0006;THETA=0.0025;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134153221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2325;AVGPOST=0.9969;RSQ=0.9928;ERATE=0.0003;THETA=0.0006;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 134153225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7040;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134153535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134153674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.868;LDAF=0.0314;AVGPOST=0.9958;RSQ=0.9472;ERATE=0.0004;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 134153709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0344;AVGPOST=0.9983;RSQ=0.9780;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134153768 . G GA 985 PASS INDEL;BAVGPOST=0.978;BRSQ=0.729;LDAF=0.0494;AVGPOST=0.9875;RSQ=0.8936;ERATE=0.0005;THETA=0.0006;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134153779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0386;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0007;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134153914 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0442;AVGPOST=0.9934;RSQ=0.9371;ERATE=0.0009;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134154036 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.4890;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134154159 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0050;AVGPOST=0.9979;RSQ=0.8154;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134154178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134154211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0440;AVGPOST=0.9994;RSQ=0.9939;ERATE=0.0004;THETA=0.0006;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 134154245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0113;AVGPOST=0.9964;RSQ=0.8937;ERATE=0.0005;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134154367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9416;ERATE=0.0004;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134154388 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0331;AVGPOST=0.9982;RSQ=0.9762;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134154458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0707;AVGPOST=0.9976;RSQ=0.9841;ERATE=0.0005;THETA=0.0010;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 134154512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.961;LDAF=0.0791;AVGPOST=0.9976;RSQ=0.9853;ERATE=0.0003;THETA=0.0007;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 134155040 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8147;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134155091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.836;LDAF=0.1821;AVGPOST=0.9587;RSQ=0.9168;ERATE=0.0036;THETA=0.0008;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134155157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6668;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134155305 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.872;LDAF=0.0947;AVGPOST=0.9782;RSQ=0.9203;ERATE=0.0023;THETA=0.0005;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 134155357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.824;LDAF=0.0257;AVGPOST=0.9926;RSQ=0.9015;ERATE=0.0003;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134155371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.917;LDAF=0.0394;AVGPOST=0.9979;RSQ=0.9736;ERATE=0.0006;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134155387 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.467;LDAF=0.0028;AVGPOST=0.9964;RSQ=0.4150;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134155547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0762;AVGPOST=0.9988;RSQ=0.9922;ERATE=0.0004;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 134155553 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134155601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0345;AVGPOST=0.9985;RSQ=0.9809;ERATE=0.0004;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134155649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134155706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0279;AVGPOST=0.9953;RSQ=0.9280;ERATE=0.0008;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134155794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0284;AVGPOST=0.9965;RSQ=0.9476;ERATE=0.0007;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134155934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4934;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134156106 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4825;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134156287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5659;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134156305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.4670;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134156326 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134156329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.778;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.6705;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134156423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0782;AVGPOST=0.9972;RSQ=0.9847;ERATE=0.0004;THETA=0.0002;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 134156441 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8600;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134156445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6394;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134156454 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6899;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134156468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0344;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134156634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2283;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 134156703 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0344;AVGPOST=0.9991;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134156770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134156867 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7230;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134156974 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5866;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134157020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134157030 . C CT 13 PASS INDEL;BAVGPOST=0.990;BRSQ=0.370;LDAF=0.0203;AVGPOST=0.9688;RSQ=0.3865;ERATE=0.0057;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134157123 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0068;AVGPOST=0.9981;RSQ=0.8965;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134157139 . A AAT 160 PASS INDEL;BAVGPOST=0.998;BRSQ=0.723;LDAF=0.0090;AVGPOST=0.9873;RSQ=0.4504;ERATE=0.0030;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134157214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1736;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0004;THETA=0.0005;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 134157241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7837;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134157353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9865;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134157405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2216;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 134157528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134157532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4974;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134157644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134157657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134157674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0344;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134157688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9103;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134157705 . CTA C 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5941;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134157754 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134157798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0761;AVGPOST=0.9992;RSQ=0.9949;ERATE=0.0003;THETA=0.0007;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 134157919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7140;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134157940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134157941 rs56803833 ACAAAATCTGT A 33239 PASS INDEL;BAVGPOST=0.973;BRSQ=0.939;LDAF=0.2536;AVGPOST=0.9940;RSQ=0.9878;ERATE=0.0008;THETA=0.0004;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 134158060 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0389;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0008;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134158105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9835;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134158229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0155;AVGPOST=0.9948;RSQ=0.8761;ERATE=0.0003;THETA=0.0010;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134158397 . TTATA T 5526 PASS INDEL;BAVGPOST=0.985;BRSQ=0.898;LDAF=0.0681;AVGPOST=0.9883;RSQ=0.9240;ERATE=0.0009;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 134158464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.919;LDAF=0.0424;AVGPOST=0.9803;RSQ=0.7912;ERATE=0.0013;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134158468 . TAGATAA T 1955 PASS INDEL;BAVGPOST=0.987;BRSQ=0.812;LDAF=0.0369;AVGPOST=0.9930;RSQ=0.9145;ERATE=0.0006;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134158483 . G GAT 3075 PASS INDEL;BAVGPOST=0.874;BRSQ=0.695;LDAF=0.2473;AVGPOST=0.8087;RSQ=0.6085;ERATE=0.0317;THETA=0.0008;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 134158485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0067;AVGPOST=0.9924;RSQ=0.5735;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134158497 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5961;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134158639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134158674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134158735 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134158787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0527;AVGPOST=0.9989;RSQ=0.9909;ERATE=0.0004;THETA=0.0006;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134158946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8962;ERATE=0.0004;THETA=0.0038;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134158999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6891;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134159041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0518;AVGPOST=0.9990;RSQ=0.9929;ERATE=0.0003;THETA=0.0009;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134159123 . C CG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3942;ERATE=0.0007;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134159193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0521;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0010;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134159230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3430;AVGPOST=0.9927;RSQ=0.9880;ERATE=0.0005;THETA=0.0005;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 134159418 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0050;AVGPOST=0.9979;RSQ=0.8194;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134159471 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0373;AVGPOST=0.9956;RSQ=0.9568;ERATE=0.0004;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134159566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0043;AVGPOST=0.9954;RSQ=0.5992;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134159576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0167;AVGPOST=0.9981;RSQ=0.9524;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134159596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.501;LDAF=0.0191;AVGPOST=0.9758;RSQ=0.5008;ERATE=0.0042;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134159700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4727;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134159734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0531;AVGPOST=0.9985;RSQ=0.9892;ERATE=0.0004;THETA=0.0018;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 134159779 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134160157 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3420;AVGPOST=0.9939;RSQ=0.9897;ERATE=0.0006;THETA=0.0004;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 134160237 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5524;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134160259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160287 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160404 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0209;AVGPOST=0.9993;RSQ=0.9861;ERATE=0.0003;THETA=0.0009;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134160405 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134160454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0521;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0009;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134160485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134160515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0528;AVGPOST=0.9985;RSQ=0.9912;ERATE=0.0003;THETA=0.0008;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134160540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4916;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134160867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134160879 rs72227440 TGA T 9544 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0731;AVGPOST=0.9968;RSQ=0.9827;ERATE=0.0004;THETA=0.0008;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 134160922 . AGT A 902 PASS INDEL;BAVGPOST=0.986;BRSQ=0.907;LDAF=0.0768;AVGPOST=0.9896;RSQ=0.9447;ERATE=0.0011;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 134160930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134161019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7918;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134161203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134161356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9982;RSQ=0.9349;ERATE=0.0004;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134161433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0045;AVGPOST=0.9955;RSQ=0.6134;ERATE=0.0007;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134161447 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0533;AVGPOST=0.9989;RSQ=0.9919;ERATE=0.0004;THETA=0.0006;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 134161652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0738;AVGPOST=0.9985;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 134161670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9485;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134161694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6300;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134161794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0520;AVGPOST=0.9991;RSQ=0.9937;ERATE=0.0003;THETA=0.0009;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134161813 rs28364891 C CA 9577 PASS INDEL;BAVGPOST=0.975;BRSQ=0.877;LDAF=0.1247;AVGPOST=0.9312;RSQ=0.7751;ERATE=0.0170;THETA=0.0008;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 134161823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0521;AVGPOST=0.9993;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134161839 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.2027;ERATE=0.0005;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134161908 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134161960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7873;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134161991 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.9191;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134162014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0153;AVGPOST=0.9973;RSQ=0.9216;ERATE=0.0008;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134162126 . GCA G 281 PASS INDEL;BAVGPOST=0.981;BRSQ=0.674;LDAF=0.0419;AVGPOST=0.9603;RSQ=0.5922;ERATE=0.0194;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134162127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134162245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134162280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134162341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8441;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0007;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 134162552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134162568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0521;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0037;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134162740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0507;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134162836 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134162839 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0507;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134162876 . G GA 356 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8402;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134163026 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134163075 . AT A 418 PASS INDEL;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0047;AVGPOST=0.9983;RSQ=0.8556;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134163095 rs66530617 G GA 94 PASS INDEL;BAVGPOST=0.977;BRSQ=0.519;LDAF=0.0451;AVGPOST=0.9399;RSQ=0.4557;ERATE=0.0169;THETA=0.0015;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134163165 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6463;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134163432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0508;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0005;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134163474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.9232;AVGPOST=0.9979;RSQ=0.9887;ERATE=0.0005;THETA=0.0005;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 134163489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6249;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134163526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9214;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134163581 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5960;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134163620 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9371;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134163628 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7567;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134163636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6900;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134163753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1333;AVGPOST=0.9984;RSQ=0.9950;ERATE=0.0004;THETA=0.0002;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 134163764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8734;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134163789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134163815 . CT C 64 PASS INDEL;BAVGPOST=0.994;BRSQ=0.718;LDAF=0.0164;AVGPOST=0.9839;RSQ=0.6020;ERATE=0.0040;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134163823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4675;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134163921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8160;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134164015 rs59419209 AAAG A 17267 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1309;AVGPOST=0.9987;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 134164056 rs79564969 CT C 89349 PASS INDEL;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.8813;AVGPOST=0.9882;RSQ=0.9597;ERATE=0.0033;THETA=0.0004;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 134164242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0084;AVGPOST=0.9988;RSQ=0.9415;ERATE=0.0003;THETA=0.0001;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134164282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1303;AVGPOST=0.9985;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 134164284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0158;AVGPOST=0.9994;RSQ=0.9824;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134164384 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134164421 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134164447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134164532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134164647 . GA G 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9072;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134164694 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5372;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134164716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9438;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134164850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1353;AVGPOST=0.9937;RSQ=0.9805;ERATE=0.0007;THETA=0.0002;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 134164926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.407;LDAF=0.0073;AVGPOST=0.9894;RSQ=0.4438;ERATE=0.0011;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134164988 rs66791653 AAG A 26528 PASS INDEL;BAVGPOST=0.957;BRSQ=0.781;LDAF=0.8764;AVGPOST=0.9160;RSQ=0.7161;ERATE=0.0082;THETA=0.0003;AC=1963;AN=2184 GT:DS:GL:BD 0.89880955 1 1 134165001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8933;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8241;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134165104 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134165114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0872;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134165135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1407;AVGPOST=0.9979;RSQ=0.9931;ERATE=0.0003;THETA=0.0002;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 134165155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0096;AVGPOST=0.9985;RSQ=0.9427;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134165217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0322;AVGPOST=0.9968;RSQ=0.9598;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134165268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5716;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134165275 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165336 . AG A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134165415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134165428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134165436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8071;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134165459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0103;AVGPOST=0.9994;RSQ=0.9781;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134165559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9337;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134165562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0874;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134165565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7418;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134165567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165698 . AGTT A 435 PASS INDEL;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7158;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165795 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134165850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7882;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134165875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134166090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134166195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9188;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134166211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134166214 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134166219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134166236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134166240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134166284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7697;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134166306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0029;AVGPOST=0.9962;RSQ=0.5544;ERATE=0.0013;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134166325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134166560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134166666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134166727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134166734 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1306;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 134166840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134166930 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134166947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9449;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134166961 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7725;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134167080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167104 . G GT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7461;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134167217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9769;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134167225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2039;AVGPOST=0.9946;RSQ=0.9867;ERATE=0.0004;THETA=0.0004;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 134167288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9408;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134167290 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0195;AVGPOST=0.9989;RSQ=0.9754;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134167413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134167434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7386;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134167551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9759;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134167552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0487;AVGPOST=0.9995;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 134167675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134167679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0094;AVGPOST=0.9979;RSQ=0.9095;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134167701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167725 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134167825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8956;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134167827 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1312;AVGPOST=0.9987;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 134167974 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9313;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134167986 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0366;AVGPOST=0.9976;RSQ=0.9739;ERATE=0.0003;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134168025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5858;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134168046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8552;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134168084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7421;AVGPOST=0.9965;RSQ=0.9926;ERATE=0.0005;THETA=0.0005;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 134168111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134168228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134168242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134168313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134168358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.9417;AVGPOST=0.9979;RSQ=0.9866;ERATE=0.0003;THETA=0.0010;AC=2056;AN=2184 GT:DS:GL:BD 0.94139194 1 1 134168361 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134168400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134168476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7622;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134168527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0065;AVGPOST=0.9994;RSQ=0.9583;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134168597 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8364;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134168699 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8887;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134168784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0267;AVGPOST=0.9985;RSQ=0.9797;ERATE=0.0002;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134169040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5580;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8587;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134169280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6119;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134169385 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134169393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8047;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134169414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1575;AVGPOST=0.9980;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 134169441 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134169516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5397;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169583 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5000;AVGPOST=0.9967;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 134169673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5377;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134169761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8275;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134170315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5035;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134170357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134170383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.602;LDAF=0.0066;AVGPOST=0.9983;RSQ=0.8836;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134170429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0031;AVGPOST=0.9956;RSQ=0.4680;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134170578 rs34775420 C CTG 66420 PASS INDEL;BAVGPOST=0.991;BRSQ=0.675;LDAF=0.9701;AVGPOST=0.9681;RSQ=0.5995;ERATE=0.0038;THETA=0.0005;AC=2129;AN=2184 GT:DS:GL:BD 0.97481686 1 1 134170767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.422;LDAF=0.0098;AVGPOST=0.9900;RSQ=0.5878;ERATE=0.0011;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134170874 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.655;LDAF=0.6795;AVGPOST=0.7797;RSQ=0.6116;ERATE=0.0444;THETA=0.0005;AC=1585;AN=2184 GT:DS:GL:BD 0.72573262 1 1 134170910 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.290;LDAF=0.9411;AVGPOST=0.9348;RSQ=0.5512;ERATE=0.0039;THETA=0.0013;AC=2081;AN=2184 GT:DS:GL:BD 0.95283884 1 1 134170912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5770;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134170953 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0030;AVGPOST=0.9959;RSQ=0.4599;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134171034 rs68090356 ACT A 1033 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0132;AVGPOST=0.9975;RSQ=0.9213;ERATE=0.0007;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134171134 rs71959318 ATC A 10608 PASS INDEL;BAVGPOST=0.987;BRSQ=0.970;LDAF=0.2588;AVGPOST=0.9794;RSQ=0.9589;ERATE=0.0009;THETA=0.0005;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 134171143 . GTA G 1692 PASS INDEL;BAVGPOST=0.746;BRSQ=0.250;LDAF=0.2771;AVGPOST=0.6709;RSQ=0.2797;ERATE=0.0604;THETA=0.0006;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 134171205 . G GTA 1660 PASS INDEL;BAVGPOST=0.977;BRSQ=0.770;LDAF=0.0797;AVGPOST=0.9508;RSQ=0.7558;ERATE=0.0026;THETA=0.0037;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134171249 rs72290555 GTATA G 21902 PASS INDEL;BAVGPOST=0.710;BRSQ=0.464;LDAF=0.5358;AVGPOST=0.6830;RSQ=0.4554;ERATE=0.0543;THETA=0.0005;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 134171281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.247;LDAF=0.1094;AVGPOST=0.8505;RSQ=0.3814;ERATE=0.0152;THETA=0.0041;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134171314 . T TAC 460 PASS INDEL;BAVGPOST=0.953;BRSQ=0.199;LDAF=0.0888;AVGPOST=0.8884;RSQ=0.4474;ERATE=0.0060;THETA=0.0013;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 134171336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.705;BRSQ=0.456;LDAF=0.5853;AVGPOST=0.6751;RSQ=0.3968;ERATE=0.0766;THETA=0.0006;AC=1366;AN=2184 GT:DS:GL:BD 0.62545788 1 1 134171338 rs60389606 TAC T 12957 PASS INDEL;BAVGPOST=0.931;BRSQ=0.252;LDAF=0.8991;AVGPOST=0.8802;RSQ=0.4968;ERATE=0.0063;THETA=0.0005;AC=2024;AN=2184 GT:DS:GL:BD 0.92673993 1 1 134171455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.883;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0002;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134171630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.665;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8336;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134171654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9901;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134171718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8114;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134171738 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9888;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134171771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5370;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134171779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134172063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5531;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134172156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.9990;AVGPOST=0.9989;RSQ=0.6167;ERATE=0.0003;THETA=0.0006;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 134172183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0093;AVGPOST=0.9987;RSQ=0.9443;ERATE=0.0002;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134172265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8314;AVGPOST=0.9978;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=1815;AN=2184 GT:DS:GL:BD 0.83104396 1 1 134172273 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.504;LDAF=0.9177;AVGPOST=0.9154;RSQ=0.5969;ERATE=0.0168;THETA=0.0008;AC=2046;AN=2184 GT:DS:GL:BD 0.93681318 1 1 134172433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0145;AVGPOST=0.9968;RSQ=0.9109;ERATE=0.0008;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134172446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7758;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134172548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134172622 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5097;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134172631 . TAA T 430 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9198;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134172635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0217;AVGPOST=0.9987;RSQ=0.9746;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134172653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0094;AVGPOST=0.9985;RSQ=0.9335;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134172680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6463;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134172695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7077;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134172696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6054;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134172753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0258;AVGPOST=0.9984;RSQ=0.9816;ERATE=0.0002;THETA=0.0013;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134172774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9996;RSQ=0.9838;ERATE=0.0002;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134172797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8376;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134172822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0295;AVGPOST=0.9993;RSQ=0.9908;ERATE=0.0003;THETA=0.0019;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134172830 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0282;AVGPOST=0.9985;RSQ=0.9795;ERATE=0.0004;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134172901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9105;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134173049 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.8937;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134173212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0240;AVGPOST=0.9992;RSQ=0.9834;ERATE=0.0003;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134173260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9988;RSQ=0.3945;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134173261 . CA C 43 PASS INDEL;BAVGPOST=0.978;BRSQ=0.360;LDAF=0.0196;AVGPOST=0.9822;RSQ=0.6172;ERATE=0.0011;THETA=0.0014;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134173262 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134173315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0238;AVGPOST=0.9976;RSQ=0.9664;ERATE=0.0004;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134173321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0282;AVGPOST=0.9926;RSQ=0.8937;ERATE=0.0007;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134173325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0185;AVGPOST=0.9827;RSQ=0.6336;ERATE=0.0021;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134173363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0061;AVGPOST=0.9932;RSQ=0.5728;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134173394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0071;AVGPOST=0.9936;RSQ=0.6639;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134173418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.747;LDAF=0.0066;AVGPOST=0.9937;RSQ=0.6401;ERATE=0.0005;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134173454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.926;LDAF=0.0282;AVGPOST=0.9930;RSQ=0.9213;ERATE=0.0006;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134173463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5528;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134173501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0084;AVGPOST=0.9983;RSQ=0.9116;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134173571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0090;AVGPOST=0.9973;RSQ=0.8834;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134173780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8135;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134173909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.369;LDAF=0.0052;AVGPOST=0.9909;RSQ=0.2980;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134173960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.759;BRSQ=0.353;LDAF=0.2386;AVGPOST=0.8056;RSQ=0.5924;ERATE=0.0165;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 134173994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.724;BRSQ=0.538;LDAF=0.6225;AVGPOST=0.7334;RSQ=0.5750;ERATE=0.0316;THETA=0.0004;AC=1424;AN=2184 GT:DS:GL:BD 0.65201467 1 1 134174002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.922;LDAF=0.0308;AVGPOST=0.9871;RSQ=0.8261;ERATE=0.0009;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134174044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.667;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9064;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134174134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.901;LDAF=0.2640;AVGPOST=0.9618;RSQ=0.9288;ERATE=0.0077;THETA=0.0003;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 134174165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0052;AVGPOST=0.9936;RSQ=0.5216;ERATE=0.0009;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134174232 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.885;LDAF=0.4097;AVGPOST=0.9053;RSQ=0.8577;ERATE=0.0141;THETA=0.0003;AC=912;AN=2184 GT:DS:GL:BD 0.41758242 0 1 134174302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134174366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5329;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134174392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0072;AVGPOST=0.9980;RSQ=0.8801;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134174419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.929;LDAF=0.0849;AVGPOST=0.9957;RSQ=0.9792;ERATE=0.0004;THETA=0.0004;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 134174466 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.718;LDAF=0.0204;AVGPOST=0.9841;RSQ=0.7043;ERATE=0.0011;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134174628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0041;AVGPOST=0.9965;RSQ=0.6776;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134174659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0090;AVGPOST=0.9979;RSQ=0.8906;ERATE=0.0004;THETA=0.0016;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134174662 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6512;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134174878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6418;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134174897 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0039;AVGPOST=0.9953;RSQ=0.5606;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134175179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134175207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7340;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134175208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134175210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5682;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134175216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.1098;AVGPOST=0.9945;RSQ=0.9778;ERATE=0.0009;THETA=0.0017;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 134175322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4612;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134175336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6340;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134175419 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8136;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134175436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9972;RSQ=0.8788;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134175463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.817;LDAF=0.0621;AVGPOST=0.9936;RSQ=0.9574;ERATE=0.0005;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 134175498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1053;AVGPOST=0.9973;RSQ=0.9891;ERATE=0.0004;THETA=0.0006;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134175532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134175737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0104;AVGPOST=0.9970;RSQ=0.8861;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134175810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0041;AVGPOST=0.9950;RSQ=0.5756;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134176207 . TTC T 12512 PASS INDEL;BAVGPOST=0.981;BRSQ=0.242;LDAF=0.9298;AVGPOST=0.9006;RSQ=0.4023;ERATE=0.0088;THETA=0.0004;AC=2089;AN=2184 GT:DS:GL:BD 0.95650184 1 1 134176365 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.4713;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134176568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134177060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9907;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134177079 . G GA 130 PASS INDEL;BAVGPOST=0.990;BRSQ=0.578;LDAF=0.0270;AVGPOST=0.9661;RSQ=0.5047;ERATE=0.0077;THETA=0.0022;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134177278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5837;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134177362 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9167;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134177497 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4606;AVGPOST=0.9947;RSQ=0.9920;ERATE=0.0015;THETA=0.0004;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 134177523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2693;AVGPOST=0.9972;RSQ=0.9947;ERATE=0.0004;THETA=0.0003;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134177552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9502;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134177598 . CTG C 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134177678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7158;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134177695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7040;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134177699 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8378;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134177703 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0490;AVGPOST=0.9975;RSQ=0.9795;ERATE=0.0003;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 134177818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134177821 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5383;AVGPOST=0.9986;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=1177;AN=2184 GT:DS:GL:BD 0.53891939 1 1 134177823 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134177933 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7268;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134177946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0059;AVGPOST=0.9944;RSQ=0.6636;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134177983 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9790;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134178031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0103;AVGPOST=0.9990;RSQ=0.9553;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134178037 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134178157 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134178220 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134178221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134178222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134178224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134178267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134178310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0362;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134178442 rs59167566 CA C 49124 PASS INDEL;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.4542;AVGPOST=0.9916;RSQ=0.9877;ERATE=0.0021;THETA=0.0003;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 134178467 . AT A 378 PASS INDEL;BAVGPOST=0.858;BRSQ=0.482;LDAF=0.1354;AVGPOST=0.8691;RSQ=0.6075;ERATE=0.0148;THETA=0.0003;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134178472 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8748;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134178490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134178518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134178736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7761;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134178819 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0029;AVGPOST=0.9962;RSQ=0.5054;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134178924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0288;AVGPOST=0.9995;RSQ=0.9908;ERATE=0.0004;THETA=0.0066;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134178944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7598;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134179034 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1148;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 134179044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6750;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134179085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.820;LDAF=0.0147;AVGPOST=0.9945;RSQ=0.8362;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134179115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.8001;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134179125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9341;ERATE=0.0004;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134179131 . ATT A 203 PASS INDEL;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5485;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134179143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0004;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134179200 . GT G 485 PASS INDEL;BAVGPOST=0.994;BRSQ=0.653;LDAF=0.0118;AVGPOST=0.9901;RSQ=0.6796;ERATE=0.0009;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134179233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0022;AVGPOST=0.9971;RSQ=0.4672;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134179280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134179305 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3051;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 134179314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4324;AVGPOST=0.9967;RSQ=0.9946;ERATE=0.0006;THETA=0.0006;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 134179345 . AC A 384 PASS INDEL;BAVGPOST=0.908;BRSQ=0.511;LDAF=0.0834;AVGPOST=0.9165;RSQ=0.6000;ERATE=0.0066;THETA=0.0028;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134179374 . AC A 457 PASS INDEL;BAVGPOST=0.878;BRSQ=0.455;LDAF=0.1398;AVGPOST=0.8616;RSQ=0.5722;ERATE=0.0130;THETA=0.0012;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 134179382 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.967;LDAF=0.1258;AVGPOST=0.9936;RSQ=0.9789;ERATE=0.0014;THETA=0.0004;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134179383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134179389 . A AC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134179437 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0168;AVGPOST=0.9994;RSQ=0.9838;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134179439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5839;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134179457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1146;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0004;THETA=0.0007;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 134179458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134179498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134179524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1271;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134179594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6806;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134179756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134179787 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4343;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134179789 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6121;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134179800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8822;AVGPOST=0.9958;RSQ=0.9882;ERATE=0.0003;THETA=0.0017;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 134179899 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.963;LDAF=0.1196;AVGPOST=0.9942;RSQ=0.9795;ERATE=0.0004;THETA=0.0006;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 134179934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.985;LDAF=0.4268;AVGPOST=0.9937;RSQ=0.9908;ERATE=0.0005;THETA=0.0005;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 134179935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6573;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134180001 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134180069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9332;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134180216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7515;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134180231 rs66516063 CAT C 33957 PASS INDEL;BAVGPOST=0.906;BRSQ=0.745;LDAF=0.7709;AVGPOST=0.8431;RSQ=0.6798;ERATE=0.0317;THETA=0.0013;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 134180323 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0173;AVGPOST=0.9983;RSQ=0.9572;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134180396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0056;AVGPOST=0.9978;RSQ=0.8232;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134180410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4616;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134180411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4348;AVGPOST=0.9969;RSQ=0.9954;ERATE=0.0005;THETA=0.0003;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134180525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9332;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134180550 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4009;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134180745 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1272;AVGPOST=0.9968;RSQ=0.9894;ERATE=0.0004;THETA=0.0006;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 134180748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3062;AVGPOST=0.9955;RSQ=0.9922;ERATE=0.0010;THETA=0.0005;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 134180755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1268;AVGPOST=0.9986;RSQ=0.9953;ERATE=0.0004;THETA=0.0002;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134180774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4396;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134180775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.826;LDAF=0.0250;AVGPOST=0.9891;RSQ=0.8444;ERATE=0.0006;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134180891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7094;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134180984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.912;LDAF=0.1101;AVGPOST=0.9759;RSQ=0.9108;ERATE=0.0007;THETA=0.0006;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 134181004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0049;AVGPOST=0.9969;RSQ=0.7353;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134181022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7404;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134181049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134181145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4337;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0007;THETA=0.0004;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134181148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7089;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4314;AVGPOST=0.9929;RSQ=0.9895;ERATE=0.0013;THETA=0.0006;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 134181263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181287 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3070;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 134181288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9623;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134181312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134181332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.8440;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134181405 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5127;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3070;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0005;THETA=0.0006;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 134181560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5721;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134181580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7328;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134181725 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181731 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181816 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0305;AVGPOST=0.9986;RSQ=0.9781;ERATE=0.0004;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134181844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4343;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0005;THETA=0.0005;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134181915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4545;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181961 . TA T 22 PASS INDEL;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134181979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0067;AVGPOST=0.9995;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134181986 . T TA 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.7949;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134182000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134182008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.8176;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134182086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4335;AVGPOST=0.9868;RSQ=0.9807;ERATE=0.0019;THETA=0.0004;AC=947;AN=2184 GT:DS:GL:BD 0.43360806 0 1 134182209 rs3042755 ATGCC A 26612 PASS INDEL;BAVGPOST=0.964;BRSQ=0.935;LDAF=0.4209;AVGPOST=0.9704;RSQ=0.9575;ERATE=0.0030;THETA=0.0011;AC=931;AN=2184 GT:DS:GL:BD 0.42628205 0 1 134182282 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.4342;AVGPOST=0.9955;RSQ=0.9931;ERATE=0.0005;THETA=0.0006;AC=950;AN=2184 GT:DS:GL:BD 0.43498167 0 1 134182339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0176;AVGPOST=0.9982;RSQ=0.9572;ERATE=0.0005;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134182359 . CAAAG C 124 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8518;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134182686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4701;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134182690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4343;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0160;AVGPOST=0.9987;RSQ=0.9705;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134182721 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4344;AVGPOST=0.9961;RSQ=0.9939;ERATE=0.0007;THETA=0.0006;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182766 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4344;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0005;THETA=0.0012;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134182819 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4342;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7810;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134182831 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4332;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134182855 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3074;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 134182868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.4344;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0006;THETA=0.0006;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0307;AVGPOST=0.9979;RSQ=0.9690;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134182917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.4343;AVGPOST=0.9962;RSQ=0.9938;ERATE=0.0004;THETA=0.0010;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134182922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4336;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 134183008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134183215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4343;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 134183313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134183398 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4334;AVGPOST=0.9975;RSQ=0.9964;ERATE=0.0007;THETA=0.0005;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 134183422 . GA G 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8494;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134183433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.935;LDAF=0.0226;AVGPOST=0.9952;RSQ=0.9182;ERATE=0.0003;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134183498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0090;AVGPOST=0.9957;RSQ=0.8346;ERATE=0.0005;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134183568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.4279;AVGPOST=0.9879;RSQ=0.9829;ERATE=0.0018;THETA=0.0100;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 134183645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0382;AVGPOST=0.9974;RSQ=0.9745;ERATE=0.0005;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134183722 . G GA 429 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9598;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134183747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9453;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134183776 . TACTCAAGTGTCC T 1984 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0102;AVGPOST=0.9954;RSQ=0.8291;ERATE=0.0007;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134183856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8085;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134184038 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3372;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134184166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5781;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134184202 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4643;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134184248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3684;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134184265 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3369;AVGPOST=0.9954;RSQ=0.9912;ERATE=0.0005;THETA=0.0010;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 134184347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9519;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134184470 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134184495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134184558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134184581 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8793;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134184584 . T TG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7290;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134184651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8856;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134184702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6903;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134184721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134184975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4012;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134185012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8629;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134185068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9739;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134185173 . T TC 43 PASS INDEL;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9328;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134185202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9279;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134185281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6088;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134185456 . CAAATA C 1190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0065;AVGPOST=0.9970;RSQ=0.8135;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134185561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134185563 . C CAACATTTCT 963 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0041;AVGPOST=0.9969;RSQ=0.7238;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134185579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1803;AVGPOST=0.9978;RSQ=0.9931;ERATE=0.0004;THETA=0.0004;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 134185598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8426;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134185610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134185729 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1802;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0004;THETA=0.0005;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 134185748 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134185820 . G GTTTC 693 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0061;AVGPOST=0.9969;RSQ=0.8041;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134185859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7510;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134185883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6693;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134185903 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6410;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134185975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3356;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134186003 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9353;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134186055 . CTCTG C 2272 PASS INDEL;BAVGPOST=0.891;BRSQ=0.562;LDAF=0.2093;AVGPOST=0.7981;RSQ=0.4638;ERATE=0.0527;THETA=0.0003;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 134186108 . CTG C 3004 PASS INDEL;BAVGPOST=0.855;BRSQ=0.531;LDAF=0.2625;AVGPOST=0.7621;RSQ=0.4536;ERATE=0.0771;THETA=0.0006;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 134186110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8699;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134186159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0234;AVGPOST=0.9980;RSQ=0.9653;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134186168 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6787;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134186237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134186253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0322;AVGPOST=0.9986;RSQ=0.9809;ERATE=0.0003;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134186401 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134186429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0218;AVGPOST=0.9981;RSQ=0.9613;ERATE=0.0005;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134186442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9596;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134186444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7830;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134186471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7407;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134186482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4396;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134186497 . TAA T 24 PASS INDEL;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5378;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134186563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9252;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134186743 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134186767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5158;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134186791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9980;RSQ=0.3928;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134186797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5688;AVGPOST=0.9899;RSQ=0.9837;ERATE=0.0013;THETA=0.0004;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 134186839 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4276;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134186886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134187178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9265;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134187302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134187308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.9994;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0006;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 134187387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5716;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134187426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134187476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0927;AVGPOST=0.9963;RSQ=0.9800;ERATE=0.0004;THETA=0.0007;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 134187624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7339;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134187625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0041;AVGPOST=0.9972;RSQ=0.7368;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134187633 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5831;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134187679 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0114;AVGPOST=0.9974;RSQ=0.9203;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134187743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7546;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134187805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3006;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134187912 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0034;AVGPOST=0.9953;RSQ=0.4956;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134187990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.7029;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134188007 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5685;AVGPOST=0.9918;RSQ=0.9875;ERATE=0.0007;THETA=0.0004;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 134188009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9194;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134188110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6018;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134188127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8861;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134188135 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4915;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134188188 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134188213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.789;LDAF=0.0073;AVGPOST=0.9980;RSQ=0.8756;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134188256 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1601;AVGPOST=0.9936;RSQ=0.9814;ERATE=0.0005;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 134188268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9119;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134188273 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9452;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134188335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9114;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134188375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134188480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9176;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134188696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.696;LDAF=0.0500;AVGPOST=0.9614;RSQ=0.6727;ERATE=0.0266;THETA=0.0002;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134189000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134189116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1405;AVGPOST=0.9981;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 134189286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5591;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134189289 . CACTT C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4346;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134189782 . C CT 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6009;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134189895 rs3838483 A AGTTTT 439 PASS INDEL;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0053;AVGPOST=0.9944;RSQ=0.5883;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134189901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8510;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134189946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.818;LDAF=0.0215;AVGPOST=0.9924;RSQ=0.8789;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134190033 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8438;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134190082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9885;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134190230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0375;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134190383 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134190485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134190550 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7593;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134190756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0092;AVGPOST=0.9993;RSQ=0.9670;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134190765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5142;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134190945 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9063;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134191030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134191034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134191118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0411;AVGPOST=0.9989;RSQ=0.9905;ERATE=0.0003;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134191266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7279;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134191400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6253;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134191416 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134191542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134191633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1712;AVGPOST=0.9975;RSQ=0.9924;ERATE=0.0004;THETA=0.0008;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 134191686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9629;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134191705 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6444;AVGPOST=0.9969;RSQ=0.9944;ERATE=0.0004;THETA=0.0008;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 134191747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0282;AVGPOST=0.9993;RSQ=0.9878;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134191901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3125;ERATE=0.0008;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134191935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8171;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134191940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0061;AVGPOST=0.9968;RSQ=0.7914;ERATE=0.0006;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134192019 . C CT 344 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134192156 rs72198115 T TA 2850 PASS INDEL;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0464;AVGPOST=0.9831;RSQ=0.8641;ERATE=0.0033;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134192170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134192200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6544;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134192216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134192233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134192353 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0056;AVGPOST=0.9985;RSQ=0.9042;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134192373 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7362;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134192404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0096;AVGPOST=0.9994;RSQ=0.9736;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134192478 . G GA 28 PASS INDEL;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0039;AVGPOST=0.9952;RSQ=0.5136;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134192525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134192526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8311;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134192541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0431;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0004;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134192593 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134192594 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134192598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0340;AVGPOST=0.9976;RSQ=0.9800;ERATE=0.0005;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134192633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.8005;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134192686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7934;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134192756 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134192799 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134192945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134192970 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134192980 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6338;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134193071 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134193091 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0362;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0011;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134193166 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0363;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134193215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0374;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134193251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.5229;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134193320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0340;AVGPOST=0.9994;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134193343 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134193414 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4397;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=962;AN=2184 GT:DS:GL:BD 0.44047618 0 1 134193460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1919;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 134193479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9220;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134193534 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134193539 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5165;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134193564 . GC G 315 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5003;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134193628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5488;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134193724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9095;AVGPOST=0.9989;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=1987;AN=2184 GT:DS:GL:BD 0.90979856 1 1 134193733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9095;AVGPOST=0.9989;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=1987;AN=2184 GT:DS:GL:BD 0.90979856 1 1 134193816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1918;AVGPOST=0.9973;RSQ=0.9930;ERATE=0.0006;THETA=0.0017;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 134193821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134193926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0148;AVGPOST=0.9987;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134193932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8154;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134193985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.9069;AVGPOST=0.9953;RSQ=0.9769;ERATE=0.0009;THETA=0.0006;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 134194175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5112;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134194176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.9612;AVGPOST=0.9971;RSQ=0.9752;ERATE=0.0005;THETA=0.0003;AC=2101;AN=2184 GT:DS:GL:BD 0.96199632 1 1 134194234 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8281;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134194251 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134194260 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.9050;AVGPOST=0.9891;RSQ=0.9526;ERATE=0.0019;THETA=0.0014;AC=1982;AN=2184 GT:DS:GL:BD 0.90750915 1 1 134194276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.9088;AVGPOST=0.9974;RSQ=0.9870;ERATE=0.0007;THETA=0.0003;AC=1987;AN=2184 GT:DS:GL:BD 0.90979856 1 1 134194350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9084;AVGPOST=0.9971;RSQ=0.9870;ERATE=0.0005;THETA=0.0003;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 134194361 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9559;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134194391 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134194419 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134194480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9087;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=1984;AN=2184 GT:DS:GL:BD 0.90842491 1 1 134194536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2425;AVGPOST=0.9977;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=528;AN=2184 GT:DS:GL:BD 0.24175824 0 1 134194555 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9099;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=1987;AN=2184 GT:DS:GL:BD 0.90979856 1 1 134194573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.9964;AVGPOST=0.9991;RSQ=0.9073;ERATE=0.0004;THETA=0.0036;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 134194591 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.2835;AVGPOST=0.9948;RSQ=0.9916;ERATE=0.0007;THETA=0.0006;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 134194759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134194812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0520;AVGPOST=0.9983;RSQ=0.9870;ERATE=0.0004;THETA=0.0065;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134194935 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9413;ERATE=0.0003;THETA=0.0037;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134195079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0146;AVGPOST=0.9997;RSQ=0.9922;ERATE=0.0003;THETA=0.0011;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134195082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0496;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134195147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0004;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134195173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134195206 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9862;ERATE=0.0003;THETA=0.0040;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134195239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.7611;AVGPOST=0.9910;RSQ=0.9798;ERATE=0.0035;THETA=0.0001;AC=1667;AN=2184 GT:DS:GL:BD 0.76327837 1 1 134195268 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6569;ERATE=0.0003;THETA=0.0130;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134195328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0277;AVGPOST=0.9992;RSQ=0.9856;ERATE=0.0003;THETA=0.0043;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134195341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134195501 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7833;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 134195538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6177;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0006;THETA=0.0019;AC=1349;AN=2184 GT:DS:GL:BD 0.61767399 1 1 134195606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134195727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.0926;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134195731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8241;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134195846 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134195863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7469;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134195866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6155;AVGPOST=0.9965;RSQ=0.9939;ERATE=0.0010;THETA=0.0018;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 134195896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0037;AVGPOST=0.9959;RSQ=0.6179;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134196153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1210;AVGPOST=0.9986;RSQ=0.9948;ERATE=0.0003;THETA=0.0007;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 134196191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6548;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0005;THETA=0.0006;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 134196220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0241;AVGPOST=0.9994;RSQ=0.9888;ERATE=0.0003;THETA=0.0015;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134196221 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6545;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0005;THETA=0.0017;AC=1428;AN=2184 GT:DS:GL:BD 0.65384614 1 1 134196258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7610;AVGPOST=0.9971;RSQ=0.9932;ERATE=0.0007;THETA=0.0003;AC=1662;AN=2184 GT:DS:GL:BD 0.76098901 1 1 134196339 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134196349 . C CAA 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5201;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134196390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6343;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134196562 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134196578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.8971;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134196583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9660;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134196608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0087;AVGPOST=0.9991;RSQ=0.9564;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134196687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0819;AVGPOST=0.9988;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 134196694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134196781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1764;AVGPOST=0.9947;RSQ=0.9844;ERATE=0.0005;THETA=0.0005;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 134196841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0567;AVGPOST=0.9997;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134196889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0065;AVGPOST=0.9979;RSQ=0.8624;ERATE=0.0005;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134196917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134196984 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9301;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134196991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7620;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0005;THETA=0.0002;AC=1665;AN=2184 GT:DS:GL:BD 0.76236266 1 1 134197061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134197063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7701;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134197150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7615;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7625;AVGPOST=0.9974;RSQ=0.9942;ERATE=0.0008;THETA=0.0002;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7617;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5340;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 134197410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134197479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134197489 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7611;AVGPOST=0.9979;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=1663;AN=2184 GT:DS:GL:BD 0.76144689 1 1 134197550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7617;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9175;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134197675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5960;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134197687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7202;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134197790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7617;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0030;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134197895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8043;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134197913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7616;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7616;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0004;THETA=0.0007;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134197983 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134197986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7293;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134198026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8082;ERATE=0.0003;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134198151 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134198173 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4835;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198276 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198312 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0106;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0408;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0019;THETA=0.0056;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134198400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0117;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134198446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198597 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0086;AVGPOST=0.9995;RSQ=0.9757;ERATE=0.0006;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134198637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134198638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134198668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134198717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134198754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0050;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134198779 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0003;THETA=0.0026;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134198976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134198994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134199142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0028;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134199250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134199326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0004;THETA=0.0008;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134199430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199495 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0051;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134199541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8619;ERATE=0.0009;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134199653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134199683 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9768;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134199756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8880;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134199763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9066;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134199846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9690;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134199860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0090;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134200059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0005;THETA=0.0053;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134200094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9592;ERATE=0.0003;THETA=0.0038;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134200156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134200216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134200234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134200236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134200240 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134200378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134200412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9811;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0019;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 134200540 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0223;AVGPOST=0.9969;RSQ=0.9472;ERATE=0.0007;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134200738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.964;LDAF=0.2906;AVGPOST=0.9718;RSQ=0.9533;ERATE=0.0008;THETA=0.0030;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 134200771 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134200788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4504;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134200896 . TC T 143 PASS INDEL;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3375;ERATE=0.0008;THETA=0.0090;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134200922 rs111316439 C CG 1156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0075;AVGPOST=0.9993;RSQ=0.9564;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134200940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0144;AVGPOST=0.9984;RSQ=0.9545;ERATE=0.0003;THETA=0.0018;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134201020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.4458;AVGPOST=0.9756;RSQ=0.9632;ERATE=0.0018;THETA=0.0007;AC=971;AN=2184 GT:DS:GL:BD 0.44459707 0 1 134201316 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0190;AVGPOST=0.9993;RSQ=0.9819;ERATE=0.0004;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134201338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134201400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134201405 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.831;LDAF=0.0178;AVGPOST=0.9914;RSQ=0.8286;ERATE=0.0007;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134201426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134201655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134201710 rs68104325 T TTCCTAACC 26043 PASS INDEL;BAVGPOST=0.980;BRSQ=0.904;LDAF=0.1131;AVGPOST=0.9931;RSQ=0.9719;ERATE=0.0007;THETA=0.0018;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 134201940 rs61301493 TA T 2915 PASS INDEL;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0276;AVGPOST=0.9964;RSQ=0.9500;ERATE=0.0005;THETA=0.0013;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134202137 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134202178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9765;ERATE=0.0004;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134202234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5168;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134202417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.8079;AVGPOST=0.9903;RSQ=0.9804;ERATE=0.0006;THETA=0.0007;AC=1760;AN=2184 GT:DS:GL:BD 0.80586082 1 1 134202433 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0127;AVGPOST=0.9964;RSQ=0.8851;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134202525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8912;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134202567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134202572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134202599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0118;AVGPOST=0.9980;RSQ=0.9338;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134202623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0107;AVGPOST=0.9953;RSQ=0.8148;ERATE=0.0007;THETA=0.0081;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134202646 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8513;ERATE=0.0005;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134202758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.753;LDAF=0.0053;AVGPOST=0.9958;RSQ=0.7351;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134202778 . C CA 561 PASS INDEL;BAVGPOST=0.867;BRSQ=0.351;LDAF=0.1820;AVGPOST=0.7775;RSQ=0.3470;ERATE=0.0460;THETA=0.0006;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 134202884 . CTG C 74 PASS INDEL;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6506;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134203218 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134203603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134203636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7862;AVGPOST=0.9958;RSQ=0.9908;ERATE=0.0004;THETA=0.0006;AC=1717;AN=2184 GT:DS:GL:BD 0.78617215 1 1 134203868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8836;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134203914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.6107;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134203932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8333;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134203933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8773;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134204132 rs36087058 G GA 56486 PASS INDEL;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5415;AVGPOST=0.9961;RSQ=0.9942;ERATE=0.0007;THETA=0.0002;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 134204293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0023;AVGPOST=0.9969;RSQ=0.4671;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134204418 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9270;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134204455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134204618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3549;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 134204670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134204749 . TTTTG T 27 PASS INDEL;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5549;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134204753 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5429;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0005;THETA=0.0002;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 134204905 . CACTA C 303 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6219;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134205015 . C CT 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134205039 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5894;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134205059 . C CT 22 PASS INDEL;BAVGPOST=0.989;BRSQ=0.517;LDAF=0.0268;AVGPOST=0.9642;RSQ=0.4608;ERATE=0.0097;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134205150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6560;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134205201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5430;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 134205207 . ATGTT A 1291 PASS INDEL;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0080;AVGPOST=0.9982;RSQ=0.9003;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134205220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0336;AVGPOST=0.9992;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134205354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6688;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134205364 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9339;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134205374 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6055;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134205638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0255;AVGPOST=0.9967;RSQ=0.9485;ERATE=0.0004;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134205693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134206048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134206180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134206203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134206420 . AC A 958 PASS INDEL;BAVGPOST=0.992;BRSQ=0.755;LDAF=0.0134;AVGPOST=0.9964;RSQ=0.8904;ERATE=0.0004;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134206591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5595;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134206800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134206809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134206810 . CT C 536 PASS INDEL;BAVGPOST=0.996;BRSQ=0.726;LDAF=0.0061;AVGPOST=0.9960;RSQ=0.7360;ERATE=0.0006;THETA=0.0025;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134207039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1038;AVGPOST=0.9993;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 134207080 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134207283 . CT C 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.542;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6805;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134207328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5304;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134207339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.923;LDAF=0.0324;AVGPOST=0.9949;RSQ=0.9432;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134207570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134207674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134207697 . AAAG A 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5572;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134207890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134207909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8452;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134208135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134208149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134208204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5685;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134208311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134208559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9468;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134208601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8820;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134208631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0093;AVGPOST=0.9993;RSQ=0.9686;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134208684 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.5223;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134208754 . C CT 4544 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0326;AVGPOST=0.9974;RSQ=0.9698;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134208754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7583;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134208977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134209108 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4699;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134209171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6301;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134209207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134209213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1028;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0069;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 134209218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134209240 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134209359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9851;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134209443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6643;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134209480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9745;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134209501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7219;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134209552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1943;AVGPOST=0.9975;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 134209555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0115;AVGPOST=0.9991;RSQ=0.9764;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134209612 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134209659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134209776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134209923 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134209931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0137;AVGPOST=0.9992;RSQ=0.9764;ERATE=0.0003;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134209971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134210011 . T TC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5404;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134210012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5769;AVGPOST=0.9966;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 134210027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7402;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134210180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7749;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134210211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134210237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134210259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134210441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9058;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134210547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134210558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6729;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134210574 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1928;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 134210611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9066;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134210651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134210752 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1154;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 134210876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0075;AVGPOST=0.9983;RSQ=0.9170;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134210882 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1160;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 134210895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1157;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 134210927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1149;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 134210946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134210948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6280;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134211067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134211125 rs34660539 G GA 25 PASS INDEL;BAVGPOST=0.990;BRSQ=0.532;LDAF=0.0210;AVGPOST=0.9755;RSQ=0.5241;ERATE=0.0066;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134211171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1158;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 134211204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0655;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 134211416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134211511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134211523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134211599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0495;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134211603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5776;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 134211660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134211665 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9634;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134211682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134211724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134211871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5773;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0005;THETA=0.0006;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 134211879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 134211884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0105;AVGPOST=0.9997;RSQ=0.9856;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134211956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0476;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 134212002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8872;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134212108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0656;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 134212120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0505;AVGPOST=0.9995;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134212144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134212180 . CAAG C 1366 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134212197 . TAAAC T 5951 PASS INDEL;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0325;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134212240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134212385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7413;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134212422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 134212454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.8060;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134212537 . TGCA T 636 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134212582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134212621 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134212695 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134212709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3464;AVGPOST=0.9966;RSQ=0.9933;ERATE=0.0014;THETA=0.0004;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 134212822 . ACT A 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6783;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134212831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5784;AVGPOST=0.9970;RSQ=0.9955;ERATE=0.0008;THETA=0.0003;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 134213143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134213242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134213332 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9002;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134213333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4489;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0006;THETA=0.0005;AC=981;AN=2184 GT:DS:GL:BD 0.44917583 0 1 134213502 . ACT A 38 PASS INDEL;BAVGPOST=0.997;BRSQ=0.744;LDAF=0.0100;AVGPOST=0.9923;RSQ=0.6896;ERATE=0.0028;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134213626 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0228;AVGPOST=0.9990;RSQ=0.9849;ERATE=0.0003;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134213664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3677;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134213705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0328;AVGPOST=0.9991;RSQ=0.9879;ERATE=0.0004;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134213744 . CTG C 194 PASS INDEL;BAVGPOST=0.998;BRSQ=0.477;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7137;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134213779 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4621;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134213845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6429;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134213935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0168;AVGPOST=0.9990;RSQ=0.9764;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134213985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4991;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134213996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134214000 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134214062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0264;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134214095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9784;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134214111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9524;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134214112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134214165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134214168 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134214227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9642;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134214244 . CTCTT C 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5709;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134214314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0327;AVGPOST=0.9993;RSQ=0.9906;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134214352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2859;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0004;THETA=0.0009;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 134214365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134214404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5494;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134214570 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7647;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134214586 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0103;AVGPOST=0.9983;RSQ=0.9358;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134214601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6351;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134214852 . AG A 221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9295;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134214924 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6352;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134214927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8720;ERATE=0.0004;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134214970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9501;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134215045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5069;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134215076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9260;AVGPOST=0.9981;RSQ=0.9880;ERATE=0.0003;THETA=0.0006;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 134215100 . A ACCT 136 PASS INDEL;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6581;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134215138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134215188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0787;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 134215214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.864;LDAF=0.0082;AVGPOST=0.9963;RSQ=0.8416;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134215366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7438;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134215392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134215393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134215408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8859;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134215414 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9993;RSQ=0.9917;ERATE=0.0004;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134215485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0242;AVGPOST=0.9979;RSQ=0.9665;ERATE=0.0004;THETA=0.0016;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134215541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134215549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6474;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134215596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134215751 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0387;AVGPOST=0.9993;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134215782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134215799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0236;AVGPOST=0.9994;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134215819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0178;AVGPOST=0.9978;RSQ=0.9528;ERATE=0.0004;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134215858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0051;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134215902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.8962;ERATE=0.0003;THETA=0.0026;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134216040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134216104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6827;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134216105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7603;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134216204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7082;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134216313 . CG C 2471 PASS INDEL;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0303;AVGPOST=0.9971;RSQ=0.9584;ERATE=0.0005;THETA=0.0025;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134216444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6913;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134216514 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.8978;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134216532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0295;AVGPOST=0.9990;RSQ=0.9860;ERATE=0.0003;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134216540 . T TA 2364 PASS INDEL;BAVGPOST=0.984;BRSQ=0.865;LDAF=0.0496;AVGPOST=0.9856;RSQ=0.8920;ERATE=0.0007;THETA=0.0008;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 134216605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7829;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134216646 . T TA 5800 PASS INDEL;BAVGPOST=0.973;BRSQ=0.838;LDAF=0.0972;AVGPOST=0.9434;RSQ=0.7550;ERATE=0.0193;THETA=0.0016;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 134216716 . AAC A 559 PASS INDEL;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8669;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134216724 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134216810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8774;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134216832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9208;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134216876 . T TA 56 PASS INDEL;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0029;AVGPOST=0.9964;RSQ=0.5206;ERATE=0.0006;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134216885 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8497;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134217107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9991;RSQ=0.9562;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134217122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0163;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0040;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134217243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8688;ERATE=0.0016;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134217246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0287;AVGPOST=0.9993;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134217356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9449;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134217385 . G GGCAT 676 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8562;ERATE=0.0006;THETA=0.0073;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134217454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134217540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134217550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0053;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134217588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0174;AVGPOST=0.9996;RSQ=0.9922;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134217739 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134217756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134217836 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134218150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7619;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134218192 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9125;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134218193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134218230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4278;AVGPOST=0.9963;RSQ=0.9945;ERATE=0.0007;THETA=0.0009;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 134218369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134218411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5858;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134218423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134218434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9674;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134218453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134218479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9252;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134218530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4063;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134218533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134218599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0169;AVGPOST=0.9984;RSQ=0.9637;ERATE=0.0003;THETA=0.0014;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134218625 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3343;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0005;THETA=0.0008;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 134218708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3384;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 134218819 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6352;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134218887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134218897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0432;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134218981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9407;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134219020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6745;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134219032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134219105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0031;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134219144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134219283 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134219331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134219384 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134219406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7908;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134219569 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7038;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134219675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134219744 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134220019 . CTTG C 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4374;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220073 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220188 . CAAT C 377 PASS INDEL;BAVGPOST=0.994;BRSQ=0.546;LDAF=0.0046;AVGPOST=0.9951;RSQ=0.5403;ERATE=0.0011;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134220210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1811;AVGPOST=0.9941;RSQ=0.9862;ERATE=0.0004;THETA=0.0009;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 134220212 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7994;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134220299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.7002;AVGPOST=0.9932;RSQ=0.9904;ERATE=0.0005;THETA=0.0022;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 134220310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0431;AVGPOST=0.9991;RSQ=0.9897;ERATE=0.0004;THETA=0.0005;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134220323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5201;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220413 . T TC 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220437 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134220517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6337;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134220524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134220560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8402;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134220562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6746;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134220696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0111;AVGPOST=0.9986;RSQ=0.9442;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134220782 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6862;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134220820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9994;RSQ=0.9646;ERATE=0.0003;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134220941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134220945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.1544;AVGPOST=0.9927;RSQ=0.9785;ERATE=0.0006;THETA=0.0003;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 134221028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8317;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134221094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5374;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134221229 . T TCCC 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7944;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134221258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134221581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134221583 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134221584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0051;AVGPOST=0.9978;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134221598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7381;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134221666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9182;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134221691 . G GA 164 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8764;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134221714 . C CCTTTT 194 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134221764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134221810 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134221838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.877;LDAF=0.0132;AVGPOST=0.9971;RSQ=0.9203;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134222082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1314;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0003;THETA=0.0002;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 134222095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8828;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134222143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134222176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9199;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134222249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0431;AVGPOST=0.9997;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134222284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134222308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3767;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 134222344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134222363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134222540 . C CA 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0046;AVGPOST=0.9948;RSQ=0.5619;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134222736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6159;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134222808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0059;AVGPOST=0.9978;RSQ=0.8420;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134222957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8188;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134222976 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134222977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6438;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134223031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7477;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134223116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134223229 . G GA 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6908;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134223242 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3786;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0004;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134223275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0429;AVGPOST=0.9994;RSQ=0.9930;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134223370 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4342;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134223438 . TC T 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3736;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134223465 . GAT G 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4328;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134223571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6813;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134223595 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.638;LDAF=0.0153;AVGPOST=0.9899;RSQ=0.7429;ERATE=0.0007;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134223757 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.7385;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134223758 . AGC A 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4695;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134223790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5722;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134223806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0285;AVGPOST=0.9993;RSQ=0.9890;ERATE=0.0004;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134223836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9888;ERATE=0.0002;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134224029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.924;LDAF=0.0182;AVGPOST=0.9991;RSQ=0.9791;ERATE=0.0004;THETA=0.0011;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134224199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0130;AVGPOST=0.9957;RSQ=0.8696;ERATE=0.0010;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134224271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8120;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134224435 . G GA 188 PASS INDEL;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7756;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134224464 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0189;AVGPOST=0.9997;RSQ=0.9928;ERATE=0.0003;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134224578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6433;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134224688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134224689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9339;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134224786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7809;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134224834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8918;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134224963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8781;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134225037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0002;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134225157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134225174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9872;ERATE=0.0002;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134225292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7010;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134225373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9876;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134225441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9810;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134225511 . CAGAA C 4790 PASS INDEL;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0235;AVGPOST=0.9993;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134225536 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9989;RSQ=0.9801;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134225607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0002;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134226054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6422;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134226055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7839;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134226093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134226223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134226280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134226359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134226361 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0002;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134226541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0244;AVGPOST=0.9987;RSQ=0.9772;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134226767 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5191;AVGPOST=0.9951;RSQ=0.9918;ERATE=0.0004;THETA=0.0006;AC=1133;AN=2184 GT:DS:GL:BD 0.51877290 1 1 134226820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8043;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134226979 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0102;AVGPOST=0.9992;RSQ=0.9684;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134226984 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.9006;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134227080 . T TA 35 PASS INDEL;BAVGPOST=0.994;BRSQ=0.549;LDAF=0.0141;AVGPOST=0.9831;RSQ=0.5370;ERATE=0.0024;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134227123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134227190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134227233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0002;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134227247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134227411 . C CTTA 3198 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0197;AVGPOST=0.9990;RSQ=0.9787;ERATE=0.0005;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134227429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134227434 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134227565 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.6069;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134227770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134227862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134228097 . AT A 41905 PASS INDEL;BAVGPOST=0.997;BRSQ=0.516;LDAF=0.9958;AVGPOST=0.9950;RSQ=0.5401;ERATE=0.0007;THETA=0.0003;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 134228097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134228112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134228240 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134228314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134228390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0292;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134228412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134228578 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9805;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134228607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1330;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0002;THETA=0.0016;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 134228681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.963;LDAF=0.0630;AVGPOST=0.9944;RSQ=0.9663;ERATE=0.0005;THETA=0.0006;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134228903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.964;LDAF=0.0628;AVGPOST=0.9964;RSQ=0.9778;ERATE=0.0003;THETA=0.0008;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134228904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134228993 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134229005 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134229201 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9331;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134229347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9329;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134229566 . AG A 163 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9128;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134229692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134229712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6166;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134229780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134230172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4569;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134230211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1344;AVGPOST=0.9981;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 134230242 . CT C 12457 PASS INDEL;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0834;AVGPOST=0.9957;RSQ=0.9817;ERATE=0.0007;THETA=0.0005;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 134230302 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0707;AVGPOST=0.9992;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 134230459 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0216;AVGPOST=0.9996;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134230538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.3050;AVGPOST=0.9915;RSQ=0.9855;ERATE=0.0009;THETA=0.0002;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 134230560 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3049;AVGPOST=0.9947;RSQ=0.9906;ERATE=0.0004;THETA=0.0004;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 134230562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0291;AVGPOST=0.9988;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134230577 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134230656 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134230662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7379;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134230753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0399;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134230794 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134230806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7675;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134230826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0881;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0007;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 134230864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9374;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134230885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0895;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 134231009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.7035;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134231064 . T TA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7671;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134231084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1296;AVGPOST=0.9991;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 134231138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134231152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134231155 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134231199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8835;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134231311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9358;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134231339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0399;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0004;THETA=0.0015;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134231341 . A AG 4 PASS INDEL;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7255;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134231458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.398;LDAF=0.9799;AVGPOST=0.9690;RSQ=0.4093;ERATE=0.0078;THETA=0.0003;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 134231669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134231817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1254;AVGPOST=0.9985;RSQ=0.9945;ERATE=0.0003;THETA=0.0013;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134232077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1280;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 134232088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.905;LDAF=0.0564;AVGPOST=0.9903;RSQ=0.9322;ERATE=0.0046;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134232216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0859;AVGPOST=0.9993;RSQ=0.9965;ERATE=0.0009;THETA=0.0007;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 134232222 . CATT C 110 PASS INDEL;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5314;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134232320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134232362 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134232471 . CT C 343 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9094;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134232498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134232503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134232510 . TAAG T 414 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7338;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134232806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134232808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0106;AVGPOST=0.9982;RSQ=0.9344;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134232877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0841;AVGPOST=0.9987;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 134232885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0398;AVGPOST=0.9993;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134232893 . AAG A 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134232935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9479;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134232979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8387;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134233037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0846;AVGPOST=0.9984;RSQ=0.9911;ERATE=0.0005;THETA=0.0005;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134233090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5410;AVGPOST=0.9931;RSQ=0.9899;ERATE=0.0006;THETA=0.0019;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 134233170 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0607;AVGPOST=0.9983;RSQ=0.9888;ERATE=0.0003;THETA=0.0035;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 134233321 . TAAAC T 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4807;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134233354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134233369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0215;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0003;THETA=0.0028;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134233656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134233740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9059;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134233747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9224;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134233939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6395;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134234187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0756;AVGPOST=0.9983;RSQ=0.9918;ERATE=0.0004;THETA=0.0006;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 134234262 . A AT 6 PASS INDEL;BAVGPOST=0.998;BRSQ=0.542;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7119;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134234308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8557;ERATE=0.0005;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134234418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5563;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134234447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134234450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.625;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.7016;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134234607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134234647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8696;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134234741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0124;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134234769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6453;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134234831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.974;LDAF=0.1212;AVGPOST=0.9948;RSQ=0.9801;ERATE=0.0003;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 134234870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134234873 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4778;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134234940 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0078;AVGPOST=0.9993;RSQ=0.9640;ERATE=0.0007;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134234954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8625;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134234965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4628;AVGPOST=0.9867;RSQ=0.9809;ERATE=0.0020;THETA=0.0004;AC=1014;AN=2184 GT:DS:GL:BD 0.46428570 0 1 134234983 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235107 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.9011;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134235148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134235228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5640;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7021;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134235637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9577;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134235766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134235948 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9048;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134235959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134235970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134236115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134236139 rs11284658 TA T 72 PASS INDEL;BAVGPOST=0.916;BRSQ=0.366;LDAF=0.0937;AVGPOST=0.9023;RSQ=0.5625;ERATE=0.0066;THETA=0.0012;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 134238054 rs11419376 A AC 69 PASS INDEL;BAVGPOST=0.995;BRSQ=0.751;LDAF=0.0129;AVGPOST=0.9945;RSQ=0.8213;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134238067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8724;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134238353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3325;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 134238505 . CTT C 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134238513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134238561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134238580 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9735;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134238625 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0062;AVGPOST=0.9996;RSQ=0.9727;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134238675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9264;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134238786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134238838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1464;AVGPOST=0.9984;RSQ=0.9959;ERATE=0.0003;THETA=0.0008;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 134238852 . TA T 451 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134238866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0057;AVGPOST=0.9976;RSQ=0.8369;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134238886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134238926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134238929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0133;AVGPOST=0.9994;RSQ=0.9801;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134238931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7542;ERATE=0.0011;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134238998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4327;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134239008 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134239101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6889;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134239223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8440;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134239455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5608;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134239492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7552;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134239573 . CA C 2542 PASS INDEL;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0265;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0002;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134239959 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8654;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134239962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3829;AVGPOST=0.9975;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 134240099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0084;AVGPOST=0.9983;RSQ=0.9062;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134240174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5469;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134240489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9067;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134240508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8903;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134240539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.967;LDAF=0.8103;AVGPOST=0.9827;RSQ=0.9605;ERATE=0.0042;THETA=0.0002;AC=1775;AN=2184 GT:DS:GL:BD 0.81272894 1 1 134240753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5059;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134240822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9984;RSQ=0.9234;ERATE=0.0005;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134240893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.932;LDAF=0.0406;AVGPOST=0.9932;RSQ=0.9313;ERATE=0.0003;THETA=0.0009;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134240901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0259;AVGPOST=0.9994;RSQ=0.9897;ERATE=0.0004;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134240934 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0263;AVGPOST=0.9985;RSQ=0.9765;ERATE=0.0004;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134240936 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.9934;AVGPOST=0.9927;RSQ=0.6757;ERATE=0.0004;THETA=0.0003;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 134240968 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134241004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8194;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0016;THETA=0.0002;AC=1790;AN=2184 GT:DS:GL:BD 0.81959707 1 1 134241228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134241458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4905;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134241506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1174;AVGPOST=0.9982;RSQ=0.9932;ERATE=0.0004;THETA=0.0003;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 134241512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9314;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134241561 . G GA 97 PASS INDEL;BAVGPOST=0.986;BRSQ=0.569;LDAF=0.0338;AVGPOST=0.9589;RSQ=0.4972;ERATE=0.0094;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134241782 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134241788 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134241829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134241832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0219;AVGPOST=0.9991;RSQ=0.9809;ERATE=0.0002;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134241854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0256;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0002;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134242042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134242091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242140 . T TG 52893 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8185;AVGPOST=0.9969;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=1789;AN=2184 GT:DS:GL:BD 0.81913918 1 1 134242225 . TA T 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8763;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134242254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3602;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0008;THETA=0.0004;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 134242380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8771;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134242397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134242470 . CA C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4208;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8196;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134242617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.569;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4120;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242647 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5943;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134242716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9333;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134242747 . CG C 252 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134242747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134242970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7943;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134243067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7825;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=1708;AN=2184 GT:DS:GL:BD 0.78205127 1 1 134243274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3595;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0003;THETA=0.0009;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 134243391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7420;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134243500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5563;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134243501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6720;ERATE=0.0009;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134243640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.9075;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134243719 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134243905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9451;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134243913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6626;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134243964 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9948;RSQ=0.7849;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134244791 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9247;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134244804 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7836;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134244806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.779;LDAF=0.0113;AVGPOST=0.9957;RSQ=0.8616;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134244889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.844;LDAF=0.0242;AVGPOST=0.9969;RSQ=0.9436;ERATE=0.0005;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134244908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4760;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134244978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9566;ERATE=0.0005;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134244991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134245010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0131;AVGPOST=0.9883;RSQ=0.6521;ERATE=0.0012;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134245071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0048;AVGPOST=0.9963;RSQ=0.7240;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134245103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0113;AVGPOST=0.9975;RSQ=0.9121;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9134;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134245405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134245411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245480 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0100;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0002;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1869;AVGPOST=0.9985;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 134245563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8878;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134245622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134245658 . GA G 54 PASS INDEL;BAVGPOST=0.937;BRSQ=0.165;LDAF=0.1452;AVGPOST=0.7916;RSQ=0.3293;ERATE=0.0149;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 134245682 . AG A 2088 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0139;AVGPOST=0.9984;RSQ=0.9511;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134245688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0066;AVGPOST=0.9994;RSQ=0.9584;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134245690 . AG A 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4959;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134245736 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9781;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8821;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134245761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0263;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134245838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134245865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134245924 . AT A 1355 PASS INDEL;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0096;AVGPOST=0.9988;RSQ=0.9447;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134245971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1619;AVGPOST=0.9983;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 134245978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0115;AVGPOST=0.9988;RSQ=0.9569;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134246050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134246053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134246061 . AC A 288 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134246168 . AT A 46 PASS INDEL;BAVGPOST=0.997;BRSQ=0.445;LDAF=0.0043;AVGPOST=0.9934;RSQ=0.4045;ERATE=0.0010;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134246172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7147;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134246328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9836;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134246343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8309;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134246388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8175;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134246493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0119;AVGPOST=0.9994;RSQ=0.9764;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134246602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9984;RSQ=0.9510;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134246640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134246643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8195;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134246810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9117;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134246887 rs113681508 A ATTTCCCCC 302 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5862;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134246996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.9023;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134247013 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0111;AVGPOST=0.9974;RSQ=0.9062;ERATE=0.0005;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134247050 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0100;AVGPOST=0.9990;RSQ=0.9562;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134247062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9987;RSQ=0.4072;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134247080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9831;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134247227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7274;AVGPOST=0.9950;RSQ=0.9921;ERATE=0.0004;THETA=0.0003;AC=1588;AN=2184 GT:DS:GL:BD 0.72710621 1 1 134247277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7882;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134247280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9598;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134247288 . AG A 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7574;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134247300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9708;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134247312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0107;AVGPOST=0.9983;RSQ=0.9402;ERATE=0.0002;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134247321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0128;AVGPOST=0.9983;RSQ=0.9474;ERATE=0.0004;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134247367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134247380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134247535 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0106;AVGPOST=0.9985;RSQ=0.9494;ERATE=0.0002;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134247563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134247607 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9689;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134247683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0180;AVGPOST=0.9996;RSQ=0.9910;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134247808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134247810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0057;AVGPOST=0.9992;RSQ=0.9397;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134247828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134247885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7264;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=1588;AN=2184 GT:DS:GL:BD 0.72710621 1 1 134248136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134248195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7162;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134248221 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134248263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134248314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9090;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134248340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7816;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7581;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134248437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0248;AVGPOST=0.9985;RSQ=0.9752;ERATE=0.0002;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134248500 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9922;ERATE=0.0003;THETA=0.0001;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134248505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134248656 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0325;AVGPOST=0.9993;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134248678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9270;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134248837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9822;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134248864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3502;AVGPOST=0.9958;RSQ=0.9929;ERATE=0.0008;THETA=0.0004;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 134248868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.7203;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134248953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134249021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0829;AVGPOST=0.9992;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 134249022 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134249028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8075;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134249040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134249333 . T TC 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4978;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134249419 . GA G 202 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9412;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134249563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134249656 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134249668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134249697 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8572;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134249776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134249784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134250089 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134250259 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134250271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9613;ERATE=0.0006;THETA=0.0017;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134250578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9193;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134250660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134250668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3079;AVGPOST=0.9986;RSQ=0.9982;ERATE=0.0004;THETA=0.0011;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 134250691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134250871 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.859;LDAF=0.1387;AVGPOST=0.9571;RSQ=0.8591;ERATE=0.0190;THETA=0.0004;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 134250950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134250983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8530;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134251018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7174;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134251024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5861;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134251027 . CT C 2631 PASS INDEL;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0531;AVGPOST=0.9955;RSQ=0.9659;ERATE=0.0008;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134251197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6443;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134251268 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134251326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4226;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134251355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134251421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9587;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134251670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134251680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0182;AVGPOST=0.9984;RSQ=0.9699;ERATE=0.0005;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134251897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6702;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134251920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6968;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134252043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6830;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134252069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0033;AVGPOST=0.9959;RSQ=0.4897;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134252117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1523;AVGPOST=0.9987;RSQ=0.9966;ERATE=0.0004;THETA=0.0012;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 134252233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2883;AVGPOST=0.9974;RSQ=0.9966;ERATE=0.0004;THETA=0.0010;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 134252395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6993;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134252482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134252568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.886;LDAF=0.0196;AVGPOST=0.9955;RSQ=0.9153;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134252702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134252717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8606;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134252742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134252916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134252992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134253095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134253145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134253341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134253446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0537;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 134253725 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8863;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134253754 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6856;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134253947 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134254115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5095;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134254216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6140;ERATE=0.0010;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134254383 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8572;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134254463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8990;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134254497 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7677;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134254526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0045;AVGPOST=0.9960;RSQ=0.6579;ERATE=0.0009;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134254582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0581;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134254595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134254718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1523;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0014;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 134254756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0521;AVGPOST=0.9988;RSQ=0.9908;ERATE=0.0003;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134254894 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0711;AVGPOST=0.9941;RSQ=0.9671;ERATE=0.0006;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 134254987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134254988 . AT A 161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8975;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134255070 . CA C 128 PASS INDEL;BAVGPOST=0.955;BRSQ=0.292;LDAF=0.0316;AVGPOST=0.9702;RSQ=0.6514;ERATE=0.0023;THETA=0.0045;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134256349 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7097;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134256766 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6374;ERATE=0.0008;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134257747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6574;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134258197 . T TA 91 PASS INDEL;BAVGPOST=0.992;BRSQ=0.587;LDAF=0.0115;AVGPOST=0.9895;RSQ=0.6290;ERATE=0.0025;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134258216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6581;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134258232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0086;AVGPOST=0.9956;RSQ=0.8085;ERATE=0.0005;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134258241 . GATTA G 3222 PASS INDEL;BAVGPOST=0.905;BRSQ=0.365;LDAF=0.1324;AVGPOST=0.8284;RSQ=0.3557;ERATE=0.0178;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134258439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.941;LDAF=0.0345;AVGPOST=0.9887;RSQ=0.8674;ERATE=0.0006;THETA=0.0016;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134258527 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.799;LDAF=0.2800;AVGPOST=0.9389;RSQ=0.9058;ERATE=0.0018;THETA=0.0045;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 134258546 . TA T 282 PASS INDEL;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0107;AVGPOST=0.9846;RSQ=0.4224;ERATE=0.0016;THETA=0.0034;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134258600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6205;ERATE=0.0006;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134258828 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.712;LDAF=0.0204;AVGPOST=0.9825;RSQ=0.6749;ERATE=0.0010;THETA=0.0015;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134258830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0093;AVGPOST=0.9941;RSQ=0.7538;ERATE=0.0008;THETA=0.0029;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134258841 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3924;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134259923 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6182;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134260748 . GA G 26 PASS INDEL;BAVGPOST=0.994;BRSQ=0.295;LDAF=0.0089;AVGPOST=0.9888;RSQ=0.4855;ERATE=0.0007;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134260872 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134260974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0524;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134260980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134261033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134261043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134261054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134261056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261060 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7542;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134261082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134261199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134261440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5274;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0004;THETA=0.0005;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 134261458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0020;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134261479 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261566 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134261594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134261686 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134261937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1445;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0004;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134261951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134261972 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134262013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3870;AVGPOST=0.9996;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=843;AN=2184 GT:DS:GL:BD 0.38598901 0 1 134262157 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134262199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134262367 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134262396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134262615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134262657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134262726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5610;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0009;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 134262745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134262802 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134262854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134262883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134262935 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134262979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134263151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.7600;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134263204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5529;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 134263380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6696;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134263535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5390;AVGPOST=0.9889;RSQ=0.9836;ERATE=0.0019;THETA=0.0003;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 134263708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3783;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134263712 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7498;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134263730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0029;AVGPOST=0.9952;RSQ=0.3774;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134263756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.955;LDAF=0.5188;AVGPOST=0.9629;RSQ=0.9465;ERATE=0.0086;THETA=0.0003;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 134263824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7933;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134263849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3842;AVGPOST=0.9981;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 134263864 . ATAT A 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134263921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9038;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134264023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7378;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134264067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134264079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5396;AVGPOST=0.9906;RSQ=0.9864;ERATE=0.0017;THETA=0.0005;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 134264091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7880;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134264195 rs71648231 TTA T 55465 PASS INDEL;BAVGPOST=0.990;BRSQ=0.939;LDAF=0.9172;AVGPOST=0.9643;RSQ=0.8410;ERATE=0.0075;THETA=0.0003;AC=2025;AN=2184 GT:DS:GL:BD 0.92719781 1 1 134264222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5541;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0006;THETA=0.0003;AC=1213;AN=2184 GT:DS:GL:BD 0.55540293 1 1 134264382 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3827;AVGPOST=0.9892;RSQ=0.9843;ERATE=0.0016;THETA=0.0010;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 134264577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.917;LDAF=0.9244;AVGPOST=0.9737;RSQ=0.8704;ERATE=0.0021;THETA=0.0006;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 134264613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8330;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134264665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.964;LDAF=0.5277;AVGPOST=0.9704;RSQ=0.9580;ERATE=0.0028;THETA=0.0005;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 134264695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7392;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134264704 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5437;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134264730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0195;AVGPOST=0.9951;RSQ=0.8961;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134264763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0141;AVGPOST=0.9959;RSQ=0.8759;ERATE=0.0010;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134264793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0277;AVGPOST=0.9985;RSQ=0.9778;ERATE=0.0003;THETA=0.0002;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134265057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9279;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134265080 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0137;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134265112 . TA T 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6372;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134265134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134265158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134265165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9755;ERATE=0.0006;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134265185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9415;AVGPOST=0.9967;RSQ=0.9816;ERATE=0.0006;THETA=0.0004;AC=2057;AN=2184 GT:DS:GL:BD 0.94184983 1 1 134265199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=0.9980;RSQ=0.8778;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134265244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5405;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 134265326 rs34948025 G GA 45679 PASS INDEL;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.5487;AVGPOST=0.9953;RSQ=0.9928;ERATE=0.0006;THETA=0.0005;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 134265440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0034;AVGPOST=0.9950;RSQ=0.5187;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134265476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134265484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.615;LDAF=0.0049;AVGPOST=0.9928;RSQ=0.4293;ERATE=0.0010;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134265542 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7285;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134265546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0066;AVGPOST=0.9946;RSQ=0.6903;ERATE=0.0012;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134265566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134265579 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.787;LDAF=0.0083;AVGPOST=0.9966;RSQ=0.8308;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134265593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134265597 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0034;AVGPOST=0.9957;RSQ=0.5265;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134265622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0121;AVGPOST=0.9987;RSQ=0.9557;ERATE=0.0004;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134265667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3789;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0006;THETA=0.0003;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134265682 . AC A 628 PASS INDEL;BAVGPOST=0.992;BRSQ=0.743;LDAF=0.0155;AVGPOST=0.9918;RSQ=0.8025;ERATE=0.0006;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134265760 . TA T 341 PASS INDEL;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0087;AVGPOST=0.9969;RSQ=0.8650;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134265833 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.697;LDAF=0.0137;AVGPOST=0.9875;RSQ=0.6417;ERATE=0.0018;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134265834 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5404;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0010;THETA=0.0002;AC=1182;AN=2184 GT:DS:GL:BD 0.54120880 1 1 134265868 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5387;AVGPOST=0.9925;RSQ=0.9891;ERATE=0.0011;THETA=0.0003;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 134265886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9182;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134266135 . CT C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4093;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134266273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7003;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134266358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6958;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134266364 . CAG C 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4468;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134266465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8456;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134266492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5005;AVGPOST=0.9975;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 134266495 . CAATTA C 1039 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0034;AVGPOST=0.9970;RSQ=0.6956;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134266500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8262;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134266516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134266569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2515;AVGPOST=0.9968;RSQ=0.9934;ERATE=0.0005;THETA=0.0002;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 134266581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0135;AVGPOST=0.9875;RSQ=0.6542;ERATE=0.0006;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134267242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4539;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134267483 . T TA 240 PASS INDEL;BAVGPOST=0.998;BRSQ=0.721;LDAF=0.0043;AVGPOST=0.9964;RSQ=0.7350;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134267499 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5043;AVGPOST=0.9973;RSQ=0.9960;ERATE=0.0007;THETA=0.0003;AC=1103;AN=2184 GT:DS:GL:BD 0.50503665 1 1 134267591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8853;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134267593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4576;AVGPOST=0.9964;RSQ=0.9949;ERATE=0.0011;THETA=0.0003;AC=997;AN=2184 GT:DS:GL:BD 0.45650184 0 1 134267736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6565;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134267743 . C CA 640 PASS INDEL;BAVGPOST=0.930;BRSQ=0.525;LDAF=0.1286;AVGPOST=0.8654;RSQ=0.4949;ERATE=0.0407;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 134267793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134267879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134267939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134268037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2919;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 134268140 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0597;AVGPOST=0.9972;RSQ=0.9805;ERATE=0.0004;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134268205 . AG A 65 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0053;AVGPOST=0.9962;RSQ=0.7486;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134268219 rs79430492 AT A 82 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0054;AVGPOST=0.9961;RSQ=0.7439;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134268222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8873;ERATE=0.0003;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134268275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9290;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134268316 . G GA 453 PASS INDEL;BAVGPOST=0.990;BRSQ=0.691;LDAF=0.0230;AVGPOST=0.9777;RSQ=0.6195;ERATE=0.0037;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134268473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0082;AVGPOST=0.9976;RSQ=0.8744;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134268635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.9117;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134268778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0004;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134268846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9985;RSQ=0.4079;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134268854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8533;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134268887 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134269064 . CAGG C 73 PASS INDEL;BAVGPOST=0.994;BRSQ=0.122;LDAF=0.0372;AVGPOST=0.9473;RSQ=0.4328;ERATE=0.0018;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134269092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8317;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134269148 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6954;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134269261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134269382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9627;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134269440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5062;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134269496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9711;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134269606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134269659 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3438;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134269747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4986;AVGPOST=0.9966;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 134269982 . AC A 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0046;AVGPOST=0.9964;RSQ=0.6442;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134269996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6208;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134270038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0607;AVGPOST=0.9983;RSQ=0.9891;ERATE=0.0004;THETA=0.0004;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 134270143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7279;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134270281 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134270296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134270298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9063;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134270377 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0268;AVGPOST=0.9992;RSQ=0.9852;ERATE=0.0004;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134270383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7359;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134270428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0210;AVGPOST=0.9990;RSQ=0.9789;ERATE=0.0004;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134270441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.468;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6320;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134270523 . TG T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3363;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134270621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134270737 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7777;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134270896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.638;LDAF=0.0064;AVGPOST=0.9941;RSQ=0.6321;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134270969 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0106;AVGPOST=0.9950;RSQ=0.7958;ERATE=0.0006;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134271022 . GTTC G 165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6251;ERATE=0.0014;THETA=0.0141;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134272513 rs112920181 TG T 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0004;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134272546 rs11417748 T TC 26812 PASS INDEL;BAVGPOST=0.765;BRSQ=0.359;LDAF=0.4130;AVGPOST=0.8135;RSQ=0.4416;ERATE=0.0415;THETA=0.0084;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 134272995 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.464;LDAF=0.0028;AVGPOST=0.9956;RSQ=0.3226;ERATE=0.0008;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134273097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5467;ERATE=0.0005;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134273117 . AC A 2890 PASS INDEL;BAVGPOST=0.792;BRSQ=0.259;LDAF=0.2263;AVGPOST=0.7170;RSQ=0.3178;ERATE=0.0314;THETA=0.0085;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 134275982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.692;LDAF=0.0348;AVGPOST=0.9862;RSQ=0.8221;ERATE=0.0010;THETA=0.0014;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134276725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.329;LDAF=0.9456;AVGPOST=0.9361;RSQ=0.5311;ERATE=0.0029;THETA=0.0043;AC=2119;AN=2184 GT:DS:GL:BD 0.97023809 1 1 134279377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5670;ERATE=0.0005;THETA=0.0156;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134280361 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.656;LDAF=0.0819;AVGPOST=0.9664;RSQ=0.8222;ERATE=0.0028;THETA=0.0090;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 134280368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.638;LDAF=0.0216;AVGPOST=0.9872;RSQ=0.7599;ERATE=0.0011;THETA=0.0062;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134280370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0323;AVGPOST=0.9992;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 134280526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8919;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134280532 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9286;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134280644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134280682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0002;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134280701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.888;LDAF=0.0104;AVGPOST=0.9952;RSQ=0.8200;ERATE=0.0005;THETA=0.0061;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134281042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134281157 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0091;AVGPOST=0.9985;RSQ=0.9442;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134281159 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4936;ERATE=0.0005;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134281495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.787;LDAF=0.0333;AVGPOST=0.9910;RSQ=0.8914;ERATE=0.0006;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134281634 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134281674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134282094 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0181;AVGPOST=0.9974;RSQ=0.9451;ERATE=0.0005;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134282101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.4020;AVGPOST=0.9926;RSQ=0.9893;ERATE=0.0004;THETA=0.0023;AC=876;AN=2184 GT:DS:GL:BD 0.40109891 0 1 134282102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5929;ERATE=0.0003;THETA=0.0023;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134282103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0039;AVGPOST=0.9981;RSQ=0.8087;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134282281 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134282290 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5995;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134282487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9992;RSQ=0.9616;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134282615 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134282733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0348;AVGPOST=0.9989;RSQ=0.9860;ERATE=0.0002;THETA=0.0010;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134282930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9474;ERATE=0.0002;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134282937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9070;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134283252 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9534;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134283366 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134283430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8629;ERATE=0.0016;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134283670 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7704;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134283829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7528;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134283831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9864;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134283860 rs111358816 C CAAG 96655 PASS INDEL;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5159;AVGPOST=0.9712;RSQ=0.9586;ERATE=0.0083;THETA=0.0010;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 134283914 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134283970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0756;AVGPOST=0.9975;RSQ=0.9879;ERATE=0.0004;THETA=0.0006;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 134284083 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134284111 . CTT C 1501 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9655;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134284212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7657;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134284354 . TCTC T 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5058;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134284402 . ATT A 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5691;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134284422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134284560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134284574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7679;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134284718 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9978;RSQ=0.9171;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134284794 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0135;AVGPOST=0.9963;RSQ=0.9119;ERATE=0.0005;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134284832 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1026;AVGPOST=0.9984;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 134284950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134284966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4045;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 134285091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134285217 . G GA 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134285386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0724;AVGPOST=0.9947;RSQ=0.9695;ERATE=0.0006;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 134285509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5470;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134285516 . T TA 12478 PASS INDEL;BAVGPOST=0.823;BRSQ=0.491;LDAF=0.7434;AVGPOST=0.7497;RSQ=0.4723;ERATE=0.0410;THETA=0.0007;AC=1756;AN=2184 GT:DS:GL:BD 0.80402929 1 1 134285822 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.683;LDAF=0.8984;AVGPOST=0.9154;RSQ=0.6606;ERATE=0.0124;THETA=0.0002;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 134285823 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.843;LDAF=0.0454;AVGPOST=0.9745;RSQ=0.7852;ERATE=0.0055;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134285825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0051;AVGPOST=0.9940;RSQ=0.5485;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134285844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0076;AVGPOST=0.9940;RSQ=0.6765;ERATE=0.0008;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134285851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9477;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134285881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0110;AVGPOST=0.9996;RSQ=0.9846;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134285894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0274;AVGPOST=0.9918;RSQ=0.8971;ERATE=0.0009;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134285935 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8286;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134285978 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0241;AVGPOST=0.9972;RSQ=0.9543;ERATE=0.0004;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134285989 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4610;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134286010 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134286032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0051;AVGPOST=0.9969;RSQ=0.7479;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134286052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0069;AVGPOST=0.9970;RSQ=0.8129;ERATE=0.0006;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134286089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0845;AVGPOST=0.9979;RSQ=0.9886;ERATE=0.0005;THETA=0.0004;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 134286100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.496;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4970;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134286124 . TCTC T 122 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7774;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134286155 . A AT 78 PASS INDEL;BAVGPOST=0.996;BRSQ=0.645;LDAF=0.0085;AVGPOST=0.9895;RSQ=0.5043;ERATE=0.0024;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134286242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8094;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134286361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6470;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134286395 . G GA 51 PASS INDEL;BAVGPOST=0.993;BRSQ=0.447;LDAF=0.0152;AVGPOST=0.9779;RSQ=0.4368;ERATE=0.0033;THETA=0.0024;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134286493 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8348;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134286623 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.8391;AVGPOST=0.9944;RSQ=0.9857;ERATE=0.0005;THETA=0.0004;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 134286624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8510;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134286660 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.905;LDAF=0.0131;AVGPOST=0.9979;RSQ=0.9392;ERATE=0.0005;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134286889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0205;AVGPOST=0.9936;RSQ=0.8897;ERATE=0.0006;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134286915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5520;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134287011 . C CT 40 PASS INDEL;BAVGPOST=0.988;BRSQ=0.448;LDAF=0.0356;AVGPOST=0.9529;RSQ=0.4504;ERATE=0.0061;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134287054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.980;LDAF=0.2040;AVGPOST=0.9927;RSQ=0.9817;ERATE=0.0008;THETA=0.0006;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 134287288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0047;AVGPOST=0.9942;RSQ=0.5389;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134287321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134287673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0053;AVGPOST=0.9979;RSQ=0.8515;ERATE=0.0005;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134287690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134287707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134287740 . C CT 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0046;AVGPOST=0.9947;RSQ=0.5224;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134287747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.3296;AVGPOST=0.9850;RSQ=0.9771;ERATE=0.0004;THETA=0.0002;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 134287854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.969;LDAF=0.4616;AVGPOST=0.9838;RSQ=0.9793;ERATE=0.0005;THETA=0.0014;AC=1014;AN=2184 GT:DS:GL:BD 0.46428570 0 1 134287855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134287890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6128;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134287891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9198;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134287947 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.4899;AVGPOST=0.9917;RSQ=0.9881;ERATE=0.0007;THETA=0.0002;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 134287957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0806;AVGPOST=0.9952;RSQ=0.9761;ERATE=0.0007;THETA=0.0002;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 134288185 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6170;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134288317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9770;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134288371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134288378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134288379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134288384 . G GC 401 PASS INDEL;BAVGPOST=0.996;BRSQ=0.698;LDAF=0.0066;AVGPOST=0.9967;RSQ=0.7822;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134288516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0057;AVGPOST=0.9906;RSQ=0.3401;ERATE=0.0009;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134288527 . C CA 758 PASS INDEL;BAVGPOST=0.958;BRSQ=0.591;LDAF=0.0937;AVGPOST=0.8944;RSQ=0.4802;ERATE=0.0349;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134288620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9572;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134288689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3763;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134288728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9272;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134288812 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7727;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134288828 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134288874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9422;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134289155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2065;AVGPOST=0.9931;RSQ=0.9845;ERATE=0.0005;THETA=0.0005;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 134289277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0232;AVGPOST=0.9974;RSQ=0.9534;ERATE=0.0006;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134289350 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3381;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 134289461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7057;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134289560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8381;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134289757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3547;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134290001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134290012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7657;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134290049 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5293;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134290077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8949;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134290238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134290295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7559;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134290313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7763;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134290389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8131;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134290390 rs59769495 TGTTCTATAAA T 58393 PASS INDEL;BAVGPOST=0.973;BRSQ=0.948;LDAF=0.3327;AVGPOST=0.9909;RSQ=0.9856;ERATE=0.0008;THETA=0.0003;AC=732;AN=2184 GT:DS:GL:BD 0.33516484 0 1 134290411 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134290460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5946;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134290472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8403;AVGPOST=0.9983;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=1835;AN=2184 GT:DS:GL:BD 0.84020144 1 1 134290635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.622;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5582;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134290757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0035;AVGPOST=0.9960;RSQ=0.5409;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134290762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0213;AVGPOST=0.9986;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134290924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8023;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134291005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5393;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134291025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0952;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134291081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8727;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134291147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134291173 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.871;LDAF=0.0296;AVGPOST=0.9882;RSQ=0.8457;ERATE=0.0007;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134291238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134291320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134291321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1967;AVGPOST=0.9974;RSQ=0.9931;ERATE=0.0006;THETA=0.0011;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 134291385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6902;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134291486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0168;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134291550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9996;RSQ=0.9836;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134291588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.6949;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134291678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9915;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134291722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134291744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9993;RSQ=0.9570;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134291844 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9964;RSQ=0.5929;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134291892 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0050;AVGPOST=0.9958;RSQ=0.7205;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134291903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4402;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134291924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134291939 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134292047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5189;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9160;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134292282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.784;LDAF=0.0054;AVGPOST=0.9987;RSQ=0.8914;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134292322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6253;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134292408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292410 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7509;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134292478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6374;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134292670 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6075;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292689 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5371;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134292707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5334;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134292744 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8851;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134292755 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1472;AVGPOST=0.9957;RSQ=0.9857;ERATE=0.0005;THETA=0.0014;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 134292783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0062;AVGPOST=0.9968;RSQ=0.8095;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134292814 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.810;LDAF=0.0047;AVGPOST=0.9963;RSQ=0.6804;ERATE=0.0014;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134292862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5447;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292878 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134292935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4564;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134292982 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0065;AVGPOST=0.9993;RSQ=0.9479;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134293009 . TC T 8264 PASS INDEL;BAVGPOST=0.971;BRSQ=0.917;LDAF=0.1891;AVGPOST=0.9910;RSQ=0.9784;ERATE=0.0006;THETA=0.0007;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 134293079 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0093;AVGPOST=0.9992;RSQ=0.9698;ERATE=0.0003;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134293091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9869;ERATE=0.0003;THETA=0.0010;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134293215 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1444;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 134293316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.970;LDAF=0.2010;AVGPOST=0.9972;RSQ=0.9929;ERATE=0.0004;THETA=0.0007;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 134293388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134293441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134293514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134293515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0022;AVGPOST=0.9998;RSQ=0.9665;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134293537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134293542 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1947;AVGPOST=0.9976;RSQ=0.9945;ERATE=0.0034;THETA=0.0004;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 134293593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0177;AVGPOST=0.9983;RSQ=0.9622;ERATE=0.0003;THETA=0.0020;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134293656 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134293689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134293750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8284;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293760 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134293767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.8745;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134293768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8291;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9998;RSQ=0.6246;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134293876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134293907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0145;AVGPOST=0.9997;RSQ=0.9929;ERATE=0.0003;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134293921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1558;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 134293927 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134293957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1572;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 134293970 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134294002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8888;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134294010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8451;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134294161 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134294162 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7159;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294286 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2031;AVGPOST=0.9980;RSQ=0.9947;ERATE=0.0004;THETA=0.0010;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 134294303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134294338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134294352 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134294371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6111;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134294396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134294432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8395;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134294561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134294610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6329;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294611 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4219;AVGPOST=0.9968;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 134294615 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4220;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 134294625 . TA T 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134294665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134294669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134294689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9199;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134294701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6303;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294842 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4227;AVGPOST=0.9983;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 134294868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134294925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7412;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134294951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.6009;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134295025 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5586;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134295068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1963;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0003;THETA=0.0007;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 134295093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8853;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134295169 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0035;AVGPOST=0.9983;RSQ=0.8238;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134295200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134295260 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0197;AVGPOST=0.9993;RSQ=0.9842;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134295295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134295419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5568;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134295434 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134295467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134295521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0052;AVGPOST=0.9970;RSQ=0.8030;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134295522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7135;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134295536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6366;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134295557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134295591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134295633 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8912;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134295646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134295660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134295683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5317;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134295684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9163;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134295716 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0620;AVGPOST=0.9989;RSQ=0.9939;ERATE=0.0003;THETA=0.0007;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 134295758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.946;LDAF=0.3999;AVGPOST=0.9722;RSQ=0.9582;ERATE=0.0008;THETA=0.0003;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 134295859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.928;LDAF=0.4043;AVGPOST=0.9764;RSQ=0.9640;ERATE=0.0008;THETA=0.0007;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 134295860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0196;AVGPOST=0.9992;RSQ=0.9807;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134295882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134296070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.914;LDAF=0.0297;AVGPOST=0.9945;RSQ=0.9285;ERATE=0.0004;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134296164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134296247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134296270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134296382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134296592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8578;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134296684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6668;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134296730 rs67238947 CCTT C 49069 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3991;AVGPOST=0.9938;RSQ=0.9894;ERATE=0.0007;THETA=0.0007;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 134296741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9038;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134296895 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134296929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134297076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297137 . TCTG T 222 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5630;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134297223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4958;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7096;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134297266 . CA C 288 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134297458 . GTC G 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.5988;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134297485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7461;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6341;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134297784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0104;AVGPOST=0.9986;RSQ=0.9494;ERATE=0.0003;THETA=0.0016;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134297785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1132;AVGPOST=0.9987;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 134297842 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134297862 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9075;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134297866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0052;AVGPOST=0.9977;RSQ=0.8149;ERATE=0.0010;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134297984 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6960;ERATE=0.0004;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134298036 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7446;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134298208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134298246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0213;AVGPOST=0.9985;RSQ=0.9704;ERATE=0.0005;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134298439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.6898;ERATE=0.0007;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134298440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1399;AVGPOST=0.9974;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 134298538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0338;AVGPOST=0.9975;RSQ=0.9694;ERATE=0.0004;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134298544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7425;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134298545 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0307;AVGPOST=0.9980;RSQ=0.9732;ERATE=0.0005;THETA=0.0062;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134298620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6012;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134298679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0084;AVGPOST=0.9988;RSQ=0.9376;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134298683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8661;ERATE=0.0003;THETA=0.0071;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134298703 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7640;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134298728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9393;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134298876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0310;AVGPOST=0.9957;RSQ=0.9473;ERATE=0.0029;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134298968 . CT C 736 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.8882;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134298982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1214;AVGPOST=0.9933;RSQ=0.9801;ERATE=0.0017;THETA=0.0013;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 134298998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1170;AVGPOST=0.9964;RSQ=0.9884;ERATE=0.0005;THETA=0.0007;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 134299000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5515;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134299011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9263;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134299102 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.5667;AVGPOST=0.9879;RSQ=0.9820;ERATE=0.0030;THETA=0.0008;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 134299132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5981;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134299244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.959;LDAF=0.4947;AVGPOST=0.9665;RSQ=0.9506;ERATE=0.0113;THETA=0.0011;AC=1083;AN=2184 GT:DS:GL:BD 0.49587911 0 1 134299406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9046;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134299449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0038;AVGPOST=0.9974;RSQ=0.7167;ERATE=0.0009;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134299541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.808;LDAF=0.0081;AVGPOST=0.9960;RSQ=0.8022;ERATE=0.0006;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134299557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.876;LDAF=0.4492;AVGPOST=0.9244;RSQ=0.8828;ERATE=0.0224;THETA=0.0008;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 134299561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.646;LDAF=0.0056;AVGPOST=0.9969;RSQ=0.7676;ERATE=0.0006;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134299600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0095;AVGPOST=0.9961;RSQ=0.8339;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134299662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3174;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134299692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.917;LDAF=0.0221;AVGPOST=0.9935;RSQ=0.8788;ERATE=0.0009;THETA=0.0012;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134299698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.795;LDAF=0.0192;AVGPOST=0.9948;RSQ=0.8886;ERATE=0.0009;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134299788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0212;AVGPOST=0.9995;RSQ=0.9889;ERATE=0.0004;THETA=0.0031;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134299828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134300056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134300161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9780;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134300197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134300305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134300535 . GA G 386 PASS INDEL;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7727;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134300558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7230;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134300753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134300789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.9989;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0004;THETA=0.0005;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 134301024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8587;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134301061 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9801;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134301063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301146 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301207 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8564;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134301276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0408;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134301370 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9684;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134301413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9848;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134301530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134301689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134301690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134301745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301766 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2751;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 134301814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134301918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6846;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134302159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134302165 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8934;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134302166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1673;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0004;THETA=0.0051;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 134302236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.9818;AVGPOST=0.9990;RSQ=0.9782;ERATE=0.0004;THETA=0.0004;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 134302363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.8447;AVGPOST=0.9951;RSQ=0.9853;ERATE=0.0004;THETA=0.0005;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 134302377 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134302475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134302510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0375;AVGPOST=0.9976;RSQ=0.9729;ERATE=0.0003;THETA=0.0014;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134302511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.1662;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0004;THETA=0.0006;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134302534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0253;AVGPOST=0.9985;RSQ=0.9722;ERATE=0.0004;THETA=0.0014;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134302618 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6277;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134302672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8747;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134302742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134302816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5909;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134302859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7030;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134302912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8125;ERATE=0.0015;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134303190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134303193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9358;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134303212 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134303287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1429;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0004;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 134303389 . TC T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0025;AVGPOST=0.9964;RSQ=0.4473;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134303418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0072;AVGPOST=0.9963;RSQ=0.7981;ERATE=0.0006;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134303640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1511;AVGPOST=0.9987;RSQ=0.9959;ERATE=0.0003;THETA=0.0009;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 134303659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9670;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134303757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0136;AVGPOST=0.9997;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134303825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134303859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6503;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134303905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5301;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134303952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.881;LDAF=0.0225;AVGPOST=0.9894;RSQ=0.8237;ERATE=0.0005;THETA=0.0021;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134304100 . GCTGTGCC G 1907 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0095;AVGPOST=0.9960;RSQ=0.8398;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134304207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.880;LDAF=0.0255;AVGPOST=0.9919;RSQ=0.8879;ERATE=0.0008;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134304283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134304423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134304497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0378;AVGPOST=0.9994;RSQ=0.9924;ERATE=0.0004;THETA=0.0011;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 134304581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0466;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0004;THETA=0.0016;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 134304624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134304698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8608;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134304736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134304738 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0465;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0008;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 134304792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8511;ERATE=0.0013;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134304796 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134304870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5316;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134304912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6577;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134305101 . GT G 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5654;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134305196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9583;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134305310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0137;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134305315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0647;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0007;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 134305318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6145;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134305438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1398;AVGPOST=0.9980;RSQ=0.9931;ERATE=0.0004;THETA=0.0038;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 134305466 rs113608194 CT C 20646 PASS INDEL;BAVGPOST=0.983;BRSQ=0.966;LDAF=0.2546;AVGPOST=0.9884;RSQ=0.9805;ERATE=0.0006;THETA=0.0010;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 134305620 rs11301124 TC T 20631 PASS INDEL;BAVGPOST=0.983;BRSQ=0.966;LDAF=0.2500;AVGPOST=0.9910;RSQ=0.9843;ERATE=0.0005;THETA=0.0007;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 134305622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134305658 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7300;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134305684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0085;AVGPOST=0.9983;RSQ=0.9340;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134305747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1034;AVGPOST=0.9990;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 134305900 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134305905 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134305932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6258;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134305967 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0063;AVGPOST=0.9989;RSQ=0.9373;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134305977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134306021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0003;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134306216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7142;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134306517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.911;LDAF=0.0762;AVGPOST=0.9661;RSQ=0.8246;ERATE=0.0008;THETA=0.0015;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 134306628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0047;AVGPOST=0.9957;RSQ=0.6217;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134306646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3277;ERATE=0.0009;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134306671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0096;AVGPOST=0.9969;RSQ=0.8539;ERATE=0.0007;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134306717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.693;LDAF=0.0292;AVGPOST=0.9815;RSQ=0.7621;ERATE=0.0012;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134306787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.599;LDAF=0.0127;AVGPOST=0.9847;RSQ=0.5664;ERATE=0.0009;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134306832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5909;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134306904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134307034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4172;AVGPOST=0.9958;RSQ=0.9940;ERATE=0.0003;THETA=0.0012;AC=911;AN=2184 GT:DS:GL:BD 0.41712454 0 1 134307076 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134307149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.913;LDAF=0.8462;AVGPOST=0.9834;RSQ=0.9571;ERATE=0.0008;THETA=0.0010;AC=1847;AN=2184 GT:DS:GL:BD 0.84569597 1 1 134307368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.7897;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134307530 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0086;AVGPOST=0.9940;RSQ=0.7466;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134307739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.696;LDAF=0.0509;AVGPOST=0.9793;RSQ=0.8448;ERATE=0.0006;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134307975 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.929;LDAF=0.7898;AVGPOST=0.9709;RSQ=0.9473;ERATE=0.0023;THETA=0.0009;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 134308057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.933;LDAF=0.7812;AVGPOST=0.9493;RSQ=0.9067;ERATE=0.0055;THETA=0.0005;AC=1716;AN=2184 GT:DS:GL:BD 0.78571427 1 1 134308158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7463;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134308351 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6549;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134308392 . C CA 358 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9408;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134308397 . CCT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6907;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134308408 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0045;AVGPOST=0.9965;RSQ=0.6975;ERATE=0.0009;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134308457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9832;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134308479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7652;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134308608 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134308710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8297;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134308762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134308869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0064;AVGPOST=0.9945;RSQ=0.6806;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134309032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.422;LDAF=0.0099;AVGPOST=0.9913;RSQ=0.6025;ERATE=0.0013;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134309078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.847;LDAF=0.0125;AVGPOST=0.9949;RSQ=0.8458;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134309192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134309369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0056;AVGPOST=0.9952;RSQ=0.6308;ERATE=0.0008;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134309493 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5818;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134309553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4387;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134309613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9978;RSQ=0.8805;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134309624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9428;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134309743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134309949 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7578;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134309951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134310030 . TG T 257 PASS INDEL;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0051;AVGPOST=0.9959;RSQ=0.6949;ERATE=0.0012;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134310094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134310145 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134310263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.9070;AVGPOST=0.9964;RSQ=0.9852;ERATE=0.0005;THETA=0.0005;AC=1982;AN=2184 GT:DS:GL:BD 0.90750915 1 1 134310268 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.6005;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134310350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0015;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134310647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0031;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134310660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9595;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134310686 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0269;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134310732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134310760 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134310820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.854;LDAF=0.0441;AVGPOST=0.9836;RSQ=0.8616;ERATE=0.0275;THETA=0.0020;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134310828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134310877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134311008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134311047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4177;AVGPOST=0.9999;RSQ=0.9999;ERATE=0.0003;THETA=0.0007;AC=912;AN=2184 GT:DS:GL:BD 0.41758242 0 1 134311106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9997;RSQ=0.9220;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134311133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134311136 . CT C 577 PASS INDEL;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0039;AVGPOST=0.9968;RSQ=0.6938;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134311291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6468;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134311353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2743;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0005;THETA=0.0011;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 134311359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0162;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134311367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2093;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 134311420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134311453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0270;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134311469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0115;AVGPOST=0.9991;RSQ=0.9727;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134311584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0149;AVGPOST=0.9988;RSQ=0.9687;ERATE=0.0004;THETA=0.0022;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134311667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0088;AVGPOST=0.9985;RSQ=0.9412;ERATE=0.0009;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134311714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5338;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134311745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134311748 rs66519969 GCTCGTCTT G 18052 PASS INDEL;BAVGPOST=0.974;BRSQ=0.932;LDAF=0.2148;AVGPOST=0.9938;RSQ=0.9856;ERATE=0.0005;THETA=0.0003;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 134311763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.3529;AVGPOST=0.9936;RSQ=0.9903;ERATE=0.0004;THETA=0.0006;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 134311779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5614;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134311788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134311807 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134311999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0325;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0006;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134312159 rs67397720 TC T 4850 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0260;AVGPOST=0.9992;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134312179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2502;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0028;THETA=0.0005;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 134312250 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8561;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134312278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134312450 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312495 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312511 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134312570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134312589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134312696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134312737 . CTA C 101 PASS INDEL;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5771;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134312878 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134312940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134313007 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9111;ERATE=0.0008;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134313107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8816;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134313119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134313376 . C CAG 190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6959;ERATE=0.0006;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134313517 . G GCA 150 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7450;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134313523 . G GT 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7885;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134313524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134313567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134313654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134313682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9961;RSQ=0.7528;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134313831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5297;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134313846 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.503;LDAF=0.0068;AVGPOST=0.9914;RSQ=0.4942;ERATE=0.0027;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134313930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134313987 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9743;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134314020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134314078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3321;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134314206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6081;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134314207 . TC T 519 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134314236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2484;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 134314320 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8295;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134314322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134314348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134314449 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134314755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134314772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0014;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134314826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2742;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0006;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 134314941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134314973 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134315210 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9010;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134315307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315316 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.8673;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134315339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134315541 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134315578 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134315594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315665 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0027;AVGPOST=0.9955;RSQ=0.3769;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134315883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134315886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3559;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0009;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 134315909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134316013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.978;LDAF=0.0645;AVGPOST=0.9975;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 134316080 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134316117 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134316120 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9425;ERATE=0.0005;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134316159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7646;ERATE=0.0013;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134316193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9976;RSQ=0.7670;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134316452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134316706 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.9937;AVGPOST=0.9982;RSQ=0.8964;ERATE=0.0003;THETA=0.0007;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 134316765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6846;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134316790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6396;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134316793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9092;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134316796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8806;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134316809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134316975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8492;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134316999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134317140 . A AC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134317293 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1654;AVGPOST=0.9940;RSQ=0.9835;ERATE=0.0004;THETA=0.0029;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 134317474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134317845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7605;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134317971 rs113375592 T TG 6668 PASS INDEL;BAVGPOST=0.906;BRSQ=0.727;LDAF=0.1803;AVGPOST=0.8905;RSQ=0.7380;ERATE=0.0264;THETA=0.0003;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134318021 . G GT 137 PASS INDEL;BAVGPOST=0.958;BRSQ=0.425;LDAF=0.0313;AVGPOST=0.9641;RSQ=0.5564;ERATE=0.0005;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134318022 . CATGCAT C 212 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134318117 . AT A 270 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5758;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134318128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134318168 . CCA C 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5107;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134318177 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6813;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134318184 . TCTC T 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6207;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134318219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9053;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134318253 . C CT 94 PASS INDEL;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7311;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134318612 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9775;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134318675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134318728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6729;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134318880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9403;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134318998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8209;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134319045 . C CT 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134319059 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9830;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134319082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134319093 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9972;RSQ=0.7508;ERATE=0.0008;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134319234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134319299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9690;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134319428 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7999;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134319530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134319600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134319654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8848;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134319686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134319710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134319919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134319965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.918;LDAF=0.0597;AVGPOST=0.9918;RSQ=0.9467;ERATE=0.0004;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134319972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6680;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134320016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134320100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6732;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134320138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134320173 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7361;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134320239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0232;AVGPOST=0.9986;RSQ=0.9723;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134320266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134320276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134320310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0033;AVGPOST=0.9976;RSQ=0.6977;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134320595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0075;AVGPOST=0.9977;RSQ=0.8743;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134320689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.6223;AVGPOST=0.9850;RSQ=0.9776;ERATE=0.0007;THETA=0.0004;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 134320696 . C CT 79 PASS INDEL;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.4635;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134320747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7589;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134320819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134320926 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134321026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134321281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6559;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134321516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0309;AVGPOST=0.9951;RSQ=0.9398;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134321527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0075;AVGPOST=0.9972;RSQ=0.8310;ERATE=0.0006;THETA=0.0069;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134321541 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7566;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134321582 . A AATAAGG 539 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8770;ERATE=0.0004;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134321644 rs71766495 CAG C 911 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7931;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134321694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.879;LDAF=0.0104;AVGPOST=0.9971;RSQ=0.8773;ERATE=0.0006;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134321776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7262;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134321830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1496;AVGPOST=0.9979;RSQ=0.9938;ERATE=0.0004;THETA=0.0006;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 134322075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8986;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134322080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.751;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7082;ERATE=0.0004;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134322085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.793;LDAF=0.0158;AVGPOST=0.9876;RSQ=0.7195;ERATE=0.0010;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134322095 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0509;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0014;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134322293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134322326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1364;AVGPOST=0.9985;RSQ=0.9951;ERATE=0.0003;THETA=0.0015;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 134322439 rs72508395 C CA 55426 PASS INDEL;BAVGPOST=0.981;BRSQ=0.974;LDAF=0.3680;AVGPOST=0.9770;RSQ=0.9694;ERATE=0.0004;THETA=0.0004;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 134322507 . A AT 5555 PASS INDEL;BAVGPOST=0.965;BRSQ=0.940;LDAF=0.3297;AVGPOST=0.9577;RSQ=0.9406;ERATE=0.0004;THETA=0.0004;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 134322510 . A AC 5691 PASS INDEL;BAVGPOST=0.964;BRSQ=0.939;LDAF=0.3289;AVGPOST=0.9570;RSQ=0.9394;ERATE=0.0006;THETA=0.0007;AC=729;AN=2184 GT:DS:GL:BD 0.33379120 0 1 134322511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8727;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134322627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4285;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322721 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134322793 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6273;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322803 . A AC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3860;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322825 . G GC 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5730;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134322941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134323053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6428;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134323261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.8160;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134323307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5669;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134323315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0314;AVGPOST=0.9989;RSQ=0.9829;ERATE=0.0005;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134323498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9422;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134323499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0315;AVGPOST=0.9985;RSQ=0.9801;ERATE=0.0005;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 134323596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0574;AVGPOST=0.9977;RSQ=0.9842;ERATE=0.0007;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 134323640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0051;AVGPOST=0.9957;RSQ=0.6702;ERATE=0.0018;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134323679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134323743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7608;AVGPOST=0.9943;RSQ=0.9887;ERATE=0.0006;THETA=0.0007;AC=1660;AN=2184 GT:DS:GL:BD 0.76007324 1 1 134323814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.861;LDAF=0.0133;AVGPOST=0.9963;RSQ=0.8958;ERATE=0.0004;THETA=0.0034;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134323853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5950;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134323907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7328;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134324032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9669;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134324114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134324234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7615;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134324285 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0258;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0004;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134324316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134324385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134324436 rs72438839 TAC T 188 PASS INDEL;BAVGPOST=0.987;BRSQ=0.679;LDAF=0.0337;AVGPOST=0.9641;RSQ=0.5477;ERATE=0.0131;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134324476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134324478 . AAC A 348 PASS INDEL;BAVGPOST=0.971;BRSQ=0.625;LDAF=0.0566;AVGPOST=0.9406;RSQ=0.5413;ERATE=0.0194;THETA=0.0008;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134324495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0134;AVGPOST=0.9977;RSQ=0.9317;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134324509 . CAT C 16120 PASS INDEL;BAVGPOST=0.991;BRSQ=0.337;LDAF=0.9823;AVGPOST=0.9725;RSQ=0.3956;ERATE=0.0034;THETA=0.0010;AC=2167;AN=2184 GT:DS:GL:BD 0.99221611 1 1 134324509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.712;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134324614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134324786 . A AT 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6171;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134324861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0416;AVGPOST=0.9981;RSQ=0.9824;ERATE=0.0003;THETA=0.0012;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134325207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7054;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134325210 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134325220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8187;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134325305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6788;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134325425 rs11463340 T TA 138 PASS INDEL;BAVGPOST=0.996;BRSQ=0.496;LDAF=0.0088;AVGPOST=0.9890;RSQ=0.5386;ERATE=0.0015;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134325575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9301;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134325729 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8224;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134325791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0253;AVGPOST=0.9990;RSQ=0.9881;ERATE=0.0003;THETA=0.0012;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134325947 rs56973159 T TC 7417 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0516;AVGPOST=0.9974;RSQ=0.9818;ERATE=0.0004;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134325954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134325961 . T TC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134325976 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.4039;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134326095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0255;AVGPOST=0.9985;RSQ=0.9747;ERATE=0.0006;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134326129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9133;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134326234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0056;AVGPOST=0.9977;RSQ=0.8582;ERATE=0.0003;THETA=0.0051;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134326452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6607;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134326516 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0180;AVGPOST=0.9986;RSQ=0.9710;ERATE=0.0004;THETA=0.0026;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134326574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134326634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134326730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2014;AVGPOST=0.9950;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 134326770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134326787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9231;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134326913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134327060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.532;LDAF=0.0044;AVGPOST=0.9958;RSQ=0.6370;ERATE=0.0007;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134327475 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.841;LDAF=0.0229;AVGPOST=0.9894;RSQ=0.8206;ERATE=0.0005;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134327559 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9134;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134327579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0103;AVGPOST=0.9968;RSQ=0.8828;ERATE=0.0005;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134327742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0143;AVGPOST=0.9994;RSQ=0.9806;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134327884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134327911 . CTGA C 1391 PASS INDEL;BAVGPOST=0.996;BRSQ=0.858;LDAF=0.0118;AVGPOST=0.9984;RSQ=0.9404;ERATE=0.0005;THETA=0.0015;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134327975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134328081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134328131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9340;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134328170 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7403;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134328201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9707;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134328210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134328223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.701;LDAF=0.0420;AVGPOST=0.9631;RSQ=0.6422;ERATE=0.0188;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134328449 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7986;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134328497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134328545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0004;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134328552 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0274;AVGPOST=0.9972;RSQ=0.9605;ERATE=0.0006;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134328621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134328634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134328666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134329341 . AG A 43293 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9995;AVGPOST=0.9990;RSQ=0.0854;ERATE=0.0004;THETA=0.0026;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 134329437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6531;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134329646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0960;AVGPOST=0.9983;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 134329709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1594;AVGPOST=0.9964;RSQ=0.9893;ERATE=0.0006;THETA=0.0002;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 134329794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134329971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9528;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=2081;AN=2184 GT:DS:GL:BD 0.95283884 1 1 134330004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134330108 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330163 . T TTTGTA 202 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5954;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0152;AVGPOST=0.9988;RSQ=0.9658;ERATE=0.0005;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134330261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7010;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134330332 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134330364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134330451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9994;AVGPOST=0.9988;RSQ=0.4271;ERATE=0.0003;THETA=0.0003;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 134330476 rs67804051 CCCTT C 53544 PASS INDEL;BAVGPOST=0.979;BRSQ=0.964;LDAF=0.7359;AVGPOST=0.9816;RSQ=0.9695;ERATE=0.0022;THETA=0.0003;AC=1617;AN=2184 GT:DS:GL:BD 0.74038464 1 1 134330483 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134330510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134330685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134330778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134330795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134330864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0703;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 134330938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1575;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 134331148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.584;LDAF=0.0121;AVGPOST=0.9848;RSQ=0.5206;ERATE=0.0049;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134331187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134331287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134331441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7712;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134331587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6767;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134331666 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0073;AVGPOST=0.9900;RSQ=0.4956;ERATE=0.0017;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134331781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9031;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134331814 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0215;AVGPOST=0.9959;RSQ=0.9325;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134331839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134331851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0079;AVGPOST=0.9977;RSQ=0.8835;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134332034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5758;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134332132 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0610;AVGPOST=0.9958;RSQ=0.9709;ERATE=0.0005;THETA=0.0013;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134332168 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134332465 . C CT 19 PASS INDEL;BAVGPOST=0.992;BRSQ=0.467;LDAF=0.0165;AVGPOST=0.9770;RSQ=0.4356;ERATE=0.0024;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134332581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.940;LDAF=0.0717;AVGPOST=0.9882;RSQ=0.9342;ERATE=0.0010;THETA=0.0005;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134332615 rs59646632 CCCTT C 7457 PASS INDEL;BAVGPOST=0.597;BRSQ=0.278;LDAF=0.5475;AVGPOST=0.6485;RSQ=0.3422;ERATE=0.0924;THETA=0.0006;AC=1200;AN=2184 GT:DS:GL:BD 0.54945058 1 1 134332617 . T TC 372 PASS INDEL;BAVGPOST=0.988;BRSQ=0.495;LDAF=0.0258;AVGPOST=0.9750;RSQ=0.6339;ERATE=0.0019;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134332694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5836;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134332739 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9716;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134332798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0165;AVGPOST=0.9994;RSQ=0.9832;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134332841 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134333026 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4058;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134333106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2691;AVGPOST=0.9963;RSQ=0.9925;ERATE=0.0004;THETA=0.0055;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134333354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134333394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8205;ERATE=0.0003;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134333395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5262;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134333556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8294;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134333666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7227;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134333701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134333772 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134333808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6570;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134333987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9769;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134334071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0617;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0010;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 134334077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.747;LDAF=0.0044;AVGPOST=0.9981;RSQ=0.8220;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134334342 . A AT 32 PASS INDEL;BAVGPOST=0.997;BRSQ=0.511;LDAF=0.0081;AVGPOST=0.9920;RSQ=0.6043;ERATE=0.0010;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134334401 . A AT 344 PASS INDEL;BAVGPOST=0.949;BRSQ=0.447;LDAF=0.0807;AVGPOST=0.8955;RSQ=0.4136;ERATE=0.0225;THETA=0.0004;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 134334416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5588;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134334596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5664;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134334705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134334857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7801;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134335018 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9151;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134335040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6215;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134335191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8502;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134335296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2652;AVGPOST=0.9909;RSQ=0.9827;ERATE=0.0004;THETA=0.0003;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 134335335 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134335427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0363;AVGPOST=0.9968;RSQ=0.9686;ERATE=0.0004;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134335470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0048;AVGPOST=0.9975;RSQ=0.7981;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134335548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134335552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7311;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134335553 . CTG C 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6409;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134335559 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6468;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134335684 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134335903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134335945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0054;AVGPOST=0.9952;RSQ=0.6518;ERATE=0.0014;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134336004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3694;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134336006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7336;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134336008 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0050;AVGPOST=0.9920;RSQ=0.4161;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134336129 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6219;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134336158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134336159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134336336 . CTT C 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134336399 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134336443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8529;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134336446 rs10713852 TC T 258 PASS INDEL;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0032;AVGPOST=0.9975;RSQ=0.6572;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134336545 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9648;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134336754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8601;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134336766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6800;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=1488;AN=2184 GT:DS:GL:BD 0.68131870 1 1 134336933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6796;AVGPOST=0.9974;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=1488;AN=2184 GT:DS:GL:BD 0.68131870 1 1 134336951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8129;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134337015 . CTA C 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134337031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6868;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134337065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0416;AVGPOST=0.9988;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134337108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1996;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 134337245 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134337372 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.561;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5281;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134337521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4336;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134337606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5756;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134337637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9734;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134337823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2508;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 134337868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134337873 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8118;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134338048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134338070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134338222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9814;AVGPOST=0.9985;RSQ=0.9690;ERATE=0.0003;THETA=0.0009;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 134338262 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2674;AVGPOST=0.9964;RSQ=0.9935;ERATE=0.0004;THETA=0.0037;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 134338335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134338339 . AC A 257 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8857;ERATE=0.0003;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134338392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134338404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.884;LDAF=0.0141;AVGPOST=0.9979;RSQ=0.9354;ERATE=0.0003;THETA=0.0026;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134338422 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7647;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134338434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0120;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134338460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0081;AVGPOST=0.9960;RSQ=0.8258;ERATE=0.0003;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134338543 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134338580 . TCAAGAATAAA T 214 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4697;ERATE=0.0006;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134338606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8930;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134338640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134338748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.909;LDAF=0.0145;AVGPOST=0.9961;RSQ=0.8980;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134338749 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8949;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134338773 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134338966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134339149 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2943;AVGPOST=0.9967;RSQ=0.9933;ERATE=0.0005;THETA=0.0009;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 134339199 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0080;AVGPOST=0.9954;RSQ=0.7768;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134339328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3777;AVGPOST=0.9971;RSQ=0.9951;ERATE=0.0004;THETA=0.0038;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134339333 rs113249135 A AAAT 57160 PASS INDEL;BAVGPOST=0.988;BRSQ=0.976;LDAF=0.3525;AVGPOST=0.9909;RSQ=0.9859;ERATE=0.0004;THETA=0.0006;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 134339522 . A AATT 30809 PASS INDEL;BAVGPOST=0.979;BRSQ=0.956;LDAF=0.3399;AVGPOST=0.9777;RSQ=0.9638;ERATE=0.0028;THETA=0.0005;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 134339526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0173;AVGPOST=0.9989;RSQ=0.9722;ERATE=0.0004;THETA=0.0020;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134339529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134339544 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3605;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=788;AN=2184 GT:DS:GL:BD 0.36080587 0 1 134339584 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134339609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3606;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0003;THETA=0.0008;AC=789;AN=2184 GT:DS:GL:BD 0.36126372 0 1 134339650 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8108;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134339661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2569;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 134339679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0165;AVGPOST=0.9988;RSQ=0.9718;ERATE=0.0004;THETA=0.0018;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134339782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8953;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134339795 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134339902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6293;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134339983 rs67352876 TTCTC T 30640 PASS INDEL;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.3539;AVGPOST=0.9885;RSQ=0.9823;ERATE=0.0008;THETA=0.0005;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 134340084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3676;AVGPOST=0.9833;RSQ=0.9749;ERATE=0.0023;THETA=0.0005;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 134340106 rs71790908 CCT C 23854 PASS INDEL;BAVGPOST=0.973;BRSQ=0.952;LDAF=0.3842;AVGPOST=0.9400;RSQ=0.9084;ERATE=0.0147;THETA=0.0005;AC=828;AN=2184 GT:DS:GL:BD 0.37912089 0 1 134340117 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.760;LDAF=0.0438;AVGPOST=0.9668;RSQ=0.6952;ERATE=0.0104;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134340132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0235;AVGPOST=0.9965;RSQ=0.9395;ERATE=0.0005;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134340321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0162;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134340527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134340672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134340730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5071;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134340908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6578;ERATE=0.0003;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134340966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134340978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6584;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134341005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5921;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134341041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3735;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=817;AN=2184 GT:DS:GL:BD 0.37408423 0 1 134341062 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3613;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0005;THETA=0.0003;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 134341144 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8012;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134341151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134341213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.8838;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134341414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8800;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134341462 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7995;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134341572 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134341600 . T TG 12567 PASS INDEL;BAVGPOST=0.967;BRSQ=0.939;LDAF=0.5612;AVGPOST=0.9474;RSQ=0.9219;ERATE=0.0127;THETA=0.0002;AC=1237;AN=2184 GT:DS:GL:BD 0.56639194 1 1 134341622 rs34802488 G GC 78223 PASS INDEL;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.5857;AVGPOST=0.9953;RSQ=0.9926;ERATE=0.0004;THETA=0.0004;AC=1278;AN=2184 GT:DS:GL:BD 0.58516484 1 1 134341623 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134341686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0525;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 134341733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134341890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134341891 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3780;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0002;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134342001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0526;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 134342056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9008;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0003;AC=1967;AN=2184 GT:DS:GL:BD 0.90064102 1 1 134342084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8677;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134342227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3777;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0004;THETA=0.0001;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134342415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0299;AVGPOST=0.9993;RSQ=0.9904;ERATE=0.0003;THETA=0.0002;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134342474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1421;AVGPOST=0.9978;RSQ=0.9931;ERATE=0.0006;THETA=0.0007;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134342479 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.5199;AVGPOST=0.9994;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 134342588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9504;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134342611 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0574;AVGPOST=0.9993;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 134342678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0104;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134342802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134342806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134342916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134343024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0183;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134343041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134343087 . CA C 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6151;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134343199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3782;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134343292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5198;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0004;THETA=0.0006;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 134343333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134343367 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134343371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0301;AVGPOST=0.9991;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134343493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.795;LDAF=0.0615;AVGPOST=0.9746;RSQ=0.8450;ERATE=0.0006;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134343514 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134343602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134343608 . G GA 307 PASS INDEL;BAVGPOST=0.992;BRSQ=0.580;LDAF=0.0129;AVGPOST=0.9849;RSQ=0.5368;ERATE=0.0032;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134343750 . A AT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134343769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.962;LDAF=0.8953;AVGPOST=0.9910;RSQ=0.9666;ERATE=0.0014;THETA=0.0004;AC=1962;AN=2184 GT:DS:GL:BD 0.89835167 1 1 134343776 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6019;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134343785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.978;LDAF=0.5193;AVGPOST=0.9929;RSQ=0.9887;ERATE=0.0012;THETA=0.0003;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 134343881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5587;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134343933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1700;AVGPOST=0.9967;RSQ=0.9909;ERATE=0.0007;THETA=0.0007;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 134343971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.922;LDAF=0.0143;AVGPOST=0.9957;RSQ=0.8758;ERATE=0.0007;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134344027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1418;AVGPOST=0.9983;RSQ=0.9942;ERATE=0.0004;THETA=0.0002;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134344032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0059;AVGPOST=0.9953;RSQ=0.6946;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134344065 . T TTATG 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4126;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134344195 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0281;AVGPOST=0.9952;RSQ=0.9330;ERATE=0.0005;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134344213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.446;LDAF=0.0045;AVGPOST=0.9936;RSQ=0.4849;ERATE=0.0006;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134344238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.821;LDAF=0.0637;AVGPOST=0.9726;RSQ=0.8365;ERATE=0.0008;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 134344453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0070;AVGPOST=0.9977;RSQ=0.8784;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134344457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6864;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134344518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134344629 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5489;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134344792 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5710;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134344872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9476;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134344974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9413;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134345008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9339;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134345026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6827;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134345108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2971;AVGPOST=0.9971;RSQ=0.9943;ERATE=0.0006;THETA=0.0004;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 134345169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8626;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134345199 . C CAT 187 PASS INDEL;BAVGPOST=0.995;BRSQ=0.584;LDAF=0.0116;AVGPOST=0.9866;RSQ=0.5102;ERATE=0.0039;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134345237 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5565;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134345261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3781;AVGPOST=0.9939;RSQ=0.9900;ERATE=0.0016;THETA=0.0003;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 134345283 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0307;AVGPOST=0.9988;RSQ=0.9833;ERATE=0.0004;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134345334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9484;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134345368 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134345613 . T TA 467 PASS INDEL;BAVGPOST=0.996;BRSQ=0.632;LDAF=0.0071;AVGPOST=0.9965;RSQ=0.8215;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134345621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3790;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 134345681 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1088;AVGPOST=0.9990;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 134345739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3783;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 134345758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1422;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134345830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134345853 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134345920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2956;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 134346044 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134346100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134346120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134346289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134346313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1417;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0001;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134346321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0247;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134346350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2969;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0009;THETA=0.0004;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 134346592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134346614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1417;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134346652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0866;AVGPOST=0.9966;RSQ=0.9842;ERATE=0.0007;THETA=0.0002;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 134346662 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8974;AVGPOST=0.9982;RSQ=0.9931;ERATE=0.0005;THETA=0.0005;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 134346701 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5443;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134346837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 134346895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6938;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134346984 . A AG 96 PASS INDEL;BAVGPOST=0.959;BRSQ=0.380;LDAF=0.0221;AVGPOST=0.9825;RSQ=0.6871;ERATE=0.0011;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134347125 . G GA 2073 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0177;AVGPOST=0.9989;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134347127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0344;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134347228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9548;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134347282 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5268;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134347284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5516;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134347308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7841;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 134347406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0307;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134347458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134347464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0368;AVGPOST=0.9991;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134347509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134347524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0039;AVGPOST=0.9980;RSQ=0.7920;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134347641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6404;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134347773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.5955;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134347783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4506;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134347920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8476;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134347952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9262;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134348005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7834;AVGPOST=0.9954;RSQ=0.9894;ERATE=0.0005;THETA=0.0004;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 134348031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0307;AVGPOST=0.9996;RSQ=0.9948;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134348054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9991;RSQ=0.9890;ERATE=0.0003;THETA=0.0012;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134348098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6583;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134348244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7197;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134348285 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4392;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348405 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6091;ERATE=0.0005;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134348416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134348431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8109;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134348441 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348568 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9004;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134348638 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0077;AVGPOST=0.9988;RSQ=0.9389;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134348817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3712;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134348853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7668;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134348863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9791;ERATE=0.0004;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134348893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0380;AVGPOST=0.9991;RSQ=0.9914;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134349049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9737;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134349055 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0551;AVGPOST=0.9990;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 134349086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9488;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134349092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9776;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134349099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0211;AVGPOST=0.9975;RSQ=0.9532;ERATE=0.0004;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134349105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134349200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0078;AVGPOST=0.9991;RSQ=0.9605;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134349221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9537;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134349225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5966;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349252 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4943;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349256 . TA T 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0958;AVGPOST=0.9988;RSQ=0.9958;ERATE=0.0003;THETA=0.0018;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134349358 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0425;AVGPOST=0.9995;RSQ=0.9949;ERATE=0.0003;THETA=0.0007;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134349435 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6980;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0164;AVGPOST=0.9984;RSQ=0.9648;ERATE=0.0003;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134349583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134349596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7687;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134349723 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1275;AVGPOST=0.9976;RSQ=0.9915;ERATE=0.0003;THETA=0.0008;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134349971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134349995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134350018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0125;AVGPOST=0.9987;RSQ=0.9656;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134350098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1387;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0008;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 134350100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134350215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0094;AVGPOST=0.9976;RSQ=0.9040;ERATE=0.0008;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134350219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9561;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134350251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0178;AVGPOST=0.9978;RSQ=0.9401;ERATE=0.0007;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134350312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0407;AVGPOST=0.9965;RSQ=0.9698;ERATE=0.0004;THETA=0.0052;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134350681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0423;AVGPOST=0.9989;RSQ=0.9898;ERATE=0.0004;THETA=0.0007;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134350768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350777 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8954;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134350789 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9532;ERATE=0.0003;THETA=0.0024;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134350853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8100;ERATE=0.0003;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134350872 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7514;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134350873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7623;ERATE=0.0003;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134350885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7354;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350902 . AT A 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4920;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134350975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6972;ERATE=0.0004;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134351009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7468;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134351105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2530;AVGPOST=0.9927;RSQ=0.9890;ERATE=0.0004;THETA=0.0013;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 134351233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134351403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6308;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134351404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6730;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134351513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0004;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134351633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0331;AVGPOST=0.9995;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134351672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9998;RSQ=0.9976;ERATE=0.0003;THETA=0.0028;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134351807 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3449;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0004;THETA=0.0006;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 134351811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2897;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0003;THETA=0.0010;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 134351824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8918;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134351849 rs79116459 CT C 6230 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0335;AVGPOST=0.9984;RSQ=0.9821;ERATE=0.0006;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134351881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1869;AVGPOST=0.9977;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 134351999 . TA T 124 PASS INDEL;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0051;AVGPOST=0.9974;RSQ=0.8171;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134352055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134352110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7167;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134352162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.1879;AVGPOST=0.9970;RSQ=0.9922;ERATE=0.0005;THETA=0.0009;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 134352239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4918;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0006;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 134352318 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0038;AVGPOST=0.9981;RSQ=0.7693;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134352320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134352334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134352470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9825;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134352551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0077;AVGPOST=0.9989;RSQ=0.9507;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134352616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0124;AVGPOST=0.9980;RSQ=0.9418;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134352626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4928;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0011;THETA=0.0014;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 134352655 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4765;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134352804 rs35347640 T TA 34543 PASS INDEL;BAVGPOST=0.967;BRSQ=0.946;LDAF=0.4957;AVGPOST=0.9391;RSQ=0.9080;ERATE=0.0158;THETA=0.0065;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 134352887 rs34450782 C CA 48550 PASS INDEL;BAVGPOST=0.975;BRSQ=0.971;LDAF=0.4754;AVGPOST=0.9702;RSQ=0.9581;ERATE=0.0097;THETA=0.0025;AC=1041;AN=2184 GT:DS:GL:BD 0.47664836 0 1 134353089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.6985;ERATE=0.0002;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134353162 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.4883;AVGPOST=0.9912;RSQ=0.9875;ERATE=0.0015;THETA=0.0123;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 134353204 . CCCT C 15 PASS INDEL;BAVGPOST=0.997;BRSQ=0.666;LDAF=0.0090;AVGPOST=0.9884;RSQ=0.4798;ERATE=0.0033;THETA=0.0149;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134353345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0196;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134353427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.964;LDAF=0.0879;AVGPOST=0.9928;RSQ=0.9655;ERATE=0.0007;THETA=0.0138;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 134353448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0045;AVGPOST=0.9965;RSQ=0.7406;ERATE=0.0002;THETA=0.0159;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134353626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4885;ERATE=0.0004;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134353697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4432;ERATE=0.0004;THETA=0.0135;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134353724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7642;ERATE=0.0012;THETA=0.0077;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134353745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9351;ERATE=0.0003;THETA=0.0149;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134353749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7129;ERATE=0.0005;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134353756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134353819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0226;AVGPOST=0.9994;RSQ=0.9887;ERATE=0.0002;THETA=0.0191;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134354002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9281;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134354172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0143;AVGPOST=0.9992;RSQ=0.9755;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134354306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0002;THETA=0.0045;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134354438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134354453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0609;AVGPOST=0.9964;RSQ=0.9798;ERATE=0.0002;THETA=0.0068;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 134354489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9778;ERATE=0.0002;THETA=0.0085;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134354500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134354504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134354542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8785;ERATE=0.0004;THETA=0.0076;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134354579 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6948;ERATE=0.0003;THETA=0.0058;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134354591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134354710 . T TC 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0005;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134354776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8614;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134354815 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0002;THETA=0.0034;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134354956 rs72447251 AGAGTCATTCAT A 1724 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0082;AVGPOST=0.9976;RSQ=0.8709;ERATE=0.0005;THETA=0.0047;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134354970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7071;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134355081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.953;LDAF=0.1372;AVGPOST=0.9835;RSQ=0.9525;ERATE=0.0007;THETA=0.0097;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 134355086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1950;AVGPOST=0.9947;RSQ=0.9866;ERATE=0.0005;THETA=0.0005;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 134355089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134355092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134355129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9562;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134355161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9699;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134355198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9763;ERATE=0.0003;THETA=0.0022;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134355245 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3566;AVGPOST=0.9958;RSQ=0.9931;ERATE=0.0007;THETA=0.0002;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 134355310 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7414;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134355403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134355481 . T TAA 158 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5908;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134355486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134355513 . AT A 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5400;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7003;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134355543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134355547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355558 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.8731;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134355583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8493;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134355648 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134355733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134355843 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0247;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134355875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0222;AVGPOST=0.9984;RSQ=0.9698;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134355885 rs34437268 G GC 17306 PASS INDEL;BAVGPOST=0.971;BRSQ=0.955;LDAF=0.3282;AVGPOST=0.9795;RSQ=0.9700;ERATE=0.0007;THETA=0.0004;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 134355919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.953;LDAF=0.3283;AVGPOST=0.9777;RSQ=0.9680;ERATE=0.0005;THETA=0.0003;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 134355921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.3298;AVGPOST=0.9814;RSQ=0.9731;ERATE=0.0003;THETA=0.0002;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 134355922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0105;AVGPOST=0.9986;RSQ=0.9461;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134356032 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134356056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7202;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134356107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6948;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134356243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134356250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0216;AVGPOST=0.9988;RSQ=0.9758;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134356286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5590;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134356308 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5298;AVGPOST=0.9938;RSQ=0.9899;ERATE=0.0004;THETA=0.0003;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 134356342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9990;RSQ=0.9515;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134356355 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134356383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134356452 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.854;LDAF=0.0141;AVGPOST=0.9959;RSQ=0.8819;ERATE=0.0005;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134356626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7746;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134356743 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5501;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134356784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5344;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0006;THETA=0.0004;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 134356804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3537;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0006;THETA=0.0001;AC=770;AN=2184 GT:DS:GL:BD 0.35256410 0 1 134356873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0581;AVGPOST=0.9989;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 134356893 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134356925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0417;AVGPOST=0.9989;RSQ=0.9912;ERATE=0.0002;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134356928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4418;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0006;THETA=0.0002;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 134356973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6778;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134357040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134357063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9389;AVGPOST=0.9994;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 134357164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5901;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134357187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134357191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9454;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134357221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0055;AVGPOST=0.9985;RSQ=0.8930;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134357240 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5943;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134357450 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0012;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134357476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7206;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134357500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0890;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 134357648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8743;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134357685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4646;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0007;THETA=0.0006;AC=1017;AN=2184 GT:DS:GL:BD 0.46565935 0 1 134357760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0060;AVGPOST=0.9977;RSQ=0.8404;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134357764 . T TC 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134357873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0277;AVGPOST=0.9986;RSQ=0.9782;ERATE=0.0005;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134357875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7783;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134357907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0843;AVGPOST=0.9938;RSQ=0.9691;ERATE=0.0004;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134357989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9985;RSQ=0.9469;ERATE=0.0003;THETA=0.0001;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134358040 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134358059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.6206;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134358063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0176;AVGPOST=0.9981;RSQ=0.9641;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134358085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9993;RSQ=0.9431;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134358102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0073;AVGPOST=0.9970;RSQ=0.8641;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134358372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0945;AVGPOST=0.9983;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 134358448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3526;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=767;AN=2184 GT:DS:GL:BD 0.35119048 0 1 134358476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7929;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134358666 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6612;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358712 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4404;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=960;AN=2184 GT:DS:GL:BD 0.43956044 0 1 134358843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358919 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6915;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134358928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134359090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4930;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134359121 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0624;AVGPOST=0.9932;RSQ=0.9563;ERATE=0.0006;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 134359349 rs66757893 ATAT A 28802 PASS INDEL;BAVGPOST=0.927;BRSQ=0.875;LDAF=0.4362;AVGPOST=0.9069;RSQ=0.8652;ERATE=0.0089;THETA=0.0003;AC=910;AN=2184 GT:DS:GL:BD 0.41666666 0 1 134359376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134359434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.950;LDAF=0.0744;AVGPOST=0.9947;RSQ=0.9714;ERATE=0.0005;THETA=0.0003;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 134359642 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134359725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4605;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0006;THETA=0.0004;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 134359754 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0042;AVGPOST=0.9967;RSQ=0.7095;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134359783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5864;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134359858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9388;AVGPOST=0.9989;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 134360055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7380;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134360095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6379;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134360097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7109;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134360211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9983;RSQ=0.9410;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134360212 rs34008071 G GT 20702 PASS INDEL;BAVGPOST=0.970;BRSQ=0.950;LDAF=0.3385;AVGPOST=0.9783;RSQ=0.9662;ERATE=0.0029;THETA=0.0003;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 134360248 . C CT 195 PASS INDEL;BAVGPOST=0.982;BRSQ=0.543;LDAF=0.0323;AVGPOST=0.9596;RSQ=0.4788;ERATE=0.0102;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134360257 . T TC 237 PASS INDEL;BAVGPOST=0.998;BRSQ=0.713;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7078;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134360266 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134360289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134360378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7515;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134360558 . GTTC G 246 PASS INDEL;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0070;AVGPOST=0.9962;RSQ=0.8104;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134360693 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0180;AVGPOST=0.9968;RSQ=0.9284;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134360696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.9965;AVGPOST=0.9994;RSQ=0.9220;ERATE=0.0004;THETA=0.0003;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 134360825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9584;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134360909 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134360986 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0002;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134361015 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.7942;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134361058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8809;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134361104 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134361154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134361188 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134361254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7262;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134361331 rs56196963 ATTGTTGGATTTT A 84079 PASS INDEL;BAVGPOST=0.981;BRSQ=0.969;LDAF=0.4532;AVGPOST=0.9739;RSQ=0.9636;ERATE=0.0037;THETA=0.0002;AC=1000;AN=2184 GT:DS:GL:BD 0.45787546 0 1 134361395 rs55633508 GT G 20353 PASS INDEL;BAVGPOST=0.970;BRSQ=0.955;LDAF=0.4413;AVGPOST=0.9758;RSQ=0.9662;ERATE=0.0015;THETA=0.0002;AC=977;AN=2184 GT:DS:GL:BD 0.44734433 0 1 134361410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0639;AVGPOST=0.9988;RSQ=0.9912;ERATE=0.0005;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 134361586 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9388;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 134361598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134361643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0266;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134361772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7600;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134361773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134361800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0265;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0002;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134361809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134362071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7900;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134362159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134362177 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134362249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2942;AVGPOST=0.9965;RSQ=0.9938;ERATE=0.0004;THETA=0.0006;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 134362276 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134362428 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134362455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0117;AVGPOST=0.9962;RSQ=0.8664;ERATE=0.0006;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134362572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134362626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7258;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134362650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8591;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134362681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7178;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134362821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9177;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134363072 . T TC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134363287 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134363345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134363440 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134363577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7853;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134363641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7603;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134363733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134363843 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8605;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134363882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6818;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134364015 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9797;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134364045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134364057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0034;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134364155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134364189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8755;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134364307 . TC T 245 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7307;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134364320 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134364430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7238;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134364683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134364811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.527;LDAF=0.0077;AVGPOST=0.9889;RSQ=0.4503;ERATE=0.0037;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134364819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0298;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134364871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5375;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0006;THETA=0.0003;AC=1175;AN=2184 GT:DS:GL:BD 0.53800368 1 1 134364939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134364980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8383;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134364981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.9086;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134364983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5307;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134365088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134365108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8122;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134365109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9596;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134365135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5369;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 134365194 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0043;AVGPOST=0.9977;RSQ=0.7948;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134365206 . T TC 17011 PASS INDEL;BAVGPOST=0.967;BRSQ=0.943;LDAF=0.5292;AVGPOST=0.9819;RSQ=0.9728;ERATE=0.0011;THETA=0.0002;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 134365230 rs11432025 C CT 49836 PASS INDEL;BAVGPOST=0.972;BRSQ=0.952;LDAF=0.5298;AVGPOST=0.9836;RSQ=0.9743;ERATE=0.0013;THETA=0.0007;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 134365234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7023;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134365332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7284;ERATE=0.0012;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134365344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8569;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134365409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4661;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 134365419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134365705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7679;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134365754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134365899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7571;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134366040 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134366099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4661;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 134366119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.9961;AVGPOST=0.9984;RSQ=0.8330;ERATE=0.0004;THETA=0.0002;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 134366145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4663;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 134366178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0402;AVGPOST=0.9993;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134366180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134366189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1330;AVGPOST=0.9954;RSQ=0.9839;ERATE=0.0005;THETA=0.0012;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 134366264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9764;ERATE=0.0003;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134366295 rs111254951 AAAACAAC A 75827 PASS INDEL;BAVGPOST=0.974;BRSQ=0.951;LDAF=0.4995;AVGPOST=0.9439;RSQ=0.9145;ERATE=0.0288;THETA=0.0035;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 134366336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6301;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134366405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9752;ERATE=0.0003;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134366484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9695;ERATE=0.0003;THETA=0.0039;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134366569 . TGA T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5305;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134366716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8403;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134366725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1114;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 134366759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9074;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134366837 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5487;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 134366866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134366966 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1167;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0007;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 134367008 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6695;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5833;ERATE=0.0003;THETA=0.0099;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1049;AVGPOST=0.9980;RSQ=0.9916;ERATE=0.0004;THETA=0.0004;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134367315 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.5443;AVGPOST=0.9924;RSQ=0.9899;ERATE=0.0007;THETA=0.0004;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 134367350 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.1840;AVGPOST=0.9950;RSQ=0.9868;ERATE=0.0004;THETA=0.0034;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 134367392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9793;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134367440 . AG A 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4453;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367504 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6102;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6097;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367592 . AC A 371 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134367653 . CA C 1468 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9861;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134367654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5457;AVGPOST=0.9954;RSQ=0.9932;ERATE=0.0008;THETA=0.0004;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 134367666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134367679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4532;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0007;THETA=0.0002;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 134367756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134367807 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134367875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8927;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134367883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0913;AVGPOST=0.9984;RSQ=0.9929;ERATE=0.0003;THETA=0.0002;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 134367917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9103;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134367967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6325;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134368072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5582;AVGPOST=0.9975;RSQ=0.9962;ERATE=0.0006;THETA=0.0004;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 134368083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134368216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134368236 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134368356 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8731;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134368414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134368435 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134368568 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8839;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134368601 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134368707 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134368722 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0096;AVGPOST=0.9975;RSQ=0.8917;ERATE=0.0008;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134368849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134368855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4677;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=1020;AN=2184 GT:DS:GL:BD 0.46703297 0 1 134368878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134368934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0493;AVGPOST=0.9983;RSQ=0.9863;ERATE=0.0004;THETA=0.0005;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 134369057 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6040;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134369076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.8093;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134369147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134369263 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134369315 . CA C 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8461;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134369328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6450;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134369504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6822;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134369645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6819;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134369651 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0663;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 134369670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6983;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134369696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134369715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134369741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0119;AVGPOST=0.9973;RSQ=0.9142;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134369822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9847;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134369848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9427;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134369898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134369950 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5380;AVGPOST=0.9964;RSQ=0.9953;ERATE=0.0007;THETA=0.0004;AC=1174;AN=2184 GT:DS:GL:BD 0.53754580 1 1 134370007 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9690;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134370041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7777;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134370054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134370055 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1360;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 134370384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0129;AVGPOST=0.9992;RSQ=0.9761;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134370441 rs5778580 C CT 8161 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9995;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134370451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7283;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134370483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1746;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 134370497 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7399;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134370542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134370659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0004;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134370689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0663;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 134370744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134370824 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134370926 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134370935 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0168;AVGPOST=0.9984;RSQ=0.9672;ERATE=0.0004;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134370943 rs3078532 GTCCT G 27051 PASS INDEL;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.1596;AVGPOST=0.9965;RSQ=0.9900;ERATE=0.0004;THETA=0.0008;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 134371002 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8086;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134371049 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8743;ERATE=0.0003;THETA=0.0027;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134371154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0163;AVGPOST=0.9990;RSQ=0.9720;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134371274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0387;AVGPOST=0.9990;RSQ=0.9899;ERATE=0.0004;THETA=0.0006;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134371358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5399;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=1179;AN=2184 GT:DS:GL:BD 0.53983516 1 1 134371419 . CA C 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134371459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1452;AVGPOST=0.9967;RSQ=0.9914;ERATE=0.0005;THETA=0.0003;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 134371479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0121;AVGPOST=0.9988;RSQ=0.9659;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134371509 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7034;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134371547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0593;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 134371733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134371831 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134371833 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134371853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9251;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134371945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134372006 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8685;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134372065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7967;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134372087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134372146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9616;ERATE=0.0003;THETA=0.0021;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134372162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6839;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134372226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9653;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134372233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134372280 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134372307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9359;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134372359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0600;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134372486 . TG T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134372612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0009;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134372623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9198;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134372710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0253;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0003;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134372799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4864;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134372896 . AG A 1654 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9992;RSQ=0.9721;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134372900 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134372964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1979;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0002;THETA=0.0005;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 134373041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0421;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0002;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134373058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373091 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0002;THETA=0.0024;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134373339 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4154;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373483 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5574;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134373484 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8889;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134373494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0601;AVGPOST=0.9993;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134373565 . C CG 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1982;AVGPOST=0.9979;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 134373596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2004;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 134373688 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7148;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134373751 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134373838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.7273;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134374158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134374163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8888;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134374191 rs4987311 CA C 2195 PASS INDEL;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0423;AVGPOST=0.9993;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134374242 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8246;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134374354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134374396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2399;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0002;THETA=0.0003;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 134374536 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134374572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6918;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134374640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134374775 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0599;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0002;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134374814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134374892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6796;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134374909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.9087;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134374969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.8009;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134374993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134375049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0608;AVGPOST=0.9993;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134375101 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1444;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134375143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0257;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134375243 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0600;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0002;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134375259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2401;AVGPOST=0.9967;RSQ=0.9928;ERATE=0.0012;THETA=0.0003;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 134375288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0078;AVGPOST=0.9987;RSQ=0.9485;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134375317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1598;AVGPOST=0.9991;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 134375397 . TC T 33 PASS INDEL;BAVGPOST=0.943;BRSQ=0.406;LDAF=0.0322;AVGPOST=0.9641;RSQ=0.5909;ERATE=0.0026;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134375423 rs59095379 CT C 13119 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1988;AVGPOST=0.9905;RSQ=0.9778;ERATE=0.0015;THETA=0.0006;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 134375424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7716;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134375468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9817;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134375519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134375569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0601;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134375681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134375751 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134375760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8731;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134375816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6353;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134375867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1600;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 134375908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0002;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134375931 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7799;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134375965 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9065;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134375998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0112;AVGPOST=0.9987;RSQ=0.9634;ERATE=0.0002;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134376041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0598;AVGPOST=0.9989;RSQ=0.9916;ERATE=0.0004;THETA=0.0003;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134376047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5462;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134376048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9251;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134376156 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8830;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134376160 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2987;AVGPOST=0.9954;RSQ=0.9923;ERATE=0.0007;THETA=0.0004;AC=650;AN=2184 GT:DS:GL:BD 0.29761904 0 1 134376405 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9249;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134376541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2398;AVGPOST=0.9969;RSQ=0.9937;ERATE=0.0012;THETA=0.0003;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 134376613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9769;ERATE=0.0002;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134376630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134376825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8810;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134376877 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2990;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0004;THETA=0.0043;AC=651;AN=2184 GT:DS:GL:BD 0.29807693 0 1 134376921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7897;AVGPOST=0.9976;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=1724;AN=2184 GT:DS:GL:BD 0.78937727 1 1 134376991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134377014 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0002;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134377019 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134377036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1380;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 134377184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134377272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8874;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134377622 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=1.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 134377681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0142;AVGPOST=0.9987;RSQ=0.9577;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134377700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9088;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134377961 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5730;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 134378118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9383;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134378284 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1357;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 134378287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134378293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7957;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134378331 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0155;AVGPOST=0.9987;RSQ=0.9658;ERATE=0.0003;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134378336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134378352 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134378401 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9115;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134378547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134378638 rs111623884 GT G 23923 PASS INDEL;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1737;AVGPOST=0.9936;RSQ=0.9843;ERATE=0.0016;THETA=0.0003;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 134378679 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134378725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0131;AVGPOST=0.9989;RSQ=0.9657;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134378772 . AAT A 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5994;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134378822 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6889;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134378839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6167;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134378858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134378910 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5796;AVGPOST=0.9964;RSQ=0.9942;ERATE=0.0007;THETA=0.0002;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 134378941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7140;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134378966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4711;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134378973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0093;AVGPOST=0.9980;RSQ=0.9086;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134379025 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134379059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6428;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134379200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5946;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134379203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5768;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134379204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134379359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134379365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9678;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134379476 . T TG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134379502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134379583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2184;AVGPOST=0.9971;RSQ=0.9942;ERATE=0.0005;THETA=0.0005;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 134379718 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6502;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134379765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.904;LDAF=0.0305;AVGPOST=0.9952;RSQ=0.9407;ERATE=0.0004;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134379803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5804;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134379867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7492;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134379911 . C CTCCTCACACAGG 2020 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134380019 . T TCC 366 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7487;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134380020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.788;LDAF=0.0116;AVGPOST=0.9938;RSQ=0.8181;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134380087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1724;AVGPOST=0.9960;RSQ=0.9894;ERATE=0.0004;THETA=0.0008;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 134380188 . TA T 2852 PASS INDEL;BAVGPOST=0.983;BRSQ=0.959;LDAF=0.2158;AVGPOST=0.9860;RSQ=0.9733;ERATE=0.0009;THETA=0.0003;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 134380200 . AG A 22008 PASS INDEL;BAVGPOST=0.987;BRSQ=0.968;LDAF=0.2154;AVGPOST=0.9945;RSQ=0.9882;ERATE=0.0006;THETA=0.0004;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 134380204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0028;AVGPOST=0.9954;RSQ=0.3996;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8336;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134380283 . TG T 245 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5756;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8196;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134380372 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.958;LDAF=0.0740;AVGPOST=0.9959;RSQ=0.9788;ERATE=0.0004;THETA=0.0005;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 134380415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0052;AVGPOST=0.9994;RSQ=0.9464;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134380504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5287;AVGPOST=0.9960;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 134380522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0082;AVGPOST=0.9974;RSQ=0.8886;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134380568 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4245;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9622;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134380689 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134380775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134380804 rs112754910 G GC 9170 PASS INDEL;BAVGPOST=0.993;BRSQ=0.974;LDAF=0.1038;AVGPOST=0.9979;RSQ=0.9911;ERATE=0.0004;THETA=0.0005;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 134380926 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9732;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134380985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134381072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134381175 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0026;AVGPOST=0.9996;RSQ=0.9541;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134381182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8070;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134381205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9986;RSQ=0.9631;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134381212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9981;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134381236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134381245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134381363 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6213;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134381431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9649;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134381482 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0078;AVGPOST=0.9997;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134381612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134381630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5729;AVGPOST=0.9957;RSQ=0.9938;ERATE=0.0005;THETA=0.0003;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 134381684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134381721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5721;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0005;THETA=0.0003;AC=1250;AN=2184 GT:DS:GL:BD 0.57234430 1 1 134381803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134381870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6302;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134381905 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7175;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134381981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1035;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 134381989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9409;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134382133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134382158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134382180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0179;AVGPOST=0.9989;RSQ=0.9781;ERATE=0.0005;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134382181 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5992;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134382211 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6598;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134382223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134382378 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7969;ERATE=0.0003;THETA=0.0034;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134382454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0101;AVGPOST=0.9991;RSQ=0.9609;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134382467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134382487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8765;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134382530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134382609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134382909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134382938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8070;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134382956 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134383024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134383064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134383117 rs67000623 G GT 182 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7797;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134383141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9832;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134383201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7251;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134383500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134383518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7651;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134383553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9636;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134383656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0002;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134383667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8088;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134383686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5077;AVGPOST=0.9977;RSQ=0.9964;ERATE=0.0006;THETA=0.0006;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134383714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0506;AVGPOST=0.9991;RSQ=0.9926;ERATE=0.0002;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134383733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9676;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134383858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134383928 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134383979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134384058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9074;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134384088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6699;AVGPOST=0.9928;RSQ=0.9884;ERATE=0.0006;THETA=0.0003;AC=1466;AN=2184 GT:DS:GL:BD 0.67124540 1 1 134384178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0176;AVGPOST=0.9988;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134384244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134384327 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0150;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0002;THETA=0.0002;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134384399 . TC T 509 PASS INDEL;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7653;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134384477 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134384491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134384579 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0002;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134384594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134384611 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7280;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134384621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9446;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134384672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134384723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5075;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0008;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134384791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5073;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134384968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9661;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134385055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9664;ERATE=0.0002;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134385066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134385128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0002;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134385146 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5080;AVGPOST=0.9984;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 134385201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134385326 . G GC 1408 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9684;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134385334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9501;ERATE=0.0002;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134385460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5083;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 134385471 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6582;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134385515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134385610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134385696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134385759 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.960;LDAF=0.2388;AVGPOST=0.9954;RSQ=0.9911;ERATE=0.0004;THETA=0.0003;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 134385817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5035;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134385821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134385923 . TG T 624 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9984;RSQ=0.9264;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134385967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134385989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134386003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5070;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134386012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134386183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6338;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134386241 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134386252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3195;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134386340 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8007;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134386414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.854;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9433;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134386491 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0096;AVGPOST=0.9989;RSQ=0.9473;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134386563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134386653 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134386679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134386696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5071;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134386731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134386866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134386888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134387078 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5109;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9160;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134387116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.7137;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134387276 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0167;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0002;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134387317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0398;AVGPOST=0.9979;RSQ=0.9796;ERATE=0.0003;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 134387320 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387323 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.7324;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0096;AVGPOST=0.9978;RSQ=0.9045;ERATE=0.0002;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134387483 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1326;AVGPOST=0.9980;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134387525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134387601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9997;RSQ=0.9401;ERATE=0.0002;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134387617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134387660 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9321;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134387680 . A ACTGGGT 692 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0105;AVGPOST=0.9989;RSQ=0.9624;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134387870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134387982 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134387988 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134388144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4718;AVGPOST=0.9988;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=1029;AN=2184 GT:DS:GL:BD 0.47115386 0 1 134388536 . TATTA T 160 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7249;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134388709 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134388736 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7653;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134389033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134389330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5919;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134389350 . G GA 25117 PASS INDEL;BAVGPOST=0.989;BRSQ=0.987;LDAF=0.4748;AVGPOST=0.9925;RSQ=0.9917;ERATE=0.0006;THETA=0.0003;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 134389368 rs11448328 A AT 75716 PASS INDEL;BAVGPOST=0.989;BRSQ=0.987;LDAF=0.4767;AVGPOST=0.9981;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=1041;AN=2184 GT:DS:GL:BD 0.47664836 0 1 134389370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5309;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134389462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7327;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134389609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8280;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134389683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134389717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134389944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0057;AVGPOST=0.9985;RSQ=0.9071;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134389961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.980;LDAF=0.4622;AVGPOST=0.9711;RSQ=0.9689;ERATE=0.0030;THETA=0.0005;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 134390010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.9927;AVGPOST=0.9982;RSQ=0.8861;ERATE=0.0005;THETA=0.0002;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 134390011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134390079 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7205;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=1575;AN=2184 GT:DS:GL:BD 0.72115386 1 1 134390583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1901;AVGPOST=0.9969;RSQ=0.9929;ERATE=0.0006;THETA=0.0006;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 134390627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134390629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7297;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 134390739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.539;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6885;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134390759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6387;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134390771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134390808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7882;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134390938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9986;RSQ=0.9514;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134390977 . C CT 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5871;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134391201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134391303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0073;AVGPOST=0.9978;RSQ=0.8906;ERATE=0.0004;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134391425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9702;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134391426 . T TC 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134391463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134391493 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134391494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8410;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134391529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7261;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=1587;AN=2184 GT:DS:GL:BD 0.72664833 1 1 134391540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134391624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4698;AVGPOST=0.9990;RSQ=0.9987;ERATE=0.0004;THETA=0.0010;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 134391667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6491;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134391932 rs71843916 AAG A 52408 PASS INDEL;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.7222;AVGPOST=0.9718;RSQ=0.9545;ERATE=0.0082;THETA=0.0005;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 134391990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134392107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0755;AVGPOST=0.9995;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 134392152 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9537;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134392233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4765;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134392428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7605;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134392444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6280;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134392460 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6753;ERATE=0.0003;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134392554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134392567 . G GT 445 PASS INDEL;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8042;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134392617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134392662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8517;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134392678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134392833 . GAAT G 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4737;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134392957 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7807;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134393018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7089;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134393077 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5522;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134393238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134393326 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8128;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134393381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3172;AVGPOST=0.9989;RSQ=0.9987;ERATE=0.0002;THETA=0.0004;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 134393383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134393462 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9161;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134393599 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7117;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134393861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9620;ERATE=0.0002;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134393983 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1323;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134394078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8721;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134394166 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134394299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134394307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9226;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134394534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134394582 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5306;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134394640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6920;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134394714 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6624;ERATE=0.0006;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134394812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.3164;AVGPOST=0.9963;RSQ=0.9946;ERATE=0.0006;THETA=0.0006;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 134394880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.742;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7176;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134394897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5828;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134395187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.689;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.7815;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134395245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0704;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 134395481 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0089;AVGPOST=0.9977;RSQ=0.8908;ERATE=0.0006;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134395996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.8067;ERATE=0.0002;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134396138 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0357;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134396146 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0034;AVGPOST=0.9971;RSQ=0.7136;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134396217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0271;AVGPOST=0.9995;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134396233 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134396234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8810;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134396276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6694;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134396416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134396469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134396498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134396538 rs35110373 T TAC 14897 PASS INDEL;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1223;AVGPOST=0.9966;RSQ=0.9883;ERATE=0.0004;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 134396590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0074;AVGPOST=0.9983;RSQ=0.9204;ERATE=0.0002;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134396599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134396660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.676;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8683;ERATE=0.0004;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134396973 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0205;AVGPOST=0.9992;RSQ=0.9835;ERATE=0.0003;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134397211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9431;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134397282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0725;AVGPOST=0.9971;RSQ=0.9867;ERATE=0.0003;THETA=0.0010;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 134397283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1299;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0005;THETA=0.0007;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 134397384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.684;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6297;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134397523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.580;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4907;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134397650 . AAAT A 536 PASS INDEL;BAVGPOST=0.977;BRSQ=0.614;LDAF=0.0532;AVGPOST=0.9409;RSQ=0.5281;ERATE=0.0125;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134397663 . T TC 1254 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0055;AVGPOST=0.9986;RSQ=0.8974;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134397788 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0054;AVGPOST=0.9987;RSQ=0.9038;ERATE=0.0002;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134397790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9327;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134397823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0359;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0002;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134397863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7315;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0003;THETA=0.0014;AC=1599;AN=2184 GT:DS:GL:BD 0.73214287 1 1 134397958 . CCAA C 2661 PASS INDEL;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0165;AVGPOST=0.9996;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134398028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9300;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134398103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134398189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9859;ERATE=0.0002;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134398205 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.8301;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134398227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9523;ERATE=0.0010;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134398273 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134398568 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0205;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0002;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134398623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9640;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134398712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9201;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134398761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0111;AVGPOST=0.9989;RSQ=0.9544;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134398909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134398968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134399027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134399099 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6114;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134399238 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0167;AVGPOST=0.9993;RSQ=0.9842;ERATE=0.0002;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134399278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1447;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 134399394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6681;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134399534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5830;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134399643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7263;AVGPOST=0.9880;RSQ=0.9787;ERATE=0.0022;THETA=0.0008;AC=1591;AN=2184 GT:DS:GL:BD 0.72847986 1 1 134399646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5741;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134399717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9058;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134399721 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134399750 rs113377166 C CT 1230 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9982;RSQ=0.9290;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134399758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134399795 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9643;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134399917 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134399921 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5954;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134400048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0158;AVGPOST=0.9989;RSQ=0.9715;ERATE=0.0002;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134400082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134400115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9373;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134400116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8667;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134400415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1255;AVGPOST=0.9970;RSQ=0.9893;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134400432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8292;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134400442 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0090;AVGPOST=0.9988;RSQ=0.9466;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134400443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9576;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134400484 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8440;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134400589 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134400748 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1448;AVGPOST=0.9963;RSQ=0.9896;ERATE=0.0005;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134400814 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.701;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7626;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134400978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.600;LDAF=0.0089;AVGPOST=0.9894;RSQ=0.5522;ERATE=0.0010;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134401057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.711;LDAF=0.9387;AVGPOST=0.9547;RSQ=0.6936;ERATE=0.0036;THETA=0.0003;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 134401083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.535;LDAF=0.0149;AVGPOST=0.9820;RSQ=0.5347;ERATE=0.0006;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134401161 . CAATTGATT C 98 PASS INDEL;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0047;AVGPOST=0.9927;RSQ=0.4231;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134401365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3959;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134401377 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.355;LDAF=0.0580;AVGPOST=0.9362;RSQ=0.5589;ERATE=0.0050;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 134401449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.867;LDAF=0.0294;AVGPOST=0.9901;RSQ=0.8607;ERATE=0.0006;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134401454 . TTAA T 825 PASS INDEL;BAVGPOST=0.958;BRSQ=0.188;LDAF=0.1279;AVGPOST=0.8145;RSQ=0.3587;ERATE=0.0109;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134401576 . ATT A 245 PASS INDEL;BAVGPOST=0.993;BRSQ=0.679;LDAF=0.0344;AVGPOST=0.9692;RSQ=0.6572;ERATE=0.0014;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134401585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.769;LDAF=0.2098;AVGPOST=0.9287;RSQ=0.8365;ERATE=0.0035;THETA=0.0002;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 134401683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.573;LDAF=0.0436;AVGPOST=0.9672;RSQ=0.6865;ERATE=0.0016;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134401805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.208;LDAF=0.0404;AVGPOST=0.9410;RSQ=0.4194;ERATE=0.0040;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134401840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.616;LDAF=0.0246;AVGPOST=0.9857;RSQ=0.7692;ERATE=0.0011;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134401957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.332;LDAF=0.0992;AVGPOST=0.8871;RSQ=0.5246;ERATE=0.0055;THETA=0.0003;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 134401966 . ATT A 103 PASS INDEL;BAVGPOST=0.991;BRSQ=0.089;LDAF=0.0526;AVGPOST=0.9136;RSQ=0.3312;ERATE=0.0056;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134401974 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.388;LDAF=0.0563;AVGPOST=0.9369;RSQ=0.5505;ERATE=0.0045;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134402069 . A AAT 1382 PASS INDEL;BAVGPOST=0.737;BRSQ=0.455;LDAF=0.3677;AVGPOST=0.9234;RSQ=0.8775;ERATE=0.0029;THETA=0.0007;AC=794;AN=2184 GT:DS:GL:BD 0.36355311 0 1 134402083 . TTAGA T 197 PASS INDEL;BAVGPOST=0.975;BRSQ=0.065;LDAF=0.0659;AVGPOST=0.9009;RSQ=0.3626;ERATE=0.0043;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134402108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.047;LDAF=0.0834;AVGPOST=0.8827;RSQ=0.4368;ERATE=0.0053;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 134402205 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.713;BRSQ=0.104;LDAF=0.7727;AVGPOST=0.7432;RSQ=0.3985;ERATE=0.0181;THETA=0.0006;AC=1818;AN=2184 GT:DS:GL:BD 0.83241761 1 1 134402209 . A AAT 32 PASS INDEL;BAVGPOST=0.976;BRSQ=0.064;LDAF=0.0567;AVGPOST=0.9194;RSQ=0.4317;ERATE=0.0039;THETA=0.0003;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134402304 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.099;LDAF=0.0651;AVGPOST=0.9052;RSQ=0.4094;ERATE=0.0044;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134402344 . AAT A 1828 PASS INDEL;BAVGPOST=0.833;BRSQ=0.533;LDAF=0.2795;AVGPOST=0.7979;RSQ=0.6270;ERATE=0.0159;THETA=0.0008;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 134402365 . TTATA T 1001 PASS INDEL;BAVGPOST=0.994;BRSQ=0.760;LDAF=0.0437;AVGPOST=0.9489;RSQ=0.5469;ERATE=0.0031;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134402422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.572;LDAF=0.0229;AVGPOST=0.9770;RSQ=0.5930;ERATE=0.0020;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134402443 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.667;LDAF=0.0090;AVGPOST=0.9933;RSQ=0.7216;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134402641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.966;LDAF=0.2213;AVGPOST=0.9823;RSQ=0.9599;ERATE=0.0009;THETA=0.0005;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 134402661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6876;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134402770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4744;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134402859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9990;RSQ=0.9584;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134402894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9920;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134402971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6980;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134403022 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.817;LDAF=0.0152;AVGPOST=0.9922;RSQ=0.8113;ERATE=0.0154;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134403185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6719;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134403361 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7771;AVGPOST=0.9938;RSQ=0.9875;ERATE=0.0007;THETA=0.0005;AC=1699;AN=2184 GT:DS:GL:BD 0.77793038 1 1 134403432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8977;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134403514 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5638;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134403605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9752;ERATE=0.0004;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134403718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4696;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134403750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4757;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134403776 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134403868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0541;AVGPOST=0.9993;RSQ=0.9937;ERATE=0.0003;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 134403887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134403932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134403944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134403978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134404048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134404056 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5752;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134404110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7093;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134404188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5304;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134404207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6650;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134404629 rs71666395 C CA 634 PASS INDEL;BAVGPOST=0.976;BRSQ=0.585;LDAF=0.0474;AVGPOST=0.9457;RSQ=0.5367;ERATE=0.0090;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134404697 . AAAAAAAG A 385 PASS INDEL;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0029;AVGPOST=0.9959;RSQ=0.3883;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134404701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0123;AVGPOST=0.9986;RSQ=0.9489;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134404854 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6256;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134404865 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4525;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134404959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8711;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134405074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134405151 . A AG 7335 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0539;AVGPOST=0.9976;RSQ=0.9799;ERATE=0.0005;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134405333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134405349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2894;AVGPOST=0.9943;RSQ=0.9898;ERATE=0.0005;THETA=0.0005;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 134405353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8717;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134405399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0080;AVGPOST=0.9976;RSQ=0.8787;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134405476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6345;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134405558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134405627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9691;AVGPOST=0.9987;RSQ=0.9806;ERATE=0.0004;THETA=0.0005;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 134405788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134405880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134405920 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8241;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134406099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7447;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134406236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.824;LDAF=0.9037;AVGPOST=0.9439;RSQ=0.7827;ERATE=0.0106;THETA=0.0012;AC=1999;AN=2184 GT:DS:GL:BD 0.91529304 1 1 134406298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0556;AVGPOST=0.9960;RSQ=0.9718;ERATE=0.0003;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 134406332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0046;AVGPOST=0.9992;RSQ=0.9234;ERATE=0.0002;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134406479 . GA G 2041 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0354;AVGPOST=0.9988;RSQ=0.9835;ERATE=0.0003;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134406582 . CTAATA C 2594 PASS INDEL;BAVGPOST=0.993;BRSQ=0.871;LDAF=0.0280;AVGPOST=0.9973;RSQ=0.9610;ERATE=0.0004;THETA=0.0010;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134406600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134406639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134406666 . T TC 63 PASS INDEL;BAVGPOST=0.783;BRSQ=0.065;LDAF=0.1913;AVGPOST=0.7735;RSQ=0.4179;ERATE=0.0101;THETA=0.0005;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 134406747 . T TC 157 PASS INDEL;BAVGPOST=0.964;BRSQ=0.200;LDAF=0.0533;AVGPOST=0.9326;RSQ=0.4907;ERATE=0.0038;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134406748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9478;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134406902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134407084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134407262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9779;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134407271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134407444 . TG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0035;AVGPOST=0.9952;RSQ=0.4929;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134407541 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9061;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134407548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134407641 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134407683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134407782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134407804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0516;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0002;THETA=0.0007;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134407924 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9307;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134407939 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2790;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0004;THETA=0.0010;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 134408091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.846;LDAF=0.0175;AVGPOST=0.9956;RSQ=0.8977;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134408160 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.507;LDAF=0.0035;AVGPOST=0.9953;RSQ=0.5002;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134408186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0057;AVGPOST=0.9947;RSQ=0.6427;ERATE=0.0006;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134408216 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5955;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134408731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4917;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134408747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9252;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134408764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.6817;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134408821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8393;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134408996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8393;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134409004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409084 . G GC 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7692;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134409195 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134409470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134409502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6674;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134409651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409669 MERGED_DEL_2_6373 CATGCAAGACAATTAATTCTCCCTGGAATATCAGGGTCAGTTCCCAGCTGAAGTACCATGGGAGTTAGGTCAGCAGTTCCCAAAAATCTTGGCCTCTGCAATCCTTTACACTCCTAAAAATTATTGAGAATCACAAAGAGCATTTGCTTATGTGGGGTATATCTACCAATGTTTACCATATTTGAAGCCA C . . SV;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7759;ERATE=0.0003;THETA=0.0004;CIEND=-20;30;CIPOS=-23;16;END=177117573;HOMLEN=2;HOMSEQ=AT;SOURCE=EMBLdelly_177114956_177117574;G GT:DS:GL:BD 0.00091575 0 1 134409691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409797 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0064;AVGPOST=0.9984;RSQ=0.9189;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134409946 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.7045;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134409952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6415;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134409979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4147;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134409996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1782;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0004;THETA=0.0010;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 134410073 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134410102 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4655;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134410199 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9849;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134410345 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9266;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134410715 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0076;AVGPOST=0.9963;RSQ=0.8173;ERATE=0.0011;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134410911 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.738;LDAF=0.0036;AVGPOST=0.9966;RSQ=0.6004;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134410912 . C CAG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3480;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134410921 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6061;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134410996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134411028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134411077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0096;AVGPOST=0.9952;RSQ=0.8170;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134411124 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6375;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134411128 . TG T 118 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7694;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134411141 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134411216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134411278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134411299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134411346 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8619;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134411453 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0094;AVGPOST=0.9973;RSQ=0.8872;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134411573 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2867;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0005;THETA=0.0006;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 134411843 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6256;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134411945 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0069;AVGPOST=0.9983;RSQ=0.8930;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134411995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.728;LDAF=0.0055;AVGPOST=0.9983;RSQ=0.8720;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134412012 . C CA 724 PASS INDEL;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0084;AVGPOST=0.9931;RSQ=0.6465;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134412025 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9295;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134412075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0114;AVGPOST=0.9974;RSQ=0.8994;ERATE=0.0005;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134412115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.453;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.4265;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134412150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.1709;AVGPOST=0.9964;RSQ=0.9901;ERATE=0.0005;THETA=0.0006;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 134412205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.776;LDAF=0.0263;AVGPOST=0.9843;RSQ=0.7571;ERATE=0.0029;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134412246 . CT C 145 PASS INDEL;BAVGPOST=0.972;BRSQ=0.405;LDAF=0.0448;AVGPOST=0.9380;RSQ=0.4256;ERATE=0.0124;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134412501 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2282;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0004;THETA=0.0021;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 134412569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8552;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134412575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1705;AVGPOST=0.9962;RSQ=0.9900;ERATE=0.0005;THETA=0.0007;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 134412858 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.322;LDAF=0.0236;AVGPOST=0.9738;RSQ=0.5334;ERATE=0.0023;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134412970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.256;LDAF=0.0601;AVGPOST=0.9253;RSQ=0.4833;ERATE=0.0063;THETA=0.0010;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134413006 . TGC T 2242 PASS INDEL;BAVGPOST=0.919;BRSQ=0.737;LDAF=0.1649;AVGPOST=0.9586;RSQ=0.9053;ERATE=0.0011;THETA=0.0005;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 134413017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.725;LDAF=0.1811;AVGPOST=0.9259;RSQ=0.8237;ERATE=0.0049;THETA=0.0006;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 134413018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.769;LDAF=0.2159;AVGPOST=0.9728;RSQ=0.9486;ERATE=0.0011;THETA=0.0004;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 134413019 . G GCA 164 PASS INDEL;BAVGPOST=0.960;BRSQ=0.191;LDAF=0.0551;AVGPOST=0.9245;RSQ=0.4451;ERATE=0.0042;THETA=0.0013;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134413031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.216;LDAF=0.0608;AVGPOST=0.9268;RSQ=0.5191;ERATE=0.0034;THETA=0.0010;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 134413079 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7762;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134413353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8641;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134413585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134413586 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0002;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134413753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9983;RSQ=0.8841;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134413803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5353;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134413909 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.2771;AVGPOST=0.9916;RSQ=0.9863;ERATE=0.0013;THETA=0.0005;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 134414109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6918;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134414249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8268;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134414389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0152;AVGPOST=0.9963;RSQ=0.9028;ERATE=0.0008;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134414470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0059;AVGPOST=0.9953;RSQ=0.6858;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134414502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134414511 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134414576 . AC A 4544 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0429;AVGPOST=0.9983;RSQ=0.9842;ERATE=0.0004;THETA=0.0014;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134414632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0093;AVGPOST=0.9990;RSQ=0.9508;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134414680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6258;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134414712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9389;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134414721 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134414856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9392;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134414905 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2807;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 134414925 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134415008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8636;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134415029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6975;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134415195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9017;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134415198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5179;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134415263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134415301 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0435;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0002;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134415310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8918;ERATE=0.0002;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134415337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9162;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134415430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6742;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134415451 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0262;AVGPOST=0.9954;RSQ=0.9187;ERATE=0.0004;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134415492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6964;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134415510 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134415591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4602;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134415610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.7545;ERATE=0.0002;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134415666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.691;LDAF=0.0050;AVGPOST=0.9948;RSQ=0.6281;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134415789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134415805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.977;LDAF=0.0598;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134415886 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5989;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134416083 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8554;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134416105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7028;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134416154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8140;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134416251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.0615;AVGPOST=0.9976;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 134416315 . TATATC T 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134416451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134416457 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134416584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0041;AVGPOST=0.9976;RSQ=0.7496;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134416701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8160;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134416708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0069;AVGPOST=0.9986;RSQ=0.9124;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134416807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.6273;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134416830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134416874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0096;AVGPOST=0.9994;RSQ=0.9698;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134416875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0114;AVGPOST=0.9981;RSQ=0.9419;ERATE=0.0002;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134416932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.858;LDAF=0.0219;AVGPOST=0.9879;RSQ=0.7862;ERATE=0.0054;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134416940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8941;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134417045 . A AG 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6255;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134417059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0092;AVGPOST=0.9993;RSQ=0.9681;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134417209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134417246 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9172;ERATE=0.0005;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134417283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0595;AVGPOST=0.9981;RSQ=0.9877;ERATE=0.0003;THETA=0.0006;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134417284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134417297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0090;AVGPOST=0.9996;RSQ=0.9834;ERATE=0.0002;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134417327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9826;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134417379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0392;AVGPOST=0.9971;RSQ=0.9701;ERATE=0.0004;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 134417584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.802;LDAF=0.0145;AVGPOST=0.9969;RSQ=0.9061;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134417659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1124;AVGPOST=0.9965;RSQ=0.9870;ERATE=0.0004;THETA=0.0002;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 134417693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1136;AVGPOST=0.9985;RSQ=0.9942;ERATE=0.0003;THETA=0.0003;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 134417710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134417719 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0912;AVGPOST=0.9966;RSQ=0.9840;ERATE=0.0006;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 134417750 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9614;AVGPOST=0.9992;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 134418032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9626;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134418050 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134418191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8533;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134418264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8734;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134418273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0355;AVGPOST=0.9989;RSQ=0.9876;ERATE=0.0003;THETA=0.0008;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134418308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134418323 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0079;AVGPOST=0.9993;RSQ=0.9562;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134418433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134418438 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8455;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0001;AC=1847;AN=2184 GT:DS:GL:BD 0.84569597 1 1 134418522 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134418852 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0074;AVGPOST=0.9987;RSQ=0.9247;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134418893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6115;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134419004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134419039 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134419052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.5114;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134419074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.544;LDAF=0.9661;AVGPOST=0.9601;RSQ=0.5309;ERATE=0.0072;THETA=0.0003;AC=2134;AN=2184 GT:DS:GL:BD 0.97710621 1 1 134419075 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5876;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134419095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7459;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134419142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0250;AVGPOST=0.9988;RSQ=0.9848;ERATE=0.0002;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134419276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134419313 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134419329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134419364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9994;RSQ=0.9878;ERATE=0.0002;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134419419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0194;AVGPOST=0.9990;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134419452 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134419468 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4442;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 134419484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134419509 . GTGT G 1149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8671;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134419569 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134419574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134419618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1468;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 134419683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8450;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0002;THETA=0.0005;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 134419685 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134419686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6441;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134419937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0146;AVGPOST=0.9978;RSQ=0.9327;ERATE=0.0006;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134420036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0161;AVGPOST=0.9978;RSQ=0.9361;ERATE=0.0007;THETA=0.0012;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134420037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4275;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134420159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9441;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134420190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134420252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0253;AVGPOST=0.9990;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134420257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1044;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134420287 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4229;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134420335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0139;AVGPOST=0.9994;RSQ=0.9808;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134420355 . CA C 1248 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9986;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134420422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5332;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134420452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.529;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5131;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134420460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134420562 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8470;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134420660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134420709 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0209;AVGPOST=0.9970;RSQ=0.9480;ERATE=0.0004;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134420755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134420777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134420785 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9808;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134420792 . AG A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5924;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134420845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8411;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134420885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8794;ERATE=0.0002;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134420985 . TTA T 52 PASS INDEL;BAVGPOST=0.995;BRSQ=0.500;LDAF=0.0133;AVGPOST=0.9836;RSQ=0.5143;ERATE=0.0017;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134421005 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0358;AVGPOST=0.9958;RSQ=0.9490;ERATE=0.0003;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 134421078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134421098 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8466;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134421203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9510;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134421330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1349;AVGPOST=0.9983;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 134421414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1057;AVGPOST=0.9978;RSQ=0.9931;ERATE=0.0003;THETA=0.0001;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 134421418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9281;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134421496 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7550;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134421508 . GTGTT G 2102 PASS INDEL;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0186;AVGPOST=0.9986;RSQ=0.9711;ERATE=0.0004;THETA=0.0001;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134421698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0002;THETA=0.0022;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134421769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9583;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134421792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7901;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134421814 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134421861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.7141;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134421917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.7256;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134421959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9880;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134421962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9805;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134422024 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9799;ERATE=0.0002;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134422194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6597;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134422197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8817;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134422286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0292;AVGPOST=0.9979;RSQ=0.9707;ERATE=0.0006;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134422311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4779;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134422338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.6924;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134422341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1042;AVGPOST=0.9991;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134422486 rs79191344 G GTAAA 36346 PASS INDEL;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.3550;AVGPOST=0.9839;RSQ=0.9716;ERATE=0.0018;THETA=0.0002;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 134422530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.694;LDAF=0.0060;AVGPOST=0.9958;RSQ=0.7364;ERATE=0.0008;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134422704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0120;AVGPOST=0.9848;RSQ=0.4868;ERATE=0.0023;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134422805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.650;LDAF=0.0611;AVGPOST=0.9399;RSQ=0.5974;ERATE=0.0094;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134422838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0181;AVGPOST=0.9992;RSQ=0.9793;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134423074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0327;AVGPOST=0.9994;RSQ=0.9915;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134423087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8230;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134423296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0120;AVGPOST=0.9936;RSQ=0.7812;ERATE=0.0006;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134423494 rs59598953 CATAT C 619 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9159;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134423510 . GGTGT G 531 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8770;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134423534 . A ATG 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4357;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134423547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.707;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.7268;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134423570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0045;AVGPOST=0.9968;RSQ=0.7477;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134423635 . GCT G 4700 PASS INDEL;BAVGPOST=0.996;BRSQ=0.956;LDAF=0.0390;AVGPOST=0.9986;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134423709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0358;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134423821 . TA T 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5645;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134423860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0354;AVGPOST=0.9989;RSQ=0.9868;ERATE=0.0003;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134423901 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8715;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134424059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4024;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134424077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1034;AVGPOST=0.9973;RSQ=0.9899;ERATE=0.0003;THETA=0.0004;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 134424109 . CCTTT C 52 PASS INDEL;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134424153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134424242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.1118;AVGPOST=0.9967;RSQ=0.9870;ERATE=0.0003;THETA=0.0010;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 134424292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0685;AVGPOST=0.9968;RSQ=0.9821;ERATE=0.0003;THETA=0.0007;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 134424294 . C CT 2056 PASS INDEL;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0691;AVGPOST=0.9957;RSQ=0.9763;ERATE=0.0003;THETA=0.0006;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 134424294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134424301 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0176;AVGPOST=0.9976;RSQ=0.9504;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134424521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1088;AVGPOST=0.9976;RSQ=0.9914;ERATE=0.0007;THETA=0.0004;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 134424596 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134424642 . CTT C 2305 PASS INDEL;BAVGPOST=0.996;BRSQ=0.943;LDAF=0.0351;AVGPOST=0.9980;RSQ=0.9772;ERATE=0.0002;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134424802 . AT A 1813 PASS INDEL;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0351;AVGPOST=0.9973;RSQ=0.9710;ERATE=0.0003;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134424806 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6352;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134424818 . A AT 20 PASS INDEL;BAVGPOST=0.998;BRSQ=0.559;LDAF=0.0047;AVGPOST=0.9936;RSQ=0.4540;ERATE=0.0010;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134424927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9804;ERATE=0.0002;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134425124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134425184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8972;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134425193 . TTTC T 601 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9600;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134425239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134425286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7740;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134425339 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9201;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134425569 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134425604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134425671 . C CA 93 PASS INDEL;BAVGPOST=0.997;BRSQ=0.675;LDAF=0.0077;AVGPOST=0.9893;RSQ=0.4789;ERATE=0.0025;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134425727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134425754 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0199;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134425780 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6330;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134425853 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7062;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134425955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134425965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8076;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134426126 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8776;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134426468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9629;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134426532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3278;AVGPOST=0.9972;RSQ=0.9957;ERATE=0.0003;THETA=0.0008;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 134426553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134426659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134426696 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134426730 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134426750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134426773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.525;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7931;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134426857 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8952;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134426983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0459;AVGPOST=0.9988;RSQ=0.9899;ERATE=0.0004;THETA=0.0007;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 134427033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0129;AVGPOST=0.9987;RSQ=0.9647;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134427039 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0454;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 134427061 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134427112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134427124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9219;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134427183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6677;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134427224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134427270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9344;ERATE=0.0002;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134427319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134427324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134427444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6274;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134427449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7770;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134427511 . G GT 742 PASS INDEL;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.8047;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134427658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134427965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134428009 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134428046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6040;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134428069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8681;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134428094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8332;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134428095 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5693;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134428312 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6353;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134428447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9116;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134428456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.526;LDAF=0.0040;AVGPOST=0.9942;RSQ=0.4695;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134428463 . C CAT 69674 PASS INDEL;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5077;AVGPOST=0.9951;RSQ=0.9924;ERATE=0.0009;THETA=0.0003;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 134428638 rs34560147 G GTA 72922 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5082;AVGPOST=0.9956;RSQ=0.9928;ERATE=0.0008;THETA=0.0005;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 134428641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3805;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0004;THETA=0.0009;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 134428715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5091;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 134428746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9989;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134428792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9989;RSQ=0.9830;ERATE=0.0003;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134428945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134428946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8597;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134428960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0269;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0026;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134429110 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134429244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0220;AVGPOST=0.9988;RSQ=0.9797;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134429433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134429519 . CTG C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6908;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134429537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.4754;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0009;THETA=0.0007;AC=1038;AN=2184 GT:DS:GL:BD 0.47527471 0 1 134429572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134429592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0070;AVGPOST=0.9978;RSQ=0.8623;ERATE=0.0011;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134429665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5673;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134429691 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134429890 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430003 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4538;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0007;THETA=0.0002;AC=990;AN=2184 GT:DS:GL:BD 0.45329669 0 1 134430038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9876;ERATE=0.0003;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134430204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4548;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 134430219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134430285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6781;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134430289 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0210;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134430291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430329 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5078;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0004;THETA=0.0008;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 134430367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430373 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134430388 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4486;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0005;THETA=0.0009;AC=979;AN=2184 GT:DS:GL:BD 0.44826007 0 1 134430479 MERGED_DEL_2_6477 T ADELA . . SV;BAVGPOST=0.998;BRSQ=0.458;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4680;ERATE=0.0005;THETA=0.0003;CIEND=-17;33;CIPOS=-18;19;END=181361775;SOURCE=GenomeStrip_181360260_181361775;SVTYPE=DEL;AC=1;AN GT:DS:GL:BD 0.00045788 0 1 134430599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4885;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0009;THETA=0.0003;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 134430629 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134430650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0183;AVGPOST=0.9992;RSQ=0.9818;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134430799 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134430887 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0181;AVGPOST=0.9990;RSQ=0.9754;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134431017 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8927;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134431018 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5086;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 134431059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134431097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8526;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134431137 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0192;AVGPOST=0.9996;RSQ=0.9907;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134431181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134431282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0090;AVGPOST=0.9992;RSQ=0.9694;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134431308 rs6143506 G GTC 1427 PASS INDEL;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0147;AVGPOST=0.9968;RSQ=0.9134;ERATE=0.0004;THETA=0.0045;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134431372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134431511 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0606;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0008;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 134431603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134431631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9165;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134431647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134431682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134431687 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9997;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134431734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134431745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134431924 . A AAAATATTTC 4552 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0133;AVGPOST=0.9991;RSQ=0.9671;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134431956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0004;THETA=0.0027;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134432123 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9656;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134432289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0191;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134432358 . AG A 191 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134432436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134432437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0383;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134432626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.8937;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134432647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.7043;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134432733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8954;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134432760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134432885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8105;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134432903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0333;AVGPOST=0.9990;RSQ=0.9876;ERATE=0.0004;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134433011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6453;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134433015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.5048;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433155 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0260;AVGPOST=0.9979;RSQ=0.9704;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134433190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134433212 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0218;AVGPOST=0.9955;RSQ=0.9257;ERATE=0.0013;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134433220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134433395 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5756;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134433424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134433481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134433523 . GGT G 1995 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0192;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134433592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134433698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134433759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134433791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9463;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134433845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0099;AVGPOST=0.9984;RSQ=0.9335;ERATE=0.0004;THETA=0.0022;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134433889 . GGA G 71 PASS INDEL;BAVGPOST=0.989;BRSQ=0.681;LDAF=0.0254;AVGPOST=0.9703;RSQ=0.5325;ERATE=0.0120;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134433890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8438;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134433925 . TTGAGAG T 390 PASS INDEL;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7268;ERATE=0.0014;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134433933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134434045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0050;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134434212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134434311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0138;AVGPOST=0.9971;RSQ=0.9125;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134434440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0210;AVGPOST=0.9948;RSQ=0.9159;ERATE=0.0005;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134434478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134434579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4816;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134434666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8261;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134434789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8139;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134434874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134434930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0154;AVGPOST=0.9988;RSQ=0.9686;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134434959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9502;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134434974 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134434985 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134434998 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134435065 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0052;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134435124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134435310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134435312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134435314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0052;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134435347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134435400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1062;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0003;THETA=0.0010;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 134435454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9319;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134435487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134435582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6819;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134435605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7211;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134435627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0386;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134435799 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134435842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134435844 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9904;ERATE=0.0003;THETA=0.0026;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134435881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0210;AVGPOST=0.9986;RSQ=0.9715;ERATE=0.0005;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134435933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9676;ERATE=0.0014;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134435998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9545;ERATE=0.0003;THETA=0.0036;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134435999 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0332;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0003;THETA=0.0021;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134436022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134436050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134436085 rs113486256 T TA 3081 PASS INDEL;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0346;AVGPOST=0.9969;RSQ=0.9648;ERATE=0.0005;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134436086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134436112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0268;AVGPOST=0.9989;RSQ=0.9825;ERATE=0.0004;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134436245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1107;AVGPOST=0.9963;RSQ=0.9863;ERATE=0.0004;THETA=0.0148;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 134436363 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134436364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0004;THETA=0.0063;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134436368 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9184;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134436446 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9853;ERATE=0.0003;THETA=0.0160;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134436589 . CCTAT C 346 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134436668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0295;AVGPOST=0.9977;RSQ=0.9695;ERATE=0.0004;THETA=0.0143;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134436675 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8323;ERATE=0.0003;THETA=0.0165;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134436809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9538;ERATE=0.0003;THETA=0.0077;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134436823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0176;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134436880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134436953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9103;ERATE=0.0005;THETA=0.0162;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134437063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134437200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.915;LDAF=0.3003;AVGPOST=0.9483;RSQ=0.9115;ERATE=0.0055;THETA=0.0212;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 134437272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0004;THETA=0.0134;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134437321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.6117;ERATE=0.0005;THETA=0.0129;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134437361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.881;LDAF=0.0196;AVGPOST=0.9947;RSQ=0.8836;ERATE=0.0007;THETA=0.0120;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134437399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0058;AVGPOST=0.9959;RSQ=0.7187;ERATE=0.0004;THETA=0.0107;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134437463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0089;AVGPOST=0.9985;RSQ=0.9401;ERATE=0.0005;THETA=0.0081;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134437534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0022;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134437721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134437722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9516;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134437745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.957;LDAF=0.4432;AVGPOST=0.9764;RSQ=0.9658;ERATE=0.0018;THETA=0.0034;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 134437772 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134437786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.958;LDAF=0.9078;AVGPOST=0.9942;RSQ=0.9754;ERATE=0.0006;THETA=0.0024;AC=1983;AN=2184 GT:DS:GL:BD 0.90796703 1 1 134437834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0075;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134437868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0100;AVGPOST=0.9981;RSQ=0.9250;ERATE=0.0006;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134437881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0057;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134437902 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134437918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0608;AVGPOST=0.9992;RSQ=0.9943;ERATE=0.0003;THETA=0.0017;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 134437985 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5907;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134438031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6004;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134438048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9144;ERATE=0.0010;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134438081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.964;LDAF=0.5161;AVGPOST=0.9810;RSQ=0.9713;ERATE=0.0009;THETA=0.0042;AC=1125;AN=2184 GT:DS:GL:BD 0.51510990 1 1 134438143 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7981;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134438163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134438202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6750;ERATE=0.0005;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134438229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6185;ERATE=0.0006;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134438330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7475;ERATE=0.0005;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134438461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0074;AVGPOST=0.9958;RSQ=0.7525;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134438486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6264;ERATE=0.0005;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134438504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7330;ERATE=0.0003;THETA=0.0043;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134438520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0092;AVGPOST=0.9973;RSQ=0.8889;ERATE=0.0004;THETA=0.0070;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134438522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8519;ERATE=0.0005;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134438539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1686;AVGPOST=0.9987;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 134438615 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6970;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134438802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9997;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134438851 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134438881 . G GC 131 PASS INDEL;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6758;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134438885 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134439131 . CAT C 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4481;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134439203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134439512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134439588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134439626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0132;AVGPOST=0.9989;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134439708 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6663;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134439736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9758;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134439737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0091;AVGPOST=0.9959;RSQ=0.8385;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134440081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3690;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134440089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0030;AVGPOST=0.9964;RSQ=0.5533;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134440105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0073;AVGPOST=0.9959;RSQ=0.7760;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134440113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.6529;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134440168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134440216 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3938;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134440225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134440257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1653;AVGPOST=0.9963;RSQ=0.9874;ERATE=0.0005;THETA=0.0005;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 134440298 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7393;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134440338 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0057;AVGPOST=0.9973;RSQ=0.8240;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134440404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.6131;ERATE=0.0008;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134440406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5939;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134440476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134440499 . AT A 834 PASS INDEL;BAVGPOST=0.992;BRSQ=0.815;LDAF=0.0218;AVGPOST=0.9915;RSQ=0.8550;ERATE=0.0008;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134440528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8978;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134440574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.821;LDAF=0.0332;AVGPOST=0.9894;RSQ=0.8737;ERATE=0.0007;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134440692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9420;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134440767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7109;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134441015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134441097 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.9012;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134441291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0061;AVGPOST=0.9990;RSQ=0.9222;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134441428 . CTT C 131 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.5211;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134441532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134441677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.7259;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134441686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5621;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134441696 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9999;RSQ=0.9826;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134441754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134441809 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134441810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134441843 rs140840 CTT C 12589 PASS INDEL;BAVGPOST=0.995;BRSQ=0.973;LDAF=0.0931;AVGPOST=0.9955;RSQ=0.9760;ERATE=0.0004;THETA=0.0006;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134441918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134441935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.7016;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134441936 . A AACCAGAC 11193 PASS INDEL;BAVGPOST=0.989;BRSQ=0.887;LDAF=0.0341;AVGPOST=0.9917;RSQ=0.9076;ERATE=0.0008;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134442324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0010;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134442499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134442610 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134442786 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9665;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134442907 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134442962 . T TA 87 PASS INDEL;BAVGPOST=0.991;BRSQ=0.546;LDAF=0.0199;AVGPOST=0.9729;RSQ=0.4703;ERATE=0.0062;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134442969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134443119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9756;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134443130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5402;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134443154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.627;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8628;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134443406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134443439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8728;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134443538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134443556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.6497;ERATE=0.0015;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134443725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9288;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134443781 . AC A 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8628;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134443898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7781;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134444002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5702;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0007;THETA=0.0004;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 134444004 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.5297;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134444131 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0043;AVGPOST=0.9981;RSQ=0.7945;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134444141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.975;LDAF=0.1142;AVGPOST=0.9970;RSQ=0.9893;ERATE=0.0004;THETA=0.0004;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 134444153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5319;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134444163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0090;AVGPOST=0.9973;RSQ=0.9036;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134444233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134444310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9174;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134444336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134444341 . C CT 2570 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9742;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134444384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0236;AVGPOST=0.9991;RSQ=0.9860;ERATE=0.0004;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134444389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134444431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9642;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134444442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6005;AVGPOST=0.9947;RSQ=0.9917;ERATE=0.0016;THETA=0.0003;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 134444452 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0111;AVGPOST=0.9979;RSQ=0.9246;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134444558 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5065;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134444570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0407;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134444634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2071;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=451;AN=2184 GT:DS:GL:BD 0.20650183 0 1 134444782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0018;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134444787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9423;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134444879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6971;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134444880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6080;AVGPOST=0.9968;RSQ=0.9950;ERATE=0.0004;THETA=0.0004;AC=1328;AN=2184 GT:DS:GL:BD 0.60805863 1 1 134444882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134444994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134445015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8346;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134445034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7797;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134445087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134445101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7541;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134445102 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1470;AVGPOST=0.9987;RSQ=0.9963;ERATE=0.0005;THETA=0.0028;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 134445109 . AG A 173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0041;AVGPOST=0.9988;RSQ=0.8816;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134445477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0067;AVGPOST=0.9995;RSQ=0.9703;ERATE=0.0003;THETA=0.0026;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134445552 . G GA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134445553 . AAAAAAG A 2481 PASS INDEL;BAVGPOST=0.988;BRSQ=0.914;LDAF=0.0684;AVGPOST=0.9926;RSQ=0.9521;ERATE=0.0010;THETA=0.0010;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 134445712 rs67240459 AAAAAG A 4476 PASS INDEL;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0738;AVGPOST=0.9865;RSQ=0.9251;ERATE=0.0017;THETA=0.0008;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 134445713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0499;AVGPOST=0.9985;RSQ=0.9866;ERATE=0.0005;THETA=0.0011;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134445794 . AC A 80 PASS INDEL;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6609;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134445886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9464;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134445928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9989;RSQ=0.9430;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134445982 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7822;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134446052 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.6123;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134446261 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134446342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.584;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6593;ERATE=0.0008;THETA=0.0083;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134446359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.556;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.6060;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134446360 . GT G 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5306;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134446426 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2041;AVGPOST=0.9968;RSQ=0.9923;ERATE=0.0006;THETA=0.0005;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 134446492 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134446578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4741;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134446687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6443;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134446734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0157;AVGPOST=0.9988;RSQ=0.9658;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134446850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8460;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134446945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7456;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134447173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7802;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134447340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134447408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4790;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134447422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8700;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134447506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9993;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134447515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2247;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 134447641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134447660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6155;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134447727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1899;AVGPOST=0.9975;RSQ=0.9934;ERATE=0.0005;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 134447834 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9653;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134447884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5287;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134448017 . GT G 9661 PASS INDEL;BAVGPOST=0.886;BRSQ=0.795;LDAF=0.3077;AVGPOST=0.9191;RSQ=0.8678;ERATE=0.0049;THETA=0.0006;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 134448033 . T TTG 1683 PASS INDEL;BAVGPOST=0.894;BRSQ=0.658;LDAF=0.1744;AVGPOST=0.8859;RSQ=0.7083;ERATE=0.0099;THETA=0.0003;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 134448036 . TTG T 7667 PASS INDEL;BAVGPOST=0.924;BRSQ=0.879;LDAF=0.5575;AVGPOST=0.8931;RSQ=0.8470;ERATE=0.0091;THETA=0.0002;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 134448037 . TG T 15231 PASS INDEL;BAVGPOST=0.924;BRSQ=0.879;LDAF=0.5698;AVGPOST=0.9138;RSQ=0.8752;ERATE=0.0080;THETA=0.0003;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 134448038 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.613;LDAF=0.0138;AVGPOST=0.9853;RSQ=0.5778;ERATE=0.0019;THETA=0.0061;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134448049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.765;LDAF=0.0168;AVGPOST=0.9896;RSQ=0.7413;ERATE=0.0008;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134448079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.702;LDAF=0.0164;AVGPOST=0.9880;RSQ=0.7332;ERATE=0.0012;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134448103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1436;AVGPOST=0.9993;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 134448371 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.845;LDAF=0.0525;AVGPOST=0.9718;RSQ=0.7817;ERATE=0.0008;THETA=0.0007;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 134448455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.416;LDAF=0.0072;AVGPOST=0.9907;RSQ=0.5326;ERATE=0.0007;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134448463 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.306;LDAF=0.0683;AVGPOST=0.9583;RSQ=0.7617;ERATE=0.0008;THETA=0.0011;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 134448506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.828;LDAF=0.1686;AVGPOST=0.9748;RSQ=0.9305;ERATE=0.0011;THETA=0.0012;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 134448519 . C CA 780 PASS INDEL;BAVGPOST=0.576;BRSQ=0.104;LDAF=0.6963;AVGPOST=0.7117;RSQ=0.4203;ERATE=0.0173;THETA=0.0008;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 134448594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0141;AVGPOST=0.9973;RSQ=0.9203;ERATE=0.0004;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134448900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134449367 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8687;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134449572 . ATCAAT A 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8541;ERATE=0.0004;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134449613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134449638 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.954;LDAF=0.0267;AVGPOST=0.9959;RSQ=0.9370;ERATE=0.0004;THETA=0.0017;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134449751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.906;LDAF=0.1657;AVGPOST=0.9853;RSQ=0.9631;ERATE=0.0005;THETA=0.0010;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 134449824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.731;LDAF=0.0085;AVGPOST=0.9965;RSQ=0.8466;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134449833 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4567;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134449889 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7813;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134449897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0219;AVGPOST=0.9977;RSQ=0.9600;ERATE=0.0004;THETA=0.0011;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134449939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.666;LDAF=0.0095;AVGPOST=0.9922;RSQ=0.6636;ERATE=0.0016;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134450433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.577;LDAF=0.0061;AVGPOST=0.9953;RSQ=0.6893;ERATE=0.0007;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134450442 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.807;LDAF=0.0126;AVGPOST=0.9953;RSQ=0.8603;ERATE=0.0008;THETA=0.0021;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134450605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7085;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134450671 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3854;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134450740 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.762;LDAF=0.0068;AVGPOST=0.9981;RSQ=0.8832;ERATE=0.0004;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134450754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.659;LDAF=0.0687;AVGPOST=0.9320;RSQ=0.5753;ERATE=0.0197;THETA=0.0016;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134450761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8670;ERATE=0.0004;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134450773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5317;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134450796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4431;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134450920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9719;ERATE=0.0003;THETA=0.0025;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134450962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.5815;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134451124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7005;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134451134 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6368;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134451144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8124;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134451159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134451251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0814;AVGPOST=0.9982;RSQ=0.9904;ERATE=0.0003;THETA=0.0011;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 134451283 . GC G 89 PASS INDEL;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7748;ERATE=0.0004;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134451332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.947;LDAF=0.1639;AVGPOST=0.9828;RSQ=0.9552;ERATE=0.0011;THETA=0.0017;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134451373 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0054;AVGPOST=0.9937;RSQ=0.5195;ERATE=0.0007;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134451414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.813;LDAF=0.0094;AVGPOST=0.9957;RSQ=0.8097;ERATE=0.0007;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134451442 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.608;LDAF=0.0084;AVGPOST=0.9918;RSQ=0.5870;ERATE=0.0009;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134451696 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0092;AVGPOST=0.9970;RSQ=0.8507;ERATE=0.0006;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134451725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.1848;ERATE=0.0004;THETA=0.0012;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134451742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6671;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134451743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0116;AVGPOST=0.9989;RSQ=0.9598;ERATE=0.0004;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134451839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9490;ERATE=0.0005;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134451872 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4488;ERATE=0.0007;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134452023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0034;AVGPOST=0.9954;RSQ=0.4483;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134452039 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.496;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.4637;ERATE=0.0007;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134452042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9321;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134452158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0194;AVGPOST=0.9985;RSQ=0.9683;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134452174 . AAG A 203 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6626;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134452196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0064;AVGPOST=0.9976;RSQ=0.8641;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134452224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0003;THETA=0.0038;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134452270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8696;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134452318 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0034;AVGPOST=0.9950;RSQ=0.4192;ERATE=0.0008;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134452347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9283;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134452541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4656;ERATE=0.0004;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134452695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.686;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9485;ERATE=0.0004;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134452721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9251;ERATE=0.0004;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134452748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134452785 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9090;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134452831 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9981;RSQ=0.9418;ERATE=0.0006;THETA=0.0013;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134452966 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7845;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134453110 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.880;LDAF=0.0103;AVGPOST=0.9947;RSQ=0.8101;ERATE=0.0006;THETA=0.0018;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134453136 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.865;LDAF=0.0229;AVGPOST=0.9826;RSQ=0.7255;ERATE=0.0008;THETA=0.0019;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134453173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.907;LDAF=0.1614;AVGPOST=0.9606;RSQ=0.8916;ERATE=0.0021;THETA=0.0011;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 134453175 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.732;LDAF=0.0161;AVGPOST=0.9779;RSQ=0.4693;ERATE=0.0020;THETA=0.0036;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134453179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.540;LDAF=0.0263;AVGPOST=0.9807;RSQ=0.7233;ERATE=0.0008;THETA=0.0020;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134453181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.954;LDAF=0.1033;AVGPOST=0.9853;RSQ=0.9363;ERATE=0.0007;THETA=0.0017;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 134453209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0041;AVGPOST=0.9979;RSQ=0.7772;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134453250 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134453422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.953;LDAF=0.0516;AVGPOST=0.9970;RSQ=0.9808;ERATE=0.0005;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134453610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7649;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134453642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7704;ERATE=0.0006;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134453643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134453773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134453889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7277;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134453914 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6535;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134453915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0508;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0011;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134453982 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0002;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134454284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.7695;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134454342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0510;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0002;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134454372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134454413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9377;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134454533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5423;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134454539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1048;AVGPOST=0.9970;RSQ=0.9886;ERATE=0.0003;THETA=0.0007;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 134454574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1544;AVGPOST=0.9979;RSQ=0.9936;ERATE=0.0004;THETA=0.0007;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 134454612 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134454645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9148;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134454745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6074;ERATE=0.0013;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134454994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8699;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134455262 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9825;ERATE=0.0003;THETA=0.0011;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134455316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134455408 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134455517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6772;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134455676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7041;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134455685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134455740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0002;THETA=0.0011;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134455794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134455832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0212;AVGPOST=0.9994;RSQ=0.9869;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134455844 . CCTTATTCAG C 542 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0040;AVGPOST=0.9970;RSQ=0.7111;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134455944 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0116;AVGPOST=0.9973;RSQ=0.9026;ERATE=0.0005;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134456028 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6027;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134456130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134456146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0371;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0002;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 134456152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3197;ERATE=0.0008;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134456246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8417;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134456415 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8398;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134456507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0002;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134456637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0508;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 134456804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2263;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0002;THETA=0.0006;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 134456932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5545;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134456968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9993;RSQ=0.9743;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134456993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0375;AVGPOST=0.9989;RSQ=0.9868;ERATE=0.0004;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 134457011 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9967;RSQ=0.9071;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134457163 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9089;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134457196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9832;ERATE=0.0002;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134457263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9811;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134457301 rs112330830 GT G 1581 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9410;ERATE=0.0004;THETA=0.0013;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134457345 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6387;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134457491 . G GT 2987 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0311;AVGPOST=0.9990;RSQ=0.9853;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134457596 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1879;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0004;THETA=0.0006;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 134457653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9987;RSQ=0.9145;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134457877 rs10573412 TCA T 1399 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9978;RSQ=0.9404;ERATE=0.0004;THETA=0.0014;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134457881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6742;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134457886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.854;LDAF=0.0147;AVGPOST=0.9973;RSQ=0.9309;ERATE=0.0003;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134457898 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0049;AVGPOST=0.9986;RSQ=0.8893;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134458018 . TGTC T 4596 PASS INDEL;BAVGPOST=0.980;BRSQ=0.749;LDAF=0.0395;AVGPOST=0.9857;RSQ=0.8663;ERATE=0.0003;THETA=0.0021;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 134458035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134458053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0390;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0009;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134458107 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8023;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134458173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134458209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134458211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8425;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134458262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0002;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134458522 . G GCCTC 18088 PASS INDEL;BAVGPOST=0.923;BRSQ=0.849;LDAF=0.2642;AVGPOST=0.9620;RSQ=0.9390;ERATE=0.0011;THETA=0.0007;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 134458526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.918;LDAF=0.2849;AVGPOST=0.9695;RSQ=0.9543;ERATE=0.0010;THETA=0.0048;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 134458529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0073;AVGPOST=0.9985;RSQ=0.9283;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134458617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6827;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134458673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134458681 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0279;AVGPOST=0.9968;RSQ=0.9553;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134458717 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6239;AVGPOST=0.9936;RSQ=0.9909;ERATE=0.0004;THETA=0.0003;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 134458739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5667;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134458786 . T TC 118 PASS INDEL;BAVGPOST=0.974;BRSQ=0.285;LDAF=0.0197;AVGPOST=0.9746;RSQ=0.5124;ERATE=0.0013;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134458865 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.666;LDAF=0.0476;AVGPOST=0.9674;RSQ=0.7586;ERATE=0.0006;THETA=0.0070;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134458881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.664;LDAF=0.0510;AVGPOST=0.9671;RSQ=0.7719;ERATE=0.0005;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134458882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.700;LDAF=0.0597;AVGPOST=0.9622;RSQ=0.7775;ERATE=0.0004;THETA=0.0049;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134458893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.896;LDAF=0.4647;AVGPOST=0.9490;RSQ=0.9339;ERATE=0.0015;THETA=0.0043;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 134458895 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0097;AVGPOST=0.9952;RSQ=0.7827;ERATE=0.0008;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134458939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.912;LDAF=0.1790;AVGPOST=0.9441;RSQ=0.8745;ERATE=0.0043;THETA=0.0009;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 134458959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.841;BRSQ=0.648;LDAF=0.2648;AVGPOST=0.8469;RSQ=0.7317;ERATE=0.0073;THETA=0.0029;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 134458989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.839;LDAF=0.1229;AVGPOST=0.9693;RSQ=0.8976;ERATE=0.0009;THETA=0.0057;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 134458993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.388;LDAF=0.0104;AVGPOST=0.9866;RSQ=0.4959;ERATE=0.0014;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134459023 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.883;BRSQ=0.499;LDAF=0.0951;AVGPOST=0.9136;RSQ=0.6419;ERATE=0.0006;THETA=0.0038;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 134459064 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.8922;ERATE=0.0005;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134459128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0060;AVGPOST=0.9973;RSQ=0.8117;ERATE=0.0005;THETA=0.0030;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134459158 . G GCGTATA 29258 PASS INDEL;BAVGPOST=0.875;BRSQ=0.781;LDAF=0.2615;AVGPOST=0.8985;RSQ=0.8260;ERATE=0.0007;THETA=0.0005;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 134459170 . C CGTATAG 22499 PASS INDEL;BAVGPOST=0.888;BRSQ=0.779;LDAF=0.2445;AVGPOST=0.9037;RSQ=0.8257;ERATE=0.0004;THETA=0.0004;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 134459171 . G GTATACT 10806 PASS INDEL;BAVGPOST=0.888;BRSQ=0.779;LDAF=0.2488;AVGPOST=0.9006;RSQ=0.8212;ERATE=0.0007;THETA=0.0006;AC=525;AN=2184 GT:DS:GL:BD 0.24038461 0 1 134459172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0150;AVGPOST=0.9952;RSQ=0.8673;ERATE=0.0007;THETA=0.0053;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134459177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.535;LDAF=0.1156;AVGPOST=0.8912;RSQ=0.5822;ERATE=0.0181;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 134459181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.832;LDAF=0.1415;AVGPOST=0.9570;RSQ=0.8854;ERATE=0.0005;THETA=0.0008;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 134459223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.832;LDAF=0.1380;AVGPOST=0.9586;RSQ=0.8868;ERATE=0.0008;THETA=0.0007;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 134459231 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.834;LDAF=0.1348;AVGPOST=0.9612;RSQ=0.8939;ERATE=0.0006;THETA=0.0047;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 134459232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.3693;ERATE=0.0007;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134459317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.791;BRSQ=0.631;LDAF=0.2686;AVGPOST=0.8089;RSQ=0.6861;ERATE=0.0125;THETA=0.0013;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 134459320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.334;LDAF=0.1243;AVGPOST=0.8638;RSQ=0.5594;ERATE=0.0056;THETA=0.0015;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 134459353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0048;AVGPOST=0.9971;RSQ=0.7606;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134459390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.800;LDAF=0.0069;AVGPOST=0.9977;RSQ=0.8874;ERATE=0.0003;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134459410 . T TG 185 PASS INDEL;BAVGPOST=0.990;BRSQ=0.632;LDAF=0.0196;AVGPOST=0.9814;RSQ=0.6263;ERATE=0.0030;THETA=0.0035;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134459430 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1844;AVGPOST=0.9947;RSQ=0.9862;ERATE=0.0005;THETA=0.0010;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 134459484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134459521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6593;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134459570 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.632;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5014;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134459595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.857;LDAF=0.3906;AVGPOST=0.9155;RSQ=0.8840;ERATE=0.0059;THETA=0.0007;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 134459613 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6123;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134459652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6252;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134459668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5951;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134459677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1755;AVGPOST=0.9899;RSQ=0.9741;ERATE=0.0005;THETA=0.0008;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 134459733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0103;AVGPOST=0.9968;RSQ=0.8743;ERATE=0.0005;THETA=0.0023;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134459827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4816;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134459958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.723;LDAF=0.0080;AVGPOST=0.9955;RSQ=0.7938;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134460016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.660;LDAF=0.0154;AVGPOST=0.9875;RSQ=0.7054;ERATE=0.0020;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134460031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3987;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134460066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.4421;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134460167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.442;LDAF=0.0110;AVGPOST=0.9888;RSQ=0.6151;ERATE=0.0010;THETA=0.0037;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134460180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0130;AVGPOST=0.9968;RSQ=0.9096;ERATE=0.0004;THETA=0.0017;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134460198 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.874;BRSQ=0.760;LDAF=0.7644;AVGPOST=0.9118;RSQ=0.8440;ERATE=0.0039;THETA=0.0031;AC=1701;AN=2184 GT:DS:GL:BD 0.77884614 1 1 134460281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0054;AVGPOST=0.9974;RSQ=0.8008;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134460309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0033;AVGPOST=0.9960;RSQ=0.4471;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134460311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.470;LDAF=0.7860;AVGPOST=0.7805;RSQ=0.4779;ERATE=0.0388;THETA=0.0002;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 134460367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.740;LDAF=0.0116;AVGPOST=0.9952;RSQ=0.8397;ERATE=0.0005;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134460417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6474;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134460423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.885;LDAF=0.4463;AVGPOST=0.9122;RSQ=0.8736;ERATE=0.0105;THETA=0.0008;AC=996;AN=2184 GT:DS:GL:BD 0.45604396 0 1 134460456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.866;BRSQ=0.781;LDAF=0.3780;AVGPOST=0.8493;RSQ=0.7786;ERATE=0.0068;THETA=0.0025;AC=844;AN=2184 GT:DS:GL:BD 0.38644689 0 1 134460482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1216;AVGPOST=0.9939;RSQ=0.9790;ERATE=0.0004;THETA=0.0029;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 134460687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0136;AVGPOST=0.9971;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134460717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.0124;AVGPOST=0.9971;RSQ=0.9066;ERATE=0.0003;THETA=0.0018;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134460750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.790;LDAF=0.0114;AVGPOST=0.9954;RSQ=0.8424;ERATE=0.0006;THETA=0.0037;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134460786 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.8989;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134460813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0108;AVGPOST=0.9959;RSQ=0.8515;ERATE=0.0004;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134460839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9546;ERATE=0.0005;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134460898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0140;AVGPOST=0.9989;RSQ=0.9644;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134460912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134460940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.916;LDAF=0.1807;AVGPOST=0.9883;RSQ=0.9692;ERATE=0.0009;THETA=0.0047;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 134460965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4467;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134461051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9628;ERATE=0.0003;THETA=0.0039;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134461092 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3456;AVGPOST=0.9926;RSQ=0.9882;ERATE=0.0006;THETA=0.0036;AC=754;AN=2184 GT:DS:GL:BD 0.34523809 0 1 134461107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.646;LDAF=0.0069;AVGPOST=0.9945;RSQ=0.6904;ERATE=0.0003;THETA=0.0052;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134461145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.733;LDAF=0.0095;AVGPOST=0.9932;RSQ=0.7340;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134461146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0128;AVGPOST=0.9975;RSQ=0.9323;ERATE=0.0003;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134461226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.815;LDAF=0.1555;AVGPOST=0.9678;RSQ=0.9209;ERATE=0.0007;THETA=0.0058;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 134461431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.826;LDAF=0.2641;AVGPOST=0.9204;RSQ=0.8740;ERATE=0.0012;THETA=0.0018;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 134461469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.815;LDAF=0.2527;AVGPOST=0.9263;RSQ=0.8799;ERATE=0.0008;THETA=0.0005;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 134461470 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.682;LDAF=0.0060;AVGPOST=0.9949;RSQ=0.6322;ERATE=0.0011;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134461482 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.3420;ERATE=0.0009;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134461492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.829;BRSQ=0.730;LDAF=0.6680;AVGPOST=0.8067;RSQ=0.7153;ERATE=0.0133;THETA=0.0007;AC=1540;AN=2184 GT:DS:GL:BD 0.70512819 1 1 134461606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.858;BRSQ=0.679;LDAF=0.2938;AVGPOST=0.8097;RSQ=0.6475;ERATE=0.0392;THETA=0.0052;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 134461632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0031;AVGPOST=0.9947;RSQ=0.3519;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134461635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0214;AVGPOST=0.9947;RSQ=0.9022;ERATE=0.0006;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134461648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.788;LDAF=0.0767;AVGPOST=0.9614;RSQ=0.8085;ERATE=0.0006;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 134461679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.750;LDAF=0.0724;AVGPOST=0.9590;RSQ=0.7841;ERATE=0.0008;THETA=0.0030;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 134461690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.750;LDAF=0.0676;AVGPOST=0.9622;RSQ=0.7908;ERATE=0.0007;THETA=0.0084;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 134461691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1533;AVGPOST=0.9837;RSQ=0.9574;ERATE=0.0006;THETA=0.0008;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 134461733 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.1550;AVGPOST=0.9826;RSQ=0.9537;ERATE=0.0007;THETA=0.0007;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 134461759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.897;LDAF=0.1814;AVGPOST=0.9766;RSQ=0.9459;ERATE=0.0012;THETA=0.0033;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 134461801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.908;LDAF=0.1782;AVGPOST=0.9798;RSQ=0.9529;ERATE=0.0006;THETA=0.0028;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 134461807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0138;AVGPOST=0.9974;RSQ=0.9317;ERATE=0.0003;THETA=0.0029;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134461854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.865;LDAF=0.1451;AVGPOST=0.9736;RSQ=0.9267;ERATE=0.0012;THETA=0.0033;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 134461855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.884;LDAF=0.2958;AVGPOST=0.9511;RSQ=0.9251;ERATE=0.0005;THETA=0.0007;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 134461892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.464;LDAF=0.0100;AVGPOST=0.9947;RSQ=0.8100;ERATE=0.0004;THETA=0.0027;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134461895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.889;LDAF=0.2701;AVGPOST=0.9530;RSQ=0.9231;ERATE=0.0004;THETA=0.0015;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134461896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.930;LDAF=0.1546;AVGPOST=0.9818;RSQ=0.9531;ERATE=0.0011;THETA=0.0006;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 134461919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.836;LDAF=0.2112;AVGPOST=0.9577;RSQ=0.9151;ERATE=0.0010;THETA=0.0052;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 134461920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.882;LDAF=0.1995;AVGPOST=0.9634;RSQ=0.9220;ERATE=0.0009;THETA=0.0085;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 134461931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134461945 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.919;LDAF=0.0273;AVGPOST=0.9974;RSQ=0.9662;ERATE=0.0003;THETA=0.0011;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134461955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.5995;AVGPOST=0.9764;RSQ=0.9669;ERATE=0.0015;THETA=0.0006;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 134461963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5635;ERATE=0.0004;THETA=0.0084;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134461985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0122;AVGPOST=0.9968;RSQ=0.8841;ERATE=0.0005;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134461988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.897;LDAF=0.0160;AVGPOST=0.9920;RSQ=0.8034;ERATE=0.0015;THETA=0.0041;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134461992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0153;AVGPOST=0.9947;RSQ=0.8739;ERATE=0.0005;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134462023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5467;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134462104 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5197;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134462112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.678;LDAF=0.0645;AVGPOST=0.9484;RSQ=0.6851;ERATE=0.0082;THETA=0.0016;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 134462129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.746;LDAF=0.0580;AVGPOST=0.9591;RSQ=0.7333;ERATE=0.0052;THETA=0.0032;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 134462162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.815;LDAF=0.0464;AVGPOST=0.9803;RSQ=0.8603;ERATE=0.0005;THETA=0.0048;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 134462164 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.841;LDAF=0.5867;AVGPOST=0.8716;RSQ=0.8174;ERATE=0.0122;THETA=0.0007;AC=1332;AN=2184 GT:DS:GL:BD 0.60989010 1 1 134462185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.783;LDAF=0.0740;AVGPOST=0.9705;RSQ=0.8510;ERATE=0.0007;THETA=0.0071;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 134462193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.924;LDAF=0.0246;AVGPOST=0.9895;RSQ=0.8189;ERATE=0.0014;THETA=0.0009;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134462221 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.805;LDAF=0.2244;AVGPOST=0.8902;RSQ=0.7856;ERATE=0.0161;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 134462247 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.539;LDAF=0.0979;AVGPOST=0.9041;RSQ=0.5985;ERATE=0.0091;THETA=0.0029;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 134462251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.556;LDAF=0.1258;AVGPOST=0.8772;RSQ=0.5685;ERATE=0.0159;THETA=0.0009;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 134462259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.594;LDAF=0.0432;AVGPOST=0.9590;RSQ=0.6048;ERATE=0.0037;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134462267 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.683;LDAF=0.1835;AVGPOST=0.8967;RSQ=0.7527;ERATE=0.0068;THETA=0.0016;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 134462306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.710;LDAF=0.6791;AVGPOST=0.8530;RSQ=0.7855;ERATE=0.0142;THETA=0.0009;AC=1547;AN=2184 GT:DS:GL:BD 0.70833331 1 1 134462330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.851;LDAF=0.1848;AVGPOST=0.9455;RSQ=0.8862;ERATE=0.0008;THETA=0.0010;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 134462392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.754;BRSQ=0.656;LDAF=0.5768;AVGPOST=0.7636;RSQ=0.6739;ERATE=0.0378;THETA=0.0050;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 134462393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.934;LDAF=0.3694;AVGPOST=0.9625;RSQ=0.9513;ERATE=0.0007;THETA=0.0048;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 134462511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0068;AVGPOST=0.9918;RSQ=0.5393;ERATE=0.0009;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134462525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.550;LDAF=0.0084;AVGPOST=0.9921;RSQ=0.6027;ERATE=0.0013;THETA=0.0027;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134462527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7315;ERATE=0.0004;THETA=0.0069;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134462548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0256;AVGPOST=0.9986;RSQ=0.9791;ERATE=0.0003;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134462709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.1754;AVGPOST=0.9633;RSQ=0.9074;ERATE=0.0020;THETA=0.0024;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 134462812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.626;LDAF=0.0048;AVGPOST=0.9941;RSQ=0.4885;ERATE=0.0016;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134462870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0062;AVGPOST=0.9963;RSQ=0.7862;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134462885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.921;LDAF=0.3821;AVGPOST=0.9701;RSQ=0.9590;ERATE=0.0016;THETA=0.0018;AC=850;AN=2184 GT:DS:GL:BD 0.38919413 0 1 134462933 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134462970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0272;AVGPOST=0.9984;RSQ=0.9751;ERATE=0.0004;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134462971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0352;AVGPOST=0.9881;RSQ=0.8623;ERATE=0.0010;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134463155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.3980;AVGPOST=0.9843;RSQ=0.9782;ERATE=0.0010;THETA=0.0006;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 134463192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134463268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0040;AVGPOST=0.9961;RSQ=0.6597;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134463275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5797;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134463276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.974;LDAF=0.8360;AVGPOST=0.9920;RSQ=0.9780;ERATE=0.0004;THETA=0.0004;AC=1827;AN=2184 GT:DS:GL:BD 0.83653843 1 1 134463281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.973;LDAF=0.0487;AVGPOST=0.9964;RSQ=0.9739;ERATE=0.0005;THETA=0.0020;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 134463282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.962;LDAF=0.6954;AVGPOST=0.9792;RSQ=0.9628;ERATE=0.0018;THETA=0.0034;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 134463323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7647;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134463361 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.8478;AVGPOST=0.9953;RSQ=0.9859;ERATE=0.0007;THETA=0.0015;AC=1854;AN=2184 GT:DS:GL:BD 0.84890109 1 1 134463376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.947;LDAF=0.3710;AVGPOST=0.9519;RSQ=0.9375;ERATE=0.0039;THETA=0.0007;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 134463407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.922;LDAF=0.3673;AVGPOST=0.9584;RSQ=0.9464;ERATE=0.0006;THETA=0.0007;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 134463417 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0025;AVGPOST=0.9958;RSQ=0.3019;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134463434 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0931;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0020;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134463540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0933;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0004;THETA=0.0010;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134463632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0268;AVGPOST=0.9985;RSQ=0.9809;ERATE=0.0003;THETA=0.0013;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134463658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9994;RSQ=0.9713;ERATE=0.0004;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134463717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0932;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0004;THETA=0.0010;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134463849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0164;AVGPOST=0.9988;RSQ=0.9703;ERATE=0.0004;THETA=0.0018;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134463967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7306;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134464244 . G GA 7032 PASS INDEL;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0939;AVGPOST=0.9968;RSQ=0.9856;ERATE=0.0006;THETA=0.0010;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134464281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0924;AVGPOST=0.9986;RSQ=0.9939;ERATE=0.0005;THETA=0.0013;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 134464417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4686;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134464459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0941;AVGPOST=0.9978;RSQ=0.9906;ERATE=0.0006;THETA=0.0019;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 134464599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7908;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134464635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5004;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134464636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6789;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134464659 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134464673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8855;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134464708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6359;ERATE=0.0005;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134464767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0932;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0005;THETA=0.0033;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 134464789 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9993;RSQ=0.9765;ERATE=0.0004;THETA=0.0017;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134464846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134464858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9916;ERATE=0.0003;THETA=0.0032;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134464866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134464951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2024;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0003;THETA=0.0024;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 134465005 . TCTAA T 576 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8645;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134465047 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.758;LDAF=0.0111;AVGPOST=0.9920;RSQ=0.7115;ERATE=0.0013;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134465076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9988;RSQ=0.9725;ERATE=0.0004;THETA=0.0020;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134465145 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0008;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134465174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5706;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134465385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5494;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134465481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0302;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0015;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134465483 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134465537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0410;AVGPOST=0.9994;RSQ=0.9937;ERATE=0.0003;THETA=0.0010;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134465549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0003;THETA=0.0023;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134465571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9420;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134465651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7773;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134465837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134465910 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5348;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134466071 . ATGTC A 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466087 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0019;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134466093 . T TA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466180 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0497;AVGPOST=0.9993;RSQ=0.9933;ERATE=0.0003;THETA=0.0006;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134466223 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0499;AVGPOST=0.9989;RSQ=0.9890;ERATE=0.0004;THETA=0.0028;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134466537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0049;AVGPOST=0.9982;RSQ=0.8508;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134466656 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4815;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134466671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9044;ERATE=0.0004;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134466706 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.1012;AVGPOST=0.9963;RSQ=0.9866;ERATE=0.0004;THETA=0.0016;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 134466827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134466973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5491;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134467005 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0003;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134467114 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9308;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134467119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0077;AVGPOST=0.9962;RSQ=0.8100;ERATE=0.0005;THETA=0.0033;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134467130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134467260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134467339 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134467405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0877;AVGPOST=0.9977;RSQ=0.9884;ERATE=0.0008;THETA=0.0019;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134467564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9630;ERATE=0.0004;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134467569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0016;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134467637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8588;ERATE=0.0005;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134467638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0612;AVGPOST=0.9992;RSQ=0.9948;ERATE=0.0003;THETA=0.0023;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 134467647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1040;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0003;THETA=0.0011;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 134467764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8404;ERATE=0.0017;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134467838 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2025;AVGPOST=0.9976;RSQ=0.9954;ERATE=0.0005;THETA=0.0018;AC=443;AN=2184 GT:DS:GL:BD 0.20283882 0 1 134468007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8761;ERATE=0.0003;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134468085 . CAA C 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5868;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134468147 . GC G 757 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0053;AVGPOST=0.9978;RSQ=0.8600;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134468159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6000;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134468163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0876;AVGPOST=0.9979;RSQ=0.9903;ERATE=0.0004;THETA=0.0016;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134468233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3879;ERATE=0.0006;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134468265 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8041;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134468303 . ATATAT A 411 PASS INDEL;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3975;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134468435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6607;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134468593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8841;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134468750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7933;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134469047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.725;LDAF=0.0084;AVGPOST=0.9912;RSQ=0.5914;ERATE=0.0022;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134469048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6593;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134469051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134469052 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2689;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0006;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 134469105 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2685;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134469182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9185;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134469195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134469209 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7478;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134469322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7183;ERATE=0.0005;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134469355 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6794;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134469357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2695;AVGPOST=0.9953;RSQ=0.9913;ERATE=0.0006;THETA=0.0007;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 134469392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.409;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5179;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134469393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2685;AVGPOST=0.9976;RSQ=0.9950;ERATE=0.0004;THETA=0.0005;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134469401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134469455 . TTAA T 212 PASS INDEL;BAVGPOST=0.998;BRSQ=0.700;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7396;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134469510 . TAAAC T 352 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.4701;ERATE=0.0008;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134469579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4718;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134469591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4009;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134469805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2677;AVGPOST=0.9975;RSQ=0.9950;ERATE=0.0006;THETA=0.0011;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134469847 rs35452781 TC T 17392 PASS INDEL;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2683;AVGPOST=0.9945;RSQ=0.9891;ERATE=0.0014;THETA=0.0008;AC=585;AN=2184 GT:DS:GL:BD 0.26785713 0 1 134469877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134469899 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9632;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134470039 MERGED_DEL_2_6626 TTCTTAAAATTTAATCCTGCTTTTTGTGTGATTCTCACAGTGGGACATTTAACGTATTTTGTTATTGTGGAAATGTAAGCACATTGTCAGTAGGATTTTTATTAAAAAAACGTTTGAATCAGTGTTCTAGAACAGGCAAACTAATTGTATGATGAAAGAAATAAGGACATTGATTCCTAGGTGATGAGTG T . . SV;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0193;AVGPOST=0.9970;RSQ=0.9322;ERATE=0.0006;THETA=0.0013;CIEND=-97;56;CIPOS=-116;41;END=189854118;HOMLEN=0;HOMSEQ;SOURCE=AssembledBreakpoints_189853340_18 GT:DS:GL:BD 0.01785714 0 1 134470069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9997;RSQ=0.9896;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134470119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5854;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134470121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4919;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2798;AVGPOST=0.9915;RSQ=0.9851;ERATE=0.0011;THETA=0.0008;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 134470192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.541;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4553;ERATE=0.0005;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134470347 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470397 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470405 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1637;AVGPOST=0.9967;RSQ=0.9905;ERATE=0.0005;THETA=0.0004;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 134470417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8646;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134470421 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9340;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134470646 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134470725 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2576;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 134470743 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2720;AVGPOST=0.9956;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 134470756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6767;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134470772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0137;AVGPOST=0.9985;RSQ=0.9623;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134470792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9245;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134470958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8441;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134471058 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0182;AVGPOST=0.9990;RSQ=0.9764;ERATE=0.0004;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134471087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5069;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134471107 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9165;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134471138 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0132;AVGPOST=0.9995;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134471264 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3032;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0011;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 134471281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1878;AVGPOST=0.9965;RSQ=0.9916;ERATE=0.0004;THETA=0.0005;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 134471327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2675;AVGPOST=0.9977;RSQ=0.9956;ERATE=0.0004;THETA=0.0010;AC=585;AN=2184 GT:DS:GL:BD 0.26785713 0 1 134471329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.6555;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134471445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8426;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134471581 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8284;ERATE=0.0008;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134471603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.960;LDAF=0.2564;AVGPOST=0.9848;RSQ=0.9737;ERATE=0.0005;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 134471611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.960;LDAF=0.2579;AVGPOST=0.9854;RSQ=0.9755;ERATE=0.0004;THETA=0.0004;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 134471612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0072;AVGPOST=0.9990;RSQ=0.9464;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134471650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134471671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7838;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134471696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.5850;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134471751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134471783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134471865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2863;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 134471875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9421;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134471881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9274;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134471961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2696;AVGPOST=0.9964;RSQ=0.9926;ERATE=0.0010;THETA=0.0020;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 134472012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9693;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134472047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8058;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134472053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9990;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134472055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2647;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0005;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 134472057 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0082;AVGPOST=0.9988;RSQ=0.9307;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134472059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2703;AVGPOST=0.9905;RSQ=0.9823;ERATE=0.0019;THETA=0.0006;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 134472140 . CAATT C 3791 PASS INDEL;BAVGPOST=0.993;BRSQ=0.898;LDAF=0.0271;AVGPOST=0.9964;RSQ=0.9535;ERATE=0.0005;THETA=0.0015;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134472165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5367;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134472187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2684;AVGPOST=0.9967;RSQ=0.9937;ERATE=0.0004;THETA=0.0027;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134472285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0065;AVGPOST=0.9963;RSQ=0.7710;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134472327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2718;AVGPOST=0.9952;RSQ=0.9911;ERATE=0.0006;THETA=0.0009;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 134472369 . G GA 107 PASS INDEL;BAVGPOST=0.957;BRSQ=0.304;LDAF=0.0525;AVGPOST=0.9473;RSQ=0.6006;ERATE=0.0042;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134472376 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5014;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472381 rs71733977 AAT A 2401 PASS INDEL;BAVGPOST=0.964;BRSQ=0.919;LDAF=0.2665;AVGPOST=0.9865;RSQ=0.9733;ERATE=0.0007;THETA=0.0005;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 134472382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7453;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134472383 rs71733977 AT A 18913 PASS INDEL;BAVGPOST=0.982;BRSQ=0.960;LDAF=0.2692;AVGPOST=0.9899;RSQ=0.9807;ERATE=0.0007;THETA=0.0007;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 134472383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472476 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0388;AVGPOST=0.9990;RSQ=0.9868;ERATE=0.0004;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134472496 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0084;AVGPOST=0.9978;RSQ=0.8789;ERATE=0.0006;THETA=0.0029;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134472525 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2730;AVGPOST=0.9966;RSQ=0.9935;ERATE=0.0006;THETA=0.0007;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 134472545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1065;AVGPOST=0.9969;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 134472579 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8127;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134472588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0070;AVGPOST=0.9935;RSQ=0.6757;ERATE=0.0008;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134472602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472647 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5457;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134472693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8793;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134472792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2684;AVGPOST=0.9971;RSQ=0.9939;ERATE=0.0006;THETA=0.0004;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 134472793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4698;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134472841 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.7863;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134473043 rs34038943 CA C 10913 PASS INDEL;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1637;AVGPOST=0.9926;RSQ=0.9786;ERATE=0.0009;THETA=0.0005;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 134473043 . A AT 1391 PASS INDEL;BAVGPOST=0.893;BRSQ=0.669;LDAF=0.1849;AVGPOST=0.9368;RSQ=0.8497;ERATE=0.0012;THETA=0.0009;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 134473068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8289;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134473115 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2725;AVGPOST=0.9966;RSQ=0.9936;ERATE=0.0006;THETA=0.0009;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 134473117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.831;LDAF=0.0129;AVGPOST=0.9959;RSQ=0.8854;ERATE=0.0004;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134473331 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134473371 . A AC 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7276;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134473396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6301;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134473438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2737;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0004;THETA=0.0008;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 134473462 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7324;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134473471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.937;LDAF=0.0259;AVGPOST=0.9973;RSQ=0.9541;ERATE=0.0004;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134473624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134473635 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2601;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 134473743 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.7028;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134473818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134473874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134474026 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134474036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7604;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134474076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7619;AVGPOST=0.9971;RSQ=0.9937;ERATE=0.0003;THETA=0.0007;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 134474132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3848;AVGPOST=0.9964;RSQ=0.9942;ERATE=0.0005;THETA=0.0005;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 134474150 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8385;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134474153 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2598;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 134474259 . TGAA T 244 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6761;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134474349 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8130;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134474369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2368;AVGPOST=0.9974;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 134474471 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6629;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134474535 . CTG C 255 PASS INDEL;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0050;AVGPOST=0.9971;RSQ=0.7850;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134474599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7901;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134474612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6765;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134474674 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9749;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134474680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3854;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 134474716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134474867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134474869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6819;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134474998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2568;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 134475031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.9022;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134475087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134475143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134475161 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134475244 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2602;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 134475271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2042;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 134475316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134475366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.699;LDAF=0.0074;AVGPOST=0.9973;RSQ=0.8547;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134475394 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0126;AVGPOST=0.9980;RSQ=0.9262;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134475488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0123;AVGPOST=0.9959;RSQ=0.8500;ERATE=0.0009;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134475489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0119;AVGPOST=0.9970;RSQ=0.8967;ERATE=0.0006;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134475532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7406;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134475545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2421;AVGPOST=0.9952;RSQ=0.9906;ERATE=0.0007;THETA=0.0002;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 134475771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.766;LDAF=0.0191;AVGPOST=0.9919;RSQ=0.8528;ERATE=0.0004;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134475833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0567;AVGPOST=0.9970;RSQ=0.9794;ERATE=0.0003;THETA=0.0002;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 134475880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5003;AVGPOST=0.9830;RSQ=0.9777;ERATE=0.0028;THETA=0.0002;AC=1097;AN=2184 GT:DS:GL:BD 0.50228935 1 1 134475911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2409;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0005;THETA=0.0002;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 134475973 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2604;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 134476032 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8571;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134476116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7539;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=1646;AN=2184 GT:DS:GL:BD 0.75366300 1 1 134476146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6322;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134476230 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134476251 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0355;AVGPOST=0.9971;RSQ=0.9695;ERATE=0.0003;THETA=0.0019;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134476270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4407;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134476330 . CT C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5381;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134476342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9679;ERATE=0.0002;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134476401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2250;AVGPOST=0.9963;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 134476424 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2044;AVGPOST=0.9965;RSQ=0.9920;ERATE=0.0004;THETA=0.0004;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 134476442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6428;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134476443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1201;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 134476454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134476640 . AG A 247 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7681;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134476727 . AT A 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5270;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134476836 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.491;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5104;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134477068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3864;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 134477121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5504;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134477228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8696;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134477263 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7287;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134477325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8299;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0002;THETA=0.0003;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 134477445 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.861;LDAF=0.0110;AVGPOST=0.9972;RSQ=0.8975;ERATE=0.0002;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134477460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134477461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8298;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 134477470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8280;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134477498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134477516 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1810;AVGPOST=0.9989;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 134477535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9677;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134477558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0002;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134477560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134477654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6584;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134477862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134477865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9972;RSQ=0.5316;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134477904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7531;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134477905 . T TAGATAAGAGAGGCAG 2522 PASS INDEL;BAVGPOST=0.993;BRSQ=0.618;LDAF=0.0118;AVGPOST=0.9916;RSQ=0.7475;ERATE=0.0006;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134478114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6766;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134478222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9002;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134478288 . CA C 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4694;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134478306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0041;AVGPOST=0.9968;RSQ=0.7194;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134478418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4616;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134478430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0003;THETA=0.0037;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134478585 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134478695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7828;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134478787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5539;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134478844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6841;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134478984 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134479124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6721;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134479167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6801;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134479446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134479574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3501;AVGPOST=0.9855;RSQ=0.9759;ERATE=0.0011;THETA=0.0008;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 134479732 rs35772733 G GAT 13338 PASS INDEL;BAVGPOST=0.876;BRSQ=0.782;LDAF=0.3542;AVGPOST=0.9447;RSQ=0.9114;ERATE=0.0024;THETA=0.0007;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 134479801 . A ATG 1626 PASS INDEL;BAVGPOST=0.871;BRSQ=0.764;LDAF=0.3337;AVGPOST=0.8696;RSQ=0.7934;ERATE=0.0095;THETA=0.0007;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 134479812 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.744;LDAF=0.1914;AVGPOST=0.9000;RSQ=0.7757;ERATE=0.0062;THETA=0.0005;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 134479821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.226;LDAF=0.1031;AVGPOST=0.8764;RSQ=0.4809;ERATE=0.0030;THETA=0.0006;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 134479829 . A AAT 130 PASS INDEL;BAVGPOST=0.931;BRSQ=0.075;LDAF=0.0986;AVGPOST=0.8654;RSQ=0.4286;ERATE=0.0050;THETA=0.0019;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 134479853 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.831;BRSQ=0.093;LDAF=0.2000;AVGPOST=0.7201;RSQ=0.2806;ERATE=0.0208;THETA=0.0020;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 134479873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.060;LDAF=0.0687;AVGPOST=0.9052;RSQ=0.4420;ERATE=0.0036;THETA=0.0009;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134479880 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.576;BRSQ=0.108;LDAF=0.3305;AVGPOST=0.7038;RSQ=0.4462;ERATE=0.0212;THETA=0.0008;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 134479883 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.071;LDAF=0.1354;AVGPOST=0.8262;RSQ=0.4279;ERATE=0.0061;THETA=0.0010;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 134479893 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.615;BRSQ=0.051;LDAF=0.2144;AVGPOST=0.7709;RSQ=0.4486;ERATE=0.0097;THETA=0.0028;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 134479903 . AAT A 74 PASS INDEL;BAVGPOST=0.663;BRSQ=0.013;LDAF=0.1874;AVGPOST=0.7414;RSQ=0.3182;ERATE=0.0138;THETA=0.0011;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 134479911 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.637;BRSQ=0.045;LDAF=0.2177;AVGPOST=0.7728;RSQ=0.4640;ERATE=0.0070;THETA=0.0011;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134479913 . AT A 400 PASS INDEL;BAVGPOST=0.687;BRSQ=0.035;LDAF=0.2073;AVGPOST=0.7142;RSQ=0.2909;ERATE=0.0168;THETA=0.0013;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 134479922 . TA T 1545 PASS INDEL;BAVGPOST=0.399;BRSQ=0.033;LDAF=0.2567;AVGPOST=0.7098;RSQ=0.3751;ERATE=0.0135;THETA=0.0010;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 134479929 . T TA 133 PASS INDEL;BAVGPOST=0.684;BRSQ=0.018;LDAF=0.2205;AVGPOST=0.6881;RSQ=0.2468;ERATE=0.0246;THETA=0.0010;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 134479959 rs55887960 A AT 165 PASS INDEL;BAVGPOST=0.729;BRSQ=0.020;LDAF=0.1944;AVGPOST=0.7564;RSQ=0.3579;ERATE=0.0111;THETA=0.0014;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 134479962 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.405;BRSQ=0.023;LDAF=0.3240;AVGPOST=0.6107;RSQ=0.2507;ERATE=0.0332;THETA=0.0012;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 134480031 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.439;BRSQ=0.011;LDAF=0.2585;AVGPOST=0.6759;RSQ=0.2922;ERATE=0.0213;THETA=0.0007;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 134480059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.703;BRSQ=0.010;LDAF=0.1393;AVGPOST=0.7977;RSQ=0.3384;ERATE=0.0056;THETA=0.0012;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134480067 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.586;BRSQ=0.027;LDAF=0.3462;AVGPOST=0.5981;RSQ=0.2352;ERATE=0.0345;THETA=0.0027;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 134480161 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.474;BRSQ=0.019;LDAF=0.3203;AVGPOST=0.6429;RSQ=0.2758;ERATE=0.0289;THETA=0.0010;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 134480167 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.556;BRSQ=0.025;LDAF=0.2476;AVGPOST=0.6895;RSQ=0.2958;ERATE=0.0212;THETA=0.0009;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 134480189 . T TAA 202 PASS INDEL;BAVGPOST=0.576;BRSQ=0.016;LDAF=0.2322;AVGPOST=0.6946;RSQ=0.2760;ERATE=0.0167;THETA=0.0013;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 134480331 . AAT A 165 PASS INDEL;BAVGPOST=0.656;BRSQ=0.027;LDAF=0.1875;AVGPOST=0.7399;RSQ=0.3046;ERATE=0.0136;THETA=0.0012;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 134480395 . AAT A 1799 PASS INDEL;BAVGPOST=0.449;BRSQ=0.050;LDAF=0.3940;AVGPOST=0.7812;RSQ=0.6309;ERATE=0.0065;THETA=0.0010;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 134480417 . AAT A 5667 PASS INDEL;BAVGPOST=0.948;BRSQ=0;LDAF=0.9050;AVGPOST=0.8483;RSQ=0.3016;ERATE=0.0082;THETA=0.0007;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 134480439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0057;AVGPOST=0.9951;RSQ=0.6326;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134480661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5179;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134480790 . CT C 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134480853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3555;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134480896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9632;ERATE=0.0004;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134480897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1580;AVGPOST=0.9971;RSQ=0.9917;ERATE=0.0004;THETA=0.0006;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 134480924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8372;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134480975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8995;ERATE=0.0007;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134481055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7452;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134481091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9497;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134481121 . GT G 390 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9713;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134481179 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4765;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134481388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1815;AVGPOST=0.9985;RSQ=0.9959;ERATE=0.0003;THETA=0.0017;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 134481558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.401;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6491;ERATE=0.0009;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134481688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134481773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9713;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134481861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7011;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134481903 . T TTATA 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134481918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1473;AVGPOST=0.9985;RSQ=0.9952;ERATE=0.0006;THETA=0.0005;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 134481964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134482031 rs75338276 G GC 70812 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.7737;AVGPOST=0.9809;RSQ=0.9636;ERATE=0.0009;THETA=0.0006;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 134482044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134482175 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0028;AVGPOST=0.9966;RSQ=0.4923;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134482288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1830;AVGPOST=0.9961;RSQ=0.9907;ERATE=0.0005;THETA=0.0008;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 134482444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3747;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134482473 . ATACT A 721 PASS INDEL;BAVGPOST=0.995;BRSQ=0.795;LDAF=0.0147;AVGPOST=0.9893;RSQ=0.7147;ERATE=0.0018;THETA=0.0011;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134482484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.545;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.8234;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134482705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1472;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0010;AC=321;AN=2184 GT:DS:GL:BD 0.14697802 0 1 134482860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.760;LDAF=0.0071;AVGPOST=0.9975;RSQ=0.8537;ERATE=0.0005;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134482920 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7519;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134482941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.8964;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134482953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8351;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134482954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1586;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 134483151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5585;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134483157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134483241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1024;AVGPOST=0.9963;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 134483242 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134483402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9731;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134483438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134483560 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134483573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4252;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134483652 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9737;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134483679 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5364;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134483726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134483873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134483906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9177;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134483990 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1770;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134484059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134484094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6207;AVGPOST=0.9962;RSQ=0.9938;ERATE=0.0007;THETA=0.0004;AC=1357;AN=2184 GT:DS:GL:BD 0.62133700 1 1 134484308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134484463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7737;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484581 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484621 . T TA 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7011;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134484676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7929;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134484780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6584;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134484856 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134484929 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7393;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134485095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134485145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6068;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134485266 . GT G 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4962;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134485300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6737;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134485311 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4853;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134485337 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8181;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134485571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7348;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134485591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134485876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134485906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7212;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134486000 rs35825145 AT A 66808 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6399;AVGPOST=0.9951;RSQ=0.9916;ERATE=0.0005;THETA=0.0003;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 134486050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134486222 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7183;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134486223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134486257 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0184;AVGPOST=0.9956;RSQ=0.9139;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134486261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0093;AVGPOST=0.9993;RSQ=0.9667;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134486276 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7839;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134486291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134486331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9584;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134486506 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7167;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134486543 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6442;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0009;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 134486643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9203;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134486747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134486762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134487105 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134487218 . G GA 155 PASS INDEL;BAVGPOST=0.992;BRSQ=0.558;LDAF=0.0191;AVGPOST=0.9840;RSQ=0.6825;ERATE=0.0014;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134487540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.593;LDAF=0.0070;AVGPOST=0.9951;RSQ=0.7103;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134487676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.971;LDAF=0.6503;AVGPOST=0.9635;RSQ=0.9461;ERATE=0.0039;THETA=0.0003;AC=1427;AN=2184 GT:DS:GL:BD 0.65338826 1 1 134487692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7802;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134487711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5906;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134487828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134488141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5814;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 134488200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134488282 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5611;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134488287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9313;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134488424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0373;AVGPOST=0.9992;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 134488523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134488576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.916;LDAF=0.0255;AVGPOST=0.9960;RSQ=0.9383;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134488715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0738;AVGPOST=0.9982;RSQ=0.9889;ERATE=0.0004;THETA=0.0006;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 134488959 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134489079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0101;AVGPOST=0.9979;RSQ=0.9286;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134489157 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9382;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134489168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0958;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0002;THETA=0.0006;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134489314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0226;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0002;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134489317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0956;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134489370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4611;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134489376 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.938;LDAF=0.0431;AVGPOST=0.9979;RSQ=0.9799;ERATE=0.0003;THETA=0.0003;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 134489381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.2371;AVGPOST=0.9915;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 134489400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7567;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134489431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.986;LDAF=0.5574;AVGPOST=0.9863;RSQ=0.9817;ERATE=0.0015;THETA=0.0009;AC=1219;AN=2184 GT:DS:GL:BD 0.55815017 1 1 134489504 rs71715780 A AT 17175 PASS INDEL;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.2487;AVGPOST=0.9971;RSQ=0.9943;ERATE=0.0003;THETA=0.0006;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 134489531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0957;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0002;THETA=0.0004;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134489552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7458;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134489553 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134489707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0961;AVGPOST=0.9991;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134489747 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5156;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134489844 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0975;AVGPOST=0.9980;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 134489898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134489920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0235;AVGPOST=0.9984;RSQ=0.9740;ERATE=0.0003;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134489945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134489958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0728;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 134489971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8927;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134490049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0047;AVGPOST=0.9972;RSQ=0.7827;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134490101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134490103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7206;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134490126 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0957;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0004;THETA=0.0002;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134490245 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0203;AVGPOST=0.9979;RSQ=0.9548;ERATE=0.0004;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134490283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6421;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134490300 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7313;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134490309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0730;AVGPOST=0.9988;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 134490333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7950;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134490360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0963;AVGPOST=0.9942;RSQ=0.9778;ERATE=0.0009;THETA=0.0003;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134490462 rs11277294 AATAATT A 5813 PASS INDEL;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0391;AVGPOST=0.9972;RSQ=0.9735;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134490769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7564;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134490788 . TAA T 351 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9322;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134490799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0589;AVGPOST=0.9984;RSQ=0.9882;ERATE=0.0004;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 134490903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9675;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134490976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7962;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134490977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134491139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134491258 . GT G 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9964;RSQ=0.4174;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134491304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8028;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134491325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0957;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134491336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0568;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134491400 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.5717;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134491416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7735;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134491517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7702;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134491523 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.706;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8362;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134491675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0338;AVGPOST=0.9992;RSQ=0.9885;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134491690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8846;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134491781 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1541;AVGPOST=0.9988;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 134491840 . CTT C 738 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134491864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4278;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134491875 . GTT G 336 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8450;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134491881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0958;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0004;THETA=0.0009;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 134491948 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134491988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0233;AVGPOST=0.9980;RSQ=0.9699;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134492004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0434;AVGPOST=0.9988;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134492019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8477;ERATE=0.0003;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134492191 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7278;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134492192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4340;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134492504 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0212;AVGPOST=0.9943;RSQ=0.9064;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134492584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8299;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134492591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0085;AVGPOST=0.9975;RSQ=0.8675;ERATE=0.0004;THETA=0.0022;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134492872 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3102;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134492974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0339;AVGPOST=0.9997;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134493042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0120;AVGPOST=0.9979;RSQ=0.9186;ERATE=0.0008;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134493118 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134493310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0734;AVGPOST=0.9982;RSQ=0.9887;ERATE=0.0005;THETA=0.0011;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 134493323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8642;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134493367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.968;LDAF=0.0296;AVGPOST=0.9963;RSQ=0.9521;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134493622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134493682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4468;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134493784 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5798;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134493785 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4437;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134493828 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7066;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134493849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0385;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0010;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134493897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.796;LDAF=0.0187;AVGPOST=0.9932;RSQ=0.8640;ERATE=0.0011;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134493923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4963;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134494075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5512;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134494191 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8686;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134494336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9628;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134494341 . AG A 329 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8720;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134494379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134494460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0599;AVGPOST=0.9994;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 134494525 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9993;RSQ=0.9625;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134494571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134494599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1927;AVGPOST=0.9982;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 134494620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0665;AVGPOST=0.9991;RSQ=0.9932;ERATE=0.0002;THETA=0.0005;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 134494624 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7681;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=1677;AN=2184 GT:DS:GL:BD 0.76785713 1 1 134494636 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8534;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134494736 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134494768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134494777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134494940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.9017;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134494941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8115;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134494963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134494972 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8667;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134495093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134495213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7631;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=1666;AN=2184 GT:DS:GL:BD 0.76282054 1 1 134495269 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7369;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134495316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8957;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134495391 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0064;AVGPOST=0.9966;RSQ=0.7671;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134495461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6893;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134495628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8366;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134495743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9874;ERATE=0.0002;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134495858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9155;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134496125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0697;AVGPOST=0.9993;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 134496151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7763;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=1696;AN=2184 GT:DS:GL:BD 0.77655679 1 1 134496156 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134496175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7687;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134496190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0749;AVGPOST=0.9989;RSQ=0.9944;ERATE=0.0003;THETA=0.0010;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 134496430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0178;AVGPOST=0.9984;RSQ=0.9628;ERATE=0.0004;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134496443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0178;AVGPOST=0.9983;RSQ=0.9612;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134496444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.787;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8711;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134496458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0044;AVGPOST=0.9989;RSQ=0.8851;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134496470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.8395;AVGPOST=0.9948;RSQ=0.9857;ERATE=0.0005;THETA=0.0007;AC=1835;AN=2184 GT:DS:GL:BD 0.84020144 1 1 134496588 . T TC 166 PASS INDEL;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7549;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134496592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0002;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134496614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.7552;AVGPOST=0.9963;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=1651;AN=2184 GT:DS:GL:BD 0.75595236 1 1 134496653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4796;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134496661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0124;AVGPOST=0.9994;RSQ=0.9773;ERATE=0.0002;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134496786 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8587;ERATE=0.0004;THETA=0.0049;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134496823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4227;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134496824 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0736;AVGPOST=0.9953;RSQ=0.9719;ERATE=0.0006;THETA=0.0018;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 134496933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.831;LDAF=0.0112;AVGPOST=0.9950;RSQ=0.8112;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134497014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.2279;AVGPOST=0.9915;RSQ=0.9838;ERATE=0.0004;THETA=0.0037;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 134497025 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134497245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6791;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134497341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2665;AVGPOST=0.9927;RSQ=0.9862;ERATE=0.0005;THETA=0.0011;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 134497354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8354;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134497389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0040;AVGPOST=0.9962;RSQ=0.6253;ERATE=0.0006;THETA=0.0032;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134497461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8138;ERATE=0.0003;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134497544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0451;AVGPOST=0.9975;RSQ=0.9826;ERATE=0.0003;THETA=0.0009;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 134497585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6671;ERATE=0.0004;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134497617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.2294;AVGPOST=0.9930;RSQ=0.9834;ERATE=0.0004;THETA=0.0092;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 134497624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497674 . G GA 221 PASS INDEL;BAVGPOST=0.988;BRSQ=0.559;LDAF=0.0215;AVGPOST=0.9745;RSQ=0.5258;ERATE=0.0060;THETA=0.0039;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134497687 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0091;AVGPOST=0.9955;RSQ=0.8021;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134497697 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.8919;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134497768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497819 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.966;LDAF=0.2292;AVGPOST=0.9788;RSQ=0.9547;ERATE=0.0012;THETA=0.0054;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 134497866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0186;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134497927 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0195;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0183;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134497964 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0218;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134497994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.909;LDAF=0.7683;AVGPOST=0.9622;RSQ=0.9281;ERATE=0.0006;THETA=0.0471;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 134497998 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0264;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134498035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0321;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134498190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8330;ERATE=0.0004;THETA=0.0225;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134498269 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.851;LDAF=0.4884;AVGPOST=0.9101;RSQ=0.8732;ERATE=0.0228;THETA=0.0297;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 134498335 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9028;ERATE=0.0004;THETA=0.0242;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134498684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0004;THETA=0.0066;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134498843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0364;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134498862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7717;ERATE=0.0005;THETA=0.0276;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134498879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.7792;AVGPOST=0.9577;RSQ=0.9117;ERATE=0.0015;THETA=0.0093;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 134498880 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5600;ERATE=0.0006;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134498884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134498912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0003;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134499047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134499131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134499247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7935;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134499265 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6141;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134499271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134499277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8158;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134499342 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0161;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134499362 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7597;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134499400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0082;AVGPOST=0.9989;RSQ=0.9452;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134499477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0204;AVGPOST=0.9989;RSQ=0.9804;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134499496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6973;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134499657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0098;AVGPOST=0.9967;RSQ=0.8632;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134499696 . TC T 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4981;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134499817 . ATG A 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134499937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8693;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134500024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0861;AVGPOST=0.9990;RSQ=0.9946;ERATE=0.0003;THETA=0.0008;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 134500035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9848;AVGPOST=0.9983;RSQ=0.9554;ERATE=0.0004;THETA=0.0002;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 134500176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0097;AVGPOST=0.9946;RSQ=0.8068;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134500218 . CTT C 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7942;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134500272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0032;AVGPOST=0.9956;RSQ=0.5270;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134500421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134500430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8085;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134500509 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.787;LDAF=0.0042;AVGPOST=0.9974;RSQ=0.7501;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134500530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0088;AVGPOST=0.9991;RSQ=0.9551;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134500657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9772;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134500785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134500998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.5967;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134501055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6993;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134501077 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9375;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134501107 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8217;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134501122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9769;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134501148 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134501171 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9822;ERATE=0.0004;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134501210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0003;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134501294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8559;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134501304 . AAC A 273 PASS INDEL;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7106;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134501366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0359;AVGPOST=0.9994;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 134501476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7008;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134501481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5471;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134501552 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.7986;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134501623 . G GA 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.4607;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134501706 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7499;AVGPOST=0.9974;RSQ=0.9952;ERATE=0.0005;THETA=0.0006;AC=1638;AN=2184 GT:DS:GL:BD 0.75000000 1 1 134501830 . C CA 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6575;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134501862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7986;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134501958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.909;LDAF=0.0158;AVGPOST=0.9960;RSQ=0.8942;ERATE=0.0007;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134502082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6753;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134502099 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134502147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7225;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134502174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134502195 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134502251 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134502407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4437;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134502618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134502734 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0372;AVGPOST=0.9979;RSQ=0.9743;ERATE=0.0006;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134502783 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.2414;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134502965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.831;LDAF=0.0437;AVGPOST=0.9879;RSQ=0.8878;ERATE=0.0004;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134502997 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6230;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134503140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134503427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4576;AVGPOST=0.9899;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=997;AN=2184 GT:DS:GL:BD 0.45650184 0 1 134503460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134503473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134503633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134503685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9638;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134503709 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8151;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134503711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0143;AVGPOST=0.9982;RSQ=0.9443;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134503878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0073;AVGPOST=0.9970;RSQ=0.8364;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134503882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.8059;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134503934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134503968 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9381;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134504074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7008;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134504134 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134504152 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134504175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7293;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134504297 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134504395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134504457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.6044;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134504513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134504600 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134504936 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0002;THETA=0.0013;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134504983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134505357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134505436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134505742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8829;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134505752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9701;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134505800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9323;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134505824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7513;ERATE=0.0003;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134505923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134505953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9853;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134505967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134506069 rs76696884 GTA G 8853 PASS INDEL;BAVGPOST=0.972;BRSQ=0.795;LDAF=0.0692;AVGPOST=0.9676;RSQ=0.8233;ERATE=0.0010;THETA=0.0009;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 134506126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.5436;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134506140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8029;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134506219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134506414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0076;AVGPOST=0.9980;RSQ=0.9006;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134506449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7205;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134506458 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5240;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134506723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0131;AVGPOST=0.9964;RSQ=0.8940;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134506750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0168;AVGPOST=0.9956;RSQ=0.8948;ERATE=0.0004;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134506828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0035;AVGPOST=0.9963;RSQ=0.5828;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134506859 . T TA 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4853;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134506875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0059;AVGPOST=0.9967;RSQ=0.7502;ERATE=0.0007;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134507114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1243;AVGPOST=0.9969;RSQ=0.9876;ERATE=0.0004;THETA=0.0005;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 134507214 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9238;ERATE=0.0004;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134507236 . G GTCT 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3501;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134507313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9736;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134507413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8218;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134507509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.944;LDAF=0.0781;AVGPOST=0.9841;RSQ=0.9166;ERATE=0.0016;THETA=0.0006;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 134507576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.521;LDAF=0.0030;AVGPOST=0.9951;RSQ=0.4167;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134507678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0056;AVGPOST=0.9966;RSQ=0.7704;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134507861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4441;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134507971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9375;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134507985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5101;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134508021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6742;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134508042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7355;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134508044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1318;AVGPOST=0.9990;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 134508130 . ACT A 607 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9830;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134508276 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134508345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134508476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6856;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134508484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134508639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0201;AVGPOST=0.9993;RSQ=0.9834;ERATE=0.0002;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134508645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4453;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134508692 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.732;LDAF=0.0267;AVGPOST=0.9884;RSQ=0.8451;ERATE=0.0007;THETA=0.0010;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134508701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.687;LDAF=0.0061;AVGPOST=0.9954;RSQ=0.6770;ERATE=0.0009;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134508729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9485;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134508890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0066;AVGPOST=0.9993;RSQ=0.9504;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134509115 . CT C 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5274;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134509197 . CATG C 582 PASS INDEL;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7860;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134509237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5417;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134509308 rs35196129 TA T 10955 PASS INDEL;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0838;AVGPOST=0.9989;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134509408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6925;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134509471 . ATTATAC A 1293 PASS INDEL;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0122;AVGPOST=0.9952;RSQ=0.8372;ERATE=0.0007;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134509496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.117;LDAF=0.9802;AVGPOST=0.9675;RSQ=0.3629;ERATE=0.0011;THETA=0.0004;AC=2167;AN=2184 GT:DS:GL:BD 0.99221611 1 1 134509589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0386;AVGPOST=0.9991;RSQ=0.9898;ERATE=0.0004;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134509848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9649;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134509928 . G GC 195 PASS INDEL;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8297;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134510041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134510182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.6239;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 134510322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134510489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1553;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 134510490 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.6372;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134510567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1987;AVGPOST=0.9988;RSQ=0.9972;ERATE=0.0002;THETA=0.0002;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 134510612 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6909;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134510674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134510783 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8258;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134510787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0973;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0002;THETA=0.0004;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 134510830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134510942 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6626;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134510997 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134511088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134511146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6355;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134511160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6977;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134511231 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5817;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134511312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3824;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134511356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0115;AVGPOST=0.9945;RSQ=0.8276;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134511529 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.6222;AVGPOST=0.9975;RSQ=0.9960;ERATE=0.0005;THETA=0.0002;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 134511898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134512054 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3638;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0002;THETA=0.0005;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 134512148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134512160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134512170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134512201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7193;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134512300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3638;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 134512363 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134512402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9355;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134512408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6222;AVGPOST=0.9973;RSQ=0.9960;ERATE=0.0007;THETA=0.0003;AC=1360;AN=2184 GT:DS:GL:BD 0.62271065 1 1 134512475 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7701;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134512517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5321;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134512548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9636;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134512607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0069;AVGPOST=0.9973;RSQ=0.8614;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134512628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2199;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0005;THETA=0.0002;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 134512630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134512743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134512769 . CATA C 34 PASS INDEL;BAVGPOST=0.997;BRSQ=0.758;LDAF=0.0072;AVGPOST=0.9963;RSQ=0.7961;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134512864 . ATAAT A 904 PASS INDEL;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0075;AVGPOST=0.9967;RSQ=0.8216;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134512865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3638;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0006;THETA=0.0004;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 134512898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8252;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134512960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134512965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2201;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 134512983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8647;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134513050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2200;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0002;THETA=0.0004;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 134513091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134513243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134513261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134513421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134513422 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9845;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134513441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134513632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0407;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134513654 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5450;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134513678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8900;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134513727 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134513930 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134513933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9026;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134513961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3646;AVGPOST=0.9978;RSQ=0.9969;ERATE=0.0007;THETA=0.0003;AC=798;AN=2184 GT:DS:GL:BD 0.36538461 0 1 134513998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134514181 . C CAG 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6246;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134514292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8699;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134514313 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7290;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134514494 . AT A 8433 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0836;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 134514618 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9456;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134514663 . CT C 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6649;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134514875 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0834;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 134514901 . TA T 2609 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134514902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134514964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134515029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134515093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9981;RSQ=0.8748;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134515136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134515265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5011;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134515367 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134515480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8179;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134515562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3103;AVGPOST=0.9954;RSQ=0.9923;ERATE=0.0005;THETA=0.0004;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 134515675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8410;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134515700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134515840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3300;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 134515850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0761;AVGPOST=0.9976;RSQ=0.9878;ERATE=0.0004;THETA=0.0003;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 134515854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0118;AVGPOST=0.9995;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134516027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6087;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134516134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0072;AVGPOST=0.9988;RSQ=0.9373;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134516171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9407;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134516269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134516517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134516529 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7599;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134516537 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1048;AVGPOST=0.9975;RSQ=0.9898;ERATE=0.0004;THETA=0.0004;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 134516595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9501;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134516722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0091;AVGPOST=0.9990;RSQ=0.9560;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134516825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7091;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134516827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3301;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 134516869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134516905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134516941 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134516997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1051;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 134517002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9131;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134517023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9661;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134517045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134517124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4721;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0004;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 134517245 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0600;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134517305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6279;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517306 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7828;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9178;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134517344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9567;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7928;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517430 . CTTAA C 559 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7669;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134517444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7854;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134517559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6959;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134517614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134517687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4948;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 134517755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6876;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134517811 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5892;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134517893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134517921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.8065;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134517930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.858;LDAF=0.0476;AVGPOST=0.9915;RSQ=0.9280;ERATE=0.0003;THETA=0.0007;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 134518027 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9235;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134518102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.765;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9064;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134518123 . AATT A 380 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0083;AVGPOST=0.9961;RSQ=0.7998;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134518130 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9436;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134518158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7891;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134518180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.802;LDAF=0.0132;AVGPOST=0.9964;RSQ=0.8929;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134518273 . TTC T 36 PASS INDEL;BAVGPOST=0.974;BRSQ=0.380;LDAF=0.0652;AVGPOST=0.9175;RSQ=0.4919;ERATE=0.0059;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134518284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8286;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134518359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5591;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134518386 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5051;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134518441 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0763;AVGPOST=0.9979;RSQ=0.9886;ERATE=0.0004;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 134518591 . GTTTA G 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4662;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134518616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6898;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134518738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.856;LDAF=0.0156;AVGPOST=0.9963;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134518755 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134518810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134518841 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8752;AVGPOST=0.9981;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 134518939 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2155;AVGPOST=0.9916;RSQ=0.9811;ERATE=0.0008;THETA=0.0009;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 134519036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0846;AVGPOST=0.9982;RSQ=0.9915;ERATE=0.0003;THETA=0.0009;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 134519072 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8692;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134519129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8742;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134519204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8620;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134519252 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5777;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134519376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134519573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5067;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134519774 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134519972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134519990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8565;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134520113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134520188 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9366;ERATE=0.0003;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134520251 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9666;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134520276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7941;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134520333 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7947;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134520346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.955;LDAF=0.7834;AVGPOST=0.9741;RSQ=0.9487;ERATE=0.0021;THETA=0.0003;AC=1719;AN=2184 GT:DS:GL:BD 0.78708792 1 1 134520509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4841;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134520557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3866;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134520569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0122;AVGPOST=0.9940;RSQ=0.8107;ERATE=0.0007;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134520577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8134;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134520586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4708;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134520636 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0164;AVGPOST=0.9963;RSQ=0.9179;ERATE=0.0006;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134520650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134520685 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134520753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9990;RSQ=0.9555;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134520883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134521004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9126;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134521104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8758;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134521117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1329;AVGPOST=0.9973;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134521193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134521199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0009;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134521239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6781;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134521289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134521430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134521585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8520;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134521721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0458;AVGPOST=0.9941;RSQ=0.9457;ERATE=0.0004;THETA=0.0013;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 134521776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134521780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4923;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134521805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.980;LDAF=0.7977;AVGPOST=0.9932;RSQ=0.9858;ERATE=0.0007;THETA=0.0013;AC=1744;AN=2184 GT:DS:GL:BD 0.79853481 1 1 134521813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0151;AVGPOST=0.9990;RSQ=0.9780;ERATE=0.0003;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134521834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9239;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134521845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.6094;AVGPOST=0.9901;RSQ=0.9834;ERATE=0.0021;THETA=0.0005;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 134521906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.7415;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134522128 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0073;AVGPOST=0.9948;RSQ=0.7578;ERATE=0.0003;THETA=0.0054;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134522141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.7945;AVGPOST=0.9923;RSQ=0.9828;ERATE=0.0007;THETA=0.0039;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 134522307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8170;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134522517 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.941;LDAF=0.0220;AVGPOST=0.9981;RSQ=0.9693;ERATE=0.0004;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134522589 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134522597 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.946;LDAF=0.0138;AVGPOST=0.9975;RSQ=0.9327;ERATE=0.0003;THETA=0.0027;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134522777 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0087;AVGPOST=0.9991;RSQ=0.9591;ERATE=0.0003;THETA=0.0027;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134522877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6769;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134523093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.965;LDAF=0.8157;AVGPOST=0.9878;RSQ=0.9741;ERATE=0.0005;THETA=0.0040;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 134523179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8075;ERATE=0.0003;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6093;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1225;AVGPOST=0.9942;RSQ=0.9849;ERATE=0.0003;THETA=0.0058;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 134523220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8801;ERATE=0.0003;THETA=0.0130;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134523289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0151;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5853;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5795;ERATE=0.0004;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134523526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8978;ERATE=0.0004;THETA=0.0173;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134523548 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.905;LDAF=0.1227;AVGPOST=0.9775;RSQ=0.9230;ERATE=0.0005;THETA=0.0117;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 134523647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5948;ERATE=0.0004;THETA=0.0115;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134523875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.7012;ERATE=0.0003;THETA=0.0227;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134523885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7797;ERATE=0.0003;THETA=0.0215;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134523902 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.918;LDAF=0.8117;AVGPOST=0.9702;RSQ=0.9433;ERATE=0.0013;THETA=0.0049;AC=1785;AN=2184 GT:DS:GL:BD 0.81730771 1 1 134523950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7304;ERATE=0.0006;THETA=0.0224;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134523989 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.915;LDAF=0.0527;AVGPOST=0.9922;RSQ=0.9401;ERATE=0.0005;THETA=0.0158;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134524069 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134524139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6377;ERATE=0.0007;THETA=0.0088;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134524370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6164;ERATE=0.0005;THETA=0.0102;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134524568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134524585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9258;ERATE=0.0003;THETA=0.0068;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134524696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4279;ERATE=0.0004;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134524790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134524837 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9214;ERATE=0.0005;THETA=0.0136;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134524978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0126;AVGPOST=0.9990;RSQ=0.9684;ERATE=0.0003;THETA=0.0061;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134525086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134525173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5796;ERATE=0.0004;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134525236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.800;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8305;ERATE=0.0003;THETA=0.0050;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134525291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.951;LDAF=0.5522;AVGPOST=0.9634;RSQ=0.9493;ERATE=0.0054;THETA=0.0006;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 134525318 . T TG 9912 PASS INDEL;BAVGPOST=0.955;BRSQ=0.927;LDAF=0.5292;AVGPOST=0.9521;RSQ=0.9341;ERATE=0.0027;THETA=0.0014;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 134525335 rs72043811 G GC 42791 PASS INDEL;BAVGPOST=0.969;BRSQ=0.950;LDAF=0.5405;AVGPOST=0.9601;RSQ=0.9460;ERATE=0.0026;THETA=0.0019;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 134525338 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.2393;AVGPOST=0.9758;RSQ=0.9587;ERATE=0.0030;THETA=0.0035;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 134525381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134525386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0311;AVGPOST=0.9985;RSQ=0.9786;ERATE=0.0004;THETA=0.0042;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134525587 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7038;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134525614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.9225;ERATE=0.0003;THETA=0.0052;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134525623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9248;ERATE=0.0003;THETA=0.0046;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134525653 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.4783;ERATE=0.0006;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134525690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134525701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.595;LDAF=0.0305;AVGPOST=0.9716;RSQ=0.6307;ERATE=0.0110;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134525733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7666;ERATE=0.0003;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134525767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9061;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134525832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0253;AVGPOST=0.9987;RSQ=0.9804;ERATE=0.0003;THETA=0.0016;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134526003 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7813;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134526278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8516;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134526316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.974;LDAF=0.0649;AVGPOST=0.9964;RSQ=0.9791;ERATE=0.0007;THETA=0.0077;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 134526391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134526447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0150;AVGPOST=0.9976;RSQ=0.9327;ERATE=0.0005;THETA=0.0037;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134526543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6971;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134526755 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0325;AVGPOST=0.9987;RSQ=0.9828;ERATE=0.0004;THETA=0.0023;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134526928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134526996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7956;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134527195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0390;AVGPOST=0.9978;RSQ=0.9750;ERATE=0.0004;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134527326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134527357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134527412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.960;LDAF=0.8177;AVGPOST=0.9835;RSQ=0.9622;ERATE=0.0006;THETA=0.0039;AC=1789;AN=2184 GT:DS:GL:BD 0.81913918 1 1 134527662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0303;AVGPOST=0.9987;RSQ=0.9819;ERATE=0.0004;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134527773 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134528025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.987;LDAF=0.3118;AVGPOST=0.9935;RSQ=0.9899;ERATE=0.0004;THETA=0.0011;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134528121 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134528139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.967;LDAF=0.5696;AVGPOST=0.9841;RSQ=0.9749;ERATE=0.0011;THETA=0.0015;AC=1245;AN=2184 GT:DS:GL:BD 0.57005495 1 1 134528180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0003;THETA=0.0042;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134528181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9635;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134528267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134528291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134528310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0390;AVGPOST=0.9968;RSQ=0.9671;ERATE=0.0003;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134528358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3070;AVGPOST=0.9874;RSQ=0.9793;ERATE=0.0012;THETA=0.0085;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 134528425 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0161;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134528498 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.488;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6326;ERATE=0.0006;THETA=0.0084;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134528524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0074;AVGPOST=0.9986;RSQ=0.9247;ERATE=0.0004;THETA=0.0076;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134528574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.7129;ERATE=0.0007;THETA=0.0146;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134528602 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0079;AVGPOST=0.9972;RSQ=0.8402;ERATE=0.0005;THETA=0.0162;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134528652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.766;LDAF=0.0072;AVGPOST=0.9943;RSQ=0.6990;ERATE=0.0009;THETA=0.0100;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134528667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.625;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7378;ERATE=0.0006;THETA=0.0130;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134528714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.733;LDAF=0.0346;AVGPOST=0.9748;RSQ=0.7009;ERATE=0.0059;THETA=0.0191;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134528719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0179;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134528807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8751;ERATE=0.0003;THETA=0.0155;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134528871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8784;ERATE=0.0006;THETA=0.0063;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134528899 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7744;ERATE=0.0003;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134529030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.803;LDAF=0.0221;AVGPOST=0.9916;RSQ=0.8497;ERATE=0.0009;THETA=0.0136;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134529035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.7608;ERATE=0.0006;THETA=0.0163;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134529084 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.825;BRSQ=0.699;LDAF=0.6465;AVGPOST=0.8283;RSQ=0.7406;ERATE=0.0180;THETA=0.0112;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 134529233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4140;ERATE=0.0004;THETA=0.0091;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134529246 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.9019;ERATE=0.0004;THETA=0.0196;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134529298 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0191;AVGPOST=0.9963;RSQ=0.9149;ERATE=0.0009;THETA=0.0216;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134529329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7584;ERATE=0.0003;THETA=0.0189;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134529340 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9203;ERATE=0.0003;THETA=0.0195;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134529352 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.723;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6764;ERATE=0.0010;THETA=0.0314;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134529520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4790;ERATE=0.0006;THETA=0.0317;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134529532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134529661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9521;ERATE=0.0004;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134529684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6133;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134529791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5651;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134529829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134529831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9362;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134529942 . A ACATT 130 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.857;LDAF=0.0117;AVGPOST=0.9962;RSQ=0.8676;ERATE=0.0004;THETA=0.0015;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134530438 . CT C 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0151;AVGPOST=0.9990;RSQ=0.9710;ERATE=0.0003;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134530603 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4888;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134530625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134530746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5193;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134531022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0712;AVGPOST=0.9985;RSQ=0.9925;ERATE=0.0003;THETA=0.0038;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 134531050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.913;LDAF=0.0157;AVGPOST=0.9969;RSQ=0.9193;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134531098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134531424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5027;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134531446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7901;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134531459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6365;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134531479 . TC T 222 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134531515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.744;LDAF=0.0122;AVGPOST=0.9931;RSQ=0.7844;ERATE=0.0007;THETA=0.0030;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134531529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4904;ERATE=0.0003;THETA=0.0040;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134531566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.6996;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134531575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.878;LDAF=0.0139;AVGPOST=0.9956;RSQ=0.8681;ERATE=0.0006;THETA=0.0051;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134531676 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6729;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134531688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4989;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134531710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8825;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134531729 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6255;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134531887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0086;AVGPOST=0.9965;RSQ=0.8546;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134531928 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9294;ERATE=0.0003;THETA=0.0040;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134531986 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0058;AVGPOST=0.9987;RSQ=0.9269;ERATE=0.0011;THETA=0.0031;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134532027 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0715;AVGPOST=0.9985;RSQ=0.9924;ERATE=0.0004;THETA=0.0019;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 134532048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9086;ERATE=0.0004;THETA=0.0070;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134532124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8795;ERATE=0.0003;THETA=0.0087;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134532161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134532170 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134532200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.441;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5325;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134532306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8052;ERATE=0.0008;THETA=0.0085;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9119;ERATE=0.0003;THETA=0.0084;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134532395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9808;ERATE=0.0003;THETA=0.0052;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134532402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0012;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7902;ERATE=0.0003;THETA=0.0104;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134532573 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7329;ERATE=0.0003;THETA=0.0042;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.955;LDAF=0.9586;AVGPOST=0.9941;RSQ=0.9471;ERATE=0.0005;THETA=0.0008;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 134532631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9546;ERATE=0.0003;THETA=0.0140;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134532698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134532730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9204;ERATE=0.0004;THETA=0.0087;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134532761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.5096;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134532948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7236;ERATE=0.0004;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134532981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.768;LDAF=0.2724;AVGPOST=0.9160;RSQ=0.8428;ERATE=0.0139;THETA=0.0029;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 134533032 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.785;LDAF=0.1705;AVGPOST=0.9335;RSQ=0.8242;ERATE=0.0059;THETA=0.0080;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 134533071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4785;ERATE=0.0005;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134533118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9081;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134533243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0003;THETA=0.0056;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134533267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.846;LDAF=0.1463;AVGPOST=0.9565;RSQ=0.8669;ERATE=0.0111;THETA=0.0005;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 134533310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.898;LDAF=0.5905;AVGPOST=0.9457;RSQ=0.9223;ERATE=0.0053;THETA=0.0057;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 134533478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134533525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0094;AVGPOST=0.9972;RSQ=0.8921;ERATE=0.0005;THETA=0.0126;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134533530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6824;ERATE=0.0006;THETA=0.0081;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134533608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9184;ERATE=0.0003;THETA=0.0059;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134533684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0114;AVGPOST=0.9990;RSQ=0.9625;ERATE=0.0005;THETA=0.0066;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134533716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5193;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134533754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0047;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134533758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5849;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134533800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.0978;AVGPOST=0.9855;RSQ=0.9430;ERATE=0.0006;THETA=0.0036;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134533819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8263;ERATE=0.0004;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134533849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0076;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134533968 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6436;ERATE=0.0004;THETA=0.0098;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134534106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6334;ERATE=0.0003;THETA=0.0104;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9503;ERATE=0.0003;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134534135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8504;ERATE=0.0003;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134534136 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134534139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0057;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134534211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8219;ERATE=0.0004;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134534224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0064;AVGPOST=0.9982;RSQ=0.8920;ERATE=0.0003;THETA=0.0071;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134534280 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.893;LDAF=0.0261;AVGPOST=0.9950;RSQ=0.9242;ERATE=0.0005;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134534373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7283;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134534504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0199;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134534518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7290;AVGPOST=0.9955;RSQ=0.9920;ERATE=0.0004;THETA=0.0029;AC=1593;AN=2184 GT:DS:GL:BD 0.72939563 1 1 134534647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0113;AVGPOST=0.9992;RSQ=0.9668;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134534655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134534679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.7656;AVGPOST=0.9946;RSQ=0.9889;ERATE=0.0004;THETA=0.0025;AC=1672;AN=2184 GT:DS:GL:BD 0.76556778 1 1 134534758 . GC G 746 PASS INDEL;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0077;AVGPOST=0.9961;RSQ=0.8080;ERATE=0.0004;THETA=0.0025;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134534835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3240;AVGPOST=0.9951;RSQ=0.9917;ERATE=0.0005;THETA=0.0010;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 134534862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.4220;AVGPOST=0.9918;RSQ=0.9893;ERATE=0.0004;THETA=0.0045;AC=922;AN=2184 GT:DS:GL:BD 0.42216116 0 1 134534867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0163;AVGPOST=0.9994;RSQ=0.9851;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134534899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134535067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.3429;AVGPOST=0.9948;RSQ=0.9913;ERATE=0.0004;THETA=0.0005;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 134535175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6983;AVGPOST=0.9932;RSQ=0.9896;ERATE=0.0007;THETA=0.0014;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 134535178 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134535197 rs34888124 A AT 31415 PASS INDEL;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.3353;AVGPOST=0.9871;RSQ=0.9793;ERATE=0.0012;THETA=0.0006;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 134535205 rs72163117 C CT 257 PASS INDEL;BAVGPOST=0.490;BRSQ=0.101;LDAF=0.5625;AVGPOST=0.7008;RSQ=0.4992;ERATE=0.0141;THETA=0.0088;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 134535359 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3149;AVGPOST=0.9941;RSQ=0.9891;ERATE=0.0007;THETA=0.0006;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 134535424 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0754;AVGPOST=0.9941;RSQ=0.9710;ERATE=0.0006;THETA=0.0008;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 134535431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.7130;AVGPOST=0.9728;RSQ=0.9516;ERATE=0.0050;THETA=0.0023;AC=1572;AN=2184 GT:DS:GL:BD 0.71978021 1 1 134535440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0087;AVGPOST=0.9967;RSQ=0.8315;ERATE=0.0004;THETA=0.0053;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134535510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.930;LDAF=0.6940;AVGPOST=0.9562;RSQ=0.9275;ERATE=0.0072;THETA=0.0021;AC=1539;AN=2184 GT:DS:GL:BD 0.70467031 1 1 134535568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9968;RSQ=0.8479;ERATE=0.0007;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134535627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.974;LDAF=0.7170;AVGPOST=0.9831;RSQ=0.9687;ERATE=0.0023;THETA=0.0016;AC=1581;AN=2184 GT:DS:GL:BD 0.72390109 1 1 134535628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134535746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7229;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=1581;AN=2184 GT:DS:GL:BD 0.72390109 1 1 134535803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0151;AVGPOST=0.9981;RSQ=0.9533;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134535842 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7255;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1584;AN=2184 GT:DS:GL:BD 0.72527474 1 1 134535914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7013;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134535932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8613;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134535959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0369;AVGPOST=0.9988;RSQ=0.9906;ERATE=0.0003;THETA=0.0006;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134535989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3813;AVGPOST=0.9972;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 134536143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1248;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134536160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7231;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=1580;AN=2184 GT:DS:GL:BD 0.72344321 1 1 134536222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134536239 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134536325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0249;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134536329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7306;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 134536381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134536413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0072;AVGPOST=0.9981;RSQ=0.8853;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134536421 . AAG A 6802 PASS INDEL;BAVGPOST=0.976;BRSQ=0.842;LDAF=0.0616;AVGPOST=0.9831;RSQ=0.8939;ERATE=0.0006;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 134536493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6554;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134536556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5711;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134536604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5901;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134536638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.829;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9085;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134536849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7604;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134536901 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9869;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134536935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7318;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134536984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7199;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134537124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134537193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134537301 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134537345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0139;AVGPOST=0.9990;RSQ=0.9666;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134537425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.3680;AVGPOST=0.9932;RSQ=0.9887;ERATE=0.0006;THETA=0.0011;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 134537464 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0273;AVGPOST=0.9961;RSQ=0.9424;ERATE=0.0009;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134537563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7272;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134537620 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3378;AVGPOST=0.9910;RSQ=0.9849;ERATE=0.0009;THETA=0.0003;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 134537628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0129;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134537634 rs79671168 A AT 608 PASS INDEL;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0148;AVGPOST=0.9965;RSQ=0.9062;ERATE=0.0007;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134537747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0003;THETA=0.0034;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134537768 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7276;AVGPOST=0.9963;RSQ=0.9924;ERATE=0.0003;THETA=0.0051;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 134537784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0041;AVGPOST=0.9966;RSQ=0.6590;ERATE=0.0008;THETA=0.0020;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134537843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0326;AVGPOST=0.9985;RSQ=0.9790;ERATE=0.0007;THETA=0.0028;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134537866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9996;RSQ=0.9865;ERATE=0.0003;THETA=0.0053;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134537911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134538008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134538059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134538111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0246;AVGPOST=0.9989;RSQ=0.9840;ERATE=0.0003;THETA=0.0018;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134538174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0043;AVGPOST=0.9977;RSQ=0.7935;ERATE=0.0005;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134538481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.954;LDAF=0.2915;AVGPOST=0.9677;RSQ=0.9459;ERATE=0.0008;THETA=0.0110;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 134538631 . A AG 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.529;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0146;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134538891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9352;ERATE=0.0004;THETA=0.0098;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134538910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0046;AVGPOST=0.9975;RSQ=0.7881;ERATE=0.0003;THETA=0.0063;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134538953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0073;AVGPOST=0.9987;RSQ=0.9151;ERATE=0.0005;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134539023 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0164;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134539037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0003;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134539093 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.494;LDAF=0.0244;AVGPOST=0.9734;RSQ=0.5501;ERATE=0.0063;THETA=0.0152;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134539149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.903;LDAF=0.2778;AVGPOST=0.9569;RSQ=0.9288;ERATE=0.0009;THETA=0.0079;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 134539275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.909;LDAF=0.2934;AVGPOST=0.9542;RSQ=0.9291;ERATE=0.0009;THETA=0.0111;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 134539281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.897;LDAF=0.1539;AVGPOST=0.9670;RSQ=0.9105;ERATE=0.0008;THETA=0.0077;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 134539325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.867;LDAF=0.0260;AVGPOST=0.9911;RSQ=0.8570;ERATE=0.0006;THETA=0.0135;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134539346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.803;LDAF=0.0210;AVGPOST=0.9933;RSQ=0.8731;ERATE=0.0031;THETA=0.0237;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134539440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.891;LDAF=0.0562;AVGPOST=0.9863;RSQ=0.9034;ERATE=0.0016;THETA=0.0198;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134539497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0259;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134539601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8588;ERATE=0.0003;THETA=0.0214;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134539607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3055;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0006;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 134539763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3051;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 134539773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.9577;AVGPOST=0.9965;RSQ=0.9737;ERATE=0.0004;THETA=0.0002;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 134539835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7040;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134539907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9224;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134540086 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134540089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134540187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0277;AVGPOST=0.9993;RSQ=0.9875;ERATE=0.0004;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134540261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3054;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 134540273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0263;AVGPOST=0.9994;RSQ=0.9899;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134540465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7407;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134540466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6329;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540614 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0515;AVGPOST=0.9993;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 134540727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134540765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134540954 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8504;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134540960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9122;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134540999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9304;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134541000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134541001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3223;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 134541103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0140;AVGPOST=0.9978;RSQ=0.9517;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134541193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5687;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134541564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134541660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1382;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 134541818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0191;AVGPOST=0.9994;RSQ=0.9878;ERATE=0.0003;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134541903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134541990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134542087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0234;AVGPOST=0.9996;RSQ=0.9933;ERATE=0.0003;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134542121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3756;AVGPOST=0.9963;RSQ=0.9947;ERATE=0.0007;THETA=0.0006;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 134542170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9995;RSQ=0.9826;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134542265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.6495;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134542284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134542303 . T TA 244 PASS INDEL;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8117;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134542462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0110;AVGPOST=0.9994;RSQ=0.9770;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134542596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134542651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134542652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3088;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0010;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 134542688 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134542709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7479;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134542734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6414;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134542808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5726;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134542825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3082;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 134542832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134542837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8765;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134542842 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0263;AVGPOST=0.9996;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134542899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134542903 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134543065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1377;AVGPOST=0.9981;RSQ=0.9937;ERATE=0.0005;THETA=0.0004;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 134543068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134543295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8990;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134543308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134543315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134543407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0068;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134543620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134543682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134543828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9429;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134543866 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134543880 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4978;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134543898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134543923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0156;AVGPOST=0.9985;RSQ=0.9563;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134543948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3101;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0005;THETA=0.0005;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 134544028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8871;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134544130 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7194;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134544310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5556;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134544383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9807;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134544418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134544477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134544486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134544561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134544573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5636;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134544681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9490;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134544751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9459;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134544825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5470;AVGPOST=0.9970;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=1193;AN=2184 GT:DS:GL:BD 0.54624540 1 1 134544950 . TTG T 3145 PASS INDEL;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0174;AVGPOST=0.9977;RSQ=0.9486;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134544966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9574;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134545222 . AAC A 3187 PASS INDEL;BAVGPOST=0.995;BRSQ=0.957;LDAF=0.0607;AVGPOST=0.9953;RSQ=0.9695;ERATE=0.0004;THETA=0.0011;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 134545269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.967;LDAF=0.0574;AVGPOST=0.9949;RSQ=0.9628;ERATE=0.0005;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 134545276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.949;LDAF=0.0582;AVGPOST=0.9917;RSQ=0.9421;ERATE=0.0008;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 134545278 rs72558914 C CAT 51795 PASS INDEL;BAVGPOST=0.971;BRSQ=0.941;LDAF=0.7084;AVGPOST=0.9422;RSQ=0.9054;ERATE=0.0155;THETA=0.0006;AC=1566;AN=2184 GT:DS:GL:BD 0.71703297 1 1 134545291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0114;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134545575 . AACTACC A 166 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9527;ERATE=0.0003;THETA=0.0040;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134545734 . ACTACCACCC A 727 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9384;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134545735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134545777 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134545865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134546029 . T TG 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.5981;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134546158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134546173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134546202 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134546437 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134546444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134546461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134546471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134546522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6878;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 134546644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0275;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134546804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0178;AVGPOST=0.9995;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134546875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9162;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134546894 rs112312142 TGCCTCACC T 126826 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7840;AVGPOST=0.9964;RSQ=0.9921;ERATE=0.0004;THETA=0.0009;AC=1714;AN=2184 GT:DS:GL:BD 0.78479856 1 1 134546998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0342;AVGPOST=0.9990;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134547044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8059;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134547125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8502;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134547131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9596;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134547183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7399;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134547232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134547258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7712;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134547403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9388;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134547450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8444;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134547538 rs5780303 CCT C 97674 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.7521;AVGPOST=0.9963;RSQ=0.9931;ERATE=0.0005;THETA=0.0003;AC=1644;AN=2184 GT:DS:GL:BD 0.75274724 1 1 134547594 rs78885944 TC T 10793 PASS INDEL;BAVGPOST=0.898;BRSQ=0.818;LDAF=0.6136;AVGPOST=0.8499;RSQ=0.7906;ERATE=0.0384;THETA=0.0004;AC=1404;AN=2184 GT:DS:GL:BD 0.64285713 1 1 134547598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134547623 . T TC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4327;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134547641 . CTAAA C 998 PASS INDEL;BAVGPOST=0.998;BRSQ=0.832;LDAF=0.0069;AVGPOST=0.9981;RSQ=0.8912;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134547728 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7586;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0047;AC=1657;AN=2184 GT:DS:GL:BD 0.75869966 1 1 134547799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134547853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9045;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134547866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134547867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0216;AVGPOST=0.9997;RSQ=0.9941;ERATE=0.0003;THETA=0.0013;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134547984 . GC G 16830 PASS INDEL;BAVGPOST=0.916;BRSQ=0.823;LDAF=0.6654;AVGPOST=0.8698;RSQ=0.7915;ERATE=0.0480;THETA=0.0004;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 134548162 rs5780304 CA C 97430 PASS INDEL;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.7697;AVGPOST=0.9950;RSQ=0.9898;ERATE=0.0003;THETA=0.0062;AC=1679;AN=2184 GT:DS:GL:BD 0.76877290 1 1 134548163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134548196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134548401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134548408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9527;ERATE=0.0003;THETA=0.0074;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134548438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9307;ERATE=0.0007;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134548590 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134548716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6711;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134548746 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134548936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134548978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134548986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134549074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.859;LDAF=0.0431;AVGPOST=0.9846;RSQ=0.8582;ERATE=0.0330;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 134549101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134549276 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0130;AVGPOST=0.9993;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134549353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134549525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134549637 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134549718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0524;AVGPOST=0.9979;RSQ=0.9849;ERATE=0.0004;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 134550074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8967;ERATE=0.0004;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134550151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.5930;ERATE=0.0009;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134550247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5392;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134550416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6139;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134550473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0072;AVGPOST=0.9968;RSQ=0.8230;ERATE=0.0005;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134550540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.639;LDAF=0.0076;AVGPOST=0.9938;RSQ=0.6902;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134550542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0735;AVGPOST=0.9988;RSQ=0.9931;ERATE=0.0003;THETA=0.0008;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 134550810 . GCTAA G 4067 PASS INDEL;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0237;AVGPOST=0.9968;RSQ=0.9388;ERATE=0.0019;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134550947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.6607;ERATE=0.0019;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134550972 . C CTT 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3722;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134550991 . TA T 492 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8769;ERATE=0.0003;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134551119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0434;AVGPOST=0.9981;RSQ=0.9823;ERATE=0.0005;THETA=0.0007;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134551316 . GA G 62 PASS INDEL;BAVGPOST=0.994;BRSQ=0.478;LDAF=0.0056;AVGPOST=0.9933;RSQ=0.5078;ERATE=0.0012;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134551342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134551458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5110;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0142;AVGPOST=0.9988;RSQ=0.9693;ERATE=0.0004;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134551833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551864 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134551968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134551971 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8873;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134552010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9979;RSQ=0.9597;ERATE=0.0004;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134552035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134552080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5652;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134552097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7566;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134552169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9074;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134552422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4876;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134552599 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3857;AVGPOST=0.9777;RSQ=0.9657;ERATE=0.0050;THETA=0.0005;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 134552670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0050;AVGPOST=0.9976;RSQ=0.7756;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134552720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134552747 . CG C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6194;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134552801 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134552808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.969;LDAF=0.1144;AVGPOST=0.9896;RSQ=0.9659;ERATE=0.0005;THETA=0.0002;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 134552900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134553001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8440;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134553006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0054;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134553102 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0151;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134553139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134553178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3617;AVGPOST=0.9978;RSQ=0.9959;ERATE=0.0006;THETA=0.0003;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 134553182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5507;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134553288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134553334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7127;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134553362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8937;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134553385 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.7217;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134553436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134553533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134553700 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134553745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0215;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134553808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8078;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134553959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0207;AVGPOST=0.9977;RSQ=0.9564;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134553960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134553973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8099;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134553974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134554005 . T TA 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0022;AVGPOST=0.9971;RSQ=0.4486;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134554050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0064;AVGPOST=0.9975;RSQ=0.8625;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134554076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8075;ERATE=0.0006;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134554084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0037;AVGPOST=0.9953;RSQ=0.5631;ERATE=0.0004;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134554217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0133;AVGPOST=0.9989;RSQ=0.9704;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134554340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554403 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0419;AVGPOST=0.9992;RSQ=0.9926;ERATE=0.0003;THETA=0.0006;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134554405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0728;AVGPOST=0.9985;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 134554512 . ATT A 694 PASS INDEL;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0126;AVGPOST=0.9949;RSQ=0.8330;ERATE=0.0005;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134554512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5735;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7569;ERATE=0.0014;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134554720 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6031;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134554773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134554806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.768;LDAF=0.0076;AVGPOST=0.9949;RSQ=0.7152;ERATE=0.0008;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134554896 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0105;AVGPOST=0.9989;RSQ=0.9556;ERATE=0.0004;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134554923 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0417;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 134554960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134555019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.8061;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134555100 . CCT C 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134555221 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134555305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0385;AVGPOST=0.9987;RSQ=0.9856;ERATE=0.0004;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134555484 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134555684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9467;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134555810 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4884;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134555853 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4265;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134555927 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134556134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134556366 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8445;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134556416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9715;ERATE=0.0004;THETA=0.0001;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134556419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4455;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134556730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134556751 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2330;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 134557186 . TAC T 248 PASS INDEL;BAVGPOST=0.986;BRSQ=0.708;LDAF=0.0364;AVGPOST=0.9647;RSQ=0.5857;ERATE=0.0195;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 134557208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134557222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134557288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0118;AVGPOST=0.9974;RSQ=0.9120;ERATE=0.0006;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134557603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134557604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134557637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134557661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.9976;AVGPOST=0.9960;RSQ=0.2914;ERATE=0.0015;THETA=0.0004;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 134557890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.4105;AVGPOST=0.9778;RSQ=0.9654;ERATE=0.0071;THETA=0.0002;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 134557908 . GC G 128 PASS INDEL;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6579;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134557915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0252;AVGPOST=0.9978;RSQ=0.9673;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 134558075 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9985;RSQ=0.8875;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134558083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2330;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 134558105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0064;AVGPOST=0.9966;RSQ=0.8008;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134558123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134558124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5941;AVGPOST=0.9967;RSQ=0.9948;ERATE=0.0009;THETA=0.0002;AC=1297;AN=2184 GT:DS:GL:BD 0.59386444 1 1 134558145 . G GA 168 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5696;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558162 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2333;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0004;THETA=0.0003;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 134558177 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134558245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7478;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134558278 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2346;AVGPOST=0.9983;RSQ=0.9962;ERATE=0.0004;THETA=0.0002;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 134558284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0705;AVGPOST=0.9973;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 134558326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2331;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 134558433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4631;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0051;AVGPOST=0.9977;RSQ=0.8299;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134558574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0061;AVGPOST=0.9958;RSQ=0.7667;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134558585 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6144;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134558614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7458;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134558730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2330;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 134558739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7692;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134558894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134558981 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3127;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134558998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1849;AVGPOST=0.9960;RSQ=0.9905;ERATE=0.0005;THETA=0.0012;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134559103 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8231;AVGPOST=0.9991;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=1798;AN=2184 GT:DS:GL:BD 0.82326007 1 1 134559175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134559227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134559259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0051;AVGPOST=0.9967;RSQ=0.7844;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134559403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7709;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134559438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8434;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134559455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134559538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5905;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0006;AC=1289;AN=2184 GT:DS:GL:BD 0.59020144 1 1 134559552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2327;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 134559610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9538;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134559688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134559814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9397;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134559850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0114;AVGPOST=0.9969;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134559929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4067;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0005;THETA=0.0002;AC=887;AN=2184 GT:DS:GL:BD 0.40613553 0 1 134559933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9993;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134560029 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0044;AVGPOST=0.9954;RSQ=0.5724;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134560127 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.531;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8517;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134560163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3773;AVGPOST=0.9935;RSQ=0.9900;ERATE=0.0009;THETA=0.0004;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 134560195 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.5341;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134560254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0078;AVGPOST=0.9978;RSQ=0.8703;ERATE=0.0006;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134560287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.937;LDAF=0.0878;AVGPOST=0.9902;RSQ=0.9525;ERATE=0.0005;THETA=0.0002;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 134560288 . A AT 119 PASS INDEL;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3585;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134560339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134560426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134560459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6381;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134560469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134560507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134560508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9415;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=2056;AN=2184 GT:DS:GL:BD 0.94139194 1 1 134560510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134560547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9728;AVGPOST=0.9996;RSQ=0.9934;ERATE=0.0003;THETA=0.0009;AC=2125;AN=2184 GT:DS:GL:BD 0.97298533 1 1 134560621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.9729;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=2125;AN=2184 GT:DS:GL:BD 0.97298533 1 1 134560673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9541;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134560674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7652;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134560715 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3573;AVGPOST=0.9964;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 134560775 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134560861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134560942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134561058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5540;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0003;THETA=0.0008;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 134561119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134561120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134561128 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134561256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134561259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8857;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134561282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8804;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134561535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134561631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0981;AVGPOST=0.9983;RSQ=0.9918;ERATE=0.0005;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 134561709 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5960;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134561729 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9725;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134561794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0030;AVGPOST=0.9969;RSQ=0.6149;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134561856 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8710;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134561991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0989;AVGPOST=0.9987;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 134561998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134562019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134562108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9998;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134562124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5917;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134562227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134562262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8244;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134562298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9761;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134562390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9597;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134562391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134562394 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5709;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134562408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3742;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0007;THETA=0.0008;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 134562424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5571;AVGPOST=0.9984;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=1217;AN=2184 GT:DS:GL:BD 0.55723441 1 1 134562457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134562485 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9862;ERATE=0.0003;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134562577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134562580 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134562642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.890;LDAF=0.0275;AVGPOST=0.9912;RSQ=0.8741;ERATE=0.0006;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134562755 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134562807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134562871 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5179;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134563107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9290;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134563140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134563151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134563240 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2564;AVGPOST=0.9969;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 134563281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134563499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134563566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3738;AVGPOST=0.9969;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 134563578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134563662 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9408;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=2055;AN=2184 GT:DS:GL:BD 0.94093406 1 1 134563692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134563725 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8444;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134563732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134563771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8900;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134563777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134563861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134563933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.9722;AVGPOST=0.9989;RSQ=0.9848;ERATE=0.0004;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 134564060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4701;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134564159 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3797;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 134564225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0309;AVGPOST=0.9986;RSQ=0.9820;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134564234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134564418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7196;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134564479 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134564547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5351;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134564594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6497;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134564636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134564637 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0143;AVGPOST=0.9972;RSQ=0.9170;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134564714 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5829;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134564814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8261;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134564823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9429;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134564928 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5595;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134564975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8037;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134564994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.5538;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 134565117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7893;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134565204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134565355 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134565402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.955;LDAF=0.1825;AVGPOST=0.9872;RSQ=0.9689;ERATE=0.0004;THETA=0.0014;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134565514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.955;LDAF=0.1803;AVGPOST=0.9868;RSQ=0.9686;ERATE=0.0007;THETA=0.0006;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 134565515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134565548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134565602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134565747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134566050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0129;AVGPOST=0.9991;RSQ=0.9672;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134566065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0061;AVGPOST=0.9980;RSQ=0.8742;ERATE=0.0006;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134566139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.477;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6112;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134566242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0023;AVGPOST=0.9962;RSQ=0.3659;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134566282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134566354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7211;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134566395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5214;ERATE=0.0002;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134566497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4738;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134566757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8994;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134566804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9586;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134566856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8753;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134566944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0130;AVGPOST=0.9996;RSQ=0.9856;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134567035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5495;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134567229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6406;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134567246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134567340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.853;LDAF=0.1921;AVGPOST=0.9448;RSQ=0.8656;ERATE=0.0051;THETA=0.0003;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 134567525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0047;AVGPOST=0.9948;RSQ=0.5462;ERATE=0.0006;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134567526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.838;LDAF=0.0318;AVGPOST=0.9875;RSQ=0.8404;ERATE=0.0005;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 134567534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3416;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134567624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.813;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8696;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134567628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0127;AVGPOST=0.9984;RSQ=0.9417;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134567656 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134567798 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4891;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134567866 . GA G 5095 PASS INDEL;BAVGPOST=0.990;BRSQ=0.960;LDAF=0.1165;AVGPOST=0.9672;RSQ=0.8833;ERATE=0.0047;THETA=0.0011;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 134568061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0055;AVGPOST=0.9945;RSQ=0.6219;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134568072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134568105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0048;AVGPOST=0.9973;RSQ=0.7685;ERATE=0.0004;THETA=0.0034;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134568172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9009;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134568195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134568209 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0170;AVGPOST=0.9987;RSQ=0.9746;ERATE=0.0002;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134568380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9890;ERATE=0.0002;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134568416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.5308;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134568422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1424;AVGPOST=0.9977;RSQ=0.9946;ERATE=0.0002;THETA=0.0006;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 134568435 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8660;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134568528 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8891;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134568740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9992;RSQ=0.9863;ERATE=0.0003;THETA=0.0041;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 134568771 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8711;ERATE=0.0004;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134568870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6927;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134568973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134569085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8490;ERATE=0.0003;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134569100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7364;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134569214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134569218 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4716;AVGPOST=0.9957;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 134569287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.986;LDAF=0.4607;AVGPOST=0.9940;RSQ=0.9909;ERATE=0.0011;THETA=0.0001;AC=1008;AN=2184 GT:DS:GL:BD 0.46153846 0 1 134569408 . AGAAG A 2575 PASS INDEL;BAVGPOST=0.995;BRSQ=0.918;LDAF=0.0358;AVGPOST=0.9854;RSQ=0.8508;ERATE=0.0012;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134569440 . AAG A 419 PASS INDEL;BAVGPOST=0.995;BRSQ=0.923;LDAF=0.0249;AVGPOST=0.9975;RSQ=0.9612;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134569454 rs71571931 GA G 32454 PASS INDEL;BAVGPOST=0.912;BRSQ=0.847;LDAF=0.5427;AVGPOST=0.9033;RSQ=0.8621;ERATE=0.0146;THETA=0.0004;AC=1191;AN=2184 GT:DS:GL:BD 0.54532969 1 1 134569560 rs71571931 A AAAG 28939 PASS INDEL;BAVGPOST=0.906;BRSQ=0.779;LDAF=0.3240;AVGPOST=0.8634;RSQ=0.7433;ERATE=0.0621;THETA=0.0005;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 134569561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0154;AVGPOST=0.9996;RSQ=0.9907;ERATE=0.0002;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134569596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1457;AVGPOST=0.9983;RSQ=0.9944;ERATE=0.0003;THETA=0.0010;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 134569635 . AACATGAATAT A 5112 PASS INDEL;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0255;AVGPOST=0.9968;RSQ=0.9527;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 134569638 rs113299860 C CTG 145551 PASS INDEL;BAVGPOST=0.994;BRSQ=0.655;LDAF=0.9876;AVGPOST=0.9877;RSQ=0.6410;ERATE=0.0021;THETA=0.0004;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 134569751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5752;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134569858 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.6267;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134569915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0153;AVGPOST=0.9988;RSQ=0.9683;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134570053 . A ATCT 1852 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9663;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134570092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6253;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134570183 . GTGT G 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134570262 . TG T 368 PASS INDEL;BAVGPOST=0.874;BRSQ=0.352;LDAF=0.1762;AVGPOST=0.7920;RSQ=0.4087;ERATE=0.0402;THETA=0.0006;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 134570372 . G GT 10120 PASS INDEL;BAVGPOST=0.974;BRSQ=0.726;LDAF=0.9459;AVGPOST=0.9803;RSQ=0.8528;ERATE=0.0011;THETA=0.0003;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 134570373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6608;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134570404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5418;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134570474 . T TACAG 8712 PASS INDEL;BAVGPOST=0.996;BRSQ=0.966;LDAF=0.0454;AVGPOST=0.9936;RSQ=0.9452;ERATE=0.0016;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 134570498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4876;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134570570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0002;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134570709 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6092;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134570742 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8333;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134570755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134570756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5158;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134570811 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6326;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134570896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134570906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134570913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134570954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9995;RSQ=0.9875;ERATE=0.0002;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134571003 rs34376952 C CA 18487 PASS INDEL;BAVGPOST=0.984;BRSQ=0.959;LDAF=0.2360;AVGPOST=0.9922;RSQ=0.9836;ERATE=0.0011;THETA=0.0004;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 134571060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134571156 . CACTGT C 3927 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0156;AVGPOST=0.9977;RSQ=0.9435;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134571185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9138;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134571219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0048;AVGPOST=0.9981;RSQ=0.8686;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134571380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134571391 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9454;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 134571412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7222;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134571501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5558;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134571556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9452;AVGPOST=0.9992;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 134571638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5400;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134571692 . ACT A 398 PASS INDEL;BAVGPOST=0.996;BRSQ=0.535;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.7231;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134571710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9555;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134571726 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4880;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134571744 rs10558137 TTAAATA T 5233 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0267;AVGPOST=0.9997;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134571804 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0213;AVGPOST=0.9989;RSQ=0.9780;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134571880 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5718;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134571927 . CATAT C 2167 PASS INDEL;BAVGPOST=0.585;BRSQ=0.259;LDAF=0.6228;AVGPOST=0.6454;RSQ=0.3669;ERATE=0.0489;THETA=0.0004;AC=1501;AN=2184 GT:DS:GL:BD 0.68727106 1 1 134571940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9565;AVGPOST=0.9982;RSQ=0.9844;ERATE=0.0004;THETA=0.0002;AC=2089;AN=2184 GT:DS:GL:BD 0.95650184 1 1 134571941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9351;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134571983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0274;AVGPOST=0.9986;RSQ=0.9792;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134571986 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0273;AVGPOST=0.9984;RSQ=0.9787;ERATE=0.0003;THETA=0.0010;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134572087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.872;LDAF=0.2072;AVGPOST=0.9681;RSQ=0.9423;ERATE=0.0016;THETA=0.0004;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 134572122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0864;AVGPOST=0.9951;RSQ=0.9787;ERATE=0.0004;THETA=0.0009;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 134572144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.582;LDAF=0.0074;AVGPOST=0.9974;RSQ=0.8474;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134572193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0221;AVGPOST=0.9979;RSQ=0.9661;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 134572221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8647;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134572239 . TA T 1569 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0268;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0003;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134572369 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5817;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134572388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0332;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134572523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9647;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134572582 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9430;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134572650 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134572660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7163;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134572676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9876;ERATE=0.0004;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134572727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5992;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134572747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5132;AVGPOST=0.9964;RSQ=0.9944;ERATE=0.0005;THETA=0.0017;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 134572771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.9440;AVGPOST=0.9989;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=2062;AN=2184 GT:DS:GL:BD 0.94413918 1 1 134573017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6599;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134573087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134573161 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7329;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134573185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134573202 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0271;AVGPOST=0.9989;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 134573287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134573418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0200;AVGPOST=0.9993;RSQ=0.9820;ERATE=0.0003;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134573516 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5946;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134573526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134573589 . CTCTG C 171 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8551;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134573701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0109;AVGPOST=0.9984;RSQ=0.9457;ERATE=0.0002;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134573819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8289;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134573840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134573884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9440;AVGPOST=0.9984;RSQ=0.9870;ERATE=0.0005;THETA=0.0001;AC=2063;AN=2184 GT:DS:GL:BD 0.94459707 1 1 134574234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5958;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134574256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.836;LDAF=0.0174;AVGPOST=0.9961;RSQ=0.9014;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134574281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134574285 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134574466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.800;LDAF=0.0167;AVGPOST=0.9950;RSQ=0.9006;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134574782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5124;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0004;THETA=0.0002;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 134574800 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1457;AVGPOST=0.9938;RSQ=0.9809;ERATE=0.0007;THETA=0.0003;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 134574884 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.929;LDAF=0.0269;AVGPOST=0.9976;RSQ=0.9683;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134574897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.647;LDAF=0.0060;AVGPOST=0.9958;RSQ=0.7361;ERATE=0.0006;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134574998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5069;AVGPOST=0.9876;RSQ=0.9841;ERATE=0.0016;THETA=0.0004;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 134575082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5652;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134575131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5989;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134575162 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0262;AVGPOST=0.9989;RSQ=0.9808;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134575168 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.875;LDAF=0.1340;AVGPOST=0.9598;RSQ=0.8710;ERATE=0.0030;THETA=0.0013;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 134575777 rs10601237 GGGGAGA G 1023 PASS INDEL;BAVGPOST=0.933;BRSQ=0.253;LDAF=0.1032;AVGPOST=0.8945;RSQ=0.5814;ERATE=0.0041;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134575798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.474;LDAF=0.0574;AVGPOST=0.9271;RSQ=0.4537;ERATE=0.0114;THETA=0.0045;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134575827 . A AGGGAGG 794 PASS INDEL;BAVGPOST=0.787;BRSQ=0.337;LDAF=0.2476;AVGPOST=0.7171;RSQ=0.3978;ERATE=0.0452;THETA=0.0019;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 134575843 . GGAGAGGGA G 244 PASS INDEL;BAVGPOST=0.985;BRSQ=0.402;LDAF=0.0333;AVGPOST=0.9628;RSQ=0.5813;ERATE=0.0030;THETA=0.0030;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 134575848 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0117;AVGPOST=0.9993;RSQ=0.9765;ERATE=0.0003;THETA=0.0022;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134576018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8106;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134576125 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.892;LDAF=0.0438;AVGPOST=0.9932;RSQ=0.9406;ERATE=0.0006;THETA=0.0017;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 134576186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0600;AVGPOST=0.9986;RSQ=0.9907;ERATE=0.0003;THETA=0.0006;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 134576189 . TTC T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4226;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134576192 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5367;ERATE=0.0005;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134576350 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.4615;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134576389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5110;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134576404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.865;LDAF=0.0409;AVGPOST=0.9943;RSQ=0.9468;ERATE=0.0007;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134576450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0063;AVGPOST=0.9908;RSQ=0.4398;ERATE=0.0008;THETA=0.0026;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134576489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.616;LDAF=0.0372;AVGPOST=0.9785;RSQ=0.7744;ERATE=0.0010;THETA=0.0042;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134576490 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0038;AVGPOST=0.9960;RSQ=0.5533;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134576518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0020;AVGPOST=0.9971;RSQ=0.3964;ERATE=0.0006;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134576524 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9981;RSQ=0.9503;ERATE=0.0003;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134576527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.540;LDAF=0.0070;AVGPOST=0.9959;RSQ=0.7670;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134576587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.1948;AVGPOST=0.9950;RSQ=0.9877;ERATE=0.0005;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 134576593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8249;AVGPOST=0.9969;RSQ=0.9921;ERATE=0.0006;THETA=0.0003;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 134576723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6505;ERATE=0.0002;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134576731 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0002;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134576746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8615;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134576881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8269;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0002;THETA=0.0003;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 134576984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7606;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134576991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134577019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6231;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134577057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0105;AVGPOST=0.9990;RSQ=0.9640;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134577305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6399;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134577336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8562;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134577448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.703;LDAF=0.0050;AVGPOST=0.9978;RSQ=0.8052;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134577508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8235;AVGPOST=0.9913;RSQ=0.9768;ERATE=0.0012;THETA=0.0003;AC=1801;AN=2184 GT:DS:GL:BD 0.82463372 1 1 134577523 . AT A 386 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8821;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134577664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8437;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134577695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134577756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9497;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134577832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9635;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134577906 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1392;AVGPOST=0.9963;RSQ=0.9877;ERATE=0.0005;THETA=0.0006;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 134578222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9985;RSQ=0.9534;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134578333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5250;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134578344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3009;AVGPOST=0.9926;RSQ=0.9872;ERATE=0.0006;THETA=0.0005;AC=655;AN=2184 GT:DS:GL:BD 0.29990843 0 1 134578435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.524;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6102;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134578436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0871;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134578473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.907;LDAF=0.0090;AVGPOST=0.9982;RSQ=0.9258;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134578506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134578533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0142;AVGPOST=0.9989;RSQ=0.9718;ERATE=0.0002;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134578590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1961;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 134578802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2993;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 134578889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134578945 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134578985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134579071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1116;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 134579090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1116;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 134579232 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4530;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134579239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134579353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4431;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134579562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134579813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0719;AVGPOST=0.9960;RSQ=0.9775;ERATE=0.0002;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 134580011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.5190;AVGPOST=0.9923;RSQ=0.9883;ERATE=0.0009;THETA=0.0003;AC=1136;AN=2184 GT:DS:GL:BD 0.52014655 1 1 134580067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3800;AVGPOST=0.9929;RSQ=0.9891;ERATE=0.0008;THETA=0.0002;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 134580132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134580372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134580394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9222;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134580574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1965;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0005;THETA=0.0008;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 134580606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3822;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 134580670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134580904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134580912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.930;LDAF=0.1287;AVGPOST=0.9767;RSQ=0.9204;ERATE=0.0011;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134580946 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7017;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134581044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134581128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0556;AVGPOST=0.9993;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 134581271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0263;AVGPOST=0.9995;RSQ=0.9918;ERATE=0.0003;THETA=0.0008;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 134581295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134581342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0262;AVGPOST=0.9987;RSQ=0.9826;ERATE=0.0003;THETA=0.0011;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 134581397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.560;LDAF=0.0055;AVGPOST=0.9935;RSQ=0.5315;ERATE=0.0034;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134581398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7042;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134581489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0318;AVGPOST=0.9984;RSQ=0.9797;ERATE=0.0004;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134581653 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134581676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0823;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 134581749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0273;AVGPOST=0.9994;RSQ=0.9897;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134581754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134581827 rs35723485 AC A 14554 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0824;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 134581899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0164;AVGPOST=0.9984;RSQ=0.9621;ERATE=0.0004;THETA=0.0028;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134582013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134582042 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134582088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9830;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134582154 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134582380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9813;ERATE=0.0003;THETA=0.0042;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134582483 . TA T 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5547;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134582488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134582608 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134582656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6939;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134582768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9189;ERATE=0.0003;THETA=0.0056;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134582775 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134582919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0117;AVGPOST=0.9988;RSQ=0.9562;ERATE=0.0003;THETA=0.0015;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134582927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.0886;AVGPOST=0.9947;RSQ=0.9785;ERATE=0.0003;THETA=0.0117;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134582950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6330;ERATE=0.0003;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134582969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134583012 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134583037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.514;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6039;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134583137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0052;AVGPOST=0.9978;RSQ=0.8291;ERATE=0.0007;THETA=0.0019;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134583200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134583499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0128;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134583667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7139;ERATE=0.0004;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134583706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0420;AVGPOST=0.9952;RSQ=0.9588;ERATE=0.0003;THETA=0.0059;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134583803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.970;LDAF=0.6458;AVGPOST=0.9767;RSQ=0.9634;ERATE=0.0079;THETA=0.0117;AC=1409;AN=2184 GT:DS:GL:BD 0.64514655 1 1 134583901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584072 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8180;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134584107 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0067;AVGPOST=0.9987;RSQ=0.9230;ERATE=0.0003;THETA=0.0056;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134584207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5466;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0061;AVGPOST=0.9960;RSQ=0.7675;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134584315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8644;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134584428 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9679;ERATE=0.0005;THETA=0.0074;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134584482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0814;AVGPOST=0.9952;RSQ=0.9761;ERATE=0.0005;THETA=0.0020;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 134584493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0151;AVGPOST=0.9987;RSQ=0.9642;ERATE=0.0003;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134584535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134584635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584668 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0319;AVGPOST=0.9980;RSQ=0.9785;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 134584716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134584781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0106;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134584826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.969;LDAF=0.0198;AVGPOST=0.9989;RSQ=0.9759;ERATE=0.0003;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134584950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134584953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134584962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585125 rs60885496 G GT 528 PASS INDEL;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0080;AVGPOST=0.9968;RSQ=0.8529;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134585143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8402;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134585249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8949;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134585272 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.8821;AVGPOST=0.9980;RSQ=0.9932;ERATE=0.0004;THETA=0.0025;AC=1927;AN=2184 GT:DS:GL:BD 0.88232601 1 1 134585354 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134585404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9452;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134585460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0275;AVGPOST=0.9995;RSQ=0.9925;ERATE=0.0003;THETA=0.0024;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134585514 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6161;AVGPOST=0.9947;RSQ=0.9931;ERATE=0.0004;THETA=0.0008;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 134585544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8332;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134585548 . TG T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134585616 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585617 . A AC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5960;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134585619 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0231;AVGPOST=0.9994;RSQ=0.9879;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 134585671 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134585681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.4801;AVGPOST=0.9859;RSQ=0.9814;ERATE=0.0006;THETA=0.0006;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 134585797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9339;AVGPOST=0.9991;RSQ=0.9937;ERATE=0.0003;THETA=0.0015;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 134585803 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5617;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134585836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134585868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0212;AVGPOST=0.9991;RSQ=0.9823;ERATE=0.0004;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134585893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8257;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134586331 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9068;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134586411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0743;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 134586461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0110;AVGPOST=0.9979;RSQ=0.9276;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134586894 . GGT G 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0047;AVGPOST=0.9941;RSQ=0.5487;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134587003 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8193;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134587061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9559;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134587065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134587222 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134587289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134587367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0580;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134587390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.965;LDAF=0.0571;AVGPOST=0.9991;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 134587441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134587468 rs75196125 TAAC T 8017 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0640;AVGPOST=0.9978;RSQ=0.9846;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 134587488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.791;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8906;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134587586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8058;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134587879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8267;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134587962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6507;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134587992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8348;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134588027 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8902;ERATE=0.0004;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134588095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.4526;AVGPOST=0.9757;RSQ=0.9629;ERATE=0.0047;THETA=0.0002;AC=992;AN=2184 GT:DS:GL:BD 0.45421246 0 1 134588207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6213;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134588276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7591;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134588373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8708;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134588454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.4529;AVGPOST=0.9904;RSQ=0.9841;ERATE=0.0019;THETA=0.0004;AC=988;AN=2184 GT:DS:GL:BD 0.45238096 0 1 134588474 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134588650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134588731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4197;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 134588850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134588854 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134588895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134588906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0781;AVGPOST=0.9965;RSQ=0.9847;ERATE=0.0003;THETA=0.0003;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 134588910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5472;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134589228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.5589;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134589236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0670;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0003;THETA=0.0006;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 134589242 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134589346 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134589349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5834;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0005;THETA=0.0002;AC=1274;AN=2184 GT:DS:GL:BD 0.58333331 1 1 134589415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0581;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134589433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9219;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134589647 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9158;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134589723 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.2423;AVGPOST=0.9958;RSQ=0.9902;ERATE=0.0008;THETA=0.0010;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 134589832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0130;AVGPOST=0.9989;RSQ=0.9649;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134589850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.930;LDAF=0.1837;AVGPOST=0.9774;RSQ=0.9484;ERATE=0.0007;THETA=0.0003;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 134589894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.601;LDAF=0.0043;AVGPOST=0.9968;RSQ=0.7300;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134589904 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4802;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134589965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0160;AVGPOST=0.9982;RSQ=0.9576;ERATE=0.0003;THETA=0.0001;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134589976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0194;AVGPOST=0.9944;RSQ=0.8768;ERATE=0.0008;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134590209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0092;AVGPOST=0.9976;RSQ=0.9047;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134590272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0581;AVGPOST=0.9987;RSQ=0.9905;ERATE=0.0004;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 134590327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0048;AVGPOST=0.9977;RSQ=0.7976;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134590342 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.949;LDAF=0.2366;AVGPOST=0.9908;RSQ=0.9816;ERATE=0.0008;THETA=0.0004;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 134590398 . A AG 2566 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0590;AVGPOST=0.9966;RSQ=0.9778;ERATE=0.0008;THETA=0.0008;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 134590423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134590476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8190;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134590503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9722;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134590732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134590840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5843;AVGPOST=0.9957;RSQ=0.9930;ERATE=0.0012;THETA=0.0003;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 134590883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134590887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134590935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134590949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0201;AVGPOST=0.9990;RSQ=0.9772;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 134591000 rs72382259 GTTGTTT G 40092 PASS INDEL;BAVGPOST=0.982;BRSQ=0.964;LDAF=0.4396;AVGPOST=0.9685;RSQ=0.9522;ERATE=0.0082;THETA=0.0010;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 134591098 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6429;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134591186 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0577;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 134591223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9125;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134591278 . ATAAAT A 112 PASS INDEL;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0034;AVGPOST=0.9958;RSQ=0.5286;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134591388 . A AT 2704 PASS INDEL;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0376;AVGPOST=0.9978;RSQ=0.9762;ERATE=0.0005;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134591390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0211;AVGPOST=0.9976;RSQ=0.9590;ERATE=0.0005;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134591443 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3745;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134591474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5391;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134591500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6118;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134591657 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134591692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134591728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.926;LDAF=0.0785;AVGPOST=0.9851;RSQ=0.9206;ERATE=0.0003;THETA=0.0009;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 134592109 . AT A 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592176 . AAAGT A 140 PASS INDEL;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5989;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134592225 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4236;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0204;AVGPOST=0.9994;RSQ=0.9881;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134592862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4719;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592881 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9582;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134592910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9991;RSQ=0.9633;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134592947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9994;RSQ=0.9810;ERATE=0.0004;THETA=0.0015;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134592971 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134592979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134593040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0204;AVGPOST=0.9994;RSQ=0.9870;ERATE=0.0003;THETA=0.0012;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134593123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6271;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134593256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134593288 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0139;AVGPOST=0.9988;RSQ=0.9745;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134593475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7450;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134593491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.858;LDAF=0.0163;AVGPOST=0.9956;RSQ=0.9021;ERATE=0.0004;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134593499 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.954;LDAF=0.3583;AVGPOST=0.9573;RSQ=0.9331;ERATE=0.0161;THETA=0.0009;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 134593528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0185;AVGPOST=0.9974;RSQ=0.9574;ERATE=0.0003;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134593582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7800;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134593717 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0148;AVGPOST=0.9993;RSQ=0.9774;ERATE=0.0004;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134593787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.6580;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134593892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9854;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134594051 . TCA T 567 PASS INDEL;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8296;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134594150 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9795;ERATE=0.0004;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134594203 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7305;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134594307 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0148;AVGPOST=0.9979;RSQ=0.9529;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134594325 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8853;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134594392 . AT A 2054 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0142;AVGPOST=0.9984;RSQ=0.9607;ERATE=0.0003;THETA=0.0011;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134594646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9327;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134594764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4958;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134594776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.712;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.7242;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134594810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9831;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134594819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3696;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134594831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7169;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134594879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0201;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134594912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4570;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134594918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.7992;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134594987 . T TA 350 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0052;AVGPOST=0.9960;RSQ=0.6689;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134595050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0095;AVGPOST=0.9984;RSQ=0.9297;ERATE=0.0005;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134595089 . G GA 185 PASS INDEL;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0040;AVGPOST=0.9951;RSQ=0.5394;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134595143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0883;AVGPOST=0.9893;RSQ=0.9463;ERATE=0.0010;THETA=0.0006;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134595357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9718;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134595364 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134595395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134595494 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0145;AVGPOST=0.9991;RSQ=0.9795;ERATE=0.0003;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 134595601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0203;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134595691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9516;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134595720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0205;AVGPOST=0.9992;RSQ=0.9845;ERATE=0.0004;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134595737 . TATA T 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8276;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134595766 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134595844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0139;AVGPOST=0.9991;RSQ=0.9732;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134595868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9701;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134595889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0180;AVGPOST=0.9994;RSQ=0.9836;ERATE=0.0004;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134596043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7167;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134596085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134596105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0379;AVGPOST=0.9997;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134596106 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9991;RSQ=0.9588;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134596149 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0368;AVGPOST=0.9985;RSQ=0.9826;ERATE=0.0005;THETA=0.0011;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 134596156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0040;AVGPOST=0.9976;RSQ=0.7812;ERATE=0.0007;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134596206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7746;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134596252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8441;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134596354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7042;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134596375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8230;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134596389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4958;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134596404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9212;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134596422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0106;AVGPOST=0.9984;RSQ=0.9397;ERATE=0.0004;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134596565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0966;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134596566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.3721;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 134596580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5586;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134596712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134596734 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1578;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 134596738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134596869 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7218;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134596871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134597118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134597240 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134597363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134597373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0951;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 134597381 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134597430 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134597485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134597486 . GC G 606 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9517;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134597591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134597797 . GA G 260 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8727;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134597935 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7059;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134597946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7202;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134598038 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0965;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0004;THETA=0.0008;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134598092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9793;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134598143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134598256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6388;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134598300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5120;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134598322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7531;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134598356 . TG T 75 PASS INDEL;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0057;AVGPOST=0.9923;RSQ=0.4601;ERATE=0.0015;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134598401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.969;LDAF=0.7625;AVGPOST=0.9872;RSQ=0.9744;ERATE=0.0012;THETA=0.0009;AC=1675;AN=2184 GT:DS:GL:BD 0.76694137 1 1 134598409 . AG A 4967 PASS INDEL;BAVGPOST=0.982;BRSQ=0.903;LDAF=0.0984;AVGPOST=0.9943;RSQ=0.9737;ERATE=0.0008;THETA=0.0017;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 134598504 . GGAA G 13616 PASS INDEL;BAVGPOST=0.765;BRSQ=0.503;LDAF=0.4432;AVGPOST=0.7504;RSQ=0.5106;ERATE=0.0997;THETA=0.0004;AC=908;AN=2184 GT:DS:GL:BD 0.41575092 0 1 134598517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.668;LDAF=0.1029;AVGPOST=0.9101;RSQ=0.5959;ERATE=0.0291;THETA=0.0003;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 134598594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.919;BRSQ=0.674;LDAF=0.2066;AVGPOST=0.8503;RSQ=0.5783;ERATE=0.0645;THETA=0.0005;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 134598599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.580;LDAF=0.1316;AVGPOST=0.8871;RSQ=0.5836;ERATE=0.0276;THETA=0.0005;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 134598609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.880;LDAF=0.1326;AVGPOST=0.9744;RSQ=0.9176;ERATE=0.0016;THETA=0.0014;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 134598646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.500;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3199;ERATE=0.0007;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134598655 . AAG A 76 PASS INDEL;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8090;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134598898 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0100;AVGPOST=0.9990;RSQ=0.9550;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134599059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7714;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=1686;AN=2184 GT:DS:GL:BD 0.77197802 1 1 134599090 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.9023;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134599277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134599293 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8746;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134599303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1582;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 134599331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134599382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134599410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9875;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 134599434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134599475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5049;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0007;THETA=0.0008;AC=1105;AN=2184 GT:DS:GL:BD 0.50595236 1 1 134599566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134599612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9988;RSQ=0.9626;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134599711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6101;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134599739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.5972;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134599786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0417;AVGPOST=0.9931;RSQ=0.9454;ERATE=0.0003;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134599822 . A AT 256 PASS INDEL;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9117;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134599884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8130;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134600086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0080;AVGPOST=0.9991;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134600270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134600400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134600515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9988;RSQ=0.9506;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134600668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.818;LDAF=0.0123;AVGPOST=0.9927;RSQ=0.7530;ERATE=0.0009;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134600673 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.7709;AVGPOST=0.9916;RSQ=0.9820;ERATE=0.0013;THETA=0.0005;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 134600677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7463;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134600682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0171;AVGPOST=0.9984;RSQ=0.9617;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134600714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134600745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134600831 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5717;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134600850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134600887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5862;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134600983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7790;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134601068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2659;AVGPOST=0.9952;RSQ=0.9925;ERATE=0.0003;THETA=0.0003;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 134601312 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4352;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134601347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0302;AVGPOST=0.9989;RSQ=0.9845;ERATE=0.0003;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 134601403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0051;AVGPOST=0.9966;RSQ=0.7284;ERATE=0.0014;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134601405 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134601406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8934;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134601511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2173;AVGPOST=0.9950;RSQ=0.9885;ERATE=0.0010;THETA=0.0006;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 134601550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8063;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134601588 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.952;LDAF=0.1468;AVGPOST=0.9839;RSQ=0.9614;ERATE=0.0005;THETA=0.0003;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134601665 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6492;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134601713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6538;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134601935 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7270;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134601966 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8677;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134602016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0554;AVGPOST=0.9987;RSQ=0.9916;ERATE=0.0004;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 134602070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0068;AVGPOST=0.9983;RSQ=0.8961;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134602084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7744;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134602113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1176;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 134602147 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0062;AVGPOST=0.9976;RSQ=0.8275;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134602333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9156;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134602545 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134602592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134602594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134602765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4747;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134602959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6373;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134603019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134603069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134603326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0341;AVGPOST=0.9991;RSQ=0.9900;ERATE=0.0003;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 134603338 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1555;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0011;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 134603425 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5437;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134603715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6125;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134603767 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4784;AVGPOST=0.9973;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=1045;AN=2184 GT:DS:GL:BD 0.47847986 0 1 134603877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9357;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134603917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9074;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134604107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0039;AVGPOST=0.9974;RSQ=0.7540;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134604442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5211;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134604459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134604472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5099;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134604513 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.416;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6200;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134604524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.6648;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134604629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134604664 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134604678 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9994;RSQ=0.9699;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134604679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.677;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9208;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134604721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9393;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134604726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5807;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134604810 . A AT 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.4625;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134604862 . CAAAAA C 1151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9983;RSQ=0.8874;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134604987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9984;RSQ=0.9076;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134605041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.4909;AVGPOST=0.9953;RSQ=0.9936;ERATE=0.0007;THETA=0.0006;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 134605067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134605127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.926;LDAF=0.0234;AVGPOST=0.9915;RSQ=0.8539;ERATE=0.0004;THETA=0.0002;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134605152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0044;AVGPOST=0.9958;RSQ=0.6197;ERATE=0.0008;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134605250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9669;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134605362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.1170;AVGPOST=0.9968;RSQ=0.9895;ERATE=0.0004;THETA=0.0002;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 134605426 . GA G 403 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9344;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134605468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0056;AVGPOST=0.9980;RSQ=0.8790;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134605491 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4290;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134605532 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9992;RSQ=0.9629;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134605718 . G GT 540 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0095;AVGPOST=0.9954;RSQ=0.7957;ERATE=0.0009;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134605739 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9990;RSQ=0.9574;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134605776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0105;AVGPOST=0.9982;RSQ=0.9363;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134605990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134606001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134606089 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134606197 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8949;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134606223 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4347;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134606231 . ATTT A 5680 PASS INDEL;BAVGPOST=0.959;BRSQ=0.848;LDAF=0.1418;AVGPOST=0.9810;RSQ=0.9430;ERATE=0.0014;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 134606267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134606356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134606388 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.595;LDAF=0.0054;AVGPOST=0.9957;RSQ=0.7185;ERATE=0.0004;THETA=0.0065;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134606413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.687;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6197;ERATE=0.0004;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134606462 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0282;AVGPOST=0.9992;RSQ=0.9877;ERATE=0.0003;THETA=0.0072;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134606466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.990;LDAF=0.4574;AVGPOST=0.9820;RSQ=0.9759;ERATE=0.0009;THETA=0.0007;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 134606489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6368;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134606530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0156;AVGPOST=0.9974;RSQ=0.9386;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134606652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7842;ERATE=0.0005;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134606656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134606689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9853;ERATE=0.0003;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134606779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1635;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 134606878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134607160 . GT G 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6374;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134607276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134607334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1630;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 134607371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6542;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134607448 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8648;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134607572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0283;AVGPOST=0.9991;RSQ=0.9886;ERATE=0.0003;THETA=0.0017;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134607614 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0279;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134607675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0019;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134607730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0713;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0003;THETA=0.0009;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 134607753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9326;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134607821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1633;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 134607834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0084;AVGPOST=0.9963;RSQ=0.8556;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134607863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134607910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.9960;AVGPOST=0.9992;RSQ=0.9214;ERATE=0.0003;THETA=0.0013;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 134607959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134608199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9996;RSQ=0.9712;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134608230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0282;AVGPOST=0.9994;RSQ=0.9894;ERATE=0.0004;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134608258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134608325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9224;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134608447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8972;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134608461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1181;AVGPOST=0.9960;RSQ=0.9852;ERATE=0.0005;THETA=0.0005;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 134608469 . GA G 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6801;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134608475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134608664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134608754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134608759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134608796 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134608847 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0132;AVGPOST=0.9993;RSQ=0.9758;ERATE=0.0003;THETA=0.0001;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134608910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134608958 rs75528572 CT C 15185 PASS INDEL;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1643;AVGPOST=0.9975;RSQ=0.9933;ERATE=0.0005;THETA=0.0003;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 134608965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134609045 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0281;AVGPOST=0.9995;RSQ=0.9907;ERATE=0.0003;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134609190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5090;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134609288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134609506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134609537 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0279;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134609570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0010;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 134609718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0091;AVGPOST=0.9993;RSQ=0.9723;ERATE=0.0005;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134609797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0713;AVGPOST=0.9989;RSQ=0.9941;ERATE=0.0003;THETA=0.0008;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 134609862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134609901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8860;ERATE=0.0007;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134609902 rs67628670 CT C 21166 PASS INDEL;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.1629;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 134609993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134610128 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.871;LDAF=0.0211;AVGPOST=0.9970;RSQ=0.9434;ERATE=0.0003;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134610137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0284;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134610277 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0132;AVGPOST=0.9990;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134610281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1918;AVGPOST=0.9989;RSQ=0.9970;ERATE=0.0004;THETA=0.0008;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 134610293 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9422;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134610319 . G GA 24489 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1922;AVGPOST=0.9973;RSQ=0.9930;ERATE=0.0005;THETA=0.0005;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 134610358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1913;AVGPOST=0.9976;RSQ=0.9939;ERATE=0.0006;THETA=0.0007;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 134610372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134610408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7610;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134610457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134610609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134610637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134610699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134610794 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8265;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134610805 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134610839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0296;AVGPOST=0.9991;RSQ=0.9865;ERATE=0.0004;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134610926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0284;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134611072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134611096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0284;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134611097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0271;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 134611125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.7597;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134611156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0285;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0020;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 134611182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9356;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134611185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7725;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134611268 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134611357 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6491;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134611358 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134611551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134611590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8667;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134611602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6836;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 134611635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0059;AVGPOST=0.9989;RSQ=0.9213;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134611642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.8070;AVGPOST=0.9978;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=1761;AN=2184 GT:DS:GL:BD 0.80631870 1 1 134611676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134611690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6827;AVGPOST=0.9967;RSQ=0.9943;ERATE=0.0006;THETA=0.0006;AC=1493;AN=2184 GT:DS:GL:BD 0.68360806 1 1 134611736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7470;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134611753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6841;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0006;THETA=0.0004;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 134611835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8068;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134611836 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.604;LDAF=0.0312;AVGPOST=0.9880;RSQ=0.8494;ERATE=0.0012;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134612178 . G GC 12 PASS INDEL;BAVGPOST=0.964;BRSQ=0.149;LDAF=0.0144;AVGPOST=0.9823;RSQ=0.5013;ERATE=0.0014;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134612196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5548;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134612255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6836;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 134612286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134612433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134612519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134612521 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6837;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 134612561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0224;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134612606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6834;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0005;THETA=0.0007;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 134612627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.6829;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0004;THETA=0.0007;AC=1493;AN=2184 GT:DS:GL:BD 0.68360806 1 1 134612778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.908;LDAF=0.0351;AVGPOST=0.9938;RSQ=0.9306;ERATE=0.0006;THETA=0.0006;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 134612849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134612941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134612974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134613061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8976;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134613097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134613153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0362;AVGPOST=0.9996;RSQ=0.9946;ERATE=0.0003;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134613154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5289;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134613179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0082;AVGPOST=0.9958;RSQ=0.8081;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134613205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5291;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134613237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134613304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5282;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0006;THETA=0.0005;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 134613365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9374;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134613388 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8476;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134613392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7446;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134613424 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5293;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134613466 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.966;LDAF=0.4984;AVGPOST=0.9821;RSQ=0.9788;ERATE=0.0003;THETA=0.0004;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 134613574 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.966;LDAF=0.4987;AVGPOST=0.9814;RSQ=0.9780;ERATE=0.0005;THETA=0.0004;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 134613575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0320;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 134613589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.741;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8378;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134613632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134613715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1214;AVGPOST=0.9979;RSQ=0.9940;ERATE=0.0003;THETA=0.0015;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 134613753 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5294;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0004;THETA=0.0006;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134613762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134613789 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0887;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134613814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.867;LDAF=0.0242;AVGPOST=0.9951;RSQ=0.9138;ERATE=0.0005;THETA=0.0023;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 134613993 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0075;AVGPOST=0.9990;RSQ=0.9434;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134614053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134614070 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134614153 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5302;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 134614250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6263;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134614302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1218;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 134614354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0119;AVGPOST=0.9991;RSQ=0.9756;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134614375 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0093;AVGPOST=0.9993;RSQ=0.9698;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134614464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5701;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134614467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.2206;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134614527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1209;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 134614569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3961;AVGPOST=0.9939;RSQ=0.9915;ERATE=0.0006;THETA=0.0003;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 134614581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1191;AVGPOST=0.9975;RSQ=0.9918;ERATE=0.0004;THETA=0.0003;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 134614593 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9220;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134614641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6508;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 134614707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5423;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134614860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5291;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0004;THETA=0.0006;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134614906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5289;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134614912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1139;AVGPOST=0.9988;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 134614956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6502;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0006;THETA=0.0003;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 134615023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4289;ERATE=0.0009;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134615031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.973;LDAF=0.5467;AVGPOST=0.9887;RSQ=0.9843;ERATE=0.0011;THETA=0.0003;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 134615116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134615232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6242;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134615243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0888;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134615289 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6772;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134615380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0888;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 134615417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134615477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8860;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134615481 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0329;AVGPOST=0.9997;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 134615566 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5293;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0005;THETA=0.0004;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 134615578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5266;AVGPOST=0.9964;RSQ=0.9948;ERATE=0.0005;THETA=0.0006;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 134615630 rs5781141 G GA 32616 PASS INDEL;BAVGPOST=0.970;BRSQ=0.951;LDAF=0.5118;AVGPOST=0.9197;RSQ=0.8856;ERATE=0.0189;THETA=0.0003;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 134615642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134615748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5853;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134615764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134615789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5324;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0005;THETA=0.0013;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 134616001 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134616014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134616114 . G GT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134616193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134616199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5295;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 134616206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6680;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134616210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134616229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134616389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5297;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0006;THETA=0.0005;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 134616416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.6510;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=1422;AN=2184 GT:DS:GL:BD 0.65109891 1 1 134616433 . AC A 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7772;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134616459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5400;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134616589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0002;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134616712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9100;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134616731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0007;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134616787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134616817 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.931;LDAF=0.4482;AVGPOST=0.9598;RSQ=0.9536;ERATE=0.0247;THETA=0.0003;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 134616838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2505;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0002;THETA=0.0003;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 134616868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134616946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134616982 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134616985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134617019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134617380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8218;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0007;THETA=0.0002;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 134617477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0186;AVGPOST=0.9991;RSQ=0.9797;ERATE=0.0004;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 134617514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4706;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134617612 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6932;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134617707 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0544;AVGPOST=0.9976;RSQ=0.9821;ERATE=0.0003;THETA=0.0002;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 134617791 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0066;AVGPOST=0.9977;RSQ=0.8553;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134617857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134617928 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134617936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8900;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134618329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1833;AVGPOST=0.9973;RSQ=0.9927;ERATE=0.0004;THETA=0.0002;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 134618354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134618444 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7513;ERATE=0.0013;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134618468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134618494 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8247;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0003;THETA=0.0002;AC=1800;AN=2184 GT:DS:GL:BD 0.82417583 1 1 134618507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2498;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 134618564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0955;AVGPOST=0.9986;RSQ=0.9936;ERATE=0.0002;THETA=0.0005;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 134618582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134618595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8896;ERATE=0.0005;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134618647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4380;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0007;THETA=0.0003;AC=957;AN=2184 GT:DS:GL:BD 0.43818682 0 1 134618668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134618708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5198;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134618784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3121;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0006;THETA=0.0003;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 134618812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5650;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134619023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.953;LDAF=0.2949;AVGPOST=0.9878;RSQ=0.9791;ERATE=0.0005;THETA=0.0004;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 134619063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.953;LDAF=0.2957;AVGPOST=0.9876;RSQ=0.9791;ERATE=0.0004;THETA=0.0002;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 134619064 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.974;LDAF=0.3057;AVGPOST=0.9933;RSQ=0.9881;ERATE=0.0007;THETA=0.0002;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 134619067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5387;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134619124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134619253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134619259 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0078;AVGPOST=0.9983;RSQ=0.9147;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134619368 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0169;AVGPOST=0.9991;RSQ=0.9785;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 134619413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1601;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0002;THETA=0.0002;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 134619486 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5451;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134619538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3126;AVGPOST=0.9967;RSQ=0.9933;ERATE=0.0011;THETA=0.0003;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 134619588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1604;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 134619652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6498;ERATE=0.0002;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134619666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3112;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0007;THETA=0.0002;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134619704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0002;THETA=0.0001;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 134619734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5846;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134619756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3109;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134619856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134619861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2427;AVGPOST=0.9966;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 134620022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9717;ERATE=0.0002;THETA=0.0001;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134620090 . G GA 826 PASS INDEL;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.9025;ERATE=0.0004;THETA=0.0001;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134620172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134620182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0299;AVGPOST=0.9978;RSQ=0.9780;ERATE=0.0002;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 134620183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134620217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5697;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134620222 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4715;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0005;THETA=0.0004;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 134620408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134620411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0022;AVGPOST=0.9997;RSQ=0.9415;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134620510 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134620524 . G GGA 53 PASS INDEL;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0040;AVGPOST=0.9956;RSQ=0.6004;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134620538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7248;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134620558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9454;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134620570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134620580 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134620607 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3107;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0004;THETA=0.0001;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134620677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3106;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0002;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 134620795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.715;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.7876;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134620881 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3098;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 134620883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0072;AVGPOST=0.9964;RSQ=0.7947;ERATE=0.0005;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134620894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7941;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134621000 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134621038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6267;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134621056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0865;AVGPOST=0.9975;RSQ=0.9865;ERATE=0.0004;THETA=0.0003;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 134621155 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9737;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134621174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0053;AVGPOST=0.9943;RSQ=0.5903;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134621219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.381;LDAF=0.0074;AVGPOST=0.9898;RSQ=0.4926;ERATE=0.0010;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134621227 . C CAG 521 PASS INDEL;BAVGPOST=0.974;BRSQ=0.460;LDAF=0.0402;AVGPOST=0.9577;RSQ=0.5910;ERATE=0.0059;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 134621244 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1603;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 134621299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3103;AVGPOST=0.9978;RSQ=0.9955;ERATE=0.0006;THETA=0.0003;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 134621306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5212;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134621388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7741;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134621482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5107;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134621483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3160;AVGPOST=0.9966;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 134621493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0106;AVGPOST=0.9985;RSQ=0.9434;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 134621538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 134621578 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9532;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134621666 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134621780 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2610;AVGPOST=0.9981;RSQ=0.9962;ERATE=0.0004;THETA=0.0029;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 134621803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6589;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134621817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5523;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134621820 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0172;AVGPOST=0.9988;RSQ=0.9702;ERATE=0.0004;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 134622095 . T TA 421 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0061;AVGPOST=0.9982;RSQ=0.8917;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134622104 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134622156 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134622493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134622507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2602;AVGPOST=0.9973;RSQ=0.9953;ERATE=0.0005;THETA=0.0003;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 134622639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.724;LDAF=0.9351;AVGPOST=0.9481;RSQ=0.6710;ERATE=0.0196;THETA=0.0002;AC=2078;AN=2184 GT:DS:GL:BD 0.95146519 1 1 134622669 . G GA 1986 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0216;AVGPOST=0.9972;RSQ=0.9501;ERATE=0.0003;THETA=0.0006;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134622728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7739;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134622741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9220;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134622800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.959;LDAF=0.0319;AVGPOST=0.9978;RSQ=0.9731;ERATE=0.0004;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134622804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134622931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134622972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134623015 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5312;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134623082 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134623540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134623650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134623757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0204;AVGPOST=0.9992;RSQ=0.9836;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 134623816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134623869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134623984 . AT A 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134624045 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134624083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9616;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134624443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8699;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134624571 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0056;AVGPOST=0.9994;RSQ=0.9543;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134624775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.2953;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134624847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134624855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.2223;AVGPOST=0.9895;RSQ=0.9792;ERATE=0.0028;THETA=0.0007;AC=487;AN=2184 GT:DS:GL:BD 0.22298534 0 1 134624990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2258;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 134625022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4409;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134625023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7246;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134625064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0522;AVGPOST=0.9987;RSQ=0.9877;ERATE=0.0003;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 134625095 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8348;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134625220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5021;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=1099;AN=2184 GT:DS:GL:BD 0.50320512 1 1 134625233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134625318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7857;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134625360 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134625411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7249;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134625476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7804;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134625486 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.7340;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134625613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9713;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134625631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134625640 . TTATAATG T 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134625641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.2038;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 134625790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8851;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134625824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7560;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134625836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7592;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134625909 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7343;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134625917 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7642;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134626046 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6706;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134626070 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2256;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0004;THETA=0.0009;AC=491;AN=2184 GT:DS:GL:BD 0.22481684 0 1 134626177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4009;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134626183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134626188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4924;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134626252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9990;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 134626255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8367;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134626256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8550;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134626260 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134626372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2632;AVGPOST=0.9983;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 134626487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134626542 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5209;AVGPOST=0.9965;RSQ=0.9943;ERATE=0.0005;THETA=0.0002;AC=1138;AN=2184 GT:DS:GL:BD 0.52106225 1 1 134626577 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.890;LDAF=0.0167;AVGPOST=0.9931;RSQ=0.8399;ERATE=0.0014;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134626677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0065;AVGPOST=0.9973;RSQ=0.8655;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134626685 . GTC G 1968 PASS INDEL;BAVGPOST=0.775;BRSQ=0.467;LDAF=0.2956;AVGPOST=0.7450;RSQ=0.5001;ERATE=0.0422;THETA=0.0002;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 134626733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.892;BRSQ=0.685;LDAF=0.2194;AVGPOST=0.8774;RSQ=0.7390;ERATE=0.0189;THETA=0.0007;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 134626747 rs58978148 TGA T 2459 PASS INDEL;BAVGPOST=0.735;BRSQ=0.280;LDAF=0.3251;AVGPOST=0.6576;RSQ=0.3230;ERATE=0.0585;THETA=0.0002;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 134626793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.413;LDAF=0.3731;AVGPOST=0.6847;RSQ=0.4065;ERATE=0.0575;THETA=0.0005;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 134626823 . ATC A 413 PASS INDEL;BAVGPOST=0.949;BRSQ=0.230;LDAF=0.0997;AVGPOST=0.8657;RSQ=0.4042;ERATE=0.0088;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 134626831 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.231;LDAF=0.0540;AVGPOST=0.9456;RSQ=0.6083;ERATE=0.0018;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 134626833 . G GAT 128 PASS INDEL;BAVGPOST=0.969;BRSQ=0.151;LDAF=0.0719;AVGPOST=0.9163;RSQ=0.5476;ERATE=0.0018;THETA=0.0040;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 134626848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.850;BRSQ=0.696;LDAF=0.4995;AVGPOST=0.8591;RSQ=0.7700;ERATE=0.0150;THETA=0.0002;AC=1099;AN=2184 GT:DS:GL:BD 0.50320512 1 1 134626849 rs71731007 T TA 329 PASS INDEL;BAVGPOST=0.914;BRSQ=0.187;LDAF=0.1721;AVGPOST=0.7582;RSQ=0.2900;ERATE=0.0232;THETA=0.0006;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 134626856 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.732;LDAF=0.3406;AVGPOST=0.8650;RSQ=0.7757;ERATE=0.0074;THETA=0.0003;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 134626892 rs36159589 T TTA 2758 PASS INDEL;BAVGPOST=0.845;BRSQ=0.595;LDAF=0.3041;AVGPOST=0.8716;RSQ=0.7598;ERATE=0.0086;THETA=0.0003;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 134626945 rs36137555 TAA T 1513 PASS INDEL;BAVGPOST=0.797;BRSQ=0.489;LDAF=0.3585;AVGPOST=0.7451;RSQ=0.5317;ERATE=0.0225;THETA=0.0003;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 134626968 . TTA T 136 PASS INDEL;BAVGPOST=0.887;BRSQ=0.071;LDAF=0.1237;AVGPOST=0.8218;RSQ=0.3630;ERATE=0.0073;THETA=0.0008;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 134626974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.135;LDAF=0.1135;AVGPOST=0.8963;RSQ=0.5961;ERATE=0.0037;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 134626991 rs61201340 T TA 90 PASS INDEL;BAVGPOST=0.867;BRSQ=0.055;LDAF=0.1853;AVGPOST=0.7607;RSQ=0.3701;ERATE=0.0091;THETA=0.0007;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 134627006 . A AT 843 PASS INDEL;BAVGPOST=0.553;BRSQ=0.153;LDAF=0.4148;AVGPOST=0.7870;RSQ=0.6508;ERATE=0.0104;THETA=0.0003;AC=910;AN=2184 GT:DS:GL:BD 0.41666666 0 1 134627030 rs59171294 A AT 294 PASS INDEL;BAVGPOST=0.671;BRSQ=0.053;LDAF=0.2474;AVGPOST=0.8251;RSQ=0.6320;ERATE=0.0078;THETA=0.0014;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 134627036 . TTA T 592 PASS INDEL;BAVGPOST=0.685;BRSQ=0.102;LDAF=0.2503;AVGPOST=0.8899;RSQ=0.7822;ERATE=0.0038;THETA=0.0003;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 134627039 rs60791700 TA T 399 PASS INDEL;BAVGPOST=0.687;BRSQ=0.100;LDAF=0.2929;AVGPOST=0.7858;RSQ=0.5931;ERATE=0.0120;THETA=0.0006;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 134627040 . T TA 255 PASS INDEL;BAVGPOST=0.707;BRSQ=0.040;LDAF=0.2029;AVGPOST=0.7445;RSQ=0.3724;ERATE=0.0106;THETA=0.0005;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 134627064 . T TA 364 PASS INDEL;BAVGPOST=0.756;BRSQ=0.048;LDAF=0.2594;AVGPOST=0.6403;RSQ=0.2110;ERATE=0.0317;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134627068 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.195;LDAF=0.2614;AVGPOST=0.6722;RSQ=0.2906;ERATE=0.0266;THETA=0.0006;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 134627124 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.819;BRSQ=0.193;LDAF=0.2211;AVGPOST=0.7190;RSQ=0.3205;ERATE=0.0197;THETA=0.0007;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 134627130 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.851;BRSQ=0.168;LDAF=0.1475;AVGPOST=0.8229;RSQ=0.4157;ERATE=0.0075;THETA=0.0012;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 134627131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.133;LDAF=0.1837;AVGPOST=0.7363;RSQ=0.2882;ERATE=0.0190;THETA=0.0003;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 134627156 . TATA T 697 PASS INDEL;BAVGPOST=0.864;BRSQ=0.174;LDAF=0.1187;AVGPOST=0.8655;RSQ=0.5134;ERATE=0.0045;THETA=0.0009;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 134627193 . AAT A 48 PASS INDEL;BAVGPOST=0.872;BRSQ=0.159;LDAF=0.0923;AVGPOST=0.9061;RSQ=0.5918;ERATE=0.0021;THETA=0.0006;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 134627196 . ATAT A 896 PASS INDEL;BAVGPOST=0.861;BRSQ=0.183;LDAF=0.1798;AVGPOST=0.7690;RSQ=0.3855;ERATE=0.0110;THETA=0.0005;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 134627197 rs111967984 G GT 37372 PASS INDEL;BAVGPOST=0.999;BRSQ=0;LDAF=0.9955;AVGPOST=0.9939;RSQ=0.4735;ERATE=0.0006;THETA=0.0004;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 134627295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.966;LDAF=0.2267;AVGPOST=0.9736;RSQ=0.9419;ERATE=0.0035;THETA=0.0005;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 134627354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0064;AVGPOST=0.9936;RSQ=0.6065;ERATE=0.0008;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134627542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0120;AVGPOST=0.9959;RSQ=0.8810;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134627545 . CG C 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8949;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134627587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0192;AVGPOST=0.9991;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 134627629 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4540;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134627689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0785;AVGPOST=0.9982;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 134627734 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5634;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134627741 . G GT 109 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0027;AVGPOST=0.9962;RSQ=0.4445;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134627958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0112;AVGPOST=0.9988;RSQ=0.9611;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134628048 . GT G 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3265;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134628078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134628110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.814;LDAF=0.0137;AVGPOST=0.9964;RSQ=0.9000;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134628129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7279;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134628158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4876;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134628176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0682;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 134628215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2809;AVGPOST=0.9954;RSQ=0.9913;ERATE=0.0005;THETA=0.0008;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 134628296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7440;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134628311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0042;AVGPOST=0.9962;RSQ=0.6415;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134628314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0363;AVGPOST=0.9977;RSQ=0.9781;ERATE=0.0006;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 134628411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9275;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134628424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0689;AVGPOST=0.9994;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134628456 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1667;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 134628514 . ATTATAC A 14101 PASS INDEL;BAVGPOST=0.979;BRSQ=0.942;LDAF=0.1510;AVGPOST=0.9882;RSQ=0.9676;ERATE=0.0008;THETA=0.0002;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 134628552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2813;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0006;THETA=0.0003;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 134628572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.785;LDAF=0.0099;AVGPOST=0.9940;RSQ=0.7543;ERATE=0.0006;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134628597 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134628651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1878;AVGPOST=0.9978;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 134628719 . AGG A 10 PASS INDEL;BAVGPOST=0.946;BRSQ=0.202;LDAF=0.1250;AVGPOST=0.8349;RSQ=0.4135;ERATE=0.0043;THETA=0.0007;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 134628968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6843;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134629011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7628;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134629021 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7416;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134629044 . A AT 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4283;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134629149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0049;AVGPOST=0.9941;RSQ=0.5253;ERATE=0.0009;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134629156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4774;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134629182 . CAT C 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134629259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0923;AVGPOST=0.9990;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 134629336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134629511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.7321;AVGPOST=0.9930;RSQ=0.9862;ERATE=0.0011;THETA=0.0004;AC=1601;AN=2184 GT:DS:GL:BD 0.73305863 1 1 134629515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1946;AVGPOST=0.9975;RSQ=0.9934;ERATE=0.0005;THETA=0.0024;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 134629663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0043;AVGPOST=0.9958;RSQ=0.5949;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134629709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134629723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8605;ERATE=0.0004;THETA=0.0022;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134629801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1875;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0005;THETA=0.0002;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 134629946 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0629;AVGPOST=0.9976;RSQ=0.9832;ERATE=0.0006;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 134630045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.937;LDAF=0.2160;AVGPOST=0.9894;RSQ=0.9753;ERATE=0.0019;THETA=0.0002;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 134630128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.927;LDAF=0.0675;AVGPOST=0.9924;RSQ=0.9537;ERATE=0.0005;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 134630148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.948;LDAF=0.1372;AVGPOST=0.9941;RSQ=0.9793;ERATE=0.0007;THETA=0.0006;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 134630158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.949;LDAF=0.2885;AVGPOST=0.9432;RSQ=0.8958;ERATE=0.0071;THETA=0.0002;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 134630200 . C CA 886 PASS INDEL;BAVGPOST=0.964;BRSQ=0.816;LDAF=0.1236;AVGPOST=0.9119;RSQ=0.6983;ERATE=0.0091;THETA=0.0002;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 134630331 rs35174802 A AG 7025 PASS INDEL;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0819;AVGPOST=0.9962;RSQ=0.9783;ERATE=0.0006;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 134630338 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2866;AVGPOST=0.9973;RSQ=0.9941;ERATE=0.0005;THETA=0.0002;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 134630351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134630368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.954;LDAF=0.0508;AVGPOST=0.9936;RSQ=0.9559;ERATE=0.0003;THETA=0.0003;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 134630411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5730;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134630525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7861;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134630554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134630657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0800;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 134630673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134630746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134630759 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6718;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134630803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134631105 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0108;AVGPOST=0.9950;RSQ=0.8162;ERATE=0.0010;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134631168 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0924;AVGPOST=0.9997;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 134631208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9985;RSQ=0.9274;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 134631275 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1870;AVGPOST=0.9952;RSQ=0.9875;ERATE=0.0005;THETA=0.0001;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 134631389 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1863;AVGPOST=0.9965;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 134631398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2654;AVGPOST=0.9964;RSQ=0.9925;ERATE=0.0004;THETA=0.0004;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 134631413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4587;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134631467 . A AT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0135;AVGPOST=0.9901;RSQ=0.7271;ERATE=0.0009;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134631514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4461;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134631598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8587;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134631600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134631631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134631662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0181;AVGPOST=0.9976;RSQ=0.9539;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 134631754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1244;AVGPOST=0.9972;RSQ=0.9905;ERATE=0.0005;THETA=0.0003;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 134631862 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0135;AVGPOST=0.9983;RSQ=0.9520;ERATE=0.0005;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134631873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1233;AVGPOST=0.9993;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 134631902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134631948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0115;AVGPOST=0.9976;RSQ=0.9250;ERATE=0.0005;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134632030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1494;AVGPOST=0.9988;RSQ=0.9958;ERATE=0.0005;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 134632037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2858;AVGPOST=0.9972;RSQ=0.9943;ERATE=0.0007;THETA=0.0003;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 134632051 . AG A 169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8935;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134632414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134632465 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4896;AVGPOST=0.9974;RSQ=0.9957;ERATE=0.0007;THETA=0.0003;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 134632488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134632557 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134632639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8399;ERATE=0.0006;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134632803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9886;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 134632811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134632840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9389;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134632982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633014 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7097;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134633022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.846;LDAF=0.0089;AVGPOST=0.9969;RSQ=0.8640;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134633209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633320 . ACT A 32 PASS INDEL;BAVGPOST=0.993;BRSQ=0.696;LDAF=0.0179;AVGPOST=0.9824;RSQ=0.5797;ERATE=0.0080;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134633377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4749;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0005;THETA=0.0003;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 134633428 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9733;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134633575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9885;AVGPOST=0.9995;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 134633579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633671 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4575;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5096;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134633918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134633968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.907;LDAF=0.0173;AVGPOST=0.9968;RSQ=0.9232;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 134633997 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.3026;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134634020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4749;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 134634040 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1488;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 134634143 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9627;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134634197 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9912;AVGPOST=0.9985;RSQ=0.9356;ERATE=0.0004;THETA=0.0027;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 134634202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6810;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134634245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134634354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0087;AVGPOST=0.9982;RSQ=0.9162;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134634373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4749;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 134634407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9787;AVGPOST=0.9994;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 134634430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9745;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134634444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8174;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134634446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134634455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1489;AVGPOST=0.9978;RSQ=0.9929;ERATE=0.0003;THETA=0.0005;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 134634510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.357;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4733;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134634608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.623;LDAF=0.0035;AVGPOST=0.9978;RSQ=0.7276;ERATE=0.0005;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134634693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1487;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0021;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 134634886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=1.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0017;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 134635212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134635347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.858;LDAF=0.0094;AVGPOST=0.9970;RSQ=0.8842;ERATE=0.0006;THETA=0.0111;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134635348 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7636;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134635355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0003;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134635459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9021;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134635536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7347;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134635576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.557;LDAF=0.0053;AVGPOST=0.9938;RSQ=0.5600;ERATE=0.0027;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134635654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7747;ERATE=0.0004;THETA=0.0062;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134635924 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134636004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.918;LDAF=0.1214;AVGPOST=0.9832;RSQ=0.9447;ERATE=0.0029;THETA=0.0015;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134636051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7984;ERATE=0.0003;THETA=0.0023;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134636069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.9988;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0003;THETA=0.0033;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 134636096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.9845;AVGPOST=0.9990;RSQ=0.9757;ERATE=0.0006;THETA=0.0006;AC=2151;AN=2184 GT:DS:GL:BD 0.98489010 1 1 134636136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7721;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134636184 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.919;LDAF=0.1594;AVGPOST=0.9665;RSQ=0.9082;ERATE=0.0068;THETA=0.0013;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 134636218 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0072;AVGPOST=0.9991;RSQ=0.9399;ERATE=0.0003;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 134636247 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.9346;AVGPOST=0.9957;RSQ=0.9749;ERATE=0.0007;THETA=0.0006;AC=2042;AN=2184 GT:DS:GL:BD 0.93498170 1 1 134636252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134636271 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.926;LDAF=0.3249;AVGPOST=0.9575;RSQ=0.9230;ERATE=0.0107;THETA=0.0015;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 134636324 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6315;ERATE=0.0008;THETA=0.0089;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134636330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.958;LDAF=0.1991;AVGPOST=0.9860;RSQ=0.9683;ERATE=0.0011;THETA=0.0097;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 134636345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9561;ERATE=0.0002;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 134636437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7410;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134636491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5863;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134636518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9146;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134636530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9990;RSQ=0.9922;ERATE=0.0002;THETA=0.0006;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 134636547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134636580 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.9312;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134636622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0830;AVGPOST=0.9989;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 134636657 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1357;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 134636738 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1097;AVGPOST=0.9983;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 134636856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0052;AVGPOST=0.9981;RSQ=0.8738;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134636872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1267;AVGPOST=0.9985;RSQ=0.9954;ERATE=0.0002;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134636881 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0441;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134637020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6054;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134637047 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134637061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134637102 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134637231 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134637256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134637329 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0002;THETA=0.0043;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134637331 rs58519999 GTTA G 410 PASS INDEL;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8989;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134637498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8999;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134637518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0539;AVGPOST=0.9981;RSQ=0.9836;ERATE=0.0006;THETA=0.0006;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 134637592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.9091;ERATE=0.0002;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 134637717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0406;AVGPOST=0.9981;RSQ=0.9831;ERATE=0.0002;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 134637759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134638021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8673;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134638077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8141;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134638118 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0409;AVGPOST=0.9986;RSQ=0.9847;ERATE=0.0003;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 134638127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134638146 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134638225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0473;AVGPOST=0.9993;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 134638319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0824;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0002;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 134638330 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1274;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 134638405 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2634;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 134638429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1365;AVGPOST=0.9982;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 134638454 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0834;AVGPOST=0.9986;RSQ=0.9946;ERATE=0.0003;THETA=0.0008;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 134638547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9742;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134638576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7413;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134638590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0215;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0002;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 134638657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9372;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134638668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134638703 . TG T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134638750 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134638751 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134638762 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9695;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134638858 . TCA T 346 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134639080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0532;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0002;THETA=0.0008;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 134639108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1278;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0005;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 134639156 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8133;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134639222 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9781;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134639254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7263;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134639287 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6589;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134639371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9398;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134639380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9598;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134639402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7635;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134639424 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0002;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 134639441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1196;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134639447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134639488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0562;AVGPOST=0.9981;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 134639590 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3035;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0002;THETA=0.0004;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 134639648 . C CA 2623 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0303;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134639736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7971;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134639770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0487;AVGPOST=0.9993;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 134639851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0302;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0002;THETA=0.0002;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 134639909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9436;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134640001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5610;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134640036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1275;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 134640221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7556;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134640291 . CT C 1596 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9666;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134640291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0164;AVGPOST=0.9970;RSQ=0.9279;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134640295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134640300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1195;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134640447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9458;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134640932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134640957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0002;THETA=0.0010;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134641175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134641187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134641473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4327;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0009;THETA=0.0003;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 134641490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9112;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134641535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4327;AVGPOST=0.9972;RSQ=0.9949;ERATE=0.0009;THETA=0.0004;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 134641628 . CA C 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6354;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134641764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8060;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134641841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134641894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0319;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 134642009 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5588;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134642012 . C CT 1399 PASS INDEL;BAVGPOST=0.988;BRSQ=0.838;LDAF=0.0523;AVGPOST=0.9653;RSQ=0.7337;ERATE=0.0045;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134642138 . C CT 1254 PASS INDEL;BAVGPOST=0.964;BRSQ=0.681;LDAF=0.0966;AVGPOST=0.9108;RSQ=0.6125;ERATE=0.0094;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 134642148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.4288;AVGPOST=0.9903;RSQ=0.9847;ERATE=0.0008;THETA=0.0012;AC=940;AN=2184 GT:DS:GL:BD 0.43040293 0 1 134642225 . T TG 2432 PASS INDEL;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0340;AVGPOST=0.9964;RSQ=0.9645;ERATE=0.0006;THETA=0.0002;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134642246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9302;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 134642333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.801;LDAF=0.0169;AVGPOST=0.9932;RSQ=0.8450;ERATE=0.0003;THETA=0.0009;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134642334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.9989;AVGPOST=0.9987;RSQ=0.4595;ERATE=0.0005;THETA=0.0002;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 134642455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0583;AVGPOST=0.9991;RSQ=0.9935;ERATE=0.0004;THETA=0.0002;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134642672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134642743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134642766 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134642771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134642775 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134642831 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6642;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 134642835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0587;AVGPOST=0.9988;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 134642923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.950;LDAF=0.4159;AVGPOST=0.9758;RSQ=0.9620;ERATE=0.0032;THETA=0.0003;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 134642927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.4343;AVGPOST=0.9894;RSQ=0.9833;ERATE=0.0028;THETA=0.0007;AC=951;AN=2184 GT:DS:GL:BD 0.43543956 0 1 134643023 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7505;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134643089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.570;LDAF=0.0046;AVGPOST=0.9965;RSQ=0.6920;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134643156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8188;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134643159 . AG A 152 PASS INDEL;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5985;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134643182 . T TA 52 PASS INDEL;BAVGPOST=0.991;BRSQ=0.563;LDAF=0.0223;AVGPOST=0.9691;RSQ=0.4585;ERATE=0.0054;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 134643332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5380;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134643423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.6375;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134643440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6598;AVGPOST=0.9895;RSQ=0.9815;ERATE=0.0015;THETA=0.0003;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 134643455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5614;ERATE=0.0005;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134643539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0043;AVGPOST=0.9960;RSQ=0.6535;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134643545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7428;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134643559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7867;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134643560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7676;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134643621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8330;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134643639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1627;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 134643678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0072;AVGPOST=0.9955;RSQ=0.7610;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134643744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6382;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134643842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1551;AVGPOST=0.9961;RSQ=0.9890;ERATE=0.0004;THETA=0.0004;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 134643850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134643919 . ATC A 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134643925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8203;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134643959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6736;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134644199 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0685;AVGPOST=0.9987;RSQ=0.9910;ERATE=0.0005;THETA=0.0002;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 134644816 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7944;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134644967 . CT C 1140 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0090;AVGPOST=0.9977;RSQ=0.9136;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134645114 . AT A 3991 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0324;AVGPOST=0.9981;RSQ=0.9778;ERATE=0.0005;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 134645116 . CGTGA C 350 PASS INDEL;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.7220;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134645438 . G GC 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134645531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8019;ERATE=0.0003;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134645532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0031;AVGPOST=0.9949;RSQ=0.3217;ERATE=0.0008;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134645602 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.0321;AVGPOST=0.9969;RSQ=0.9677;ERATE=0.0004;THETA=0.0002;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 134645775 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1746;AVGPOST=0.9975;RSQ=0.9930;ERATE=0.0005;THETA=0.0015;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 134645832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6792;ERATE=0.0005;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134645837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5338;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134645857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134645858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7007;ERATE=0.0004;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134645882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6647;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134646078 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1421;AVGPOST=0.9984;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 134646104 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.463;LDAF=0.0873;AVGPOST=0.8913;RSQ=0.4534;ERATE=0.0330;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 134646140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4493;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134646203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0015;AVGPOST=0.9977;RSQ=0.4333;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134646355 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.576;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9154;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134646432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.904;LDAF=0.0481;AVGPOST=0.9947;RSQ=0.9582;ERATE=0.0007;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 134646611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.941;LDAF=0.4868;AVGPOST=0.9873;RSQ=0.9798;ERATE=0.0005;THETA=0.0004;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 134646745 . GTT G 10941 PASS INDEL;BAVGPOST=0.945;BRSQ=0.848;LDAF=0.2005;AVGPOST=0.9485;RSQ=0.8849;ERATE=0.0080;THETA=0.0005;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 134646753 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6961;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134646790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.597;LDAF=0.0059;AVGPOST=0.9946;RSQ=0.6570;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134646809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0699;AVGPOST=0.9946;RSQ=0.9684;ERATE=0.0005;THETA=0.0006;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 134646829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.861;LDAF=0.4364;AVGPOST=0.9230;RSQ=0.8825;ERATE=0.0089;THETA=0.0002;AC=968;AN=2184 GT:DS:GL:BD 0.44322345 0 1 134646870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0045;AVGPOST=0.9951;RSQ=0.5506;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134646936 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1269;AVGPOST=0.9960;RSQ=0.9839;ERATE=0.0006;THETA=0.0004;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 134646969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0853;AVGPOST=0.9990;RSQ=0.9942;ERATE=0.0004;THETA=0.0001;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 134647057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5987;ERATE=0.0006;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134647180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0673;AVGPOST=0.9986;RSQ=0.9903;ERATE=0.0003;THETA=0.0002;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 134647401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8469;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134647567 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2268;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0004;THETA=0.0001;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 134647695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.949;LDAF=0.1439;AVGPOST=0.9908;RSQ=0.9722;ERATE=0.0009;THETA=0.0001;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 134647764 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134647809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134647846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.991;LDAF=0.4943;AVGPOST=0.9786;RSQ=0.9681;ERATE=0.0051;THETA=0.0009;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 134647850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0329;AVGPOST=0.9989;RSQ=0.9868;ERATE=0.0003;THETA=0.0002;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134647928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.902;LDAF=0.0154;AVGPOST=0.9972;RSQ=0.9370;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 134647965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7469;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134648167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4895;AVGPOST=0.9924;RSQ=0.9882;ERATE=0.0010;THETA=0.0003;AC=1072;AN=2184 GT:DS:GL:BD 0.49084249 0 1 134648177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7139;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134648228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0325;AVGPOST=0.9995;RSQ=0.9921;ERATE=0.0003;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134648297 . AG A 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6362;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134648304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0050;AVGPOST=0.9937;RSQ=0.4906;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134648396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0382;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134648406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0063;AVGPOST=0.9959;RSQ=0.7796;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134648560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0434;AVGPOST=0.9965;RSQ=0.9678;ERATE=0.0005;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 134648617 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4970;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134648679 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.970;LDAF=0.4771;AVGPOST=0.9674;RSQ=0.9502;ERATE=0.0036;THETA=0.0003;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 134648802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0062;AVGPOST=0.9958;RSQ=0.7150;ERATE=0.0005;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134648845 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1262;AVGPOST=0.9981;RSQ=0.9930;ERATE=0.0006;THETA=0.0021;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134648888 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0853;AVGPOST=0.9991;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 134648934 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134649004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1848;AVGPOST=0.9976;RSQ=0.9940;ERATE=0.0006;THETA=0.0003;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 134649062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7888;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134649167 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7612;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134649241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0397;AVGPOST=0.9974;RSQ=0.9749;ERATE=0.0004;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 134649247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.955;LDAF=0.1264;AVGPOST=0.9947;RSQ=0.9822;ERATE=0.0009;THETA=0.0002;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 134649311 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1860;AVGPOST=0.9978;RSQ=0.9948;ERATE=0.0006;THETA=0.0003;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 134649432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6208;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134649535 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0328;AVGPOST=0.9993;RSQ=0.9913;ERATE=0.0003;THETA=0.0010;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134649638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134649641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134649661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1192;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134649687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1196;AVGPOST=0.9983;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 134649722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1846;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0003;THETA=0.0008;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 134649782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7674;ERATE=0.0004;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134649788 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0848;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0002;THETA=0.0002;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 134649797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134649816 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134649823 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 134649829 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 134649898 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134649986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8426;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=1840;AN=2184 GT:DS:GL:BD 0.84249085 1 1 134650051 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134650180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1258;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0002;THETA=0.0003;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 134650183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2210;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 134650188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9988;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 134650223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0381;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0002;THETA=0.0017;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 134650262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0002;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134650383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1514;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 134650679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7105;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134650699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9981;ERATE=0.0002;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134650816 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1248;AVGPOST=0.9990;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 134651094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2204;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 134651307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0129;AVGPOST=0.9995;RSQ=0.9820;ERATE=0.0002;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 134651391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1504;AVGPOST=0.9985;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 134651404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0207;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 134651536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1519;AVGPOST=0.9989;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 134651552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0083;AVGPOST=0.9982;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 134651610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134651761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7529;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134651774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7324;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=1601;AN=2184 GT:DS:GL:BD 0.73305863 1 1 134651889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134651924 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6684;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134651926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134652048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0427;AVGPOST=0.9988;RSQ=0.9902;ERATE=0.0014;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 134652156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134652185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134652339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134652463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4245;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0003;THETA=0.0029;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 134652571 . TG T 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134652575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134652611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0002;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 134652674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134652740 MERGED_DEL_2_7575 G ADELA . . SV;BAVGPOST=1.000;BRSQ=0;LDAF=0.0009;AVGPOST=0.9982;RSQ=0.0783;ERATE=0.0004;THETA=0.0003;CIEND=-6;51;CIPOS=-24;15;END=228482687;SOURCE=Pindel_228481237_228482687;SVTYPE=DEL;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 134652844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134652863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134652864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134652921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8898;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134652984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0059;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0002;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134652989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8345;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134652990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6168;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134653073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0352;AVGPOST=0.9999;RSQ=0.9983;ERATE=0.0002;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134653148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 134653158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0002;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134653366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8497;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134653482 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0002;THETA=0.0001;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 134653504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134653518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9789;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134653524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134653589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3912;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0002;THETA=0.0002;AC=856;AN=2184 GT:DS:GL:BD 0.39194140 0 1 134653617 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2198;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0002;THETA=0.0003;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 134653635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0154;AVGPOST=0.9987;RSQ=0.9662;ERATE=0.0002;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 134653666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134653675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134653766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9860;ERATE=0.0002;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134653767 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0352;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0002;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 134653771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 134653821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7175;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134653886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7326;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0002;THETA=0.0003;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 134653892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134654051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9871;ERATE=0.0002;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 134654176 . AG A 288 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5971;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134654237 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134654270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134654455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0124;AVGPOST=0.9984;RSQ=0.9378;ERATE=0.0005;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 134654646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134654692 rs112450287 GGT G 1308 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9993;RSQ=0.9656;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134654777 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134654851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7309;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=1598;AN=2184 GT:DS:GL:BD 0.73168498 1 1 134654976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134655092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7305;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=1597;AN=2184 GT:DS:GL:BD 0.73122710 1 1 134655236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9427;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 134655320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9205;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 134655494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5717;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134655558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6112;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134655713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9788;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 134655810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 134655982 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6197;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7342;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134656155 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656229 . AG A 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6689;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 134656330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0966;AVGPOST=0.9973;RSQ=0.9877;ERATE=0.0004;THETA=0.0044;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 134656351 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.857;LDAF=0.0207;AVGPOST=0.9907;RSQ=0.8319;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 134656487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0415;AVGPOST=0.9985;RSQ=0.9868;ERATE=0.0005;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134656534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9389;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 134656690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0062;AVGPOST=0.9984;RSQ=0.8980;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 134656836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5096;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 134656883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8847;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134656940 . C CA 675 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9979;RSQ=0.9069;ERATE=0.0005;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134656944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9794;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 134657016 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6797;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 134657030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 134657107 . GA G 511 PASS INDEL;BAVGPOST=0.951;BRSQ=0.629;LDAF=0.0779;AVGPOST=0.9490;RSQ=0.7486;ERATE=0.0015;THETA=0.0004;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 134657109 . AT A 7826 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0412;AVGPOST=0.9987;RSQ=0.9889;ERATE=0.0004;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 134657116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8169;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 134657240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0402;AVGPOST=0.9984;RSQ=0.9866;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 134657326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.881;LDAF=0.1615;AVGPOST=0.9692;RSQ=0.9190;ERATE=0.0010;THETA=0.0006;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0