1092 10000 1 149735608 . C CT 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9966;RSQ=0.7805;ERATE=0.0007;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149735665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8202;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149735823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0048;AVGPOST=0.9963;RSQ=0.7390;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149735848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9992;RSQ=0.9619;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149735874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8314;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149735879 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4997;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149736119 . ATG A 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6798;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149736268 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5637;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149736279 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0784;AVGPOST=0.9959;RSQ=0.9786;ERATE=0.0004;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 149736297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0116;AVGPOST=0.9994;RSQ=0.9775;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149736422 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8726;ERATE=0.0003;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149736423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149736801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9002;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149736935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6131;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149736961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0183;AVGPOST=0.9996;RSQ=0.9926;ERATE=0.0004;THETA=0.0021;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149737005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6295;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149737112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149737124 . CA C 318 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0075;AVGPOST=0.9953;RSQ=0.7835;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149737194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149737276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149737334 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2214;AVGPOST=0.9976;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 149737343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2206;AVGPOST=0.9967;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 149737384 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2045;AVGPOST=0.9952;RSQ=0.9902;ERATE=0.0003;THETA=0.0009;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 149737396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2211;AVGPOST=0.9971;RSQ=0.9937;ERATE=0.0004;THETA=0.0006;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 149737431 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5938;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149737458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0655;AVGPOST=0.9990;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 149737472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6092;ERATE=0.0004;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149737665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8346;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149737767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149737821 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149737862 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7876;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149737947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149737989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149738063 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7642;ERATE=0.0010;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149738217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149738386 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0144;AVGPOST=0.9994;RSQ=0.9786;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149738445 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149738574 . TC T 1257 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9421;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149738592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149738665 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0975;AVGPOST=0.9979;RSQ=0.9912;ERATE=0.0004;THETA=0.0100;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 149738670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.783;LDAF=0.1835;AVGPOST=0.8862;RSQ=0.6736;ERATE=0.0347;THETA=0.0013;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 149738814 . C CA 444 PASS INDEL;BAVGPOST=0.942;BRSQ=0.431;LDAF=0.1072;AVGPOST=0.8632;RSQ=0.4051;ERATE=0.0256;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 149738818 . AAAG A 441 PASS INDEL;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0060;AVGPOST=0.9973;RSQ=0.8619;ERATE=0.0005;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149738828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9261;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149738943 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9337;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149738944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149738953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6804;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149739027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7636;ERATE=0.0009;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149739059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8737;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149739095 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5294;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149739181 . CAAG C 570 PASS INDEL;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8904;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149739286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8220;ERATE=0.0011;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149739341 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0079;AVGPOST=0.9977;RSQ=0.8907;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149739367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149739378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149739538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149739767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8136;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149739897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149739959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0234;AVGPOST=0.9989;RSQ=0.9789;ERATE=0.0003;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149740183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149740311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6283;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149740337 . G GA 1139 PASS INDEL;BAVGPOST=0.918;BRSQ=0.546;LDAF=0.1380;AVGPOST=0.8749;RSQ=0.5420;ERATE=0.0525;THETA=0.0008;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 149740397 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149740446 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149740611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8923;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149740634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0426;AVGPOST=0.9997;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 149740668 . TA T 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149740686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149740765 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9321;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149740789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0056;AVGPOST=0.9994;RSQ=0.9556;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149740812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9537;ERATE=0.0003;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149740946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4733;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149741115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741132 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9179;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149741247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1824;AVGPOST=0.9972;RSQ=0.9921;ERATE=0.0005;THETA=0.0007;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 149741308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0069;AVGPOST=0.9988;RSQ=0.9300;ERATE=0.0003;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149741443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741469 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7856;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149741492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.7136;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149741787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741809 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9450;ERATE=0.0003;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149741882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149741960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0052;AVGPOST=0.9979;RSQ=0.8581;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149741971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149741972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149742051 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149742073 . A AG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3713;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149742132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9514;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149742190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0239;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149742292 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7144;ERATE=0.0009;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149742475 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0158;AVGPOST=0.9989;RSQ=0.9654;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149742514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1093;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 149742519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149742617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8442;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149742634 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149742653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149742668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9682;ERATE=0.0003;THETA=0.0026;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149742699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8879;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149742745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6725;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149742808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1590;AVGPOST=0.9983;RSQ=0.9943;ERATE=0.0004;THETA=0.0009;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 149742837 . TAC T 1322 PASS INDEL;BAVGPOST=0.986;BRSQ=0.784;LDAF=0.0461;AVGPOST=0.9630;RSQ=0.6576;ERATE=0.0112;THETA=0.0007;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 149742944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7973;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149742952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743026 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7650;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149743127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.793;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8135;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149743163 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5027;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5960;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9288;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149743268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149743293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5687;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8401;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149743710 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8220;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149743712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0050;AVGPOST=0.9975;RSQ=0.8300;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149743724 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1822;AVGPOST=0.9962;RSQ=0.9890;ERATE=0.0004;THETA=0.0005;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 149743768 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1802;AVGPOST=0.9961;RSQ=0.9885;ERATE=0.0004;THETA=0.0010;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 149743774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0002;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149743824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1053;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 149743879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6785;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149743887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0150;AVGPOST=0.9993;RSQ=0.9795;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149743892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149743940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149744102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149744133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744200 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744204 . T TC 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4020;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9806;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149744234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7900;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149744239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2902;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0002;THETA=0.0004;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 149744352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1613;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0002;THETA=0.0007;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 149744368 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0979;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0002;THETA=0.0002;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 149744445 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0002;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149744463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149744476 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1290;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 149744765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149744849 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6655;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149744954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8258;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149744973 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7981;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149745002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4853;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149745142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0053;AVGPOST=0.9956;RSQ=0.7197;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149745183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8417;ERATE=0.0005;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149745222 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9988;RSQ=0.3805;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149745229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7884;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149745251 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6992;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149745339 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5794;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149745468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1043;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0007;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 149745552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6237;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149745558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149745598 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149745634 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149745693 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149746049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6839;ERATE=0.0005;THETA=0.0084;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149746115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5670;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6594;AVGPOST=0.9917;RSQ=0.9859;ERATE=0.0008;THETA=0.0004;AC=1442;AN=2184 GT:DS:GL:BD 0.66025639 1 1 149746271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9237;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149746341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8350;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149746502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0002;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149746513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746566 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7391;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149746687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0431;AVGPOST=0.9952;RSQ=0.9528;ERATE=0.0004;THETA=0.0012;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 149746688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149746760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149746885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0159;AVGPOST=0.9974;RSQ=0.9250;ERATE=0.0006;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149746959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8117;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149747067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1856;AVGPOST=0.9982;RSQ=0.9956;ERATE=0.0004;THETA=0.0026;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 149747099 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5569;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149747105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.5293;AVGPOST=0.9908;RSQ=0.9856;ERATE=0.0009;THETA=0.0007;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 149747178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4511;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149747447 . G GGAGCA 279 PASS INDEL;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0255;AVGPOST=0.9807;RSQ=0.7173;ERATE=0.0014;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149747641 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0096;AVGPOST=0.9964;RSQ=0.8488;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149747655 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1786;AVGPOST=0.9971;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 149747822 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149747826 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5047;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0005;THETA=0.0008;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 149747869 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8384;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149747922 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6054;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149747923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5305;AVGPOST=0.9909;RSQ=0.9861;ERATE=0.0018;THETA=0.0004;AC=1157;AN=2184 GT:DS:GL:BD 0.52976191 1 1 149747960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6416;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149748086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4869;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149748098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9694;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149748143 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.8953;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149748155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0072;AVGPOST=0.9960;RSQ=0.7821;ERATE=0.0008;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149748193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0108;AVGPOST=0.9961;RSQ=0.8515;ERATE=0.0006;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149748247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0582;AVGPOST=0.9980;RSQ=0.9855;ERATE=0.0006;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 149748286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.3629;ERATE=0.0002;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149748395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4875;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149748411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0053;AVGPOST=0.9971;RSQ=0.7996;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149748547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149748623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0140;AVGPOST=0.9986;RSQ=0.9599;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149748805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9994;RSQ=0.9880;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149748839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0707;AVGPOST=0.9993;RSQ=0.9963;ERATE=0.0003;THETA=0.0009;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 149748891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149748961 . G GA 239 PASS INDEL;BAVGPOST=0.994;BRSQ=0.504;LDAF=0.0115;AVGPOST=0.9851;RSQ=0.4968;ERATE=0.0032;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149748977 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6169;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149749034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9110;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149749106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8871;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149749125 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0294;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 149749148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149749170 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.9099;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149749177 . C CT 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5836;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149749254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149749277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.4383;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149749348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0102;AVGPOST=0.9975;RSQ=0.8951;ERATE=0.0005;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149749496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0423;AVGPOST=0.9980;RSQ=0.9806;ERATE=0.0004;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 149749497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5051;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149749541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9498;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149749595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1200;AVGPOST=0.9987;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 149749620 . AT A 123 PASS INDEL;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.7908;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149749777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149749837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149749841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9099;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149749842 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0037;AVGPOST=0.9957;RSQ=0.5398;ERATE=0.0017;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149749999 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.769;LDAF=0.0107;AVGPOST=0.9965;RSQ=0.8725;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149750006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9227;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149750209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149750271 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0767;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 149750312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9541;ERATE=0.0003;THETA=0.0033;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149750343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149750372 rs58076354 C CT 3997 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0223;AVGPOST=0.9987;RSQ=0.9784;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149750617 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149750666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149750694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8624;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149750737 . C CT 1344 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9700;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149750774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2287;AVGPOST=0.9963;RSQ=0.9914;ERATE=0.0005;THETA=0.0005;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 149750910 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0412;AVGPOST=0.9996;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 149750983 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149751015 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0112;AVGPOST=0.9988;RSQ=0.9619;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149751077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8607;ERATE=0.0003;THETA=0.0061;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149751128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0071;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149751325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6443;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149751389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149751434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7458;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149751470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9579;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149751611 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8870;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149751640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9078;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149751690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9716;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149751845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7915;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149752060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8134;ERATE=0.0004;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149752130 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752186 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149752249 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9900;ERATE=0.0003;THETA=0.0020;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149752338 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149752422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 149752601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149752631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0059;AVGPOST=0.9979;RSQ=0.8607;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149752689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149752739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8963;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149752752 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2197;AVGPOST=0.9982;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 149752757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149752758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149752803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149752948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149753015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6453;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149753064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0434;AVGPOST=0.9980;RSQ=0.9838;ERATE=0.0004;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 149753153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0310;AVGPOST=0.9971;RSQ=0.9612;ERATE=0.0006;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 149753164 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2197;AVGPOST=0.9975;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 149753189 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0072;AVGPOST=0.9920;RSQ=0.5673;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149753412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149753543 . GACA G 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149753621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8332;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149753633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8109;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149753642 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9912;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149753659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0101;AVGPOST=0.9994;RSQ=0.9703;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149753705 . TG T 747 PASS INDEL;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8463;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149753758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0662;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149753801 . G GATA 1356 PASS INDEL;BAVGPOST=0.995;BRSQ=0.876;LDAF=0.0218;AVGPOST=0.9995;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149753836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8424;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149753935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4304;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149753984 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5856;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149753992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149754074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149754085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9996;AVGPOST=0.9993;RSQ=0.0618;ERATE=0.0005;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 149754115 . T TA 31 PASS INDEL;BAVGPOST=0.987;BRSQ=0.432;LDAF=0.0217;AVGPOST=0.9716;RSQ=0.4724;ERATE=0.0039;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149754157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5899;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149754175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7936;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149754241 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.1059;AVGPOST=0.9945;RSQ=0.9795;ERATE=0.0006;THETA=0.0002;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 149754423 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0036;AVGPOST=0.9938;RSQ=0.2433;ERATE=0.0010;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149754523 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8540;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149754662 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5891;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149754771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9991;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149754850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149754864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149754909 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8126;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149754923 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0234;AVGPOST=0.9991;RSQ=0.9871;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149755055 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149755196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149755246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3973;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0004;THETA=0.0002;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 149755301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149755326 rs11456460 G GT 3065 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0230;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0004;THETA=0.0043;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149755368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149755428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8608;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149755460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0125;AVGPOST=0.9993;RSQ=0.9795;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149755517 . ATG A 104 PASS INDEL;BAVGPOST=0.987;BRSQ=0.652;LDAF=0.0369;AVGPOST=0.9573;RSQ=0.5112;ERATE=0.0160;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149755638 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149755771 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8391;AVGPOST=0.9974;RSQ=0.9932;ERATE=0.0007;THETA=0.0004;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 149755847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2790;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0004;THETA=0.0002;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 149755858 . G GT 765 PASS INDEL;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.8084;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149755874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0229;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149755918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9873;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149755921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149756057 . CTG C 425 PASS INDEL;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8515;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149756194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149756256 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8310;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0004;THETA=0.0007;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 149756274 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6521;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149756303 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8439;AVGPOST=0.9971;RSQ=0.9915;ERATE=0.0006;THETA=0.0003;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 149756330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0099;AVGPOST=0.9945;RSQ=0.7697;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149756350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9772;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149756391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149756394 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.663;LDAF=0.0054;AVGPOST=0.9953;RSQ=0.6568;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149756430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0036;AVGPOST=0.9952;RSQ=0.4332;ERATE=0.0008;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149756457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.5067;AVGPOST=0.9887;RSQ=0.9832;ERATE=0.0022;THETA=0.0002;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 149756814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5604;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149756959 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2894;AVGPOST=0.9966;RSQ=0.9942;ERATE=0.0010;THETA=0.0002;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 149757299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9605;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149757420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149757435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3498;AVGPOST=0.9981;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=764;AN=2184 GT:DS:GL:BD 0.34981686 0 1 149757461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0164;AVGPOST=0.9969;RSQ=0.9258;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149757462 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4750;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0003;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 149757506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149757546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8539;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149757640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149757651 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9361;ERATE=0.0003;THETA=0.0041;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149757791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149757853 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5405;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149757861 . C CTATG 161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4168;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149757964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8681;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149757987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3243;AVGPOST=0.9968;RSQ=0.9941;ERATE=0.0007;THETA=0.0002;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 149758024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.0832;AVGPOST=0.9976;RSQ=0.9889;ERATE=0.0004;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 149758149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0051;AVGPOST=0.9973;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149758189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2547;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0005;THETA=0.0002;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 149758284 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.872;LDAF=0.0133;AVGPOST=0.9959;RSQ=0.8762;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149758302 . C CTT 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149758305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9987;RSQ=0.9430;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149758348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5503;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149758349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9243;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149758353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8257;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149758560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8933;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149758578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6283;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149758606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4766;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149758641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149758703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.9991;AVGPOST=0.9991;RSQ=0.6713;ERATE=0.0003;THETA=0.0002;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 149758771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149758781 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149758876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9888;AVGPOST=0.9994;RSQ=0.9785;ERATE=0.0003;THETA=0.0007;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 149758985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9175;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149758997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9704;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149759060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.817;LDAF=0.0222;AVGPOST=0.9944;RSQ=0.8982;ERATE=0.0006;THETA=0.0012;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 149759065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7605;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149759120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4653;AVGPOST=0.9958;RSQ=0.9926;ERATE=0.0010;THETA=0.0005;AC=1016;AN=2184 GT:DS:GL:BD 0.46520147 0 1 149759190 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4613;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0006;THETA=0.0008;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 149759323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6671;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149759401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9914;ERATE=0.0003;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149759462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0145;AVGPOST=0.9988;RSQ=0.9640;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149759495 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149759552 rs72058355 AAC A 9956 PASS INDEL;BAVGPOST=0.992;BRSQ=0.971;LDAF=0.1543;AVGPOST=0.9983;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 149759749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9989;RSQ=0.9702;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149759770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.974;LDAF=0.9232;AVGPOST=0.9970;RSQ=0.9846;ERATE=0.0005;THETA=0.0006;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 149759844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9282;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=2027;AN=2184 GT:DS:GL:BD 0.92811358 1 1 149759974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9581;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149760074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4668;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=1018;AN=2184 GT:DS:GL:BD 0.46611720 0 1 149760116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149760167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149760198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.9984;AVGPOST=0.9986;RSQ=0.7162;ERATE=0.0004;THETA=0.0006;AC=2180;AN=2184 GT:DS:GL:BD 0.99816847 1 1 149760209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0360;AVGPOST=0.9987;RSQ=0.9834;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149760227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7620;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149760512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0037;AVGPOST=0.9954;RSQ=0.5411;ERATE=0.0010;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149760555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5778;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149760556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4801;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149760590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7560;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149760675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7175;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149760753 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0004;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 149760809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0078;AVGPOST=0.9980;RSQ=0.9006;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149760847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149760884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0173;AVGPOST=0.9993;RSQ=0.9817;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149760996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149761073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4615;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149761126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5990;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149761171 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0040;AVGPOST=0.9949;RSQ=0.5262;ERATE=0.0011;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149761201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0036;AVGPOST=0.9974;RSQ=0.7463;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149761210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149761223 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8169;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149761237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.4648;AVGPOST=0.9794;RSQ=0.9702;ERATE=0.0065;THETA=0.0003;AC=1015;AN=2184 GT:DS:GL:BD 0.46474358 0 1 149761376 . TTTC T 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149761389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.9929;AVGPOST=0.9928;RSQ=0.6065;ERATE=0.0013;THETA=0.0007;AC=2171;AN=2184 GT:DS:GL:BD 0.99404764 1 1 149761430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0038;AVGPOST=0.9968;RSQ=0.6785;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149761450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9249;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149761613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149761617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0104;AVGPOST=0.9948;RSQ=0.8021;ERATE=0.0006;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149761694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1387;AVGPOST=0.9964;RSQ=0.9882;ERATE=0.0007;THETA=0.0007;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 149761765 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9369;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149761855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0145;AVGPOST=0.9994;RSQ=0.9810;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149761987 rs34760387 C CT 101708 PASS INDEL;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.9893;AVGPOST=0.9983;RSQ=0.9345;ERATE=0.0004;THETA=0.0002;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 149762015 . T TA 32473 PASS INDEL;BAVGPOST=0.983;BRSQ=0.641;LDAF=0.9663;AVGPOST=0.9634;RSQ=0.5637;ERATE=0.0078;THETA=0.0003;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 149762016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2015;AVGPOST=0.9979;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 149762147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7258;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149762166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4164;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149762181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8171;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149762198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8188;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149762223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.916;LDAF=0.0189;AVGPOST=0.9981;RSQ=0.9644;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149762240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8010;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149762335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6260;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149762352 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.233;LDAF=0.9980;AVGPOST=0.9968;RSQ=0.4016;ERATE=0.0004;THETA=0.0003;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 149762412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9986;AVGPOST=0.9983;RSQ=0.4649;ERATE=0.0005;THETA=0.0020;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 149762443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9986;RSQ=0.9594;ERATE=0.0004;THETA=0.0028;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149762449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.514;LDAF=0.0110;AVGPOST=0.9887;RSQ=0.6119;ERATE=0.0010;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149762566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0098;AVGPOST=0.9966;RSQ=0.8903;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149762852 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4540;AVGPOST=0.9974;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=993;AN=2184 GT:DS:GL:BD 0.45467034 0 1 149762873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3147;AVGPOST=0.9974;RSQ=0.9951;ERATE=0.0004;THETA=0.0052;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 149762874 . G GC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7023;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149762881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4599;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 149762911 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6212;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149762942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.6496;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149762954 . ATT A 873 PASS INDEL;BAVGPOST=0.993;BRSQ=0.797;LDAF=0.0148;AVGPOST=0.9947;RSQ=0.8578;ERATE=0.0007;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149762961 rs71739735 GTA G 55659 PASS INDEL;BAVGPOST=0.961;BRSQ=0.629;LDAF=0.9289;AVGPOST=0.9379;RSQ=0.6369;ERATE=0.0117;THETA=0.0005;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 149762981 . TTA T 14818 PASS INDEL;BAVGPOST=0.957;BRSQ=0.335;LDAF=0.9227;AVGPOST=0.8928;RSQ=0.4044;ERATE=0.0121;THETA=0.0003;AC=2087;AN=2184 GT:DS:GL:BD 0.95558608 1 1 149763009 . CTTA C 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5629;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149763023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149763070 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9881;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 149763098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0074;AVGPOST=0.9978;RSQ=0.8801;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149763101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3189;AVGPOST=0.9948;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 149763111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9993;RSQ=0.9749;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149763112 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0344;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 149763126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5278;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149763139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9375;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149763170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4603;AVGPOST=0.9966;RSQ=0.9945;ERATE=0.0007;THETA=0.0042;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 149763225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149763286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4462;AVGPOST=0.9954;RSQ=0.9923;ERATE=0.0005;THETA=0.0004;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 149763295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149763367 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0191;AVGPOST=0.9992;RSQ=0.9827;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149763483 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0045;AVGPOST=0.9975;RSQ=0.7846;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149763495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149763690 . AAAAC A 339 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0064;AVGPOST=0.9973;RSQ=0.8459;ERATE=0.0010;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149763704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0041;AVGPOST=0.9962;RSQ=0.6219;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149763787 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5621;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149763811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9615;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149763873 . GT G 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149763889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9187;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149763969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4734;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149764042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9334;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149764087 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1720;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0002;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 149764227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149764273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6591;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 149764323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149764397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1725;AVGPOST=0.9978;RSQ=0.9939;ERATE=0.0006;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 149764481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9672;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149764483 rs113249767 A AAG 30266 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.2041;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 149764520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0396;AVGPOST=0.9992;RSQ=0.9906;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 149764541 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149764544 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1718;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 149764627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149765168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149765324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1639;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 149765350 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8671;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149765492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149765548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149765627 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149765651 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149765752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1636;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 149765779 rs34021401 CAG C 23444 PASS INDEL;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1723;AVGPOST=0.9978;RSQ=0.9940;ERATE=0.0005;THETA=0.0007;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 149765782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149765854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6565;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149765866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0321;AVGPOST=0.9986;RSQ=0.9844;ERATE=0.0002;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149765932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8519;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149765957 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0107;AVGPOST=0.9979;RSQ=0.9164;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149766100 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0002;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149766105 . T TG 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0067;AVGPOST=0.9981;RSQ=0.9011;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149766219 . G GAGAA 281 PASS INDEL;BAVGPOST=0.996;BRSQ=0.693;LDAF=0.0075;AVGPOST=0.9941;RSQ=0.6982;ERATE=0.0009;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149766231 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.738;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8519;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149766255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5938;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766281 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7535;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149766459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5672;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766470 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766542 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8183;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149766689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.978;LDAF=0.1652;AVGPOST=0.9921;RSQ=0.9790;ERATE=0.0017;THETA=0.0004;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 149766836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7430;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149766847 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9581;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149766865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149766952 . CATA C 308 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6992;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149767026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.6966;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149767086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0037;AVGPOST=0.9955;RSQ=0.5693;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149767091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.7032;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149767351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1625;AVGPOST=0.9975;RSQ=0.9926;ERATE=0.0002;THETA=0.0005;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 149767400 . T TG 2425 PASS INDEL;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0462;AVGPOST=0.9977;RSQ=0.9805;ERATE=0.0004;THETA=0.0004;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 149767411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0318;AVGPOST=0.9990;RSQ=0.9858;ERATE=0.0004;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149767459 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149767616 rs34350256 AT A 14646 PASS INDEL;BAVGPOST=0.982;BRSQ=0.945;LDAF=0.1700;AVGPOST=0.9872;RSQ=0.9645;ERATE=0.0009;THETA=0.0003;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 149767665 . TC T 792 PASS INDEL;BAVGPOST=0.958;BRSQ=0.845;LDAF=0.1570;AVGPOST=0.9809;RSQ=0.9447;ERATE=0.0010;THETA=0.0005;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 149767667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2029;AVGPOST=0.9940;RSQ=0.9860;ERATE=0.0006;THETA=0.0004;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 149767700 . AAC A 69 PASS INDEL;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6312;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149767968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.5590;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149768027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9020;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149768061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9078;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149768076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8760;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149768077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1646;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=359;AN=2184 GT:DS:GL:BD 0.16437729 0 1 149768303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0249;AVGPOST=0.9992;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149768349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149768445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7732;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149768546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149768643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.8947;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149768650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9048;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149768693 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8330;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149768804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6997;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7138;AVGPOST=0.9977;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=1560;AN=2184 GT:DS:GL:BD 0.71428573 1 1 149769208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149769269 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149769281 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149769361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8343;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149769734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149769763 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6839;AVGPOST=0.9963;RSQ=0.9931;ERATE=0.0006;THETA=0.0006;AC=1495;AN=2184 GT:DS:GL:BD 0.68452382 1 1 149769939 . C CA 270 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9977;RSQ=0.9311;ERATE=0.0006;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149769980 . A AT 233 PASS INDEL;BAVGPOST=0.960;BRSQ=0.407;LDAF=0.0670;AVGPOST=0.9106;RSQ=0.4319;ERATE=0.0166;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149769985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0131;AVGPOST=0.9975;RSQ=0.9300;ERATE=0.0006;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149769986 rs35312021 CCTCT C 49923 PASS INDEL;BAVGPOST=0.985;BRSQ=0.968;LDAF=0.6902;AVGPOST=0.9529;RSQ=0.9178;ERATE=0.0067;THETA=0.0006;AC=1534;AN=2184 GT:DS:GL:BD 0.70238096 1 1 149770063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7244;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149770112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0109;AVGPOST=0.9986;RSQ=0.9480;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149770139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.8072;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149770381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6545;AVGPOST=0.9944;RSQ=0.9899;ERATE=0.0012;THETA=0.0009;AC=1428;AN=2184 GT:DS:GL:BD 0.65384614 1 1 149770395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0054;AVGPOST=0.9975;RSQ=0.8402;ERATE=0.0006;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149770455 . G GT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5076;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149770616 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149770696 . GT G 232 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149770751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.394;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.4241;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149770967 . TA T 47 PASS INDEL;BAVGPOST=0.930;BRSQ=0.228;LDAF=0.1008;AVGPOST=0.8452;RSQ=0.3156;ERATE=0.0143;THETA=0.0008;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149771006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.946;LDAF=0.0276;AVGPOST=0.9982;RSQ=0.9738;ERATE=0.0005;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149771113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.939;LDAF=0.0302;AVGPOST=0.9931;RSQ=0.9189;ERATE=0.0008;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149771168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6359;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149771362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0062;AVGPOST=0.9980;RSQ=0.8601;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149771591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5051;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149771757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149771945 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149772051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.708;LDAF=0.0061;AVGPOST=0.9971;RSQ=0.8094;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149772057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4248;AVGPOST=0.9947;RSQ=0.9909;ERATE=0.0008;THETA=0.0006;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 149772116 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5309;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149772227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5663;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149772288 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149772456 . CA C 102 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5926;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149772481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8689;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149772576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9034;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149772676 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.776;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8145;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149772815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.5029;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149772821 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7962;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149772852 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2455;AVGPOST=0.9966;RSQ=0.9923;ERATE=0.0005;THETA=0.0006;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 149772857 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6181;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149773444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5121;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773552 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5122;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773578 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8731;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149773770 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8374;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149773833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773860 . T TA 1209 PASS INDEL;BAVGPOST=0.991;BRSQ=0.782;LDAF=0.0149;AVGPOST=0.9964;RSQ=0.9101;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149773899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149773913 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8429;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149773951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149773955 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6405;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149773995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5878;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149774091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3431;AVGPOST=0.9968;RSQ=0.9940;ERATE=0.0006;THETA=0.0005;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 149774141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0072;AVGPOST=0.9956;RSQ=0.7854;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149774210 . CCTA C 96 PASS INDEL;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6309;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149774213 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6642;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149774277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3426;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0004;THETA=0.0002;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 149774419 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3428;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0002;THETA=0.0003;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 149774421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0299;AVGPOST=0.9981;RSQ=0.9709;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149774534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8403;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149774562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149774574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0117;AVGPOST=0.9989;RSQ=0.9651;ERATE=0.0002;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149774600 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149774613 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9713;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149774636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9367;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149774822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0002;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149774829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5270;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149774836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9697;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149774880 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3434;AVGPOST=0.9984;RSQ=0.9967;ERATE=0.0005;THETA=0.0004;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 149774920 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149774937 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8348;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149774950 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0759;AVGPOST=0.9981;RSQ=0.9890;ERATE=0.0003;THETA=0.0006;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 149774960 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.735;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7783;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149775069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.933;LDAF=0.0358;AVGPOST=0.9958;RSQ=0.9575;ERATE=0.0003;THETA=0.0001;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 149775077 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0361;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0002;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149775106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9995;RSQ=0.1496;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149775117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6814;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149775162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.6098;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149775216 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7615;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149775295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0069;AVGPOST=0.9973;RSQ=0.8379;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149775305 rs113944332 AC A 7585 PASS INDEL;BAVGPOST=0.994;BRSQ=0.972;LDAF=0.1241;AVGPOST=0.9941;RSQ=0.9800;ERATE=0.0011;THETA=0.0005;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 149775329 . C CT 8618 PASS INDEL;BAVGPOST=0.995;BRSQ=0.964;LDAF=0.0671;AVGPOST=0.9984;RSQ=0.9889;ERATE=0.0004;THETA=0.0007;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 149775343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9119;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149775378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8613;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149775456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6678;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149775461 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149775560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7271;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149775580 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0214;AVGPOST=0.9988;RSQ=0.9732;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149775585 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7664;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149775587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1248;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 149775792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149775894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149775997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8189;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149776009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149776015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149776088 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1843;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 149776287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0863;AVGPOST=0.9990;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 149776379 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7820;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149776386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 149776446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149776498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1837;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 149776544 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5188;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149776551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149776560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8609;ERATE=0.0004;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149776580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0816;AVGPOST=0.9979;RSQ=0.9903;ERATE=0.0003;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 149776581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2247;AVGPOST=0.9981;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 149776606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.779;LDAF=0.0096;AVGPOST=0.9958;RSQ=0.8230;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149776622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149776638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4908;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149776684 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149776727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6551;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149776740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0059;AVGPOST=0.9983;RSQ=0.8737;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149776833 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2197;AVGPOST=0.9985;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 149776991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8400;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149776999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8383;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149777069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149777236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9118;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149777242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6187;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149777260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2195;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 149777331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5389;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149777452 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149777553 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0665;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149777599 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3441;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0007;THETA=0.0003;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 149777778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6900;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149777846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0586;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0002;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 149777847 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3442;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 149777883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0365;AVGPOST=0.9991;RSQ=0.9911;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149778110 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8088;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149778168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.940;LDAF=0.2131;AVGPOST=0.9942;RSQ=0.9873;ERATE=0.0006;THETA=0.0002;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 149778182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4586;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149778285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0339;AVGPOST=0.9977;RSQ=0.9733;ERATE=0.0004;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 149778307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.719;LDAF=0.0145;AVGPOST=0.9901;RSQ=0.7443;ERATE=0.0016;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149778331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1255;AVGPOST=0.9978;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 149778431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5490;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149778512 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9773;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149778527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7771;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149778540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2245;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 149778643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149778645 . CAT C 2028 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0139;AVGPOST=0.9966;RSQ=0.9145;ERATE=0.0003;THETA=0.0001;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149778743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0865;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 149778761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9704;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149778768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7452;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149778786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0002;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149778818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149778940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5801;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149778970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149779018 . A AC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149779039 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6854;ERATE=0.0003;THETA=0.0078;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149779196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.763;LDAF=0.0106;AVGPOST=0.9934;RSQ=0.7490;ERATE=0.0004;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149779219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.9020;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149779246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7556;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149779367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3032;AVGPOST=0.9933;RSQ=0.9876;ERATE=0.0007;THETA=0.0005;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 149779380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5699;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149779438 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149779662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8882;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149779739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9378;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149779914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2863;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0004;THETA=0.0039;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 149779967 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149779986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9993;RSQ=0.9717;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149780006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0002;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149780090 . AC A 43 PASS INDEL;BAVGPOST=0.998;BRSQ=0.440;LDAF=0.0042;AVGPOST=0.9953;RSQ=0.5456;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149780161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9979;RSQ=0.9212;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149780260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0134;AVGPOST=0.9986;RSQ=0.9603;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149780484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.586;LDAF=0.0159;AVGPOST=0.9845;RSQ=0.6105;ERATE=0.0041;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149780554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9663;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149780689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1493;AVGPOST=0.9971;RSQ=0.9916;ERATE=0.0008;THETA=0.0004;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 149780909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149780956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2930;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0002;THETA=0.0003;AC=642;AN=2184 GT:DS:GL:BD 0.29395604 0 1 149781047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2582;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 149781071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9747;ERATE=0.0002;THETA=0.0015;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149781222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149781226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149781253 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149781604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149781785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9267;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149781820 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149782018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149782020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0031;AVGPOST=0.9979;RSQ=0.7242;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149782426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0079;AVGPOST=0.9994;RSQ=0.9667;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149782666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0223;AVGPOST=0.9994;RSQ=0.9883;ERATE=0.0002;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149782726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6865;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149782736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8950;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149782879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0061;AVGPOST=0.9982;RSQ=0.8719;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149783056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.2836;AVGPOST=0.9953;RSQ=0.9927;ERATE=0.0005;THETA=0.0004;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 149783190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1003;AVGPOST=0.9950;RSQ=0.9835;ERATE=0.0004;THETA=0.0002;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 149783238 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9980;RSQ=0.8880;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149783252 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0002;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149783284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9393;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149783304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149783323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1401;AVGPOST=0.9990;RSQ=0.9969;ERATE=0.0002;THETA=0.0003;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 149783799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149783850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149783883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149783901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149783974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0002;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149784122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0372;AVGPOST=0.9988;RSQ=0.9859;ERATE=0.0002;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 149784177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2944;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0002;THETA=0.0005;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 149784184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149784328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149784361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149784448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149784469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149784486 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149784685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149784742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0022;AVGPOST=0.9997;RSQ=0.9445;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149784756 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8654;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149784838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.793;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7827;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149784845 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9716;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149785125 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149785144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149785180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149785406 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149785408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149785594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5826;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149785664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0219;AVGPOST=0.9989;RSQ=0.9774;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 149785712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0220;AVGPOST=0.9971;RSQ=0.9490;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149785765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.745;LDAF=0.0055;AVGPOST=0.9965;RSQ=0.7548;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149785791 . TG T 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4193;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149785853 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0170;AVGPOST=0.9968;RSQ=0.9217;ERATE=0.0004;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149785890 . T TA 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0043;AVGPOST=0.9943;RSQ=0.4823;ERATE=0.0013;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149785950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7766;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149785990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0039;AVGPOST=0.9965;RSQ=0.6753;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149785996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8914;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149786336 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9847;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149786419 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.808;LDAF=0.0121;AVGPOST=0.9947;RSQ=0.8304;ERATE=0.0005;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149786573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1830;AVGPOST=0.9954;RSQ=0.9862;ERATE=0.0007;THETA=0.0008;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 149786887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.567;LDAF=0.0200;AVGPOST=0.9758;RSQ=0.5139;ERATE=0.0053;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149786904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7396;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149786928 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5489;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149786961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.670;LDAF=0.0106;AVGPOST=0.9962;RSQ=0.8441;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149787057 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5006;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149787086 . TTA T 421 PASS INDEL;BAVGPOST=0.973;BRSQ=0.592;LDAF=0.0628;AVGPOST=0.9241;RSQ=0.4697;ERATE=0.0197;THETA=0.0009;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149787159 . CA C 974 PASS INDEL;BAVGPOST=0.986;BRSQ=0.799;LDAF=0.0335;AVGPOST=0.9828;RSQ=0.7889;ERATE=0.0019;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149787186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.674;LDAF=0.0059;AVGPOST=0.9929;RSQ=0.5478;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149787299 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.979;LDAF=0.1972;AVGPOST=0.9972;RSQ=0.9914;ERATE=0.0008;THETA=0.0004;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 149787403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0134;AVGPOST=0.9971;RSQ=0.9158;ERATE=0.0005;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149787446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0269;AVGPOST=0.9972;RSQ=0.9623;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149787481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0566;AVGPOST=0.9963;RSQ=0.9792;ERATE=0.0004;THETA=0.0011;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 149787499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4032;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149787563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0216;AVGPOST=0.9944;RSQ=0.9042;ERATE=0.0004;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149787709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0052;AVGPOST=0.9967;RSQ=0.7429;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149787743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7394;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149787831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0156;AVGPOST=0.9959;RSQ=0.8806;ERATE=0.0005;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149787902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.741;LDAF=0.0092;AVGPOST=0.9974;RSQ=0.9111;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149787996 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0067;AVGPOST=0.9919;RSQ=0.5529;ERATE=0.0009;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149788065 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7332;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149788148 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0295;AVGPOST=0.9992;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149788150 . ATAG A 837 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9589;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149788157 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9156;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149788354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149788368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149788398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0162;AVGPOST=0.9972;RSQ=0.9343;ERATE=0.0004;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 149788414 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149788493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1985;AVGPOST=0.9972;RSQ=0.9931;ERATE=0.0003;THETA=0.0009;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 149788598 . TAAC T 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149788648 . TGA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5378;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149788680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7446;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149788685 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0217;AVGPOST=0.9992;RSQ=0.9832;ERATE=0.0003;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 149788716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149788802 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149788825 . AG A 52 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5968;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149788828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149788860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149788887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9993;RSQ=0.9341;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149788912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7758;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149788918 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8194;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149789082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149789115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6816;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149789202 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149789203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6689;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149789355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149789370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.5469;AVGPOST=0.9921;RSQ=0.9875;ERATE=0.0005;THETA=0.0002;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 149789380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5607;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0003;THETA=0.0017;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 149789391 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5926;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0005;THETA=0.0025;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 149789547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5601;AVGPOST=0.9955;RSQ=0.9927;ERATE=0.0010;THETA=0.0035;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 149789677 rs34989891 A ACT 86716 PASS INDEL;BAVGPOST=0.967;BRSQ=0.950;LDAF=0.5493;AVGPOST=0.9804;RSQ=0.9721;ERATE=0.0007;THETA=0.0003;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 149789798 . C CTG 18562 PASS INDEL;BAVGPOST=0.968;BRSQ=0.952;LDAF=0.5491;AVGPOST=0.9803;RSQ=0.9720;ERATE=0.0003;THETA=0.0002;AC=1204;AN=2184 GT:DS:GL:BD 0.55128205 1 1 149789799 . T TCC 16785 PASS INDEL;BAVGPOST=0.965;BRSQ=0.947;LDAF=0.5454;AVGPOST=0.9762;RSQ=0.9662;ERATE=0.0007;THETA=0.0015;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 149789800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5189;AVGPOST=0.9944;RSQ=0.9922;ERATE=0.0005;THETA=0.0006;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 149789831 . ATTTTC A 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5908;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5730;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5607;AVGPOST=0.9969;RSQ=0.9954;ERATE=0.0005;THETA=0.0007;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 149789912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.922;LDAF=0.0142;AVGPOST=0.9973;RSQ=0.9351;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149789934 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149789973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149789985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.893;LDAF=0.0086;AVGPOST=0.9978;RSQ=0.8899;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149789986 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149790086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149790173 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5861;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149790191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149790349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9323;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149790374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6076;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149790375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5169;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=1129;AN=2184 GT:DS:GL:BD 0.51694137 1 1 149790391 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149790398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7076;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149790446 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9366;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149790478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5608;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0005;THETA=0.0002;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 149790491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9164;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149790515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1946;AVGPOST=0.9980;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 149790546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5614;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0008;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 149790571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8716;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149790634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149790643 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9980;RSQ=0.9488;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149790669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.7001;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149790694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6585;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149790798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1355;AVGPOST=0.9965;RSQ=0.9895;ERATE=0.0003;THETA=0.0022;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 149790831 rs11443788 G GC 103611 PASS INDEL;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.9815;AVGPOST=0.9984;RSQ=0.9648;ERATE=0.0003;THETA=0.0005;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 149790875 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5606;AVGPOST=0.9956;RSQ=0.9921;ERATE=0.0007;THETA=0.0007;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 149790900 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0188;AVGPOST=0.9996;RSQ=0.9914;ERATE=0.0003;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149790956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4710;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149790978 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0188;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0004;THETA=0.0027;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149790993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5865;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149791073 . T TTGCCAAC 1676 PASS INDEL;BAVGPOST=0.997;BRSQ=0.800;LDAF=0.0082;AVGPOST=0.9966;RSQ=0.8300;ERATE=0.0006;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149791111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8668;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149791170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8257;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149791265 . A AT 345 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8851;ERATE=0.0005;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149791363 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0317;AVGPOST=0.9987;RSQ=0.9814;ERATE=0.0004;THETA=0.0043;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149791485 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9660;AVGPOST=0.9989;RSQ=0.9892;ERATE=0.0003;THETA=0.0004;AC=2110;AN=2184 GT:DS:GL:BD 0.96611720 1 1 149791582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149791585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8227;ERATE=0.0004;THETA=0.0047;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149791705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9994;RSQ=0.9883;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149791742 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5527;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149791766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149791782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6399;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149791933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7509;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149792062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149792096 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792218 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0109;AVGPOST=0.9972;RSQ=0.9113;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149792233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.805;LDAF=0.0152;AVGPOST=0.9938;RSQ=0.8374;ERATE=0.0003;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149792255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0140;AVGPOST=0.9979;RSQ=0.9428;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149792297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792298 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0003;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149792352 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5472;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0003;THETA=0.0011;AC=1196;AN=2184 GT:DS:GL:BD 0.54761904 1 1 149792463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.410;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5015;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149792474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4728;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149792486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9578;AVGPOST=0.9993;RSQ=0.9932;ERATE=0.0004;THETA=0.0005;AC=2092;AN=2184 GT:DS:GL:BD 0.95787543 1 1 149792542 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0519;AVGPOST=0.9989;RSQ=0.9914;ERATE=0.0003;THETA=0.0012;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 149792587 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1809;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 149792654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4956;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7019;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149792696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.934;LDAF=0.9517;AVGPOST=0.9851;RSQ=0.8918;ERATE=0.0032;THETA=0.0004;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 149792698 . AG A 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4165;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149792737 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4401;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4591;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149792836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0186;AVGPOST=0.9992;RSQ=0.9824;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149792996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.757;LDAF=0.0076;AVGPOST=0.9972;RSQ=0.8673;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149793062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8261;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149793064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1806;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 149793206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149793303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149793368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1820;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0004;THETA=0.0003;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 149793392 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.766;LDAF=0.9225;AVGPOST=0.9443;RSQ=0.7291;ERATE=0.0150;THETA=0.0008;AC=2051;AN=2184 GT:DS:GL:BD 0.93910259 1 1 149793470 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1804;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0005;THETA=0.0005;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 149793615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1805;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0004;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 149793808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0498;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 149793819 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0093;AVGPOST=0.9986;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149793840 . ATG A 47 PASS INDEL;BAVGPOST=0.988;BRSQ=0.505;LDAF=0.0206;AVGPOST=0.9788;RSQ=0.5905;ERATE=0.0099;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149793904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5724;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149794020 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1819;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 149794026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1998;AVGPOST=0.9964;RSQ=0.9927;ERATE=0.0003;THETA=0.0003;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 149794054 . GTA G 251 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149794059 . TTG T 31931 PASS INDEL;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1790;AVGPOST=0.9979;RSQ=0.9944;ERATE=0.0010;THETA=0.0004;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 149794190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149794216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149794218 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149794244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9582;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0006;AC=2093;AN=2184 GT:DS:GL:BD 0.95833331 1 1 149794254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8570;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149794401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4994;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149794440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7796;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149794503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7643;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149794531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149794617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149794968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7417;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149795009 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4837;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149795088 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9705;AVGPOST=0.9975;RSQ=0.9678;ERATE=0.0008;THETA=0.0006;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 149795096 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149795219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.5026;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149795232 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9755;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149795299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2074;AVGPOST=0.9944;RSQ=0.9873;ERATE=0.0005;THETA=0.0005;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 149795535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5195;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149795548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7708;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149795645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149795758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149795797 rs112148441 CAAAT C 231 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149796016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7364;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149796124 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7676;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149796274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0201;AVGPOST=0.9976;RSQ=0.9577;ERATE=0.0004;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149796291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0196;AVGPOST=0.9987;RSQ=0.9745;ERATE=0.0003;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149796300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5599;AVGPOST=0.9953;RSQ=0.9936;ERATE=0.0005;THETA=0.0004;AC=1224;AN=2184 GT:DS:GL:BD 0.56043959 1 1 149796302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0383;AVGPOST=0.9989;RSQ=0.9853;ERATE=0.0005;THETA=0.0021;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 149796519 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0141;AVGPOST=0.9974;RSQ=0.9265;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149796587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0203;AVGPOST=0.9989;RSQ=0.9802;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149796955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2544;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 149796962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149797065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0045;AVGPOST=0.9977;RSQ=0.7840;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149797153 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149797237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.7002;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149797301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9000;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149797378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5899;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149797493 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8673;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5594;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 149797611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6231;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5630;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0711;AVGPOST=0.9979;RSQ=0.9882;ERATE=0.0004;THETA=0.0006;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 149797749 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.802;LDAF=0.0130;AVGPOST=0.9947;RSQ=0.8632;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149797765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4406;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149797823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149797913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149798057 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149798144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149798272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149798317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149798330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149798416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4843;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1057;AN=2184 GT:DS:GL:BD 0.48397437 0 1 149798518 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7948;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149798566 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149798590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149798669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0074;AVGPOST=0.9987;RSQ=0.9251;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149798851 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0287;AVGPOST=0.9991;RSQ=0.9879;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149798946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149798991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.8020;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149798993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0494;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149799107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9993;RSQ=0.9308;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149799242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0173;AVGPOST=0.9992;RSQ=0.9817;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149799314 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149799394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149799543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8473;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149799559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149799701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149799853 . A AC 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149799951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7354;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149800041 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5177;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149800126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149800138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5546;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149800162 rs72567511 T TAA 36836 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3031;AVGPOST=0.9967;RSQ=0.9938;ERATE=0.0007;THETA=0.0004;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 149800163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0149;AVGPOST=0.9993;RSQ=0.9816;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149800164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3032;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0007;THETA=0.0005;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 149800307 . G GT 140 PASS INDEL;BAVGPOST=0.986;BRSQ=0.485;LDAF=0.0354;AVGPOST=0.9559;RSQ=0.4946;ERATE=0.0071;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149800343 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9689;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149800344 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4291;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149800365 rs72473571 T TA 247 PASS INDEL;BAVGPOST=0.995;BRSQ=0.682;LDAF=0.0051;AVGPOST=0.9966;RSQ=0.7207;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149800467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149800491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149800502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8729;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149800515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149800685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0030;AVGPOST=0.9972;RSQ=0.6202;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149800777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9078;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149800947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0028;AVGPOST=0.9975;RSQ=0.6379;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149800983 . TCTTC T 2266 PASS INDEL;BAVGPOST=0.910;BRSQ=0.730;LDAF=0.1597;AVGPOST=0.9399;RSQ=0.8656;ERATE=0.0009;THETA=0.0005;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 149801159 . TTCCTTCCC T 2189 PASS INDEL;BAVGPOST=0.890;BRSQ=0.680;LDAF=0.2131;AVGPOST=0.8082;RSQ=0.5669;ERATE=0.0143;THETA=0.0005;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 149801177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.749;LDAF=0.2039;AVGPOST=0.8510;RSQ=0.6814;ERATE=0.0226;THETA=0.0007;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 149801181 . TTCCC T 2014 PASS INDEL;BAVGPOST=0.713;BRSQ=0.534;LDAF=0.3734;AVGPOST=0.8695;RSQ=0.8099;ERATE=0.0013;THETA=0.0006;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 149801181 . TCCCTCC T 8802 PASS INDEL;BAVGPOST=0.618;BRSQ=0.347;LDAF=0.4814;AVGPOST=0.6832;RSQ=0.4794;ERATE=0.0310;THETA=0.0003;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 149801202 rs61221169 CTT C 2835 PASS INDEL;BAVGPOST=0.486;BRSQ=0.110;LDAF=0.5646;AVGPOST=0.6812;RSQ=0.4252;ERATE=0.0229;THETA=0.0003;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 149801209 rs66608515 T TCC 2330 PASS INDEL;BAVGPOST=0.551;BRSQ=0.203;LDAF=0.5249;AVGPOST=0.6693;RSQ=0.4341;ERATE=0.0195;THETA=0.0003;AC=1207;AN=2184 GT:DS:GL:BD 0.55265570 1 1 149801210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.791;LDAF=0.2938;AVGPOST=0.8448;RSQ=0.7027;ERATE=0.0344;THETA=0.0003;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 149801265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4043;ERATE=0.0005;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149801383 . AT A 548 PASS INDEL;BAVGPOST=0.995;BRSQ=0.801;LDAF=0.0136;AVGPOST=0.9934;RSQ=0.7996;ERATE=0.0008;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149801443 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.7411;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149801541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.751;LDAF=0.0135;AVGPOST=0.9947;RSQ=0.8360;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149801549 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7542;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149801647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0120;AVGPOST=0.9967;RSQ=0.9011;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149801760 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7153;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149801769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1283;AVGPOST=0.9985;RSQ=0.9939;ERATE=0.0004;THETA=0.0007;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 149801796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0051;AVGPOST=0.9974;RSQ=0.7896;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149801870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6439;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149801877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7190;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149801921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9744;ERATE=0.0003;THETA=0.0035;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149801923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0174;AVGPOST=0.9993;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149801960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3022;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 149802134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8567;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149802175 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7062;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149802218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9300;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149802220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0256;AVGPOST=0.9989;RSQ=0.9804;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149802277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6493;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149802298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149802494 . TC T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149802526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8125;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149802567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9996;RSQ=0.9808;ERATE=0.0003;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149802594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7995;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149802611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9085;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149802698 . T TG 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7315;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149802788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8969;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149802948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149802991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149803072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7623;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149803124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149803209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149803345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0457;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 149803389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8170;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149803458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5313;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149803490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149803644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149803655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9890;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149803790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1142;AVGPOST=0.9971;RSQ=0.9898;ERATE=0.0003;THETA=0.0006;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 149803860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0401;AVGPOST=0.9986;RSQ=0.9832;ERATE=0.0004;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 149803908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149803967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0249;AVGPOST=0.9995;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149804154 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149804159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5877;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149804239 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3013;AVGPOST=0.9966;RSQ=0.9934;ERATE=0.0005;THETA=0.0005;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 149804248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6413;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149804253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0040;AVGPOST=0.9972;RSQ=0.7323;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149804455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8763;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149804512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6564;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149804880 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5954;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149804983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9730;AVGPOST=0.9989;RSQ=0.9809;ERATE=0.0004;THETA=0.0004;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 149805034 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9811;AVGPOST=0.9988;RSQ=0.9756;ERATE=0.0004;THETA=0.0006;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 149805036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9562;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149805051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3668;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149805101 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149805265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9747;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149805298 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3065;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 149805302 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149805483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9511;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149805532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.650;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6981;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149805645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.634;LDAF=0.0040;AVGPOST=0.9950;RSQ=0.4850;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149805683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1504;AVGPOST=0.9947;RSQ=0.9831;ERATE=0.0007;THETA=0.0008;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 149805694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.3176;AVGPOST=0.9882;RSQ=0.9802;ERATE=0.0015;THETA=0.0003;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 149805697 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0039;AVGPOST=0.9987;RSQ=0.8596;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149805718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.676;LDAF=0.0234;AVGPOST=0.9842;RSQ=0.7583;ERATE=0.0006;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149805779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.413;LDAF=0.0154;AVGPOST=0.9843;RSQ=0.6050;ERATE=0.0011;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149805783 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.870;LDAF=0.1515;AVGPOST=0.9903;RSQ=0.9688;ERATE=0.0006;THETA=0.0045;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 149805839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.732;LDAF=0.0181;AVGPOST=0.9846;RSQ=0.6631;ERATE=0.0013;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149805854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.759;LDAF=0.2350;AVGPOST=0.9556;RSQ=0.9117;ERATE=0.0008;THETA=0.0032;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 149805900 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.757;LDAF=0.2423;AVGPOST=0.9680;RSQ=0.9351;ERATE=0.0005;THETA=0.0013;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 149805905 rs67558793 C CA 204 PASS INDEL;BAVGPOST=0.587;BRSQ=0.236;LDAF=0.6048;AVGPOST=0.7708;RSQ=0.6178;ERATE=0.0098;THETA=0.0003;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 149805921 rs59142483 AAAG A 15394 PASS INDEL;BAVGPOST=0.850;BRSQ=0.372;LDAF=0.7877;AVGPOST=0.7708;RSQ=0.4002;ERATE=0.0600;THETA=0.0027;AC=1874;AN=2184 GT:DS:GL:BD 0.85805863 1 1 149805947 . GCACCATC G 837 PASS INDEL;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9255;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149806026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8958;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149806140 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0179;AVGPOST=0.9953;RSQ=0.8940;ERATE=0.0004;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149806158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8755;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149806159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4606;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0005;THETA=0.0004;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 149806269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9829;ERATE=0.0002;THETA=0.0015;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149806284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8371;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149806319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0002;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149806357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0498;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149806451 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5968;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806521 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=0.9982;RSQ=0.9040;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149806652 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149806668 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0063;AVGPOST=0.9988;RSQ=0.9277;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149806779 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7246;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806783 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9996;RSQ=0.9775;ERATE=0.0002;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149806798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9269;ERATE=0.0006;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149806815 . C CT 45289 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9996;RSQ=0.0496;ERATE=0.0003;THETA=0.0011;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 149806865 rs77209792 T TTA 1162 PASS INDEL;BAVGPOST=0.701;BRSQ=0.334;LDAF=0.3188;AVGPOST=0.6827;RSQ=0.4191;ERATE=0.0923;THETA=0.0002;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 149806868 rs34132036 C CA 89002 PASS INDEL;BAVGPOST=0.998;BRSQ=0.602;LDAF=0.9945;AVGPOST=0.9941;RSQ=0.5939;ERATE=0.0006;THETA=0.0003;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 149806894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149806908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9583;ERATE=0.0003;THETA=0.0045;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149806927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.1508;AVGPOST=0.9982;RSQ=0.9944;ERATE=0.0005;THETA=0.0005;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 149806943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9291;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149806954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149807082 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149807100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2655;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0005;THETA=0.0002;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 149807268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8392;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149807288 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9859;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149807347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5520;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149807467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9110;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149807751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6544;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149807772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3035;AVGPOST=0.9966;RSQ=0.9938;ERATE=0.0009;THETA=0.0005;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 149807793 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7520;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149807827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2594;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0004;THETA=0.0008;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 149807839 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9896;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149807938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5706;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149808041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8989;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149808061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9295;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149808130 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7515;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=1642;AN=2184 GT:DS:GL:BD 0.75183153 1 1 149808156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1494;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0005;THETA=0.0001;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 149808216 . CA C 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0029;AVGPOST=0.9951;RSQ=0.4680;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149808440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9466;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149808490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1524;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 149808504 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149808614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3025;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 149808715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149808730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5055;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149808761 rs34946828 GA G 16866 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2074;AVGPOST=0.9963;RSQ=0.9913;ERATE=0.0007;THETA=0.0005;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 149808775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1529;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 149808780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7621;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149808797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149808810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149808812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6913;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149808898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149808939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8208;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149809045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5636;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149809137 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7801;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149809143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4647;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=1016;AN=2184 GT:DS:GL:BD 0.46520147 0 1 149809212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5465;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149809258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149809309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0127;AVGPOST=0.9991;RSQ=0.9685;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149809397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9403;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149809534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7971;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149809552 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9041;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149809563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8322;ERATE=0.0002;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149809592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8087;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149809612 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3966;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149809623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0060;AVGPOST=0.9967;RSQ=0.8102;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149809796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0017;AVGPOST=0.9973;RSQ=0.3649;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149809811 . T TA 294 PASS INDEL;BAVGPOST=0.978;BRSQ=0.241;LDAF=0.0588;AVGPOST=0.8979;RSQ=0.2318;ERATE=0.0029;THETA=0.0040;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149811576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0116;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149812392 . C CT 1784 PASS INDEL;BAVGPOST=0.975;BRSQ=0.763;LDAF=0.0629;AVGPOST=0.9934;RSQ=0.9504;ERATE=0.0008;THETA=0.0010;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149812981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0644;AVGPOST=0.9967;RSQ=0.9758;ERATE=0.0006;THETA=0.0092;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149813018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.928;LDAF=0.0643;AVGPOST=0.9963;RSQ=0.9747;ERATE=0.0005;THETA=0.0058;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 149813142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0004;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149813179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9479;ERATE=0.0004;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149813184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9213;ERATE=0.0004;THETA=0.0021;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149813458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.709;LDAF=0.0046;AVGPOST=0.9947;RSQ=0.5233;ERATE=0.0004;THETA=0.0067;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149813568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0063;AVGPOST=0.9991;RSQ=0.9344;ERATE=0.0004;THETA=0.0017;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149814051 . CTCCAAGA C 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3517;ERATE=0.0006;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149814148 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.930;LDAF=0.0678;AVGPOST=0.9917;RSQ=0.9470;ERATE=0.0012;THETA=0.0051;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149814173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.893;LDAF=0.0691;AVGPOST=0.9896;RSQ=0.9332;ERATE=0.0021;THETA=0.0126;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 149814363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.888;LDAF=0.6844;AVGPOST=0.9075;RSQ=0.8413;ERATE=0.0089;THETA=0.0009;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 149814424 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9523;ERATE=0.0004;THETA=0.0092;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149814507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5164;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149814547 rs10627008 C CAGTTT 5584 PASS INDEL;BAVGPOST=0.604;BRSQ=0.225;LDAF=0.3370;AVGPOST=0.6613;RSQ=0.3939;ERATE=0.0216;THETA=0.0045;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 149814730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0082;AVGPOST=0.9968;RSQ=0.8643;ERATE=0.0005;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149814755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6084;ERATE=0.0005;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149814873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0003;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149814896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.945;LDAF=0.0541;AVGPOST=0.9911;RSQ=0.9376;ERATE=0.0011;THETA=0.0035;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 149814996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149815152 rs5781806 C CAG 1808 PASS INDEL;BAVGPOST=0.980;BRSQ=0.765;LDAF=0.0495;AVGPOST=0.9820;RSQ=0.8570;ERATE=0.0023;THETA=0.0056;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 149815181 rs72144022 CAT C 7172 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0345;AVGPOST=0.9966;RSQ=0.9672;ERATE=0.0003;THETA=0.0011;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149815205 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.903;LDAF=0.0890;AVGPOST=0.9681;RSQ=0.8378;ERATE=0.0128;THETA=0.0068;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 149815247 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8164;ERATE=0.0004;THETA=0.0034;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149815373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.835;LDAF=0.0541;AVGPOST=0.9853;RSQ=0.8941;ERATE=0.0009;THETA=0.0092;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 149816163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.860;LDAF=0.0570;AVGPOST=0.9922;RSQ=0.9435;ERATE=0.0007;THETA=0.0017;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 149816209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.912;LDAF=0.0578;AVGPOST=0.9935;RSQ=0.9523;ERATE=0.0006;THETA=0.0174;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 149816234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.925;LDAF=0.1748;AVGPOST=0.9553;RSQ=0.9000;ERATE=0.0010;THETA=0.0018;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 149816236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8346;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149816280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.950;LDAF=0.0767;AVGPOST=0.9880;RSQ=0.9361;ERATE=0.0009;THETA=0.0008;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 149816315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.953;LDAF=0.4140;AVGPOST=0.9782;RSQ=0.9765;ERATE=0.0005;THETA=0.0005;AC=910;AN=2184 GT:DS:GL:BD 0.41666666 0 1 149816325 . A ACC 18865 PASS INDEL;BAVGPOST=0.965;BRSQ=0.952;LDAF=0.4136;AVGPOST=0.9741;RSQ=0.9705;ERATE=0.0010;THETA=0.0004;AC=911;AN=2184 GT:DS:GL:BD 0.41712454 0 1 149816341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.953;LDAF=0.4152;AVGPOST=0.9786;RSQ=0.9765;ERATE=0.0006;THETA=0.0007;AC=914;AN=2184 GT:DS:GL:BD 0.41849816 0 1 149816342 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.997;LDAF=0.4310;AVGPOST=0.9976;RSQ=0.9969;ERATE=0.0008;THETA=0.0004;AC=942;AN=2184 GT:DS:GL:BD 0.43131867 0 1 149816445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0052;AVGPOST=0.9994;RSQ=0.9464;ERATE=0.0004;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149816481 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149816489 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0194;AVGPOST=0.9967;RSQ=0.9288;ERATE=0.0004;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149816493 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5627;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149816510 . T TC 16206 PASS INDEL;BAVGPOST=0.951;BRSQ=0.923;LDAF=0.5242;AVGPOST=0.9183;RSQ=0.8976;ERATE=0.0187;THETA=0.0004;AC=1184;AN=2184 GT:DS:GL:BD 0.54212457 1 1 149816569 rs66712308 C CT 67528 PASS INDEL;BAVGPOST=0.985;BRSQ=0.979;LDAF=0.5792;AVGPOST=0.9923;RSQ=0.9905;ERATE=0.0006;THETA=0.0005;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 149816570 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.483;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149816642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5832;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0005;THETA=0.0015;AC=1271;AN=2184 GT:DS:GL:BD 0.58195972 1 1 149816696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149816732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5835;AVGPOST=0.9978;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=1273;AN=2184 GT:DS:GL:BD 0.58287543 1 1 149816752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5825;AVGPOST=0.9986;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 149816779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5825;AVGPOST=0.9989;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 149816791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0034;AVGPOST=0.9970;RSQ=0.6450;ERATE=0.0011;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149816796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5822;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0005;THETA=0.0035;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 149816847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149816952 . CCT C 1203 PASS INDEL;BAVGPOST=0.995;BRSQ=0.781;LDAF=0.0114;AVGPOST=0.9968;RSQ=0.8838;ERATE=0.0004;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149816983 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9275;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149817013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9235;AVGPOST=0.9983;RSQ=0.9921;ERATE=0.0004;THETA=0.0006;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 149817157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2503;AVGPOST=0.9963;RSQ=0.9922;ERATE=0.0005;THETA=0.0002;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 149817186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1541;AVGPOST=0.9986;RSQ=0.9960;ERATE=0.0004;THETA=0.0027;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 149817226 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5159;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0044;AVGPOST=0.9961;RSQ=0.6364;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149817305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7457;AVGPOST=0.9935;RSQ=0.9882;ERATE=0.0005;THETA=0.0016;AC=1634;AN=2184 GT:DS:GL:BD 0.74816847 1 1 149817322 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2440;AVGPOST=0.9970;RSQ=0.9938;ERATE=0.0005;THETA=0.0022;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 149817331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9118;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149817344 rs59868132 AT A 10460 PASS INDEL;BAVGPOST=0.966;BRSQ=0.924;LDAF=0.2616;AVGPOST=0.9335;RSQ=0.8785;ERATE=0.0126;THETA=0.0009;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 149817403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.612;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6687;ERATE=0.0005;THETA=0.0041;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149817430 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.2302;AVGPOST=0.9905;RSQ=0.9795;ERATE=0.0012;THETA=0.0006;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 149817583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8442;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149817625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1514;AVGPOST=0.9971;RSQ=0.9917;ERATE=0.0006;THETA=0.0011;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 149817636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6157;ERATE=0.0005;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149817683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.6820;AVGPOST=0.9851;RSQ=0.9766;ERATE=0.0033;THETA=0.0069;AC=1499;AN=2184 GT:DS:GL:BD 0.68635529 1 1 149817779 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0683;AVGPOST=0.9984;RSQ=0.9902;ERATE=0.0004;THETA=0.0056;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 149817784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5849;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149817836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4679;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817872 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5515;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817895 . TCCTC T 250 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7129;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149817918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.911;LDAF=0.0399;AVGPOST=0.9936;RSQ=0.9383;ERATE=0.0003;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 149817968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9996;RSQ=0.8912;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149817982 . CCTG C 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5134;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149817989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8741;ERATE=0.0004;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149818062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.0920;AVGPOST=0.9979;RSQ=0.9920;ERATE=0.0004;THETA=0.0004;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 149818216 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4859;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149818253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0036;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149818422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0147;AVGPOST=0.9977;RSQ=0.9351;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149818497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9991;RSQ=0.9661;ERATE=0.0003;THETA=0.0018;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149818500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.786;LDAF=0.2493;AVGPOST=0.8550;RSQ=0.7249;ERATE=0.0122;THETA=0.0006;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 149818578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.836;LDAF=0.6569;AVGPOST=0.8689;RSQ=0.7990;ERATE=0.0166;THETA=0.0016;AC=1465;AN=2184 GT:DS:GL:BD 0.67078757 1 1 149818593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.782;LDAF=0.1234;AVGPOST=0.9610;RSQ=0.8797;ERATE=0.0011;THETA=0.0014;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 149818598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.953;LDAF=0.6342;AVGPOST=0.9636;RSQ=0.9475;ERATE=0.0017;THETA=0.0003;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 149818653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.853;LDAF=0.0676;AVGPOST=0.9703;RSQ=0.8560;ERATE=0.0018;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149818699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.920;BRSQ=0.797;LDAF=0.1973;AVGPOST=0.9570;RSQ=0.9138;ERATE=0.0007;THETA=0.0021;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 149818712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.758;LDAF=0.8618;AVGPOST=0.9325;RSQ=0.8117;ERATE=0.0047;THETA=0.0069;AC=1915;AN=2184 GT:DS:GL:BD 0.87683153 1 1 149818715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.926;LDAF=0.2170;AVGPOST=0.9783;RSQ=0.9603;ERATE=0.0008;THETA=0.0006;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 149818838 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.928;LDAF=0.2204;AVGPOST=0.9783;RSQ=0.9612;ERATE=0.0009;THETA=0.0057;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 149818842 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7062;ERATE=0.0003;THETA=0.0039;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149818904 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9301;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149818926 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2741;AVGPOST=0.9979;RSQ=0.9955;ERATE=0.0004;THETA=0.0015;AC=598;AN=2184 GT:DS:GL:BD 0.27380952 0 1 149819159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7697;ERATE=0.0015;THETA=0.0081;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149819174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149819393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1405;AVGPOST=0.9981;RSQ=0.9942;ERATE=0.0003;THETA=0.0006;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 149819410 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149819476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9678;ERATE=0.0004;THETA=0.0029;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149819480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149819531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.980;LDAF=0.4838;AVGPOST=0.9877;RSQ=0.9853;ERATE=0.0007;THETA=0.0005;AC=1051;AN=2184 GT:DS:GL:BD 0.48122710 0 1 149819557 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.683;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.7896;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149819571 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0079;AVGPOST=0.9994;RSQ=0.9666;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149819610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4066;AVGPOST=0.9729;RSQ=0.9633;ERATE=0.0051;THETA=0.0002;AC=899;AN=2184 GT:DS:GL:BD 0.41163003 0 1 149819688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4862;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149819708 . C CA 6603 PASS INDEL;BAVGPOST=0.957;BRSQ=0.839;LDAF=0.1576;AVGPOST=0.9255;RSQ=0.7964;ERATE=0.0080;THETA=0.0010;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 149819851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.939;LDAF=0.5671;AVGPOST=0.9642;RSQ=0.9501;ERATE=0.0037;THETA=0.0003;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 149819878 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.622;LDAF=0.0053;AVGPOST=0.9947;RSQ=0.5982;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149819899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.542;LDAF=0.0302;AVGPOST=0.9775;RSQ=0.7158;ERATE=0.0008;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149820014 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.544;LDAF=0.0164;AVGPOST=0.9929;RSQ=0.8204;ERATE=0.0007;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 149820078 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0180;AVGPOST=0.9977;RSQ=0.9417;ERATE=0.0006;THETA=0.0025;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149820104 rs71174473 C CAAA 5723 PASS INDEL;BAVGPOST=0.683;BRSQ=0.348;LDAF=0.6754;AVGPOST=0.7197;RSQ=0.4879;ERATE=0.0233;THETA=0.0004;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 149820141 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.936;LDAF=0.1268;AVGPOST=0.9936;RSQ=0.9785;ERATE=0.0006;THETA=0.0017;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 149820168 . CAG C 718 PASS INDEL;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0054;AVGPOST=0.9971;RSQ=0.7851;ERATE=0.0008;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149820175 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9370;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149820229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4484;AVGPOST=0.9979;RSQ=0.9974;ERATE=0.0005;THETA=0.0005;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 149820311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6142;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149820392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149820416 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6858;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149820496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149820597 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149820615 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9542;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149820711 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4626;AVGPOST=0.9990;RSQ=0.9987;ERATE=0.0006;THETA=0.0004;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 149820817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149820858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5763;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149820863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9835;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149821013 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1458;AVGPOST=0.9990;RSQ=0.9967;ERATE=0.0004;THETA=0.0004;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 149821261 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9139;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149821402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.491;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149821411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6402;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149821452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4106;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0004;THETA=0.0006;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 149821491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149821547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9575;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149821559 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9550;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0003;THETA=0.0009;AC=2086;AN=2184 GT:DS:GL:BD 0.95512819 1 1 149821569 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149821656 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0495;AVGPOST=0.9998;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149821840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.8799;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149821888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0501;AVGPOST=0.9991;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 149821914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9527;AVGPOST=0.9972;RSQ=0.9803;ERATE=0.0005;THETA=0.0003;AC=2080;AN=2184 GT:DS:GL:BD 0.95238096 1 1 149821967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6272;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149821983 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0180;AVGPOST=0.9992;RSQ=0.9830;ERATE=0.0003;THETA=0.0019;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149822035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0048;AVGPOST=0.9968;RSQ=0.7361;ERATE=0.0016;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149822051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9767;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149822142 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0006;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149822179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8953;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1955;AN=2184 GT:DS:GL:BD 0.89514655 1 1 149822220 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6550;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149822254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149822266 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.9898;AVGPOST=0.9993;RSQ=0.9675;ERATE=0.0004;THETA=0.0004;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 149822316 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5730;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149822388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149822695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6900;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149822696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0042;AVGPOST=0.9966;RSQ=0.6840;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149822838 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0190;AVGPOST=0.9994;RSQ=0.9853;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149822854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.960;LDAF=0.5492;AVGPOST=0.9556;RSQ=0.9297;ERATE=0.0124;THETA=0.0004;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 149822862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5296;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149822919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5069;ERATE=0.0011;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149823011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0032;AVGPOST=0.9970;RSQ=0.6050;ERATE=0.0008;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149823046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149823086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7166;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149823138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9146;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=1997;AN=2184 GT:DS:GL:BD 0.91437727 1 1 149823236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149823253 . TTGA T 8610 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0497;AVGPOST=0.9990;RSQ=0.9909;ERATE=0.0005;THETA=0.0008;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149823344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6714;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149823367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6839;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149823450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3904;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 149823484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4327;AVGPOST=0.9975;RSQ=0.9960;ERATE=0.0009;THETA=0.0004;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 149823594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149823706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4385;AVGPOST=0.9950;RSQ=0.9923;ERATE=0.0007;THETA=0.0003;AC=955;AN=2184 GT:DS:GL:BD 0.43727106 0 1 149823817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8096;ERATE=0.0004;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149823869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149823959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0493;AVGPOST=0.9994;RSQ=0.9944;ERATE=0.0004;THETA=0.0009;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149824126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.2270;ERATE=0.0005;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149824179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0499;AVGPOST=0.9984;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149824214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9429;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149824235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8714;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149824321 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1311;AVGPOST=0.9973;RSQ=0.9907;ERATE=0.0005;THETA=0.0024;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 149824355 . AT A 755 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9992;RSQ=0.9395;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149824425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149824436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149824568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149824600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7171;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149824718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9654;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149824853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0193;AVGPOST=0.9976;RSQ=0.9491;ERATE=0.0011;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149825064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149825148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6388;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149825159 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149825246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9341;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149825318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7783;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149825396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149825418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0490;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 149825460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9167;ERATE=0.0003;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149825606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8080;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149825746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.9919;AVGPOST=0.9982;RSQ=0.9022;ERATE=0.0004;THETA=0.0004;AC=2168;AN=2184 GT:DS:GL:BD 0.99267399 1 1 149825763 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.955;LDAF=0.6248;AVGPOST=0.9697;RSQ=0.9499;ERATE=0.0044;THETA=0.0004;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 149825873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.717;LDAF=0.9869;AVGPOST=0.9897;RSQ=0.6833;ERATE=0.0014;THETA=0.0004;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 149825908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.322;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5366;ERATE=0.0008;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149825966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9108;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149825976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0522;AVGPOST=0.9981;RSQ=0.9831;ERATE=0.0006;THETA=0.0003;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 149825977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.963;LDAF=0.1264;AVGPOST=0.9970;RSQ=0.9898;ERATE=0.0007;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 149826126 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0366;AVGPOST=0.9964;RSQ=0.9659;ERATE=0.0006;THETA=0.0029;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 149826229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9397;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149826236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149826371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9107;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149826539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8338;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149826595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8674;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149826654 . T TCTCTAC 581 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.3308;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149826688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5760;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 149826699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9650;ERATE=0.0003;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149826918 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0274;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149826944 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149827000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5763;AVGPOST=0.9974;RSQ=0.9959;ERATE=0.0005;THETA=0.0007;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 149827006 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6393;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149827096 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149827152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149827166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0228;AVGPOST=0.9981;RSQ=0.9706;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149827358 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149827368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149827460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.744;LDAF=0.0585;AVGPOST=0.9562;RSQ=0.7007;ERATE=0.0132;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 149827505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6692;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149827506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.5734;AVGPOST=0.9924;RSQ=0.9878;ERATE=0.0014;THETA=0.0003;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 149827577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5762;AVGPOST=0.9945;RSQ=0.9906;ERATE=0.0009;THETA=0.0002;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 149827670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0149;AVGPOST=0.9993;RSQ=0.9842;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149827767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149827795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149827877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6821;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149827900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6705;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149828294 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9279;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149828387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9905;AVGPOST=0.9994;RSQ=0.9698;ERATE=0.0004;THETA=0.0004;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 149828394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6968;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149828402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149828488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7292;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149828489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.8030;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149828491 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0275;AVGPOST=0.9991;RSQ=0.9868;ERATE=0.0004;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149828590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149828821 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0277;AVGPOST=0.9995;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149829025 . T TGCCATA 133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4504;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149829041 . T TG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149829046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0276;AVGPOST=0.9996;RSQ=0.9943;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149829110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0187;AVGPOST=0.9992;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149829111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7410;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149829218 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9657;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149829335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0085;AVGPOST=0.9975;RSQ=0.8876;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149829341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4241;AVGPOST=0.9950;RSQ=0.9913;ERATE=0.0010;THETA=0.0003;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 149829390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0135;AVGPOST=0.9961;RSQ=0.8995;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149829417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3964;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 149829584 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149829592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9984;RSQ=0.9611;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149829785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0050;AVGPOST=0.9963;RSQ=0.7442;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149829940 rs36209316 AAGTCAGGTATTTAAAGTCCTC A 41617 PASS INDEL;BAVGPOST=0.892;BRSQ=0.805;LDAF=0.4008;AVGPOST=0.8423;RSQ=0.7473;ERATE=0.0272;THETA=0.0005;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 149830005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3965;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0004;THETA=0.0003;AC=866;AN=2184 GT:DS:GL:BD 0.39652014 0 1 149830142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6046;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149830320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149830348 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4238;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0007;THETA=0.0003;AC=926;AN=2184 GT:DS:GL:BD 0.42399266 0 1 149830375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149830704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8038;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149830746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149830784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0281;AVGPOST=0.9986;RSQ=0.9854;ERATE=0.0003;THETA=0.0002;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149830792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149830816 . TTAA T 367 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0187;AVGPOST=0.9995;RSQ=0.9894;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149830835 . TAATA T 2944 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0191;AVGPOST=0.9989;RSQ=0.9768;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149830836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0282;AVGPOST=0.9984;RSQ=0.9789;ERATE=0.0003;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149830918 . ACT A 365 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8348;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149831126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0943;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 149831144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0278;AVGPOST=0.9992;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149831218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149831277 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0042;AVGPOST=0.9981;RSQ=0.8072;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149831395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149831632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7008;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149831689 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149831697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0696;AVGPOST=0.9971;RSQ=0.9824;ERATE=0.0003;THETA=0.0014;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 149831837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149831867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.9041;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149831980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6399;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149831995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0111;AVGPOST=0.9978;RSQ=0.9223;ERATE=0.0005;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149832054 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149832055 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0211;AVGPOST=0.9994;RSQ=0.9877;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149832098 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149832311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7747;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149832388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9933;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149832471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149832527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6515;ERATE=0.0008;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149832551 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9097;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149832639 . GA G 198 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9453;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149832693 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9418;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149832706 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149832735 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149832824 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8137;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149832827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2556;AVGPOST=0.9975;RSQ=0.9945;ERATE=0.0004;THETA=0.0010;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 149832869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5764;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149832872 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0094;AVGPOST=0.9981;RSQ=0.9182;ERATE=0.0004;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149832935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6903;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149832939 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0031;AVGPOST=0.9976;RSQ=0.7019;ERATE=0.0007;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149833020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9175;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149833129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6057;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149833188 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2561;AVGPOST=0.9947;RSQ=0.9902;ERATE=0.0011;THETA=0.0026;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 149833290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9299;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149833331 . T TG 1002 PASS INDEL;BAVGPOST=0.978;BRSQ=0.762;LDAF=0.0511;AVGPOST=0.9843;RSQ=0.8679;ERATE=0.0014;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 149833390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149833471 . C CT 1722 PASS INDEL;BAVGPOST=0.959;BRSQ=0.890;LDAF=0.2040;AVGPOST=0.9614;RSQ=0.9125;ERATE=0.0023;THETA=0.0009;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 149833503 . T TA 30 PASS INDEL;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0037;AVGPOST=0.9949;RSQ=0.4671;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149833509 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.918;LDAF=0.0275;AVGPOST=0.9957;RSQ=0.9392;ERATE=0.0006;THETA=0.0007;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149833510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.921;LDAF=0.2085;AVGPOST=0.9748;RSQ=0.9471;ERATE=0.0011;THETA=0.0005;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 149833511 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.902;LDAF=0.0636;AVGPOST=0.9841;RSQ=0.9086;ERATE=0.0007;THETA=0.0012;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 149833512 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0053;AVGPOST=0.9972;RSQ=0.7864;ERATE=0.0009;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149833521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9982;RSQ=0.9387;ERATE=0.0003;THETA=0.0013;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149833584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0272;AVGPOST=0.9985;RSQ=0.9759;ERATE=0.0005;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149833659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2345;AVGPOST=0.9986;RSQ=0.9967;ERATE=0.0004;THETA=0.0009;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 149833756 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149833786 rs3041660 A AATGCC 50531 PASS INDEL;BAVGPOST=0.953;BRSQ=0.912;LDAF=0.2890;AVGPOST=0.9633;RSQ=0.9379;ERATE=0.0057;THETA=0.0006;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 149833828 . T TG 1775 PASS INDEL;BAVGPOST=0.898;BRSQ=0.769;LDAF=0.2261;AVGPOST=0.9068;RSQ=0.8208;ERATE=0.0074;THETA=0.0006;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 149833830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0266;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149833867 . TC T 8028 PASS INDEL;BAVGPOST=0.990;BRSQ=0.942;LDAF=0.0761;AVGPOST=0.9888;RSQ=0.9473;ERATE=0.0004;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149833881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2350;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0005;THETA=0.0007;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 149833944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5722;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149833964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9754;ERATE=0.0003;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149834104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6413;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149834121 . TCA T 198 PASS INDEL;BAVGPOST=0.991;BRSQ=0.786;LDAF=0.0251;AVGPOST=0.9967;RSQ=0.9544;ERATE=0.0003;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149834260 . CAT C 2365 PASS INDEL;BAVGPOST=0.995;BRSQ=0.906;LDAF=0.0253;AVGPOST=0.9971;RSQ=0.9620;ERATE=0.0003;THETA=0.0023;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149834261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9175;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149834262 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7144;ERATE=0.0009;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149834324 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5402;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149834325 . ATTTG A 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149834353 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0050;AVGPOST=0.9977;RSQ=0.8236;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149834366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8939;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149834390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0266;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149834404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7638;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149834544 . TA T 26654 PASS INDEL;BAVGPOST=0.993;BRSQ=0.982;LDAF=0.2328;AVGPOST=0.9960;RSQ=0.9905;ERATE=0.0014;THETA=0.0004;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 149834606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149834860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149834862 . AT A 12143 PASS INDEL;BAVGPOST=0.977;BRSQ=0.968;LDAF=0.2514;AVGPOST=0.9885;RSQ=0.9766;ERATE=0.0013;THETA=0.0008;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 149834994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2344;AVGPOST=0.9972;RSQ=0.9934;ERATE=0.0005;THETA=0.0013;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 149835047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2557;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 149835183 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9993;RSQ=0.9208;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149835208 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8368;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149835226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.9016;ERATE=0.0007;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149835430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835439 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9557;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149835574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6676;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149835596 . G GT 446 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0055;AVGPOST=0.9969;RSQ=0.7732;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149835690 . T TTG 5684 PASS INDEL;BAVGPOST=0.943;BRSQ=0.840;LDAF=0.1984;AVGPOST=0.9480;RSQ=0.8801;ERATE=0.0064;THETA=0.0010;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 149835836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835843 . AG A 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5468;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.864;LDAF=0.0180;AVGPOST=0.9939;RSQ=0.8528;ERATE=0.0006;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149835914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149835986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149836077 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149836181 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2597;AVGPOST=0.9974;RSQ=0.9944;ERATE=0.0005;THETA=0.0003;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 149836203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149836205 . GT G 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149836236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5640;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149836254 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149836335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149836362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3136;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0005;THETA=0.0005;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 149836436 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149836458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9480;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149836559 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149836615 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0170;AVGPOST=0.9987;RSQ=0.9710;ERATE=0.0005;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149836773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5077;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149836830 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.726;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7907;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149836833 rs71567277 T TTTTA 33197 PASS INDEL;BAVGPOST=0.961;BRSQ=0.924;LDAF=0.3850;AVGPOST=0.9666;RSQ=0.9432;ERATE=0.0054;THETA=0.0004;AC=842;AN=2184 GT:DS:GL:BD 0.38553113 0 1 149836837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.0751;AVGPOST=0.9976;RSQ=0.9884;ERATE=0.0008;THETA=0.0002;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 149836876 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.7815;ERATE=0.0005;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149837132 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9840;ERATE=0.0003;THETA=0.0015;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149837301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4518;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 149837437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6380;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149837471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5871;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149837476 . A AT 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149837505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149837519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4520;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 149837560 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0193;AVGPOST=0.9957;RSQ=0.9141;ERATE=0.0005;THETA=0.0026;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149837785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5910;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149837829 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3921;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=856;AN=2184 GT:DS:GL:BD 0.39194140 0 1 149837852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0038;AVGPOST=0.9973;RSQ=0.7438;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149837902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0151;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 149837931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8342;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149837951 . T TA 4847 PASS INDEL;BAVGPOST=0.959;BRSQ=0.860;LDAF=0.1586;AVGPOST=0.9606;RSQ=0.9010;ERATE=0.0009;THETA=0.0007;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 149837993 . TTG T 2395 PASS INDEL;BAVGPOST=0.961;BRSQ=0.869;LDAF=0.1561;AVGPOST=0.9555;RSQ=0.8840;ERATE=0.0009;THETA=0.0006;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 149837997 . T TG 681 PASS INDEL;BAVGPOST=0.989;BRSQ=0.777;LDAF=0.0269;AVGPOST=0.9804;RSQ=0.7025;ERATE=0.0034;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149837998 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149838060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2464;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 149838092 rs35489677 T TAA 1031 PASS INDEL;BAVGPOST=0.992;BRSQ=0.633;LDAF=0.0130;AVGPOST=0.9874;RSQ=0.6273;ERATE=0.0012;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149838156 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0426;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 149838310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0569;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0038;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 149838647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9980;ERATE=0.0015;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149838651 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0011;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149838681 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149838748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149838810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149838870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149838946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149838998 . CAA C 1152 PASS INDEL;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0088;AVGPOST=0.9968;RSQ=0.8374;ERATE=0.0005;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149839015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149839078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149839088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1805;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 149839241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9468;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149839245 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9672;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149839461 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1809;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 149839573 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6449;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 149839582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149839597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149839657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149839687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149839763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149839773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149839871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149839928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0407;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 149840015 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149840075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6426;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0006;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 149840085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149840120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149840122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1787;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 149840154 rs113122415 A AAGC 19744 PASS INDEL;BAVGPOST=0.973;BRSQ=0.918;LDAF=0.1718;AVGPOST=0.9805;RSQ=0.9500;ERATE=0.0032;THETA=0.0003;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 149840247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149840258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149840277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0012;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149840322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6545;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0027;AC=1429;AN=2184 GT:DS:GL:BD 0.65430403 1 1 149840340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6380;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0006;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 149840393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149840454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840457 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1787;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 149840473 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6402;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0004;THETA=0.0010;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 149840541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2844;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0026;THETA=0.0007;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 149840559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840560 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4973;AVGPOST=0.9987;RSQ=0.9983;ERATE=0.0021;THETA=0.0006;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 149840575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1656;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0016;THETA=0.0019;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 149840603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0709;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0008;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 149840653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0092;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840715 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149840771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9901;ERATE=0.0003;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149840814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9468;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149840836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9349;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149840872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.1698;AVGPOST=0.9929;RSQ=0.9806;ERATE=0.0031;THETA=0.0007;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 149840960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0038;AVGPOST=0.9961;RSQ=0.5769;ERATE=0.0007;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149841128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0005;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149841134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0034;AVGPOST=0.9966;RSQ=0.6287;ERATE=0.0003;THETA=0.0053;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149841150 . A AT 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0037;AVGPOST=0.9947;RSQ=0.4566;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149841177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149841184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149841378 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149841505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1626;AVGPOST=0.9985;RSQ=0.9951;ERATE=0.0005;THETA=0.0011;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 149841535 . A AT 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5161;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149841570 . AAT A 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149841579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.777;LDAF=0.1183;AVGPOST=0.9552;RSQ=0.8479;ERATE=0.0007;THETA=0.0006;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 149841697 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0063;AVGPOST=0.9966;RSQ=0.7923;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149841699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.771;LDAF=0.0236;AVGPOST=0.9839;RSQ=0.7416;ERATE=0.0018;THETA=0.0016;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149841704 rs72091137 T TA 2979 PASS INDEL;BAVGPOST=0.739;BRSQ=0.430;LDAF=0.3311;AVGPOST=0.7058;RSQ=0.4348;ERATE=0.0450;THETA=0.0023;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 149841712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3994;AVGPOST=0.9905;RSQ=0.9859;ERATE=0.0005;THETA=0.0020;AC=871;AN=2184 GT:DS:GL:BD 0.39880952 0 1 149841757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1885;AVGPOST=0.9948;RSQ=0.9892;ERATE=0.0006;THETA=0.0002;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 149841782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.646;LDAF=0.0061;AVGPOST=0.9963;RSQ=0.7770;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149841796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1600;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 149841868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0042;AVGPOST=0.9933;RSQ=0.4404;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149841914 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1801;AVGPOST=0.9963;RSQ=0.9903;ERATE=0.0009;THETA=0.0004;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 149841943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1900;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0005;THETA=0.0002;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 149841947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.1880;AVGPOST=0.9964;RSQ=0.9915;ERATE=0.0006;THETA=0.0003;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 149841969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8153;AVGPOST=0.9986;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 149842120 rs113019886 CAT C 4969 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0316;AVGPOST=0.9983;RSQ=0.9761;ERATE=0.0005;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 149842180 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9797;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149842318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1893;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0005;THETA=0.0002;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 149842509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1891;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0004;THETA=0.0011;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 149842562 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1686;AVGPOST=0.9973;RSQ=0.9915;ERATE=0.0011;THETA=0.0002;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 149842620 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149842667 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1319;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0005;THETA=0.0002;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 149842749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.821;LDAF=0.0058;AVGPOST=0.9967;RSQ=0.7766;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149842817 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149842838 . TTCTC T 590 PASS INDEL;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0125;AVGPOST=0.9975;RSQ=0.9253;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149842843 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0030;AVGPOST=0.9960;RSQ=0.4668;ERATE=0.0019;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149842869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1907;AVGPOST=0.9967;RSQ=0.9930;ERATE=0.0005;THETA=0.0002;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 149842895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6910;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149842936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149842963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1884;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 149843028 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9423;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149843062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0131;AVGPOST=0.9988;RSQ=0.9634;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149843238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9098;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149843243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149843262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7915;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0005;THETA=0.0003;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 149843452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1636;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 149843480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7914;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 149843573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9310;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149843658 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149843889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149843917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8548;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149843973 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149844103 . C CT 1249 PASS INDEL;BAVGPOST=0.995;BRSQ=0.853;LDAF=0.0242;AVGPOST=0.9817;RSQ=0.7080;ERATE=0.0036;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149844185 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7711;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149844195 . AT A 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6361;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149844249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149844392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2705;AVGPOST=0.9981;RSQ=0.9963;ERATE=0.0003;THETA=0.0008;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 149844548 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8524;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149844556 . CACAG C 878 PASS INDEL;BAVGPOST=0.981;BRSQ=0.740;LDAF=0.0511;AVGPOST=0.9564;RSQ=0.6699;ERATE=0.0054;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 149844613 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6708;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149844701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.8308;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149844769 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7021;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149844857 . AT A 623 PASS INDEL;BAVGPOST=0.934;BRSQ=0.630;LDAF=0.0770;AVGPOST=0.9480;RSQ=0.7721;ERATE=0.0005;THETA=0.0005;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 149844872 . TC T 14968 PASS INDEL;BAVGPOST=0.995;BRSQ=0.983;LDAF=0.1519;AVGPOST=0.9930;RSQ=0.9822;ERATE=0.0007;THETA=0.0006;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 149844876 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149844964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1643;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 149844968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1861;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 149845004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6432;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149845125 . AG A 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4581;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149845331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.9044;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149845341 . A AG 5942 PASS INDEL;BAVGPOST=0.978;BRSQ=0.934;LDAF=0.1715;AVGPOST=0.9799;RSQ=0.9530;ERATE=0.0027;THETA=0.0004;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 149845361 rs112272977 G GT 27387 PASS INDEL;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1859;AVGPOST=0.9973;RSQ=0.9937;ERATE=0.0004;THETA=0.0002;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 149845363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1912;AVGPOST=0.9959;RSQ=0.9921;ERATE=0.0005;THETA=0.0004;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 149845410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8234;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149845448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149845500 . CT C 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5883;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149845538 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8237;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149845630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.887;LDAF=0.0195;AVGPOST=0.9940;RSQ=0.8888;ERATE=0.0009;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149845666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149845777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149845785 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.1853;AVGPOST=0.9922;RSQ=0.9823;ERATE=0.0005;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 149845876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.916;LDAF=0.7910;AVGPOST=0.9542;RSQ=0.8928;ERATE=0.0059;THETA=0.0002;AC=1752;AN=2184 GT:DS:GL:BD 0.80219781 1 1 149845883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9989;RSQ=0.9612;ERATE=0.0005;THETA=0.0014;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149845944 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0062;AVGPOST=0.9957;RSQ=0.7301;ERATE=0.0005;THETA=0.0062;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149846063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149846204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6547;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149846317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9974;RSQ=0.9249;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149846369 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4770;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5379;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0049;AVGPOST=0.9995;RSQ=0.9675;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149846654 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5844;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149846659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149846740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0050;AVGPOST=0.9993;RSQ=0.9509;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149846778 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9989;RSQ=0.9344;ERATE=0.0005;THETA=0.0070;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149847265 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4544;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149847282 . TA T 164 PASS INDEL;BAVGPOST=0.972;BRSQ=0.652;LDAF=0.0213;AVGPOST=0.9765;RSQ=0.5780;ERATE=0.0023;THETA=0.0039;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149847433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4031;ERATE=0.0006;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149847437 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5110;ERATE=0.0004;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149847453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0004;THETA=0.0059;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149847498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.845;LDAF=0.0104;AVGPOST=0.9951;RSQ=0.7996;ERATE=0.0007;THETA=0.0025;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149847840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0003;THETA=0.0039;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149847852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.2163;AVGPOST=0.9933;RSQ=0.9840;ERATE=0.0005;THETA=0.0007;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 149847923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149847931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0091;AVGPOST=0.9975;RSQ=0.8861;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149847957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.984;LDAF=0.6218;AVGPOST=0.9876;RSQ=0.9819;ERATE=0.0015;THETA=0.0015;AC=1361;AN=2184 GT:DS:GL:BD 0.62316847 1 1 149847987 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8795;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149848063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149848068 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.985;LDAF=0.4795;AVGPOST=0.9885;RSQ=0.9828;ERATE=0.0012;THETA=0.0004;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 149848109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149848127 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5806;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149848329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.887;LDAF=0.5920;AVGPOST=0.9397;RSQ=0.9208;ERATE=0.0044;THETA=0.0009;AC=1322;AN=2184 GT:DS:GL:BD 0.60531133 1 1 149848462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.666;LDAF=0.2005;AVGPOST=0.8815;RSQ=0.7027;ERATE=0.0178;THETA=0.0005;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 149848499 . C CA 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3325;ERATE=0.0007;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149848518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0065;AVGPOST=0.9984;RSQ=0.8999;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149848560 . A AT 9 PASS INDEL;BAVGPOST=0.997;BRSQ=0.753;LDAF=0.0070;AVGPOST=0.9939;RSQ=0.6215;ERATE=0.0038;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149848564 . TAATAAG T 135 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4708;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149848700 . C CT 162 PASS INDEL;BAVGPOST=0.979;BRSQ=0.468;LDAF=0.0302;AVGPOST=0.9582;RSQ=0.4072;ERATE=0.0066;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149848883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6489;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149848908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.979;LDAF=0.2188;AVGPOST=0.9963;RSQ=0.9913;ERATE=0.0007;THETA=0.0010;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 149849054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149849159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7671;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149849239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.557;LDAF=0.0191;AVGPOST=0.9794;RSQ=0.6074;ERATE=0.0027;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 149849288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2138;AVGPOST=0.9978;RSQ=0.9949;ERATE=0.0004;THETA=0.0012;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 149849393 . CT C 953 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9979;RSQ=0.9023;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149849429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.610;LDAF=0.0239;AVGPOST=0.9734;RSQ=0.5859;ERATE=0.0043;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149849458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9118;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149849503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.844;LDAF=0.2006;AVGPOST=0.9580;RSQ=0.9075;ERATE=0.0020;THETA=0.0004;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 149849533 rs58683643 C CA 2627 PASS INDEL;BAVGPOST=0.832;BRSQ=0.553;LDAF=0.2661;AVGPOST=0.7740;RSQ=0.5239;ERATE=0.0262;THETA=0.0005;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 149849538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.921;LDAF=0.1925;AVGPOST=0.9794;RSQ=0.9566;ERATE=0.0006;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 149849584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.921;LDAF=0.1931;AVGPOST=0.9789;RSQ=0.9553;ERATE=0.0004;THETA=0.0006;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 149849586 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.6114;AVGPOST=0.9879;RSQ=0.9831;ERATE=0.0007;THETA=0.0002;AC=1338;AN=2184 GT:DS:GL:BD 0.61263734 1 1 149849609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0063;AVGPOST=0.9988;RSQ=0.9233;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149849618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149849648 . T TA 3977 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0160;AVGPOST=0.9981;RSQ=0.9484;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149849666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.793;LDAF=0.0224;AVGPOST=0.9910;RSQ=0.8272;ERATE=0.0005;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149849935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9616;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149849958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.964;LDAF=0.1947;AVGPOST=0.9894;RSQ=0.9766;ERATE=0.0005;THETA=0.0006;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 149849999 . CA C 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5024;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149850089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0039;AVGPOST=0.9974;RSQ=0.7404;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149850225 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149850250 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7552;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149850433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5011;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149850478 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2215;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 149850497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.987;LDAF=0.3160;AVGPOST=0.9858;RSQ=0.9796;ERATE=0.0033;THETA=0.0007;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 149850503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6375;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149850664 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0044;AVGPOST=0.9948;RSQ=0.5465;ERATE=0.0011;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149850710 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0040;AVGPOST=0.9977;RSQ=0.7526;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149850731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2154;AVGPOST=0.9959;RSQ=0.9913;ERATE=0.0007;THETA=0.0006;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 149850760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0039;AVGPOST=0.9970;RSQ=0.6998;ERATE=0.0014;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149850833 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0058;AVGPOST=0.9986;RSQ=0.8950;ERATE=0.0005;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149850841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9651;ERATE=0.0004;THETA=0.0019;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149850884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149850991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149850992 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9382;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149851014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9413;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149851031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149851035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5363;AVGPOST=0.9933;RSQ=0.9903;ERATE=0.0009;THETA=0.0003;AC=1172;AN=2184 GT:DS:GL:BD 0.53663003 1 1 149851075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9411;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149851108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5815;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149851117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.969;LDAF=0.2280;AVGPOST=0.9765;RSQ=0.9506;ERATE=0.0085;THETA=0.0033;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 149851123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5101;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149851285 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.965;LDAF=0.5842;AVGPOST=0.9686;RSQ=0.9553;ERATE=0.0085;THETA=0.0028;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 149851359 . AT A 108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149851427 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.973;LDAF=0.5422;AVGPOST=0.9781;RSQ=0.9682;ERATE=0.0045;THETA=0.0005;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 149851508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9911;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149851515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.5257;AVGPOST=0.9862;RSQ=0.9797;ERATE=0.0032;THETA=0.0004;AC=1150;AN=2184 GT:DS:GL:BD 0.52655679 1 1 149851540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7387;ERATE=0.0004;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149851542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149851563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9797;ERATE=0.0003;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149851634 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149851670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9728;ERATE=0.0003;THETA=0.0013;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149851688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9616;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149851704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.6815;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149851724 . C CA 378 PASS INDEL;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0170;AVGPOST=0.9914;RSQ=0.8076;ERATE=0.0010;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149851845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.807;LDAF=0.0110;AVGPOST=0.9937;RSQ=0.7884;ERATE=0.0008;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149851846 . G GT 336 PASS INDEL;BAVGPOST=0.996;BRSQ=0.894;LDAF=0.0146;AVGPOST=0.9945;RSQ=0.8532;ERATE=0.0006;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149851849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0236;AVGPOST=0.9977;RSQ=0.9620;ERATE=0.0003;THETA=0.0032;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149851896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.871;LDAF=0.0066;AVGPOST=0.9976;RSQ=0.8452;ERATE=0.0007;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149851897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0758;AVGPOST=0.9975;RSQ=0.9861;ERATE=0.0008;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149851903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9978;RSQ=0.8814;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149852195 . TCTC T 123 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149852374 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9893;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149852383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7770;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149852545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4728;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149852569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8096;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149852696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0029;AVGPOST=0.9972;RSQ=0.6323;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149852750 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2422;AVGPOST=0.9929;RSQ=0.9859;ERATE=0.0006;THETA=0.0010;AC=530;AN=2184 GT:DS:GL:BD 0.24267399 0 1 149852814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0380;AVGPOST=0.9979;RSQ=0.9773;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 149852853 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0028;AVGPOST=0.9960;RSQ=0.4716;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149852856 . CAA C 39 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5537;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149852872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6028;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149853135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4577;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149853248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5719;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853447 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149853527 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7166;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149853547 . TG T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.5434;ERATE=0.0005;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149853555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9411;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149853584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853596 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149853607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.751;LDAF=0.0052;AVGPOST=0.9975;RSQ=0.8228;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149853849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.763;LDAF=0.0114;AVGPOST=0.9944;RSQ=0.8146;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149853852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.951;LDAF=0.6066;AVGPOST=0.9595;RSQ=0.9383;ERATE=0.0070;THETA=0.0007;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 149853940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.832;LDAF=0.0110;AVGPOST=0.9960;RSQ=0.8643;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149853953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0060;AVGPOST=0.9952;RSQ=0.6772;ERATE=0.0006;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149854050 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0151;AVGPOST=0.9991;RSQ=0.9780;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 149854200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149854299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149854307 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0045;AVGPOST=0.9995;RSQ=0.9531;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149854428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9678;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149854432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7582;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149854445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6721;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149854583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0399;AVGPOST=0.9996;RSQ=0.9965;ERATE=0.0003;THETA=0.0007;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 149854683 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9437;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149854748 . TA T 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7393;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149854797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8031;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149854813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149854873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0014;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149854991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9874;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149855021 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149855053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149855058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.9620;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=2101;AN=2184 GT:DS:GL:BD 0.96199632 1 1 149855059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149855083 . T TA 236 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6684;ERATE=0.0004;THETA=0.0061;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149855236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8891;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149855333 . AC A 638 PASS INDEL;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9592;ERATE=0.0003;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149855396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.928;LDAF=0.1880;AVGPOST=0.9741;RSQ=0.9391;ERATE=0.0085;THETA=0.0030;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 149855549 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.897;LDAF=0.0253;AVGPOST=0.9971;RSQ=0.9559;ERATE=0.0016;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149855572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8493;ERATE=0.0003;THETA=0.0041;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149855667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5882;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149855753 . GC G 174 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5510;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149855800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2478;AVGPOST=0.9955;RSQ=0.9907;ERATE=0.0005;THETA=0.0007;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 149855874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7548;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149855935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149855994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149856104 . CATT C 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149856123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9624;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149856150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7055;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149856188 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5704;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149856250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8617;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149856353 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9273;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149856376 . GCTTT G 739 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8383;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149856376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149856587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149856743 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0337;AVGPOST=0.9991;RSQ=0.9908;ERATE=0.0004;THETA=0.0012;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 149856881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149856995 . G GGTAT 5733 PASS INDEL;BAVGPOST=0.985;BRSQ=0.760;LDAF=0.0299;AVGPOST=0.9844;RSQ=0.7913;ERATE=0.0010;THETA=0.0032;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149857023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0447;AVGPOST=0.9992;RSQ=0.9923;ERATE=0.0004;THETA=0.0012;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149857163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.456;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5547;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149857308 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149857330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0572;AVGPOST=0.9971;RSQ=0.9802;ERATE=0.0004;THETA=0.0009;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 149857627 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6260;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=1368;AN=2184 GT:DS:GL:BD 0.62637365 1 1 149857669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149857678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6311;AVGPOST=0.9953;RSQ=0.9916;ERATE=0.0008;THETA=0.0005;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 149857716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4728;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149857915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0037;AVGPOST=0.9947;RSQ=0.3880;ERATE=0.0011;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149857916 . AC A 196 PASS INDEL;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0037;AVGPOST=0.9974;RSQ=0.6860;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149858008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149858414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.921;LDAF=0.0409;AVGPOST=0.9956;RSQ=0.9525;ERATE=0.0004;THETA=0.0002;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 149858455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7526;ERATE=0.0010;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149858511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3148;AVGPOST=0.9939;RSQ=0.9896;ERATE=0.0006;THETA=0.0004;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 149858576 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.8008;AVGPOST=0.9953;RSQ=0.9884;ERATE=0.0006;THETA=0.0004;AC=1751;AN=2184 GT:DS:GL:BD 0.80173993 1 1 149858708 . T TA 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4193;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149858761 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4906;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149858807 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149858934 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149858941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0904;AVGPOST=0.9975;RSQ=0.9885;ERATE=0.0004;THETA=0.0007;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 149858979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149859054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8193;ERATE=0.0014;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149859055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149859118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149859172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5708;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149859209 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8083;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149859318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7186;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149859412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8867;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149859413 . T TAA 1041 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9325;ERATE=0.0004;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149859453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.558;LDAF=0.0043;AVGPOST=0.9933;RSQ=0.3932;ERATE=0.0011;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149859738 . A AT 193 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.4930;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149859783 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.2958;AVGPOST=0.9955;RSQ=0.9921;ERATE=0.0006;THETA=0.0004;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 149859868 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149860001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5926;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149860096 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.4664;ERATE=0.0006;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149860203 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.849;LDAF=0.0119;AVGPOST=0.9960;RSQ=0.8682;ERATE=0.0005;THETA=0.0020;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149860763 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7472;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149860789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149860827 . A AT 14955 PASS INDEL;BAVGPOST=0.949;BRSQ=0.909;LDAF=0.5982;AVGPOST=0.9380;RSQ=0.9004;ERATE=0.0131;THETA=0.0003;AC=1330;AN=2184 GT:DS:GL:BD 0.60897434 1 1 149860996 rs11424827 T TA 68119 PASS INDEL;BAVGPOST=0.973;BRSQ=0.955;LDAF=0.6367;AVGPOST=0.9816;RSQ=0.9709;ERATE=0.0004;THETA=0.0004;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 149860997 . A AC 14259 PASS INDEL;BAVGPOST=0.952;BRSQ=0.915;LDAF=0.6080;AVGPOST=0.9505;RSQ=0.9215;ERATE=0.0081;THETA=0.0005;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 149860998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9310;ERATE=0.0003;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149861086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5723;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149861328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5325;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149861360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9968;RSQ=0.4395;ERATE=0.0013;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149861361 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5758;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149861382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.968;LDAF=0.1547;AVGPOST=0.9896;RSQ=0.9708;ERATE=0.0010;THETA=0.0005;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 149861384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0299;AVGPOST=0.9995;RSQ=0.9931;ERATE=0.0003;THETA=0.0029;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149861630 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0260;AVGPOST=0.9980;RSQ=0.9678;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149861640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149861765 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1665;AVGPOST=0.9976;RSQ=0.9940;ERATE=0.0003;THETA=0.0020;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 149861793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1014;AVGPOST=0.9972;RSQ=0.9882;ERATE=0.0004;THETA=0.0002;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 149861893 . TA T 213 PASS INDEL;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6732;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149861895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2807;AVGPOST=0.9958;RSQ=0.9917;ERATE=0.0006;THETA=0.0024;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 149861935 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1571;AVGPOST=0.9963;RSQ=0.9903;ERATE=0.0006;THETA=0.0037;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 149861946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8505;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149861991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7159;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149862154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149862279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4061;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149862305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7333;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149862329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0063;AVGPOST=0.9965;RSQ=0.8003;ERATE=0.0006;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149862337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0065;AVGPOST=0.9960;RSQ=0.7760;ERATE=0.0006;THETA=0.0053;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149862340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0142;AVGPOST=0.9872;RSQ=0.6402;ERATE=0.0022;THETA=0.0044;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149862352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0053;AVGPOST=0.9982;RSQ=0.8648;ERATE=0.0004;THETA=0.0028;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149862357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0053;AVGPOST=0.9954;RSQ=0.6582;ERATE=0.0005;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149862358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5717;ERATE=0.0006;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149862499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.945;LDAF=0.3488;AVGPOST=0.9485;RSQ=0.9261;ERATE=0.0064;THETA=0.0066;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 149862515 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7775;ERATE=0.0005;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149862594 . T TAGA 12 PASS INDEL;BAVGPOST=0.964;BRSQ=0.024;LDAF=0.0957;AVGPOST=0.8372;RSQ=0.2469;ERATE=0.0074;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149862822 . T TAGA 138 PASS INDEL;BAVGPOST=0.936;BRSQ=0.060;LDAF=0.1059;AVGPOST=0.8457;RSQ=0.3454;ERATE=0.0106;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 149862849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.858;LDAF=0.1888;AVGPOST=0.8905;RSQ=0.7099;ERATE=0.0211;THETA=0.0025;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 149863014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.931;LDAF=0.1258;AVGPOST=0.9833;RSQ=0.9398;ERATE=0.0009;THETA=0.0021;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 149863035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.846;BRSQ=0.695;LDAF=0.2779;AVGPOST=0.8415;RSQ=0.7197;ERATE=0.0576;THETA=0.0007;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 149863120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.510;LDAF=0.0549;AVGPOST=0.9385;RSQ=0.5473;ERATE=0.0078;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 149863136 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7265;ERATE=0.0007;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149863156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7672;ERATE=0.0014;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149863277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.9973;AVGPOST=0.9980;RSQ=0.7208;ERATE=0.0005;THETA=0.0005;AC=2180;AN=2184 GT:DS:GL:BD 0.99816847 1 1 149863396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7721;ERATE=0.0015;THETA=0.0037;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149863451 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149863482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7578;ERATE=0.0003;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149863495 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6526;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5882;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0208;AVGPOST=0.9949;RSQ=0.8986;ERATE=0.0005;THETA=0.0023;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149863771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7681;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149863836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9483;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149863852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149863897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8095;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149863902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149863929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9437;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149864066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149864254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7551;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149864416 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0152;AVGPOST=0.9971;RSQ=0.9241;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149864448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149864465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0129;AVGPOST=0.9982;RSQ=0.9551;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149864467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0056;AVGPOST=0.9966;RSQ=0.7500;ERATE=0.0004;THETA=0.0040;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149864497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.9545;AVGPOST=0.9961;RSQ=0.9657;ERATE=0.0009;THETA=0.0006;AC=2087;AN=2184 GT:DS:GL:BD 0.95558608 1 1 149864504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6983;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149864572 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6830;ERATE=0.0008;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149864599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0863;AVGPOST=0.9965;RSQ=0.9820;ERATE=0.0003;THETA=0.0015;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 149864652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.1003;AVGPOST=0.9989;RSQ=0.9950;ERATE=0.0004;THETA=0.0007;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 149864818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6142;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149864822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149864941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6093;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149864978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149865000 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1341;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 149865297 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865353 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.6055;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149865514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4770;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149865857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6666;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149866068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2526;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0005;THETA=0.0005;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 149866124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149866256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1202;AVGPOST=0.9988;RSQ=0.9960;ERATE=0.0003;THETA=0.0012;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 149866257 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149866267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2532;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 149866287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149866312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0330;AVGPOST=0.9992;RSQ=0.9888;ERATE=0.0004;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149866387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8920;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149866391 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0032;AVGPOST=0.9975;RSQ=0.6848;ERATE=0.0015;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149866403 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9187;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149866408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8838;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149866437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7712;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149866477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8547;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149866554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7553;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149866714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5519;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149866724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.836;LDAF=0.0164;AVGPOST=0.9970;RSQ=0.9218;ERATE=0.0006;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149866740 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0219;AVGPOST=0.9985;RSQ=0.9766;ERATE=0.0003;THETA=0.0069;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149866863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149866931 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149866964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149867069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9559;AVGPOST=0.9981;RSQ=0.9838;ERATE=0.0003;THETA=0.0007;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 149867074 . G GT 115 PASS INDEL;BAVGPOST=0.994;BRSQ=0.636;LDAF=0.0071;AVGPOST=0.9926;RSQ=0.6000;ERATE=0.0021;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149867188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2571;AVGPOST=0.9961;RSQ=0.9913;ERATE=0.0007;THETA=0.0012;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 149867477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149867534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2334;AVGPOST=0.9939;RSQ=0.9887;ERATE=0.0006;THETA=0.0006;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 149867575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149867659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149867800 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0068;AVGPOST=0.9987;RSQ=0.9339;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149867834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0081;AVGPOST=0.9976;RSQ=0.8967;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149867861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149867874 . CT C 226 PASS INDEL;BAVGPOST=0.987;BRSQ=0.399;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.6829;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149867950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4624;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0006;THETA=0.0002;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 149867973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4434;AVGPOST=0.9984;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 149868125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149868320 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4632;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0005;THETA=0.0005;AC=1010;AN=2184 GT:DS:GL:BD 0.46245420 0 1 149868369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7937;ERATE=0.0003;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149868403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6877;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149868433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8688;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149868457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9818;AVGPOST=0.9991;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 149868516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7182;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149868670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149868743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0110;AVGPOST=0.9994;RSQ=0.9748;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149868794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8424;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149868824 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1771;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 149868837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6716;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 149868904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6701;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=1464;AN=2184 GT:DS:GL:BD 0.67032969 1 1 149868948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1769;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0004;THETA=0.0005;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 149868955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1548;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 149869018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0816;AVGPOST=0.9990;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 149869056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.943;LDAF=0.5839;AVGPOST=0.9791;RSQ=0.9682;ERATE=0.0010;THETA=0.0007;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 149869116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.950;LDAF=0.5870;AVGPOST=0.9822;RSQ=0.9724;ERATE=0.0010;THETA=0.0003;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 149869130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.964;LDAF=0.5888;AVGPOST=0.9819;RSQ=0.9723;ERATE=0.0014;THETA=0.0004;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 149869147 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.932;LDAF=0.7716;AVGPOST=0.9557;RSQ=0.9158;ERATE=0.0042;THETA=0.0002;AC=1703;AN=2184 GT:DS:GL:BD 0.77976191 1 1 149869198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8107;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149869209 rs55660532 CA C 59970 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.6246;AVGPOST=0.9857;RSQ=0.9773;ERATE=0.0026;THETA=0.0002;AC=1369;AN=2184 GT:DS:GL:BD 0.62683153 1 1 149869310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0489;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 149869325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7770;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149869349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149869419 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6306;AVGPOST=0.9980;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=1376;AN=2184 GT:DS:GL:BD 0.63003665 1 1 149869428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9722;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149869539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7712;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149869617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8487;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=1853;AN=2184 GT:DS:GL:BD 0.84844321 1 1 149869631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149869748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149869850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4053;AVGPOST=0.9983;RSQ=0.9977;ERATE=0.0005;THETA=0.0009;AC=886;AN=2184 GT:DS:GL:BD 0.40567765 0 1 149869865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9745;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149869905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1877;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 149869911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2176;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0007;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 149869990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4050;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0004;THETA=0.0006;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 149870027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2178;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0005;THETA=0.0003;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 149870230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4049;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0004;THETA=0.0010;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 149870252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8391;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149870263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1881;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 149870273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6493;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149870280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7101;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149870316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149870445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870533 . GGAAGTA G 203 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.4340;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1874;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0010;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 149870566 . G GC 17723 PASS INDEL;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4032;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0007;THETA=0.0006;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 149870622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9566;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149870738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1872;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 149870749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1872;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 149870764 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149870823 rs36002895 G GT 46407 PASS INDEL;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4074;AVGPOST=0.9965;RSQ=0.9948;ERATE=0.0005;THETA=0.0005;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 149870895 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870965 . T TCC 18212 PASS INDEL;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.3975;AVGPOST=0.9669;RSQ=0.9531;ERATE=0.0077;THETA=0.0012;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 149870988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5694;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149870998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4439;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0003;THETA=0.0010;AC=969;AN=2184 GT:DS:GL:BD 0.44368133 0 1 149871055 . TC T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6487;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149871108 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0059;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149871203 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9825;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149871267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2161;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 149871368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149871552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0136;AVGPOST=0.9984;RSQ=0.9581;ERATE=0.0003;THETA=0.0030;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149871701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.953;LDAF=0.1253;AVGPOST=0.9877;RSQ=0.9612;ERATE=0.0004;THETA=0.0038;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 149871725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6700;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149871729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149871811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.918;LDAF=0.0229;AVGPOST=0.9980;RSQ=0.9647;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149871933 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0246;AVGPOST=0.9977;RSQ=0.9679;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149871999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.973;LDAF=0.3813;AVGPOST=0.9910;RSQ=0.9862;ERATE=0.0015;THETA=0.0003;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 149872052 . G GC 364 PASS INDEL;BAVGPOST=0.830;BRSQ=0.218;LDAF=0.1978;AVGPOST=0.7427;RSQ=0.3320;ERATE=0.0277;THETA=0.0093;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149872156 rs35771646 T TC 27958 PASS INDEL;BAVGPOST=0.983;BRSQ=0.919;LDAF=0.8895;AVGPOST=0.9859;RSQ=0.9449;ERATE=0.0011;THETA=0.0004;AC=1945;AN=2184 GT:DS:GL:BD 0.89056778 1 1 149872162 . C CA 5187 PASS INDEL;BAVGPOST=0.848;BRSQ=0.555;LDAF=0.7414;AVGPOST=0.7817;RSQ=0.5430;ERATE=0.0262;THETA=0.0009;AC=1755;AN=2184 GT:DS:GL:BD 0.80357140 1 1 149872164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.025;LDAF=0.9699;AVGPOST=0.9565;RSQ=0.4081;ERATE=0.0016;THETA=0.0027;AC=2141;AN=2184 GT:DS:GL:BD 0.98031133 1 1 149872303 . CCCT C 4194 PASS INDEL;BAVGPOST=0.772;BRSQ=0.590;LDAF=0.5728;AVGPOST=0.7616;RSQ=0.6225;ERATE=0.0153;THETA=0.0006;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 149872319 rs74163455 CCT C 6607 PASS INDEL;BAVGPOST=0.828;BRSQ=0.683;LDAF=0.6113;AVGPOST=0.7854;RSQ=0.6477;ERATE=0.0138;THETA=0.0018;AC=1441;AN=2184 GT:DS:GL:BD 0.65979856 1 1 149872320 rs74163455 CT C 5783 PASS INDEL;BAVGPOST=0.831;BRSQ=0.687;LDAF=0.6149;AVGPOST=0.8276;RSQ=0.7202;ERATE=0.0108;THETA=0.0007;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 149872321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.776;LDAF=0.9761;AVGPOST=0.9869;RSQ=0.7781;ERATE=0.0012;THETA=0.0011;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 149872355 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7814;AVGPOST=0.9908;RSQ=0.9820;ERATE=0.0006;THETA=0.0013;AC=1707;AN=2184 GT:DS:GL:BD 0.78159338 1 1 149872503 rs3841811 A AGGGGC 14835 PASS INDEL;BAVGPOST=0.858;BRSQ=0.692;LDAF=0.7747;AVGPOST=0.9230;RSQ=0.8390;ERATE=0.0056;THETA=0.0004;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 149872648 . C CGGGGG 12386 PASS INDEL;BAVGPOST=0.593;BRSQ=0.325;LDAF=0.4456;AVGPOST=0.6569;RSQ=0.3600;ERATE=0.0828;THETA=0.0018;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 149872658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4146;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149872713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0505;AVGPOST=0.9984;RSQ=0.9864;ERATE=0.0005;THETA=0.0008;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 149872731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149872959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0197;AVGPOST=0.9988;RSQ=0.9757;ERATE=0.0003;THETA=0.0036;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149873045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149873065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8325;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149873120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0197;AVGPOST=0.9975;RSQ=0.9453;ERATE=0.0005;THETA=0.0075;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149873147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5216;ERATE=0.0003;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149873151 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5650;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149873367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0228;AVGPOST=0.9964;RSQ=0.9376;ERATE=0.0002;THETA=0.0022;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149873471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8331;ERATE=0.0003;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149873479 . TG T 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0039;AVGPOST=0.9965;RSQ=0.6276;ERATE=0.0005;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149873542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149873556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0095;AVGPOST=0.9983;RSQ=0.9388;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149873599 rs3838410 AT A 9485 PASS INDEL;BAVGPOST=0.939;BRSQ=0.859;LDAF=0.2558;AVGPOST=0.8911;RSQ=0.7881;ERATE=0.0209;THETA=0.0014;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 149873644 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.917;LDAF=0.4181;AVGPOST=0.9289;RSQ=0.8869;ERATE=0.0146;THETA=0.0027;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 149873654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.961;LDAF=0.0401;AVGPOST=0.9924;RSQ=0.9308;ERATE=0.0004;THETA=0.0056;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 149873732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0033;AVGPOST=0.9957;RSQ=0.4950;ERATE=0.0007;THETA=0.0095;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149873814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0037;AVGPOST=0.9947;RSQ=0.4123;ERATE=0.0012;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149873852 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.520;LDAF=0.0095;AVGPOST=0.9924;RSQ=0.6747;ERATE=0.0007;THETA=0.0141;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149873882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0043;AVGPOST=0.9947;RSQ=0.5207;ERATE=0.0007;THETA=0.0089;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149873913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0044;AVGPOST=0.9945;RSQ=0.5003;ERATE=0.0006;THETA=0.0105;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149873940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.835;LDAF=0.1787;AVGPOST=0.9261;RSQ=0.8142;ERATE=0.0215;THETA=0.0067;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 149873949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7161;ERATE=0.0004;THETA=0.0108;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149873965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6693;ERATE=0.0004;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149873972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0002;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149874004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0354;AVGPOST=0.9975;RSQ=0.9769;ERATE=0.0003;THETA=0.0040;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 149874012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0083;AVGPOST=0.9983;RSQ=0.9239;ERATE=0.0002;THETA=0.0068;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149874045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9317;ERATE=0.0003;THETA=0.0147;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149874146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149874158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0673;AVGPOST=0.9978;RSQ=0.9881;ERATE=0.0003;THETA=0.0011;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 149874197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0196;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0002;THETA=0.0064;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149874312 rs34376015 CTTTT C 43998 PASS INDEL;BAVGPOST=0.975;BRSQ=0.952;LDAF=0.3555;AVGPOST=0.9585;RSQ=0.9339;ERATE=0.0062;THETA=0.0058;AC=771;AN=2184 GT:DS:GL:BD 0.35302198 0 1 149874339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9421;ERATE=0.0002;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149874587 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0184;AVGPOST=0.9989;RSQ=0.9799;ERATE=0.0002;THETA=0.0013;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149874635 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0340;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0002;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 149874687 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8819;ERATE=0.0004;THETA=0.0056;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149874791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0123;AVGPOST=0.9969;RSQ=0.8932;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149874807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0142;AVGPOST=0.9992;RSQ=0.9782;ERATE=0.0003;THETA=0.0017;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149874838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.2216;AVGPOST=0.9864;RSQ=0.9708;ERATE=0.0004;THETA=0.0008;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 149874903 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0886;AVGPOST=0.9889;RSQ=0.9569;ERATE=0.0004;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 149874998 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.961;LDAF=0.6579;AVGPOST=0.9573;RSQ=0.9303;ERATE=0.0042;THETA=0.0004;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 149875010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0183;AVGPOST=0.9990;RSQ=0.9744;ERATE=0.0004;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149875078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149875111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.718;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7265;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149875805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4726;AVGPOST=0.9944;RSQ=0.9917;ERATE=0.0008;THETA=0.0004;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 149875896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4498;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149875905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.6345;AVGPOST=0.9830;RSQ=0.9735;ERATE=0.0017;THETA=0.0002;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 149876134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6238;AVGPOST=0.9965;RSQ=0.9937;ERATE=0.0006;THETA=0.0004;AC=1365;AN=2184 GT:DS:GL:BD 0.62500000 1 1 149876201 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8269;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149876234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149876353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149876364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149876368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6244;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=1365;AN=2184 GT:DS:GL:BD 0.62500000 1 1 149876479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149876513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149876628 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149876646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149876670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9892;ERATE=0.0007;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149876727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9685;ERATE=0.0002;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149876740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149876758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149876843 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0869;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0002;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 149876908 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0869;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0002;THETA=0.0003;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 149876917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149877053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.6124;AVGPOST=0.9880;RSQ=0.9812;ERATE=0.0014;THETA=0.0006;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 149877130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0642;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 149877209 . AACAGGC A 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4233;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877335 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8620;ERATE=0.0002;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149877386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0083;AVGPOST=0.9941;RSQ=0.7500;ERATE=0.0006;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149877410 . CT C 508 PASS INDEL;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.5330;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149877429 . CATT C 6802 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0300;AVGPOST=0.9990;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149877444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4622;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149877611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8138;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149877697 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6243;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=1364;AN=2184 GT:DS:GL:BD 0.62454212 1 1 149877742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0052;AVGPOST=0.9953;RSQ=0.6459;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149877804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8017;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149877854 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6076;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149877883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0641;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 149877927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.500;LDAF=0.0037;AVGPOST=0.9951;RSQ=0.4428;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149877943 . C CCTT 2933 PASS INDEL;BAVGPOST=0.831;BRSQ=0.281;LDAF=0.1097;AVGPOST=0.8958;RSQ=0.5720;ERATE=0.0035;THETA=0.0035;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149878801 . TA T 27 PASS INDEL;BAVGPOST=0.972;BRSQ=0.224;LDAF=0.0406;AVGPOST=0.9330;RSQ=0.2566;ERATE=0.0051;THETA=0.0067;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149878857 . C CT 1560 PASS INDEL;BAVGPOST=0.877;BRSQ=0.311;LDAF=0.1123;AVGPOST=0.8816;RSQ=0.5199;ERATE=0.0048;THETA=0.0050;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 149878870 . TC T 50 PASS INDEL;BAVGPOST=0.870;BRSQ=0.216;LDAF=0.0875;AVGPOST=0.8842;RSQ=0.4398;ERATE=0.0048;THETA=0.0141;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149878873 . C CT 4914 PASS INDEL;BAVGPOST=0.819;BRSQ=0.313;LDAF=0.1199;AVGPOST=0.9053;RSQ=0.6581;ERATE=0.0028;THETA=0.0079;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 149878924 . T TCA 3065 PASS INDEL;BAVGPOST=0.480;BRSQ=0.209;LDAF=0.6917;AVGPOST=0.7429;RSQ=0.5135;ERATE=0.0011;THETA=0.0010;AC=1725;AN=2184 GT:DS:GL:BD 0.78983516 1 1 149879059 . C CAG 7882 PASS INDEL;BAVGPOST=0.503;BRSQ=0.213;LDAF=0.6736;AVGPOST=0.7114;RSQ=0.4867;ERATE=0.0042;THETA=0.0079;AC=1691;AN=2184 GT:DS:GL:BD 0.77426738 1 1 149879060 . TTC T 87668 PASS INDEL;BAVGPOST=0.902;BRSQ=0.787;LDAF=0.6292;AVGPOST=0.9256;RSQ=0.8475;ERATE=0.0097;THETA=0.0054;AC=1371;AN=2184 GT:DS:GL:BD 0.62774724 1 1 149879153 . C CA 207 PASS INDEL;BAVGPOST=0.996;BRSQ=0.302;LDAF=0.0056;AVGPOST=0.9909;RSQ=0.2589;ERATE=0.0013;THETA=0.0150;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149879267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.690;BRSQ=0.372;LDAF=0.6892;AVGPOST=0.7071;RSQ=0.4838;ERATE=0.0151;THETA=0.0160;AC=1692;AN=2184 GT:DS:GL:BD 0.77472526 1 1 149879322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.715;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7434;ERATE=0.0007;THETA=0.0069;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149879643 . TATGA T 14219 PASS INDEL;BAVGPOST=0.793;BRSQ=0.495;LDAF=0.2745;AVGPOST=0.8259;RSQ=0.6390;ERATE=0.0136;THETA=0.0079;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 149879706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.762;LDAF=0.6200;AVGPOST=0.9005;RSQ=0.8189;ERATE=0.0073;THETA=0.0183;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 149879829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4815;ERATE=0.0004;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149879845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.534;LDAF=0.0730;AVGPOST=0.9148;RSQ=0.4912;ERATE=0.0089;THETA=0.0102;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 149879998 rs3033624 C CTATT 1298 PASS INDEL;BAVGPOST=0.595;BRSQ=0.056;LDAF=0.2830;AVGPOST=0.6286;RSQ=0.2369;ERATE=0.0173;THETA=0.0074;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 149880014 rs66799644 CTG C 6619 PASS INDEL;BAVGPOST=0.702;BRSQ=0.559;LDAF=0.5934;AVGPOST=0.8013;RSQ=0.7256;ERATE=0.0073;THETA=0.0093;AC=1387;AN=2184 GT:DS:GL:BD 0.63507324 1 1 149880029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.773;BRSQ=0.623;LDAF=0.6628;AVGPOST=0.8175;RSQ=0.7258;ERATE=0.0084;THETA=0.0011;AC=1522;AN=2184 GT:DS:GL:BD 0.69688642 1 1 149880041 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.735;LDAF=0.0152;AVGPOST=0.9933;RSQ=0.8148;ERATE=0.0008;THETA=0.0093;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149880084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.961;LDAF=0.1511;AVGPOST=0.9789;RSQ=0.9402;ERATE=0.0006;THETA=0.0128;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 149880096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.862;LDAF=0.0072;AVGPOST=0.9976;RSQ=0.8556;ERATE=0.0008;THETA=0.0191;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149880116 rs112648707 AAAC A 29822 PASS INDEL;BAVGPOST=0.935;BRSQ=0.893;LDAF=0.7282;AVGPOST=0.9488;RSQ=0.9220;ERATE=0.0010;THETA=0.0014;AC=1610;AN=2184 GT:DS:GL:BD 0.73717946 1 1 149880146 rs112648707 AAC A 40114 PASS INDEL;BAVGPOST=0.935;BRSQ=0.893;LDAF=0.7314;AVGPOST=0.9555;RSQ=0.9301;ERATE=0.0016;THETA=0.0069;AC=1610;AN=2184 GT:DS:GL:BD 0.73717946 1 1 149880147 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.896;LDAF=0.9231;AVGPOST=0.9768;RSQ=0.8989;ERATE=0.0016;THETA=0.0210;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 149880229 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.889;LDAF=0.6428;AVGPOST=0.9360;RSQ=0.9126;ERATE=0.0069;THETA=0.0129;AC=1419;AN=2184 GT:DS:GL:BD 0.64972526 1 1 149880272 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.855;LDAF=0.0590;AVGPOST=0.9858;RSQ=0.8989;ERATE=0.0009;THETA=0.0052;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 149880297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3854;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149880306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.937;LDAF=0.1624;AVGPOST=0.9766;RSQ=0.9391;ERATE=0.0006;THETA=0.0017;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 149880314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.385;LDAF=0.0074;AVGPOST=0.9893;RSQ=0.4160;ERATE=0.0007;THETA=0.0062;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149880334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.786;LDAF=0.0407;AVGPOST=0.9787;RSQ=0.8288;ERATE=0.0013;THETA=0.0009;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 149880344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.608;LDAF=0.0212;AVGPOST=0.9778;RSQ=0.5637;ERATE=0.0038;THETA=0.0104;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149880476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.677;LDAF=0.3224;AVGPOST=0.8803;RSQ=0.7358;ERATE=0.0065;THETA=0.0038;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 149880487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.664;LDAF=0.3964;AVGPOST=0.8338;RSQ=0.7250;ERATE=0.0176;THETA=0.0050;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 149880509 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.790;LDAF=0.0262;AVGPOST=0.9945;RSQ=0.9090;ERATE=0.0007;THETA=0.0061;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149880521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.673;LDAF=0.3125;AVGPOST=0.8872;RSQ=0.7424;ERATE=0.0077;THETA=0.0154;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 149880524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.892;LDAF=0.7440;AVGPOST=0.9625;RSQ=0.9400;ERATE=0.0012;THETA=0.0070;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 149880594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.875;LDAF=0.2029;AVGPOST=0.9704;RSQ=0.9363;ERATE=0.0009;THETA=0.0042;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 149880599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.870;LDAF=0.7228;AVGPOST=0.9386;RSQ=0.9064;ERATE=0.0042;THETA=0.0272;AC=1604;AN=2184 GT:DS:GL:BD 0.73443222 1 1 149880603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.919;LDAF=0.6668;AVGPOST=0.9534;RSQ=0.9301;ERATE=0.0008;THETA=0.0093;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 149880639 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.920;LDAF=0.6689;AVGPOST=0.9559;RSQ=0.9328;ERATE=0.0011;THETA=0.0086;AC=1472;AN=2184 GT:DS:GL:BD 0.67399269 1 1 149880648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.879;LDAF=0.0558;AVGPOST=0.9885;RSQ=0.9207;ERATE=0.0006;THETA=0.0090;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 149880697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.961;LDAF=0.1606;AVGPOST=0.9871;RSQ=0.9630;ERATE=0.0010;THETA=0.0044;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 149880698 . CA C 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7295;ERATE=0.0005;THETA=0.0088;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149880707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.801;LDAF=0.0753;AVGPOST=0.9736;RSQ=0.8567;ERATE=0.0015;THETA=0.0074;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 149880735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.959;LDAF=0.9321;AVGPOST=0.9871;RSQ=0.9326;ERATE=0.0008;THETA=0.0040;AC=2044;AN=2184 GT:DS:GL:BD 0.93589741 1 1 149880767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.870;LDAF=0.7000;AVGPOST=0.9440;RSQ=0.9074;ERATE=0.0037;THETA=0.0025;AC=1540;AN=2184 GT:DS:GL:BD 0.70512819 1 1 149880775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.600;LDAF=0.0135;AVGPOST=0.9870;RSQ=0.6306;ERATE=0.0009;THETA=0.0080;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149880779 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.704;LDAF=0.0921;AVGPOST=0.9472;RSQ=0.7513;ERATE=0.0061;THETA=0.0020;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149880823 . A AT 835 PASS INDEL;BAVGPOST=0.989;BRSQ=0.643;LDAF=0.0201;AVGPOST=0.9761;RSQ=0.5126;ERATE=0.0020;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149880842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.969;LDAF=0.1637;AVGPOST=0.9814;RSQ=0.9475;ERATE=0.0006;THETA=0.0073;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 149880874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.640;LDAF=0.0260;AVGPOST=0.9814;RSQ=0.7405;ERATE=0.0005;THETA=0.0033;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149880887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.620;LDAF=0.0319;AVGPOST=0.9764;RSQ=0.7277;ERATE=0.0007;THETA=0.0011;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149880892 . AAT A 257 PASS INDEL;BAVGPOST=0.983;BRSQ=0.605;LDAF=0.0238;AVGPOST=0.9805;RSQ=0.6722;ERATE=0.0040;THETA=0.0109;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149880920 rs58782423 GAACA G 8227 PASS INDEL;BAVGPOST=0.966;BRSQ=0.896;LDAF=0.1572;AVGPOST=0.9717;RSQ=0.9201;ERATE=0.0036;THETA=0.0033;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 149880989 rs58782423 C CAATT 103 PASS INDEL;BAVGPOST=0.994;BRSQ=0.543;LDAF=0.0057;AVGPOST=0.9958;RSQ=0.6725;ERATE=0.0010;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149880992 . AG A 41 PASS INDEL;BAVGPOST=0.996;BRSQ=0.521;LDAF=0.0043;AVGPOST=0.9954;RSQ=0.5727;ERATE=0.0005;THETA=0.0053;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149881030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.791;LDAF=0.0564;AVGPOST=0.9811;RSQ=0.8664;ERATE=0.0009;THETA=0.0054;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 149881031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.919;LDAF=0.0943;AVGPOST=0.9830;RSQ=0.9311;ERATE=0.0014;THETA=0.0067;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 149881048 rs66595339 CAATT C 52473 PASS INDEL;BAVGPOST=0.929;BRSQ=0.868;LDAF=0.6136;AVGPOST=0.9267;RSQ=0.8846;ERATE=0.0097;THETA=0.0019;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 149881081 rs77645835 A AT 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.4905;ERATE=0.0007;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149881083 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.632;LDAF=0.0117;AVGPOST=0.9900;RSQ=0.6083;ERATE=0.0010;THETA=0.0040;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149881149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.963;LDAF=0.1399;AVGPOST=0.9831;RSQ=0.9469;ERATE=0.0016;THETA=0.0070;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 149881152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.930;LDAF=0.6920;AVGPOST=0.9646;RSQ=0.9407;ERATE=0.0011;THETA=0.0092;AC=1509;AN=2184 GT:DS:GL:BD 0.69093406 1 1 149881175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.852;LDAF=0.1128;AVGPOST=0.9657;RSQ=0.8811;ERATE=0.0025;THETA=0.0096;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 149881183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.970;LDAF=0.9333;AVGPOST=0.9897;RSQ=0.9468;ERATE=0.0008;THETA=0.0275;AC=2043;AN=2184 GT:DS:GL:BD 0.93543959 1 1 149881219 . T TCA 11030 PASS INDEL;BAVGPOST=0.820;BRSQ=0.559;LDAF=0.7547;AVGPOST=0.7644;RSQ=0.5265;ERATE=0.0204;THETA=0.0038;AC=1883;AN=2184 GT:DS:GL:BD 0.86217946 1 1 149881426 . C CAG 26111 PASS INDEL;BAVGPOST=0.877;BRSQ=0.667;LDAF=0.8775;AVGPOST=0.9425;RSQ=0.8355;ERATE=0.0033;THETA=0.0028;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 149881427 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.785;BRSQ=0.565;LDAF=0.2880;AVGPOST=0.7779;RSQ=0.6279;ERATE=0.0027;THETA=0.0040;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 149881437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.576;LDAF=0.0206;AVGPOST=0.9790;RSQ=0.5585;ERATE=0.0010;THETA=0.0053;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149881439 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.664;LDAF=0.0190;AVGPOST=0.9755;RSQ=0.3994;ERATE=0.0021;THETA=0.0034;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149881445 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.363;LDAF=0.0132;AVGPOST=0.9787;RSQ=0.3052;ERATE=0.0020;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149881450 . T TTTA 643 PASS INDEL;BAVGPOST=0.979;BRSQ=0.432;LDAF=0.0361;AVGPOST=0.9463;RSQ=0.3438;ERATE=0.0027;THETA=0.0067;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149881477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.469;LDAF=0.0037;AVGPOST=0.9951;RSQ=0.3844;ERATE=0.0007;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149881496 . C CTT 151 PASS INDEL;BAVGPOST=0.969;BRSQ=0.268;LDAF=0.0597;AVGPOST=0.9045;RSQ=0.2786;ERATE=0.0095;THETA=0.0056;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149881523 . A AAT 20664 PASS INDEL;BAVGPOST=0.897;BRSQ=0.677;LDAF=0.8832;AVGPOST=0.9293;RSQ=0.7881;ERATE=0.0031;THETA=0.0105;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 149881525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.943;LDAF=0.9445;AVGPOST=0.9941;RSQ=0.9591;ERATE=0.0006;THETA=0.0019;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 149881836 . CTT C 114 PASS INDEL;BAVGPOST=0.993;BRSQ=0.604;LDAF=0.0095;AVGPOST=0.9940;RSQ=0.7501;ERATE=0.0010;THETA=0.0015;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149881841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.825;BRSQ=0.699;LDAF=0.6516;AVGPOST=0.8394;RSQ=0.7451;ERATE=0.0131;THETA=0.0068;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 149881885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.886;LDAF=0.1214;AVGPOST=0.9619;RSQ=0.8650;ERATE=0.0010;THETA=0.0089;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 149881895 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.941;LDAF=0.0902;AVGPOST=0.9787;RSQ=0.9044;ERATE=0.0010;THETA=0.0075;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 149881913 rs3033539 AAG A 170 PASS INDEL;BAVGPOST=0.996;BRSQ=0.665;LDAF=0.0093;AVGPOST=0.9947;RSQ=0.7769;ERATE=0.0005;THETA=0.0021;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149881959 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.837;LDAF=0.0303;AVGPOST=0.9870;RSQ=0.8345;ERATE=0.0019;THETA=0.0059;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149881970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.816;LDAF=0.5302;AVGPOST=0.8935;RSQ=0.8369;ERATE=0.0034;THETA=0.0066;AC=1170;AN=2184 GT:DS:GL:BD 0.53571427 1 1 149882004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.924;LDAF=0.6602;AVGPOST=0.9486;RSQ=0.9146;ERATE=0.0035;THETA=0.0178;AC=1456;AN=2184 GT:DS:GL:BD 0.66666669 1 1 149882098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.841;LDAF=0.0619;AVGPOST=0.9775;RSQ=0.8401;ERATE=0.0012;THETA=0.0021;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 149882103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5601;ERATE=0.0007;THETA=0.0081;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149882112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.937;LDAF=0.0854;AVGPOST=0.9789;RSQ=0.9100;ERATE=0.0005;THETA=0.0036;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 149882132 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.937;LDAF=0.0863;AVGPOST=0.9766;RSQ=0.9006;ERATE=0.0006;THETA=0.0025;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 149882141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.960;LDAF=0.9246;AVGPOST=0.9827;RSQ=0.9244;ERATE=0.0011;THETA=0.0209;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 149882230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.911;LDAF=0.0079;AVGPOST=0.9941;RSQ=0.6591;ERATE=0.0013;THETA=0.0108;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149882244 rs3033536 C CCTGT 42858 PASS INDEL;BAVGPOST=0.932;BRSQ=0.783;LDAF=0.8707;AVGPOST=0.9409;RSQ=0.8388;ERATE=0.0046;THETA=0.0063;AC=1930;AN=2184 GT:DS:GL:BD 0.88369966 1 1 149882288 . C CA 114 PASS INDEL;BAVGPOST=0.989;BRSQ=0.608;LDAF=0.0211;AVGPOST=0.9806;RSQ=0.6285;ERATE=0.0031;THETA=0.0064;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149882338 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.911;LDAF=0.9193;AVGPOST=0.9775;RSQ=0.9136;ERATE=0.0012;THETA=0.0126;AC=2019;AN=2184 GT:DS:GL:BD 0.92445058 1 1 149882361 . G GT 39 PASS INDEL;BAVGPOST=0.977;BRSQ=0.322;LDAF=0.0240;AVGPOST=0.9637;RSQ=0.3797;ERATE=0.0047;THETA=0.0134;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149882361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0054;AVGPOST=0.9967;RSQ=0.7541;ERATE=0.0006;THETA=0.0073;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149882373 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.699;LDAF=0.0100;AVGPOST=0.9916;RSQ=0.6583;ERATE=0.0009;THETA=0.0062;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149882380 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.699;LDAF=0.0791;AVGPOST=0.9372;RSQ=0.6893;ERATE=0.0022;THETA=0.0022;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 149882457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.802;LDAF=0.8113;AVGPOST=0.9133;RSQ=0.8352;ERATE=0.0029;THETA=0.0042;AC=1827;AN=2184 GT:DS:GL:BD 0.83653843 1 1 149882460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.864;BRSQ=0.743;LDAF=0.7740;AVGPOST=0.8674;RSQ=0.7719;ERATE=0.0071;THETA=0.0042;AC=1783;AN=2184 GT:DS:GL:BD 0.81639194 1 1 149882482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.756;LDAF=0.8580;AVGPOST=0.8981;RSQ=0.7630;ERATE=0.0047;THETA=0.0191;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 149882489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.421;LDAF=0.0203;AVGPOST=0.9671;RSQ=0.2953;ERATE=0.0025;THETA=0.0137;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149882500 . CTTAG C 813 PASS INDEL;BAVGPOST=0.951;BRSQ=0.377;LDAF=0.0409;AVGPOST=0.9589;RSQ=0.5866;ERATE=0.0032;THETA=0.0090;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149882551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3150;ERATE=0.0005;THETA=0.0086;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149882598 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.447;LDAF=0.0081;AVGPOST=0.9917;RSQ=0.5851;ERATE=0.0008;THETA=0.0035;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149882669 . C CAGA 2224 PASS INDEL;BAVGPOST=0.950;BRSQ=0.611;LDAF=0.0805;AVGPOST=0.9456;RSQ=0.7147;ERATE=0.0085;THETA=0.0125;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149882672 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.740;LDAF=0.1903;AVGPOST=0.9076;RSQ=0.7809;ERATE=0.0077;THETA=0.0062;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 149882691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.774;LDAF=0.0765;AVGPOST=0.9629;RSQ=0.8041;ERATE=0.0012;THETA=0.0192;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 149882694 . TAAG T 454 PASS INDEL;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7612;ERATE=0.0004;THETA=0.0086;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149882706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8127;ERATE=0.0003;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149882714 rs66931137 TAG T 53457 PASS INDEL;BAVGPOST=0.927;BRSQ=0.864;LDAF=0.6684;AVGPOST=0.9228;RSQ=0.8847;ERATE=0.0044;THETA=0.0044;AC=1471;AN=2184 GT:DS:GL:BD 0.67353481 1 1 149882736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3958;ERATE=0.0006;THETA=0.0174;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149882772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.738;LDAF=0.0268;AVGPOST=0.9886;RSQ=0.8253;ERATE=0.0013;THETA=0.0114;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149882792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.566;LDAF=0.0132;AVGPOST=0.9853;RSQ=0.5469;ERATE=0.0035;THETA=0.0058;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149882816 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.862;LDAF=0.9655;AVGPOST=0.9811;RSQ=0.8068;ERATE=0.0006;THETA=0.0036;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 149882847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.823;LDAF=0.0443;AVGPOST=0.9806;RSQ=0.8635;ERATE=0.0007;THETA=0.0068;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 149882882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.823;LDAF=0.0418;AVGPOST=0.9806;RSQ=0.8548;ERATE=0.0008;THETA=0.0084;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 149882885 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.559;LDAF=0.0173;AVGPOST=0.9924;RSQ=0.8242;ERATE=0.0009;THETA=0.0052;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149882896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5097;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149882902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.884;LDAF=0.6710;AVGPOST=0.9375;RSQ=0.8948;ERATE=0.0081;THETA=0.0041;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 149882947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4655;ERATE=0.0005;THETA=0.0106;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149882972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.799;LDAF=0.8918;AVGPOST=0.9607;RSQ=0.8723;ERATE=0.0006;THETA=0.0034;AC=1961;AN=2184 GT:DS:GL:BD 0.89789379 1 1 149882983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.799;LDAF=0.8949;AVGPOST=0.9617;RSQ=0.8687;ERATE=0.0007;THETA=0.0025;AC=1967;AN=2184 GT:DS:GL:BD 0.90064102 1 1 149882984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.859;LDAF=0.0144;AVGPOST=0.9947;RSQ=0.8688;ERATE=0.0005;THETA=0.0065;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149883019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.688;LDAF=0.0676;AVGPOST=0.9570;RSQ=0.7547;ERATE=0.0032;THETA=0.0180;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 149883020 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7310;ERATE=0.0003;THETA=0.0092;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149883027 . GC G 1012 PASS INDEL;BAVGPOST=0.970;BRSQ=0.690;LDAF=0.0524;AVGPOST=0.9708;RSQ=0.7957;ERATE=0.0014;THETA=0.0076;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 149883031 rs66817370 TGAA T 6004 PASS INDEL;BAVGPOST=0.966;BRSQ=0.791;LDAF=0.0944;AVGPOST=0.9586;RSQ=0.7992;ERATE=0.0061;THETA=0.0094;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 149883058 . CATAA C 4541 PASS INDEL;BAVGPOST=0.979;BRSQ=0.838;LDAF=0.0661;AVGPOST=0.9810;RSQ=0.8907;ERATE=0.0011;THETA=0.0102;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 149883081 . C CAACT 4764 PASS INDEL;BAVGPOST=0.974;BRSQ=0.782;LDAF=0.0648;AVGPOST=0.9728;RSQ=0.8358;ERATE=0.0030;THETA=0.0041;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 149883097 rs10659423 A ACT 83013 PASS INDEL;BAVGPOST=0.928;BRSQ=0.822;LDAF=0.7620;AVGPOST=0.9388;RSQ=0.8634;ERATE=0.0007;THETA=0.0023;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 149883120 rs67705641 C CTA 35959 PASS INDEL;BAVGPOST=0.927;BRSQ=0.820;LDAF=0.7583;AVGPOST=0.9361;RSQ=0.8588;ERATE=0.0009;THETA=0.0225;AC=1679;AN=2184 GT:DS:GL:BD 0.76877290 1 1 149883121 . GTC G 594 PASS INDEL;BAVGPOST=0.991;BRSQ=0.671;LDAF=0.0122;AVGPOST=0.9921;RSQ=0.7585;ERATE=0.0006;THETA=0.0037;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149883140 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.875;LDAF=0.0301;AVGPOST=0.9869;RSQ=0.8562;ERATE=0.0006;THETA=0.0070;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149883148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.709;LDAF=0.0535;AVGPOST=0.9613;RSQ=0.7302;ERATE=0.0006;THETA=0.0095;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 149883159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.872;LDAF=0.9671;AVGPOST=0.9852;RSQ=0.8400;ERATE=0.0009;THETA=0.0097;AC=2118;AN=2184 GT:DS:GL:BD 0.96978021 1 1 149883315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.814;LDAF=0.5847;AVGPOST=0.9107;RSQ=0.8340;ERATE=0.0226;THETA=0.0163;AC=1279;AN=2184 GT:DS:GL:BD 0.58562273 1 1 149883332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.921;LDAF=0.0446;AVGPOST=0.9921;RSQ=0.9359;ERATE=0.0016;THETA=0.0115;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149883349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.915;LDAF=0.8112;AVGPOST=0.9761;RSQ=0.9339;ERATE=0.0015;THETA=0.0112;AC=1777;AN=2184 GT:DS:GL:BD 0.81364471 1 1 149883361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.771;LDAF=0.0147;AVGPOST=0.9939;RSQ=0.8405;ERATE=0.0003;THETA=0.0098;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149883367 . AGT A 206 PASS INDEL;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0047;AVGPOST=0.9972;RSQ=0.7501;ERATE=0.0012;THETA=0.0167;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149883395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149883396 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149883407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7443;ERATE=0.0004;THETA=0.0079;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149883410 . G GT 37985 PASS INDEL;BAVGPOST=0.879;BRSQ=0.751;LDAF=0.5870;AVGPOST=0.8707;RSQ=0.7872;ERATE=0.0134;THETA=0.0027;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 149883435 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.540;LDAF=0.0712;AVGPOST=0.9577;RSQ=0.7653;ERATE=0.0015;THETA=0.0115;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149883453 . A AT 124 PASS INDEL;BAVGPOST=0.964;BRSQ=0.237;LDAF=0.0348;AVGPOST=0.9441;RSQ=0.2640;ERATE=0.0025;THETA=0.0079;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149883464 rs4002347 G GTTATC 6904 PASS INDEL;BAVGPOST=0.595;BRSQ=0.386;LDAF=0.5338;AVGPOST=0.7321;RSQ=0.6465;ERATE=0.0018;THETA=0.0059;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 149883465 . A ATCT 4125 PASS INDEL;BAVGPOST=0.586;BRSQ=0.346;LDAF=0.4057;AVGPOST=0.6887;RSQ=0.5164;ERATE=0.0065;THETA=0.0130;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 149883468 rs67517894 A AT 10944 PASS INDEL;BAVGPOST=0.786;BRSQ=0.516;LDAF=0.2388;AVGPOST=0.8348;RSQ=0.6679;ERATE=0.0057;THETA=0.0038;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 149883470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.804;BRSQ=0.565;LDAF=0.7545;AVGPOST=0.8161;RSQ=0.6521;ERATE=0.0054;THETA=0.0050;AC=1758;AN=2184 GT:DS:GL:BD 0.80494505 1 1 149883472 . GGT G 504 PASS INDEL;BAVGPOST=0.992;BRSQ=0.686;LDAF=0.0140;AVGPOST=0.9882;RSQ=0.6529;ERATE=0.0031;THETA=0.0089;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149883492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.826;LDAF=0.0321;AVGPOST=0.9871;RSQ=0.8677;ERATE=0.0007;THETA=0.0071;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149883493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.853;LDAF=0.7801;AVGPOST=0.9463;RSQ=0.8810;ERATE=0.0015;THETA=0.0083;AC=1708;AN=2184 GT:DS:GL:BD 0.78205127 1 1 149883509 rs10557215 CCT C 4793 PASS INDEL;BAVGPOST=0.953;BRSQ=0.747;LDAF=0.0949;AVGPOST=0.9578;RSQ=0.8100;ERATE=0.0077;THETA=0.0186;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 149883532 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1305;AVGPOST=0.9855;RSQ=0.9459;ERATE=0.0006;THETA=0.0139;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 149883535 . ACT A 5324 PASS INDEL;BAVGPOST=0.964;BRSQ=0.815;LDAF=0.1064;AVGPOST=0.9626;RSQ=0.8517;ERATE=0.0026;THETA=0.0177;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 149883558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.963;LDAF=0.1642;AVGPOST=0.9849;RSQ=0.9537;ERATE=0.0008;THETA=0.0259;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 149883563 rs11383402 C CT 3114 PASS INDEL;BAVGPOST=0.957;BRSQ=0.738;LDAF=0.1099;AVGPOST=0.9405;RSQ=0.7270;ERATE=0.0328;THETA=0.0135;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 149883578 . TATC T 4197 PASS INDEL;BAVGPOST=0.992;BRSQ=0.891;LDAF=0.0331;AVGPOST=0.9918;RSQ=0.9114;ERATE=0.0006;THETA=0.0030;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149883584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.896;LDAF=0.0340;AVGPOST=0.9935;RSQ=0.9302;ERATE=0.0005;THETA=0.0021;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149883598 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149883606 . CAG C 27671 PASS INDEL;BAVGPOST=0.946;BRSQ=0.831;LDAF=0.2706;AVGPOST=0.9516;RSQ=0.8690;ERATE=0.0106;THETA=0.0090;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 149883664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.578;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5116;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149883755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6412;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149883756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0832;AVGPOST=0.9965;RSQ=0.9843;ERATE=0.0004;THETA=0.0008;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 149883892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6632;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149883973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0047;AVGPOST=0.9977;RSQ=0.7899;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149884056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149884078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149884088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149884374 . A AAG 247 PASS INDEL;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0027;AVGPOST=0.9965;RSQ=0.4462;ERATE=0.0009;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149884447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0953;AVGPOST=0.9910;RSQ=0.9615;ERATE=0.0017;THETA=0.0005;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 149884613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0057;AVGPOST=0.9990;RSQ=0.9255;ERATE=0.0004;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149884674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149884708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.9020;ERATE=0.0004;THETA=0.0048;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149884724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0902;AVGPOST=0.9948;RSQ=0.9754;ERATE=0.0004;THETA=0.0009;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 149884757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.869;LDAF=0.0849;AVGPOST=0.9826;RSQ=0.9163;ERATE=0.0015;THETA=0.0048;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 149884787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149884863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0068;AVGPOST=0.9957;RSQ=0.7445;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149884981 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.642;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8934;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149884988 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.905;LDAF=0.0210;AVGPOST=0.9979;RSQ=0.9575;ERATE=0.0004;THETA=0.0035;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149885014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.0877;AVGPOST=0.9974;RSQ=0.9887;ERATE=0.0003;THETA=0.0008;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 149885024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9337;ERATE=0.0004;THETA=0.0031;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149885110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.5565;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149885271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0381;AVGPOST=0.9985;RSQ=0.9820;ERATE=0.0006;THETA=0.0015;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 149885340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6022;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149885390 rs3841267 CCAGA C 137 PASS INDEL;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.5907;ERATE=0.0005;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149885423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0105;AVGPOST=0.9979;RSQ=0.9141;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149885431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.562;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.5954;ERATE=0.0006;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149885664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2141;AVGPOST=0.9929;RSQ=0.9842;ERATE=0.0007;THETA=0.0007;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 149885808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0496;AVGPOST=0.9989;RSQ=0.9900;ERATE=0.0004;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 149885876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0042;AVGPOST=0.9966;RSQ=0.6569;ERATE=0.0010;THETA=0.0033;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149885945 rs34808189 TCCA T 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7490;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149885991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.900;LDAF=0.0234;AVGPOST=0.9956;RSQ=0.9257;ERATE=0.0004;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 149886118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0089;AVGPOST=0.9984;RSQ=0.9368;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149886134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0052;AVGPOST=0.9979;RSQ=0.8298;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149886138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149886228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0428;AVGPOST=0.9990;RSQ=0.9902;ERATE=0.0003;THETA=0.0009;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 149886255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0405;AVGPOST=0.9975;RSQ=0.9780;ERATE=0.0004;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 149886493 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1988;AVGPOST=0.9955;RSQ=0.9894;ERATE=0.0008;THETA=0.0041;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 149886549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6955;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149886651 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0524;AVGPOST=0.9986;RSQ=0.9897;ERATE=0.0003;THETA=0.0011;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 149886656 . GC G 645 PASS INDEL;BAVGPOST=0.967;BRSQ=0.862;LDAF=0.1239;AVGPOST=0.9717;RSQ=0.9127;ERATE=0.0016;THETA=0.0018;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 149886659 . CCT C 2543 PASS INDEL;BAVGPOST=0.976;BRSQ=0.770;LDAF=0.0559;AVGPOST=0.9793;RSQ=0.8599;ERATE=0.0010;THETA=0.0018;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 149886663 rs111818913 CT C 5191 PASS INDEL;BAVGPOST=0.985;BRSQ=0.941;LDAF=0.1347;AVGPOST=0.9931;RSQ=0.9778;ERATE=0.0007;THETA=0.0011;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 149886664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149886830 . GT G 1108 PASS INDEL;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0105;AVGPOST=0.9988;RSQ=0.9480;ERATE=0.0004;THETA=0.0024;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149886847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0083;AVGPOST=0.9939;RSQ=0.6937;ERATE=0.0007;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149886984 . CT C 650 PASS INDEL;BAVGPOST=0.993;BRSQ=0.598;LDAF=0.0095;AVGPOST=0.9906;RSQ=0.5755;ERATE=0.0012;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149887007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.863;LDAF=0.0466;AVGPOST=0.9824;RSQ=0.8544;ERATE=0.0009;THETA=0.0016;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149887124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8334;ERATE=0.0005;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149887150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0463;AVGPOST=0.9922;RSQ=0.9367;ERATE=0.0009;THETA=0.0018;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149887177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0110;AVGPOST=0.9937;RSQ=0.7722;ERATE=0.0006;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149887188 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.938;LDAF=0.1648;AVGPOST=0.9762;RSQ=0.9397;ERATE=0.0024;THETA=0.0013;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 149887207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.931;LDAF=0.0474;AVGPOST=0.9812;RSQ=0.8370;ERATE=0.0012;THETA=0.0027;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 149887307 rs71768002 AGCCGCG A 760 PASS INDEL;BAVGPOST=0.989;BRSQ=0.868;LDAF=0.0585;AVGPOST=0.9714;RSQ=0.7758;ERATE=0.0020;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 149887339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6169;ERATE=0.0009;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149887458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149887585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149887588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149887615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149887649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149887653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149887656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149887663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1409;AVGPOST=0.9990;RSQ=0.9965;ERATE=0.0005;THETA=0.0020;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 149887689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149887705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149887706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8516;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149887783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0432;AVGPOST=0.9989;RSQ=0.9901;ERATE=0.0003;THETA=0.0009;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 149888031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6007;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149888189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0085;AVGPOST=0.9991;RSQ=0.9606;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149888234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149888247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7377;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149888277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149888280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9051;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149888334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149888440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149888628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149888635 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9445;ERATE=0.0003;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149888659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149888696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9754;ERATE=0.0003;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149888697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149888733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149888734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149888737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7791;ERATE=0.0004;THETA=0.0137;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149888916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0066;AVGPOST=0.9971;RSQ=0.8118;ERATE=0.0009;THETA=0.0016;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149888967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.874;LDAF=0.3433;AVGPOST=0.9169;RSQ=0.8640;ERATE=0.0274;THETA=0.0062;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 149888974 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.859;LDAF=0.0617;AVGPOST=0.9808;RSQ=0.8766;ERATE=0.0015;THETA=0.0170;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 149888978 . T TG 116 PASS INDEL;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0064;AVGPOST=0.9932;RSQ=0.6255;ERATE=0.0007;THETA=0.0126;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149889040 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.884;LDAF=0.0856;AVGPOST=0.9685;RSQ=0.8536;ERATE=0.0037;THETA=0.0102;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 149889043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0211;AVGPOST=0.9956;RSQ=0.9196;ERATE=0.0006;THETA=0.0016;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149889088 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.772;LDAF=0.0091;AVGPOST=0.9929;RSQ=0.7207;ERATE=0.0007;THETA=0.0053;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149889106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.2823;ERATE=0.0007;THETA=0.0118;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149889123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.618;LDAF=0.0048;AVGPOST=0.9951;RSQ=0.5798;ERATE=0.0011;THETA=0.0064;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149889167 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.520;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3268;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149889252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.797;LDAF=0.0127;AVGPOST=0.9922;RSQ=0.7980;ERATE=0.0003;THETA=0.0099;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149889271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3828;ERATE=0.0005;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149889275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3884;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149889381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.783;LDAF=0.0273;AVGPOST=0.9890;RSQ=0.8381;ERATE=0.0016;THETA=0.0196;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149889421 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.843;LDAF=0.4714;AVGPOST=0.9064;RSQ=0.8638;ERATE=0.0366;THETA=0.0069;AC=1025;AN=2184 GT:DS:GL:BD 0.46932235 0 1 149889433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.890;LDAF=0.2536;AVGPOST=0.9518;RSQ=0.9106;ERATE=0.0125;THETA=0.0143;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 149889456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149889607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0120;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149889674 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.741;LDAF=0.0389;AVGPOST=0.9836;RSQ=0.8372;ERATE=0.0004;THETA=0.0010;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149889771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.623;LDAF=0.0042;AVGPOST=0.9943;RSQ=0.4404;ERATE=0.0006;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149889783 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.539;LDAF=0.0083;AVGPOST=0.9930;RSQ=0.6759;ERATE=0.0012;THETA=0.0096;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149889824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.511;LDAF=0.0149;AVGPOST=0.9838;RSQ=0.5720;ERATE=0.0009;THETA=0.0017;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149889951 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.447;LDAF=0.0041;AVGPOST=0.9932;RSQ=0.3953;ERATE=0.0008;THETA=0.0100;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149889962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.917;LDAF=0.0300;AVGPOST=0.9952;RSQ=0.9381;ERATE=0.0007;THETA=0.0176;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149889991 . C CA 7589 PASS INDEL;BAVGPOST=0.975;BRSQ=0.816;LDAF=0.0621;AVGPOST=0.9769;RSQ=0.8503;ERATE=0.0012;THETA=0.0010;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 149890019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0089;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149890049 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.553;LDAF=0.0132;AVGPOST=0.9869;RSQ=0.5937;ERATE=0.0011;THETA=0.0042;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149890124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.811;LDAF=0.1541;AVGPOST=0.9182;RSQ=0.7731;ERATE=0.0025;THETA=0.0092;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 149890130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.507;LDAF=0.0044;AVGPOST=0.9957;RSQ=0.5753;ERATE=0.0009;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149890154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.562;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6669;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149890162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0213;AVGPOST=0.9968;RSQ=0.9345;ERATE=0.0005;THETA=0.0020;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149890261 rs77227502 G GT 979 PASS INDEL;BAVGPOST=0.690;BRSQ=0.228;LDAF=0.3008;AVGPOST=0.6731;RSQ=0.3363;ERATE=0.0353;THETA=0.0045;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 149890374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.701;LDAF=0.0287;AVGPOST=0.9888;RSQ=0.8551;ERATE=0.0007;THETA=0.0027;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149890451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.592;LDAF=0.0179;AVGPOST=0.9884;RSQ=0.7261;ERATE=0.0007;THETA=0.0047;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149890480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149890714 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8493;ERATE=0.0003;THETA=0.0066;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149890763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6731;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149890903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149890963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.854;LDAF=0.0168;AVGPOST=0.9955;RSQ=0.9008;ERATE=0.0005;THETA=0.0025;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149891099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149891118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.942;LDAF=0.1165;AVGPOST=0.9857;RSQ=0.9492;ERATE=0.0004;THETA=0.0017;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 149891165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.955;LDAF=0.1154;AVGPOST=0.9896;RSQ=0.9600;ERATE=0.0006;THETA=0.0018;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 149891194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.798;LDAF=0.0065;AVGPOST=0.9971;RSQ=0.8243;ERATE=0.0005;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149891220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5752;ERATE=0.0004;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149891263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0081;AVGPOST=0.9982;RSQ=0.9008;ERATE=0.0005;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149891305 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.950;LDAF=0.1074;AVGPOST=0.9898;RSQ=0.9598;ERATE=0.0004;THETA=0.0011;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149891329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.950;LDAF=0.1072;AVGPOST=0.9898;RSQ=0.9604;ERATE=0.0004;THETA=0.0018;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149891330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149891407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149891476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8830;ERATE=0.0004;THETA=0.0047;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149891497 . CGAGTG C 212 PASS INDEL;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5649;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149891532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.940;LDAF=0.1165;AVGPOST=0.9835;RSQ=0.9404;ERATE=0.0007;THETA=0.0017;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 149891572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.3929;ERATE=0.0009;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149891635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.783;LDAF=0.0071;AVGPOST=0.9979;RSQ=0.8788;ERATE=0.0005;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149891645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.395;LDAF=0.0071;AVGPOST=0.9923;RSQ=0.5570;ERATE=0.0009;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149891694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.942;LDAF=0.0276;AVGPOST=0.9934;RSQ=0.9034;ERATE=0.0007;THETA=0.0122;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149891711 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5824;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149891814 . T TTG 17 PASS INDEL;BAVGPOST=0.901;BRSQ=0.043;LDAF=0.1374;AVGPOST=0.7869;RSQ=0.2782;ERATE=0.0105;THETA=0.0067;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 149891857 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.822;BRSQ=0.651;LDAF=0.3233;AVGPOST=0.8459;RSQ=0.7318;ERATE=0.0103;THETA=0.0018;AC=715;AN=2184 GT:DS:GL:BD 0.32738096 0 1 149891893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.450;LDAF=0.0442;AVGPOST=0.9612;RSQ=0.6618;ERATE=0.0010;THETA=0.0026;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 149891985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.638;LDAF=0.0669;AVGPOST=0.9465;RSQ=0.6657;ERATE=0.0037;THETA=0.0054;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 149892002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.902;LDAF=0.2915;AVGPOST=0.9518;RSQ=0.9208;ERATE=0.0004;THETA=0.0021;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 149892030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.726;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7386;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149892031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.904;LDAF=0.2854;AVGPOST=0.9504;RSQ=0.9173;ERATE=0.0005;THETA=0.0063;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 149892033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7838;ERATE=0.0003;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149892132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7813;ERATE=0.0004;THETA=0.0059;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149892159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0041;AVGPOST=0.9954;RSQ=0.5227;ERATE=0.0010;THETA=0.0067;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149892167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.6258;ERATE=0.0004;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149892173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4664;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149892183 . T TC 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5699;ERATE=0.0005;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149892230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0104;AVGPOST=0.9961;RSQ=0.8653;ERATE=0.0003;THETA=0.0043;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149892343 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.805;LDAF=0.0795;AVGPOST=0.9745;RSQ=0.8704;ERATE=0.0005;THETA=0.0052;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 149892380 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0150;AVGPOST=0.9969;RSQ=0.9083;ERATE=0.0005;THETA=0.0021;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149892387 . C CG 34 PASS INDEL;BAVGPOST=0.962;BRSQ=0.184;LDAF=0.0826;AVGPOST=0.8814;RSQ=0.3761;ERATE=0.0069;THETA=0.0041;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 149892503 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.876;LDAF=0.1660;AVGPOST=0.9559;RSQ=0.8817;ERATE=0.0025;THETA=0.0057;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 149892504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6173;ERATE=0.0006;THETA=0.0180;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149892515 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.564;LDAF=0.0039;AVGPOST=0.9960;RSQ=0.5998;ERATE=0.0007;THETA=0.0121;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149892544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4196;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149892561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.524;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5788;ERATE=0.0007;THETA=0.0098;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149892625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.503;LDAF=0.0050;AVGPOST=0.9954;RSQ=0.6187;ERATE=0.0009;THETA=0.0083;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149892649 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.871;LDAF=0.1562;AVGPOST=0.9530;RSQ=0.8673;ERATE=0.0034;THETA=0.0186;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 149892678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.770;LDAF=0.0114;AVGPOST=0.9948;RSQ=0.8156;ERATE=0.0006;THETA=0.0134;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149892711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.667;LDAF=0.0061;AVGPOST=0.9948;RSQ=0.6566;ERATE=0.0007;THETA=0.0098;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149892771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4859;ERATE=0.0004;THETA=0.0198;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149892851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0206;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149892927 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.918;LDAF=0.0354;AVGPOST=0.9908;RSQ=0.9006;ERATE=0.0046;THETA=0.0138;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149892945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0097;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149892946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7846;ERATE=0.0003;THETA=0.0194;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149893009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8335;ERATE=0.0003;THETA=0.0208;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149893031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0003;THETA=0.0097;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149893071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0005;THETA=0.0245;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149893092 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.917;LDAF=0.1566;AVGPOST=0.9725;RSQ=0.9224;ERATE=0.0100;THETA=0.0180;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 149893135 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8440;ERATE=0.0003;THETA=0.0121;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149893191 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8451;ERATE=0.0003;THETA=0.0027;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149893372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3785;ERATE=0.0004;THETA=0.0095;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149893377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.942;LDAF=0.0711;AVGPOST=0.9867;RSQ=0.9391;ERATE=0.0007;THETA=0.0148;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 149893456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.510;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5193;ERATE=0.0005;THETA=0.0113;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149893457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0004;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149893469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.922;LDAF=0.7481;AVGPOST=0.9519;RSQ=0.9093;ERATE=0.0048;THETA=0.0158;AC=1649;AN=2184 GT:DS:GL:BD 0.75503665 1 1 149893490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.743;LDAF=0.0061;AVGPOST=0.9943;RSQ=0.6633;ERATE=0.0006;THETA=0.0022;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149893494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0004;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149893574 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.959;LDAF=0.5120;AVGPOST=0.9709;RSQ=0.9583;ERATE=0.0015;THETA=0.0024;AC=1117;AN=2184 GT:DS:GL:BD 0.51144689 1 1 149893582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8034;ERATE=0.0003;THETA=0.0042;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149893620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8337;ERATE=0.0005;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149893641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0078;AVGPOST=0.9981;RSQ=0.9060;ERATE=0.0004;THETA=0.0033;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149893698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.959;LDAF=0.5160;AVGPOST=0.9771;RSQ=0.9683;ERATE=0.0011;THETA=0.0049;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 149893714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149893737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.946;LDAF=0.0555;AVGPOST=0.9912;RSQ=0.9465;ERATE=0.0007;THETA=0.0027;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 149893783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.728;LDAF=0.0075;AVGPOST=0.9962;RSQ=0.7859;ERATE=0.0011;THETA=0.0084;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149893847 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.8924;AVGPOST=0.9931;RSQ=0.9728;ERATE=0.0007;THETA=0.0035;AC=1953;AN=2184 GT:DS:GL:BD 0.89423078 1 1 149893870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.903;LDAF=0.0355;AVGPOST=0.9902;RSQ=0.8974;ERATE=0.0007;THETA=0.0007;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 149893875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.927;LDAF=0.7523;AVGPOST=0.9702;RSQ=0.9389;ERATE=0.0019;THETA=0.0024;AC=1655;AN=2184 GT:DS:GL:BD 0.75778389 1 1 149893908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.8961;AVGPOST=0.9958;RSQ=0.9831;ERATE=0.0004;THETA=0.0007;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 149893946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149894047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.963;LDAF=0.8930;AVGPOST=0.9928;RSQ=0.9743;ERATE=0.0009;THETA=0.0145;AC=1953;AN=2184 GT:DS:GL:BD 0.89423078 1 1 149894151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0126;AVGPOST=0.9976;RSQ=0.9288;ERATE=0.0003;THETA=0.0035;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149894155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7109;ERATE=0.0004;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149894189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.853;LDAF=0.0864;AVGPOST=0.9673;RSQ=0.8454;ERATE=0.0033;THETA=0.0019;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 149894229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.968;LDAF=0.0664;AVGPOST=0.9950;RSQ=0.9692;ERATE=0.0006;THETA=0.0025;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 149894232 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.871;LDAF=0.4230;AVGPOST=0.9079;RSQ=0.8720;ERATE=0.0222;THETA=0.0007;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 149894239 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8558;ERATE=0.0005;THETA=0.0052;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149894495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.578;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6066;ERATE=0.0006;THETA=0.0116;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149894507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0108;AVGPOST=0.9975;RSQ=0.9031;ERATE=0.0005;THETA=0.0026;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149894613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.907;LDAF=0.0327;AVGPOST=0.9895;RSQ=0.8842;ERATE=0.0004;THETA=0.0027;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149894683 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8529;ERATE=0.0004;THETA=0.0046;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149894832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.822;LDAF=0.0244;AVGPOST=0.9918;RSQ=0.8722;ERATE=0.0008;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149894885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7590;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149894912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7377;ERATE=0.0005;THETA=0.0084;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149894918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.7965;ERATE=0.0003;THETA=0.0061;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149894920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149894960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.965;LDAF=0.0505;AVGPOST=0.9972;RSQ=0.9763;ERATE=0.0006;THETA=0.0068;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 149895004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.942;LDAF=0.0430;AVGPOST=0.9877;RSQ=0.8894;ERATE=0.0004;THETA=0.0027;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 149895117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5432;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149895212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9218;ERATE=0.0003;THETA=0.0033;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149895233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9018;AVGPOST=0.9982;RSQ=0.9918;ERATE=0.0004;THETA=0.0003;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 149895257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9366;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149895294 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5052;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149895312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9014;AVGPOST=0.9983;RSQ=0.9924;ERATE=0.0004;THETA=0.0015;AC=1969;AN=2184 GT:DS:GL:BD 0.90155679 1 1 149895316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0185;AVGPOST=0.9994;RSQ=0.9861;ERATE=0.0003;THETA=0.0014;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149895327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5367;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149895416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149895429 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7976;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149895450 . AAAAT A 205 PASS INDEL;BAVGPOST=0.996;BRSQ=0.620;LDAF=0.0079;AVGPOST=0.9913;RSQ=0.5677;ERATE=0.0018;THETA=0.0045;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149895683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6987;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149895717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9479;ERATE=0.0003;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149895878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.962;LDAF=0.8928;AVGPOST=0.9927;RSQ=0.9719;ERATE=0.0006;THETA=0.0016;AC=1953;AN=2184 GT:DS:GL:BD 0.89423078 1 1 149895962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.956;LDAF=0.8691;AVGPOST=0.9795;RSQ=0.9333;ERATE=0.0050;THETA=0.0002;AC=1910;AN=2184 GT:DS:GL:BD 0.87454212 1 1 149895982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9388;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149895993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149896072 . A AT 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5452;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149896081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.952;LDAF=0.0285;AVGPOST=0.9934;RSQ=0.9103;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149896139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9651;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149896265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149896298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0004;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149896503 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9856;ERATE=0.0003;THETA=0.0016;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149896538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4750;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149896563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0518;AVGPOST=0.9960;RSQ=0.9708;ERATE=0.0004;THETA=0.0003;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 149896629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149897067 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8137;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149897160 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149897205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6767;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149897274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0005;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149897386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0600;AVGPOST=0.9952;RSQ=0.9693;ERATE=0.0006;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 149897394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.734;LDAF=0.0074;AVGPOST=0.9947;RSQ=0.7525;ERATE=0.0007;THETA=0.0042;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149897419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.7809;ERATE=0.0008;THETA=0.0064;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149897616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0087;AVGPOST=0.9969;RSQ=0.8561;ERATE=0.0005;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149897692 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.7794;AVGPOST=0.9925;RSQ=0.9843;ERATE=0.0007;THETA=0.0005;AC=1705;AN=2184 GT:DS:GL:BD 0.78067768 1 1 149897772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.8980;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149897840 . GCC G 3109 PASS INDEL;BAVGPOST=0.986;BRSQ=0.905;LDAF=0.0458;AVGPOST=0.9918;RSQ=0.9380;ERATE=0.0006;THETA=0.0009;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 149897890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0694;AVGPOST=0.9958;RSQ=0.9766;ERATE=0.0006;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 149897895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.888;LDAF=0.5579;AVGPOST=0.8713;RSQ=0.8378;ERATE=0.0094;THETA=0.0007;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 149898000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.867;LDAF=0.8879;AVGPOST=0.9693;RSQ=0.8900;ERATE=0.0017;THETA=0.0006;AC=1956;AN=2184 GT:DS:GL:BD 0.89560437 1 1 149898002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9013;AVGPOST=0.9935;RSQ=0.9737;ERATE=0.0006;THETA=0.0013;AC=1970;AN=2184 GT:DS:GL:BD 0.90201467 1 1 149898162 . CT C 236 PASS INDEL;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0079;AVGPOST=0.9974;RSQ=0.8676;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149898205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8861;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149898259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149898289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.1596;AVGPOST=0.9947;RSQ=0.9873;ERATE=0.0004;THETA=0.0008;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 149898382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9031;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149898440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0481;AVGPOST=0.9992;RSQ=0.9934;ERATE=0.0004;THETA=0.0033;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 149898576 . G GGC 56850 PASS INDEL;BAVGPOST=0.989;BRSQ=0.967;LDAF=0.8377;AVGPOST=0.9909;RSQ=0.9748;ERATE=0.0007;THETA=0.0005;AC=1829;AN=2184 GT:DS:GL:BD 0.83745420 1 1 149898603 rs70938088 C CA 84109 PASS INDEL;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.9041;AVGPOST=0.9978;RSQ=0.9896;ERATE=0.0005;THETA=0.0010;AC=1974;AN=2184 GT:DS:GL:BD 0.90384614 1 1 149898605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149898664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149898845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0873;AVGPOST=0.9969;RSQ=0.9846;ERATE=0.0005;THETA=0.0005;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 149898864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0155;AVGPOST=0.9983;RSQ=0.9564;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149898928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0653;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0002;THETA=0.0009;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 149898995 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149899010 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149899082 . CACAT C 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149899152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0649;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0002;THETA=0.0071;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 149899162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8843;ERATE=0.0002;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149899167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7818;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149899196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0656;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0002;THETA=0.0008;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 149899335 . TACTC T 1109 PASS INDEL;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0077;AVGPOST=0.9979;RSQ=0.9041;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149899335 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149899394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8331;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149899401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0002;THETA=0.0017;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 149899565 . TTC T 30308 PASS INDEL;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.4369;AVGPOST=0.9908;RSQ=0.9860;ERATE=0.0003;THETA=0.0006;AC=953;AN=2184 GT:DS:GL:BD 0.43635532 0 1 149899583 rs56372504 TCTCA T 88336 PASS INDEL;BAVGPOST=0.987;BRSQ=0.980;LDAF=0.4387;AVGPOST=0.9910;RSQ=0.9859;ERATE=0.0002;THETA=0.0081;AC=959;AN=2184 GT:DS:GL:BD 0.43910256 0 1 149899586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6434;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149899806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0162;AVGPOST=0.9992;RSQ=0.9756;ERATE=0.0003;THETA=0.0093;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149899831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9735;ERATE=0.0003;THETA=0.0018;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149899847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.2216;AVGPOST=0.9903;RSQ=0.9806;ERATE=0.0017;THETA=0.0043;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 149899989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7068;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149900024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9997;AVGPOST=0.9994;RSQ=0.1110;ERATE=0.0003;THETA=0.0094;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 149900075 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7826;ERATE=0.0005;THETA=0.0136;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149900142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0002;THETA=0.0157;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149900223 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0168;AVGPOST=0.9994;RSQ=0.9851;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149900318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0419;AVGPOST=0.9982;RSQ=0.9830;ERATE=0.0003;THETA=0.0112;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 149900382 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0118;AVGPOST=0.9978;RSQ=0.9293;ERATE=0.0003;THETA=0.0040;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149900584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149900590 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9567;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149900659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.995;LDAF=0.4174;AVGPOST=0.9932;RSQ=0.9894;ERATE=0.0006;THETA=0.0074;AC=912;AN=2184 GT:DS:GL:BD 0.41758242 0 1 149900685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.1249;AVGPOST=0.9983;RSQ=0.9935;ERATE=0.0004;THETA=0.0006;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 149900699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.6997;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149900807 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149900928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0397;AVGPOST=0.9946;RSQ=0.9462;ERATE=0.0007;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 149900930 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0060;AVGPOST=0.9950;RSQ=0.6707;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149900936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.477;LDAF=0.0028;AVGPOST=0.9966;RSQ=0.5276;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149901017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0324;AVGPOST=0.9990;RSQ=0.9877;ERATE=0.0004;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149901064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6356;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149901065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149901145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8337;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149901158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9705;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149901160 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9503;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149901268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4082;AVGPOST=0.9976;RSQ=0.9959;ERATE=0.0009;THETA=0.0005;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 149901464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6812;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149901507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9832;ERATE=0.0002;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149901527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7062;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 149901605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4667;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149901606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1249;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 149901644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0103;AVGPOST=0.9945;RSQ=0.7895;ERATE=0.0008;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149901771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6188;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149901871 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5522;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=1207;AN=2184 GT:DS:GL:BD 0.55265570 1 1 149901889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7706;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149902005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7848;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149902081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0751;AVGPOST=0.9982;RSQ=0.9905;ERATE=0.0002;THETA=0.0003;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 149902156 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0321;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0002;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149902279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149902444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149902546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5521;AVGPOST=0.9951;RSQ=0.9927;ERATE=0.0017;THETA=0.0003;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 149902573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0072;AVGPOST=0.9982;RSQ=0.8902;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149902735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0468;AVGPOST=0.9939;RSQ=0.9496;ERATE=0.0008;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 149902805 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.577;LDAF=0.0260;AVGPOST=0.9903;RSQ=0.8627;ERATE=0.0005;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149902904 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.398;LDAF=0.0288;AVGPOST=0.9793;RSQ=0.7220;ERATE=0.0016;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149902928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.761;LDAF=0.0058;AVGPOST=0.9940;RSQ=0.5769;ERATE=0.0009;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149902930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.694;LDAF=0.0771;AVGPOST=0.9845;RSQ=0.9223;ERATE=0.0003;THETA=0.0012;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 149903019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.917;LDAF=0.0452;AVGPOST=0.9946;RSQ=0.9535;ERATE=0.0007;THETA=0.0002;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149903020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.488;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6381;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149903053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.963;LDAF=0.1287;AVGPOST=0.9946;RSQ=0.9823;ERATE=0.0004;THETA=0.0006;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 149903065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5333;AVGPOST=0.9949;RSQ=0.9928;ERATE=0.0005;THETA=0.0003;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 149903077 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.747;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8110;ERATE=0.0003;THETA=0.0064;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149903132 . CAG C 606 PASS INDEL;BAVGPOST=0.994;BRSQ=0.770;LDAF=0.0093;AVGPOST=0.9956;RSQ=0.8117;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149903211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0429;AVGPOST=0.9979;RSQ=0.9793;ERATE=0.0007;THETA=0.0002;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 149903260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9361;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149903332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.902;LDAF=0.0119;AVGPOST=0.9980;RSQ=0.9274;ERATE=0.0002;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149903417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0825;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 149903451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0176;AVGPOST=0.9975;RSQ=0.9506;ERATE=0.0003;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149903465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149903484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0122;AVGPOST=0.9975;RSQ=0.9190;ERATE=0.0006;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149903485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7075;AVGPOST=0.9972;RSQ=0.9945;ERATE=0.0006;THETA=0.0046;AC=1546;AN=2184 GT:DS:GL:BD 0.70787543 1 1 149903543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7125;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 149903633 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9903;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149903640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9807;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149903655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7665;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149903737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8864;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149903748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9165;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149903784 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0869;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0002;THETA=0.0004;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 149903809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149903823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0160;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0002;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149903833 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0869;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 149903837 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.6770;ERATE=0.0018;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149903900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.4175;AVGPOST=0.9931;RSQ=0.9880;ERATE=0.0004;THETA=0.0005;AC=913;AN=2184 GT:DS:GL:BD 0.41804031 0 1 149903945 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7247;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149903985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1194;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0006;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 149904011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6762;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149904105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7761;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 149904208 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149904241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149904271 . A AC 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149904341 rs60526670 GA G 42 PASS INDEL;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0033;AVGPOST=0.9970;RSQ=0.6583;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149904445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1192;AVGPOST=0.9991;RSQ=0.9965;ERATE=0.0004;THETA=0.0006;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 149904526 . TC T 354 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8806;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149904593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.4325;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149904648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0895;AVGPOST=0.9957;RSQ=0.9759;ERATE=0.0004;THETA=0.0005;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 149904756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0138;AVGPOST=0.9986;RSQ=0.9621;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149904813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0322;AVGPOST=0.9967;RSQ=0.9629;ERATE=0.0004;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 149904850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8197;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149904913 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8898;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149905007 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149905094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7386;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149905184 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.836;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8509;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149905223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.4645;ERATE=0.0013;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149905384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9674;ERATE=0.0004;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149905468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149905606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1239;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0012;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 149905720 . T TA 264 PASS INDEL;BAVGPOST=0.964;BRSQ=0.512;LDAF=0.0352;AVGPOST=0.9654;RSQ=0.6339;ERATE=0.0043;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149905769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6681;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149905780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7221;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149905870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6115;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149905893 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149906011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149906048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1165;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 149906084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8284;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149906255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8145;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149906271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149906328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5893;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149906329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9617;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149906375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1165;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 149906392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8061;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149906437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8931;AVGPOST=0.9986;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 149906513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149906681 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6283;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149906684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8040;ERATE=0.0009;THETA=0.0059;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149906698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6211;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149906749 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8933;AVGPOST=0.9984;RSQ=0.9937;ERATE=0.0004;THETA=0.0053;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 149906869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8959;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149906920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.3933;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0292;AVGPOST=0.9987;RSQ=0.9805;ERATE=0.0006;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149907196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6274;ERATE=0.0003;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149907363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7798;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149907441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8962;AVGPOST=0.9966;RSQ=0.9860;ERATE=0.0003;THETA=0.0003;AC=1957;AN=2184 GT:DS:GL:BD 0.89606225 1 1 149907453 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907586 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0086;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149907725 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907747 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149907768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1240;AVGPOST=0.9977;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 149907819 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149907966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8859;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149907976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0344;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 149908009 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908017 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6781;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149908055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0399;AVGPOST=0.9992;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 149908062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0042;AVGPOST=0.9986;RSQ=0.8899;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149908065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908150 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7971;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149908161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6925;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908196 . C CG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8465;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149908303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149908409 . TG T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908478 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.8167;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149908499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8838;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149908558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0801;AVGPOST=0.9986;RSQ=0.9919;ERATE=0.0004;THETA=0.0003;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 149908568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149908698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1242;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 149908699 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9397;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149908704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6093;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149908710 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1306;AVGPOST=0.9988;RSQ=0.9962;ERATE=0.0004;THETA=0.0007;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 149908728 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1253;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0002;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 149908741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.961;LDAF=0.1287;AVGPOST=0.9912;RSQ=0.9733;ERATE=0.0014;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 149908841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2924;AVGPOST=0.9961;RSQ=0.9925;ERATE=0.0005;THETA=0.0007;AC=639;AN=2184 GT:DS:GL:BD 0.29258242 0 1 149909062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8949;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149909072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5940;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149909097 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149909243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.1003;AVGPOST=0.9957;RSQ=0.9805;ERATE=0.0003;THETA=0.0005;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 149909406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0004;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149909762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0199;AVGPOST=0.9993;RSQ=0.9830;ERATE=0.0004;THETA=0.0022;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149909912 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149910223 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7588;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149910348 . TAATC T 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5149;ERATE=0.0006;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149910350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149910482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6130;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149910568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.512;LDAF=0.0075;AVGPOST=0.9918;RSQ=0.5776;ERATE=0.0011;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149910688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.514;LDAF=0.0074;AVGPOST=0.9915;RSQ=0.5874;ERATE=0.0008;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149910810 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9588;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149910887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0066;AVGPOST=0.9968;RSQ=0.7968;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149910913 . GAA G 1130 PASS INDEL;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0084;AVGPOST=0.9949;RSQ=0.7482;ERATE=0.0008;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149911032 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2935;AVGPOST=0.9946;RSQ=0.9913;ERATE=0.0005;THETA=0.0006;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 149911092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0307;AVGPOST=0.9987;RSQ=0.9790;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 149911337 . CAGCGGGG C 2337 PASS INDEL;BAVGPOST=0.853;BRSQ=0.600;LDAF=0.2572;AVGPOST=0.9019;RSQ=0.8001;ERATE=0.0050;THETA=0.0003;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 149911624 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.603;LDAF=0.0203;AVGPOST=0.9843;RSQ=0.7007;ERATE=0.0016;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149912033 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.977;LDAF=0.2580;AVGPOST=0.9808;RSQ=0.9603;ERATE=0.0019;THETA=0.0006;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 149912143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6927;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149912538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0286;AVGPOST=0.9984;RSQ=0.9808;ERATE=0.0004;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149912583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.744;LDAF=0.0286;AVGPOST=0.9941;RSQ=0.9101;ERATE=0.0010;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149912665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.124;LDAF=0.0414;AVGPOST=0.9492;RSQ=0.5033;ERATE=0.0023;THETA=0.0009;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149913430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.729;LDAF=0.0369;AVGPOST=0.9623;RSQ=0.6264;ERATE=0.0017;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149913715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.884;LDAF=0.8045;AVGPOST=0.9149;RSQ=0.8127;ERATE=0.0115;THETA=0.0029;AC=1796;AN=2184 GT:DS:GL:BD 0.82234430 1 1 149913852 . CG C 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.449;LDAF=0.0081;AVGPOST=0.9909;RSQ=0.5552;ERATE=0.0010;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149913942 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149914155 . T TGC 286 PASS INDEL;BAVGPOST=0.998;BRSQ=0.624;LDAF=0.0035;AVGPOST=0.9956;RSQ=0.5020;ERATE=0.0009;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149914186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9495;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149914232 . CTG C 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4526;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149914235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9787;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149914237 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149914310 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9704;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149914374 . AAAGGGAG A 165 PASS INDEL;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0045;AVGPOST=0.9944;RSQ=0.4746;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149914538 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149914650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0444;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149914719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0005;THETA=0.0031;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149914888 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149914969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149915048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149915098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149915270 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.971;LDAF=0.1786;AVGPOST=0.9927;RSQ=0.9814;ERATE=0.0011;THETA=0.0008;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 149915425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.1063;AVGPOST=0.9980;RSQ=0.9912;ERATE=0.0004;THETA=0.0008;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 149915431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5554;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149915461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0039;AVGPOST=0.9977;RSQ=0.7685;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149915465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1748;AVGPOST=0.9978;RSQ=0.9942;ERATE=0.0003;THETA=0.0004;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 149915570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1070;AVGPOST=0.9990;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 149915716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7917;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149915846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7513;ERATE=0.0004;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149915920 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6956;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149916036 . GTCC G 125 PASS INDEL;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7440;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149916047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8220;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149916057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9404;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149916123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149916370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8880;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149916390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0061;AVGPOST=0.9979;RSQ=0.8611;ERATE=0.0006;THETA=0.0017;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149916462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0064;AVGPOST=0.9971;RSQ=0.8110;ERATE=0.0007;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149916520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0087;AVGPOST=0.9980;RSQ=0.9217;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149916550 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6523;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149916654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0046;AVGPOST=0.9976;RSQ=0.7733;ERATE=0.0005;THETA=0.0028;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149916923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6492;ERATE=0.0004;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149917027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9474;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149917283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149917342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.752;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.6841;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149917436 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0097;AVGPOST=0.9937;RSQ=0.7488;ERATE=0.0013;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149917450 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6997;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149917546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9551;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149917550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7660;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149917571 rs36077910 TATTA T 44820 PASS INDEL;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2624;AVGPOST=0.9824;RSQ=0.9684;ERATE=0.0040;THETA=0.0051;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 149917687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0193;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0004;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149917725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8940;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149917728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8541;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149917732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0063;AVGPOST=0.9981;RSQ=0.8877;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149917767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0075;AVGPOST=0.9987;RSQ=0.9334;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149917802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6680;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149917988 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0177;AVGPOST=0.9953;RSQ=0.8999;ERATE=0.0003;THETA=0.0024;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149918010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0092;AVGPOST=0.9987;RSQ=0.9321;ERATE=0.0005;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149918059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149918066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.7915;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149918123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.850;LDAF=0.0093;AVGPOST=0.9983;RSQ=0.9183;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149918129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6667;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149918131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1223;AVGPOST=0.9983;RSQ=0.9935;ERATE=0.0004;THETA=0.0015;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 149918152 . TGAG T 8115 PASS INDEL;BAVGPOST=0.966;BRSQ=0.937;LDAF=0.2377;AVGPOST=0.9620;RSQ=0.9263;ERATE=0.0044;THETA=0.0004;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 149918241 rs35358983 GAGC G 26566 PASS INDEL;BAVGPOST=0.975;BRSQ=0.952;LDAF=0.2508;AVGPOST=0.9815;RSQ=0.9667;ERATE=0.0007;THETA=0.0004;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 149918242 . GCA G 1627 PASS INDEL;BAVGPOST=0.959;BRSQ=0.902;LDAF=0.2095;AVGPOST=0.9559;RSQ=0.9077;ERATE=0.0008;THETA=0.0003;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 149918247 . CAGT C 5867 PASS INDEL;BAVGPOST=0.970;BRSQ=0.931;LDAF=0.2346;AVGPOST=0.9747;RSQ=0.9513;ERATE=0.0005;THETA=0.0008;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 149918248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149918281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7779;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149918356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149918393 . C CA 1078 PASS INDEL;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0116;AVGPOST=0.9971;RSQ=0.8937;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149918673 . CA C 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149918700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0424;AVGPOST=0.9967;RSQ=0.9742;ERATE=0.0003;THETA=0.0004;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 149918703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7872;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149918922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149918982 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149919062 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9324;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149919113 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149919251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149919446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149919594 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149919614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0177;AVGPOST=0.9986;RSQ=0.9669;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149919639 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6005;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149919643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5486;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149919883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0043;AVGPOST=0.9966;RSQ=0.7051;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149919970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7763;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149919988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0152;AVGPOST=0.9986;RSQ=0.9587;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149920003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.557;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3779;ERATE=0.0007;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149920489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149920516 . TC T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149920877 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7217;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149921016 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6920;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149921018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149921050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9034;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149921071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5508;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149921085 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7865;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149921191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8537;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149921207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0086;AVGPOST=0.9975;RSQ=0.8812;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149921247 . CAAGAA C 2133 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0098;AVGPOST=0.9992;RSQ=0.9634;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149921258 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6548;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149921312 . TTTTG T 19978 PASS INDEL;BAVGPOST=0.974;BRSQ=0.883;LDAF=0.8653;AVGPOST=0.9495;RSQ=0.8387;ERATE=0.0095;THETA=0.0005;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 149921347 . T TG 157 PASS INDEL;BAVGPOST=0.996;BRSQ=0.774;LDAF=0.0111;AVGPOST=0.9936;RSQ=0.7981;ERATE=0.0005;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149921370 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0112;AVGPOST=0.9953;RSQ=0.8457;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149921375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3758;AVGPOST=0.9898;RSQ=0.9867;ERATE=0.0006;THETA=0.0005;AC=824;AN=2184 GT:DS:GL:BD 0.37728938 0 1 149921402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.777;LDAF=0.0092;AVGPOST=0.9967;RSQ=0.8475;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149921530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5496;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149921531 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1556;AVGPOST=0.9963;RSQ=0.9893;ERATE=0.0006;THETA=0.0008;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 149921540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4294;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149921625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149921693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9991;RSQ=0.9651;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149921926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149922090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5387;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149922165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0106;AVGPOST=0.9988;RSQ=0.9502;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149922346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.922;BRSQ=0.861;LDAF=0.5842;AVGPOST=0.8491;RSQ=0.7727;ERATE=0.0162;THETA=0.0033;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 149922530 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0251;AVGPOST=0.9992;RSQ=0.9855;ERATE=0.0004;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 149922719 . AGAGT A 754 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9522;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149922755 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.627;LDAF=0.0063;AVGPOST=0.9933;RSQ=0.6503;ERATE=0.0009;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149922759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149922814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4870;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149922822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5471;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149922888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149923010 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0512;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 149923042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9992;RSQ=0.9676;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149923164 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149923358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.888;LDAF=0.0117;AVGPOST=0.9980;RSQ=0.9444;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149923367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9002;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149923556 rs34335895 A AG 15803 PASS INDEL;BAVGPOST=0.961;BRSQ=0.901;LDAF=0.2188;AVGPOST=0.9898;RSQ=0.9771;ERATE=0.0017;THETA=0.0007;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 149923600 . T TTAAAA 522 PASS INDEL;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0070;AVGPOST=0.9925;RSQ=0.5680;ERATE=0.0013;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149923679 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0230;AVGPOST=0.9987;RSQ=0.9806;ERATE=0.0004;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149923739 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149923788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149923799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1543;AVGPOST=0.9966;RSQ=0.9910;ERATE=0.0004;THETA=0.0006;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 149923918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6885;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149923963 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7862;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149923965 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8494;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149923990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149924210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.757;LDAF=0.0182;AVGPOST=0.9920;RSQ=0.8517;ERATE=0.0009;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149924374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0149;AVGPOST=0.9974;RSQ=0.9445;ERATE=0.0005;THETA=0.0010;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149924389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.500;LDAF=0.0060;AVGPOST=0.9925;RSQ=0.5165;ERATE=0.0010;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149924390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0056;AVGPOST=0.9943;RSQ=0.5903;ERATE=0.0011;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149924476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.8823;ERATE=0.0004;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149924541 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5078;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149924616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8112;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149924632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0434;AVGPOST=0.9979;RSQ=0.9806;ERATE=0.0004;THETA=0.0013;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 149924651 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9598;ERATE=0.0004;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149924662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4437;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149924738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8776;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149924749 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0150;AVGPOST=0.9982;RSQ=0.9644;ERATE=0.0003;THETA=0.0038;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149924860 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149924919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149924925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0133;AVGPOST=0.9994;RSQ=0.9794;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149924971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.836;LDAF=0.0070;AVGPOST=0.9965;RSQ=0.8122;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149925010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0186;AVGPOST=0.9983;RSQ=0.9731;ERATE=0.0003;THETA=0.0013;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149925022 . AC A 171 PASS INDEL;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.5889;ERATE=0.0008;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149925026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.7990;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149925035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7999;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149925189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8881;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149925238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0188;AVGPOST=0.9970;RSQ=0.9528;ERATE=0.0005;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149925249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.8281;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149925392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7317;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149925438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.5347;ERATE=0.0007;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149925681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0025;AVGPOST=0.9972;RSQ=0.4883;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149925739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3905;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149925751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0157;AVGPOST=0.9960;RSQ=0.9193;ERATE=0.0006;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149925802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.6014;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149925887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149925947 . C CCTTT 2287 PASS INDEL;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0179;AVGPOST=0.9959;RSQ=0.9288;ERATE=0.0005;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149925961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149926013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9688;ERATE=0.0003;THETA=0.0020;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149926140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9979;RSQ=0.9631;ERATE=0.0003;THETA=0.0047;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149926247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.8046;ERATE=0.0007;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149926293 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6796;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149926397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149926559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149926567 . TC T 461 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149926607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149926636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9952;RSQ=0.7743;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149926841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3550;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149926870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.7909;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149926901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149926956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.857;LDAF=0.0066;AVGPOST=0.9979;RSQ=0.8606;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149927044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0048;AVGPOST=0.9976;RSQ=0.7995;ERATE=0.0012;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149927102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0192;AVGPOST=0.9984;RSQ=0.9615;ERATE=0.0003;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149927301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8430;ERATE=0.0005;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149927384 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0052;AVGPOST=0.9984;RSQ=0.8613;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149927387 rs57056244 AAC A 14404 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1126;AVGPOST=0.9934;RSQ=0.9739;ERATE=0.0008;THETA=0.0007;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 149927398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4371;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149927430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6799;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149927434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9330;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149927468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149927475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0037;AVGPOST=0.9962;RSQ=0.5713;ERATE=0.0011;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149927499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8096;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149927508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0196;AVGPOST=0.9977;RSQ=0.9485;ERATE=0.0004;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149927512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5388;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149927529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6368;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149927564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0200;AVGPOST=0.9984;RSQ=0.9714;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149927716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.7510;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149927772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1135;AVGPOST=0.9929;RSQ=0.9724;ERATE=0.0005;THETA=0.0011;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 149927812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.964;LDAF=0.2122;AVGPOST=0.9843;RSQ=0.9717;ERATE=0.0009;THETA=0.0011;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 149927862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0126;AVGPOST=0.9965;RSQ=0.8954;ERATE=0.0007;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149927863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0187;AVGPOST=0.9937;RSQ=0.8654;ERATE=0.0006;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149927877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0138;AVGPOST=0.9960;RSQ=0.8832;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149928011 . T TTAA 2156 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0189;AVGPOST=0.9979;RSQ=0.9656;ERATE=0.0005;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149928117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9981;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149928156 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6160;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149928272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.5918;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149928406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7658;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149928415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0053;AVGPOST=0.9973;RSQ=0.8040;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149928441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0107;AVGPOST=0.9975;RSQ=0.8935;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149928479 . T TC 974 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0117;AVGPOST=0.9988;RSQ=0.9551;ERATE=0.0003;THETA=0.0022;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149928485 . C CT 260 PASS INDEL;BAVGPOST=0.992;BRSQ=0.785;LDAF=0.0285;AVGPOST=0.9760;RSQ=0.6574;ERATE=0.0047;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149928487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.646;LDAF=0.0035;AVGPOST=0.9958;RSQ=0.5864;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149928577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.662;LDAF=0.0117;AVGPOST=0.9934;RSQ=0.8074;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149928624 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.876;LDAF=0.0064;AVGPOST=0.9971;RSQ=0.7960;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149928724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0103;AVGPOST=0.9981;RSQ=0.9229;ERATE=0.0005;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149928795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.3250;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149928867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9978;RSQ=0.9089;ERATE=0.0005;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149928980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5137;ERATE=0.0008;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149929031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5621;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.7725;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149929088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929095 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7429;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149929101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7618;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149929118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0187;AVGPOST=0.9983;RSQ=0.9758;ERATE=0.0003;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149929132 . AAAC A 49 PASS INDEL;BAVGPOST=0.987;BRSQ=0.565;LDAF=0.0638;AVGPOST=0.8991;RSQ=0.3340;ERATE=0.0079;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149929139 . C CA 23 PASS INDEL;BAVGPOST=0.952;BRSQ=0.075;LDAF=0.1423;AVGPOST=0.7935;RSQ=0.3498;ERATE=0.0089;THETA=0.0006;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 149929157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.882;LDAF=0.0631;AVGPOST=0.9792;RSQ=0.8752;ERATE=0.0088;THETA=0.0011;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 149929160 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9284;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149929163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8910;ERATE=0.0005;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149929210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9983;RSQ=0.9759;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149929253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0189;AVGPOST=0.9981;RSQ=0.9732;ERATE=0.0003;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149929286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149929337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8076;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=1766;AN=2184 GT:DS:GL:BD 0.80860806 1 1 149929341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149929439 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9603;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149929552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0033;AVGPOST=0.9944;RSQ=0.3675;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0292;AVGPOST=0.9989;RSQ=0.9841;ERATE=0.0004;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149929735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929744 . CA C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929757 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7736;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149929780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4876;AVGPOST=0.9951;RSQ=0.9935;ERATE=0.0006;THETA=0.0019;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 149929911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7533;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149929950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6202;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149930019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9885;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149930052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5627;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0372;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0006;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 149930116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0198;AVGPOST=0.9978;RSQ=0.9572;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149930230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0245;AVGPOST=0.9972;RSQ=0.9556;ERATE=0.0005;THETA=0.0051;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149930242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0285;AVGPOST=0.9983;RSQ=0.9754;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149930306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0212;AVGPOST=0.9987;RSQ=0.9758;ERATE=0.0004;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149930318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4788;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.7470;AVGPOST=0.9861;RSQ=0.9742;ERATE=0.0030;THETA=0.0056;AC=1639;AN=2184 GT:DS:GL:BD 0.75045788 1 1 149930339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149930396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.5540;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149930411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930521 . T TA 58 PASS INDEL;BAVGPOST=0.980;BRSQ=0.479;LDAF=0.0341;AVGPOST=0.9574;RSQ=0.4751;ERATE=0.0099;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149930565 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149930734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.925;LDAF=0.0152;AVGPOST=0.9965;RSQ=0.9073;ERATE=0.0008;THETA=0.0081;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149930798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8088;ERATE=0.0005;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149930811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0046;AVGPOST=0.9970;RSQ=0.7312;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149930869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0081;AVGPOST=0.9970;RSQ=0.8547;ERATE=0.0006;THETA=0.0019;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149930890 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0200;AVGPOST=0.9988;RSQ=0.9699;ERATE=0.0005;THETA=0.0022;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149930907 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8446;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149930958 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8184;ERATE=0.0005;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149930984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8178;AVGPOST=0.9980;RSQ=0.9945;ERATE=0.0004;THETA=0.0005;AC=1786;AN=2184 GT:DS:GL:BD 0.81776559 1 1 149931092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8341;ERATE=0.0004;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149931302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4751;ERATE=0.0005;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149931305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9281;ERATE=0.0004;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149931392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.7328;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0003;THETA=0.0007;AC=1602;AN=2184 GT:DS:GL:BD 0.73351645 1 1 149931408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9434;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149931478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4919;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0004;THETA=0.0002;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 149931568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149931624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149931641 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0391;AVGPOST=0.9994;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 149931688 . GC G 100 PASS INDEL;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6004;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149931749 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8375;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=1830;AN=2184 GT:DS:GL:BD 0.83791208 1 1 149931765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0063;AVGPOST=0.9989;RSQ=0.9398;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149931769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9989;RSQ=0.9753;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149931940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149932072 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2669;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 149932075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2957;AVGPOST=0.9957;RSQ=0.9924;ERATE=0.0006;THETA=0.0004;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 149932267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149932288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0194;AVGPOST=0.9995;RSQ=0.9879;ERATE=0.0004;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149932332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9628;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149932401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9414;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149932482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7352;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149932505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.743;LDAF=0.9323;AVGPOST=0.9502;RSQ=0.7234;ERATE=0.0055;THETA=0.0005;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 149932529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149932574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0578;AVGPOST=0.9953;RSQ=0.9647;ERATE=0.0007;THETA=0.0067;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 149932608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7187;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149932750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0295;AVGPOST=0.9900;RSQ=0.8712;ERATE=0.0018;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149932751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0045;AVGPOST=0.9984;RSQ=0.8393;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149932819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.8420;AVGPOST=0.9952;RSQ=0.9866;ERATE=0.0007;THETA=0.0009;AC=1839;AN=2184 GT:DS:GL:BD 0.84203297 1 1 149932828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0090;AVGPOST=0.9981;RSQ=0.9239;ERATE=0.0004;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149932847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0273;AVGPOST=0.9991;RSQ=0.9867;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149932852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7343;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149932866 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7410;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149932938 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3358;AVGPOST=0.9925;RSQ=0.9865;ERATE=0.0037;THETA=0.0020;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 149932946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7172;ERATE=0.0004;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149932963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8849;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149933009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0076;AVGPOST=0.9991;RSQ=0.9495;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149933049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.934;LDAF=0.0177;AVGPOST=0.9977;RSQ=0.9553;ERATE=0.0003;THETA=0.0069;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149933091 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9171;ERATE=0.0004;THETA=0.0061;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149933319 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2287;AVGPOST=0.9933;RSQ=0.9847;ERATE=0.0035;THETA=0.0005;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 149933324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0024;AVGPOST=0.9959;RSQ=0.4024;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149933366 . T TCC 16399 PASS INDEL;BAVGPOST=0.877;BRSQ=0.766;LDAF=0.6829;AVGPOST=0.8487;RSQ=0.7361;ERATE=0.0144;THETA=0.0003;AC=1532;AN=2184 GT:DS:GL:BD 0.70146519 1 1 149933458 rs78586742 C CCT 46125 PASS INDEL;BAVGPOST=0.973;BRSQ=0.917;LDAF=0.8534;AVGPOST=0.9816;RSQ=0.9519;ERATE=0.0005;THETA=0.0008;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 149933459 . C CTA 16757 PASS INDEL;BAVGPOST=0.878;BRSQ=0.767;LDAF=0.6679;AVGPOST=0.8515;RSQ=0.7490;ERATE=0.0178;THETA=0.0005;AC=1483;AN=2184 GT:DS:GL:BD 0.67902929 1 1 149933460 . C CTT 33303 PASS INDEL;BAVGPOST=0.919;BRSQ=0.788;LDAF=0.7697;AVGPOST=0.8809;RSQ=0.7409;ERATE=0.0185;THETA=0.0006;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 149933462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2012;AVGPOST=0.9981;RSQ=0.9947;ERATE=0.0005;THETA=0.0005;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 149933488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0283;AVGPOST=0.9981;RSQ=0.9706;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149933489 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9558;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149933578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1994;AVGPOST=0.9956;RSQ=0.9893;ERATE=0.0006;THETA=0.0014;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 149933662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8449;ERATE=0.0005;THETA=0.0039;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149933675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0195;AVGPOST=0.9992;RSQ=0.9813;ERATE=0.0004;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149933747 . GACAA G 247 PASS INDEL;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6312;ERATE=0.0013;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149933894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149933913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8718;AVGPOST=0.9982;RSQ=0.9937;ERATE=0.0004;THETA=0.0004;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 149933929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9699;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149933959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8332;AVGPOST=0.9981;RSQ=0.9946;ERATE=0.0003;THETA=0.0013;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 149934050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6429;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149934074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149934081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8707;AVGPOST=0.9964;RSQ=0.9879;ERATE=0.0006;THETA=0.0026;AC=1902;AN=2184 GT:DS:GL:BD 0.87087911 1 1 149934123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0298;AVGPOST=0.9947;RSQ=0.9316;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149934160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149934245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8015;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149934597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7260;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149934684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149934685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0321;AVGPOST=0.9986;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149934719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0069;AVGPOST=0.9979;RSQ=0.8751;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149934748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9114;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149934792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0099;AVGPOST=0.9997;RSQ=0.9853;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149934854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149935032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.713;LDAF=0.0054;AVGPOST=0.9960;RSQ=0.6725;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149935063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149935155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5654;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149935240 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9098;ERATE=0.0004;THETA=0.0054;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149935319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.426;LDAF=0.0026;AVGPOST=0.9960;RSQ=0.3999;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149935359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0283;AVGPOST=0.9992;RSQ=0.9885;ERATE=0.0003;THETA=0.0037;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149935517 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0004;THETA=0.0066;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149935628 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9989;RSQ=0.9854;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149935682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5485;AVGPOST=0.9939;RSQ=0.9905;ERATE=0.0008;THETA=0.0027;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 149935683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149935692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.790;LDAF=0.0065;AVGPOST=0.9968;RSQ=0.7851;ERATE=0.0005;THETA=0.0039;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149935929 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7063;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149935976 . A AT 1544 PASS INDEL;BAVGPOST=0.984;BRSQ=0.769;LDAF=0.0405;AVGPOST=0.9665;RSQ=0.6570;ERATE=0.0052;THETA=0.0099;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 149936045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0326;AVGPOST=0.9970;RSQ=0.9653;ERATE=0.0004;THETA=0.0031;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149936083 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0038;AVGPOST=0.9969;RSQ=0.7089;ERATE=0.0007;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149936210 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5572;AVGPOST=0.9814;RSQ=0.9712;ERATE=0.0041;THETA=0.0003;AC=1222;AN=2184 GT:DS:GL:BD 0.55952382 1 1 149936232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936292 . CT C 136 PASS INDEL;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4762;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7709;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936374 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7635;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936389 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.3575;AVGPOST=0.9945;RSQ=0.9902;ERATE=0.0008;THETA=0.0006;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 149936405 . TG T 213 PASS INDEL;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7806;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936414 . CG C 322 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8715;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0341;AVGPOST=0.9946;RSQ=0.9388;ERATE=0.0019;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149936487 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9994;RSQ=0.9788;ERATE=0.0003;THETA=0.0021;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149936489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4744;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936505 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0282;AVGPOST=0.9993;RSQ=0.9903;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149936523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0082;AVGPOST=0.9986;RSQ=0.9399;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149936525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0307;AVGPOST=0.9971;RSQ=0.9659;ERATE=0.0011;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 149936526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4880;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936528 . CTGA C 235 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936528 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0139;AVGPOST=0.9991;RSQ=0.9695;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149936531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0283;AVGPOST=0.9989;RSQ=0.9868;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149936532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8761;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149936533 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9250;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149936536 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9527;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149936538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0086;AVGPOST=0.9980;RSQ=0.8989;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149936539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0724;AVGPOST=0.9978;RSQ=0.9870;ERATE=0.0003;THETA=0.0007;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 149936543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4492;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0070;AVGPOST=0.9970;RSQ=0.8303;ERATE=0.0019;THETA=0.0021;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149936548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7426;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936553 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7548;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0046;AVGPOST=0.9985;RSQ=0.8809;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149936556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.3491;AVGPOST=0.9904;RSQ=0.9838;ERATE=0.0008;THETA=0.0008;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 149936557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7358;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7695;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0684;AVGPOST=0.9983;RSQ=0.9885;ERATE=0.0003;THETA=0.0029;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 149936562 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7452;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.6907;ERATE=0.0013;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936574 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6120;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936587 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7516;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5095;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4936;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936594 . G GA 300 PASS INDEL;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0100;AVGPOST=0.9951;RSQ=0.8156;ERATE=0.0006;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149936597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936598 . G GT 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.4814;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.995;LDAF=0.5737;AVGPOST=0.9913;RSQ=0.9868;ERATE=0.0015;THETA=0.0045;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 149936600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0137;AVGPOST=0.9966;RSQ=0.9016;ERATE=0.0005;THETA=0.0019;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149936608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5634;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9908;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149936621 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149936624 . G GT 1020 PASS INDEL;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0056;AVGPOST=0.9972;RSQ=0.8109;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149936630 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0083;AVGPOST=0.9991;RSQ=0.9611;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149936632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6564;ERATE=0.0019;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0101;AVGPOST=0.9988;RSQ=0.9501;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149936640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0149;AVGPOST=0.9954;RSQ=0.8829;ERATE=0.0011;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149936644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7691;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0099;AVGPOST=0.9957;RSQ=0.8406;ERATE=0.0008;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149936650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5120;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936651 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6126;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0183;AVGPOST=0.9978;RSQ=0.9482;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149936657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.993;LDAF=0.4137;AVGPOST=0.9921;RSQ=0.9884;ERATE=0.0004;THETA=0.0006;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 149936664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6002;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0176;AVGPOST=0.9975;RSQ=0.9413;ERATE=0.0008;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149936673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0676;AVGPOST=0.9954;RSQ=0.9731;ERATE=0.0005;THETA=0.0006;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149936675 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0532;AVGPOST=0.9972;RSQ=0.9802;ERATE=0.0004;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 149936679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1632;AVGPOST=0.9920;RSQ=0.9779;ERATE=0.0004;THETA=0.0006;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 149936687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.6132;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0199;AVGPOST=0.9972;RSQ=0.9476;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149936689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.931;LDAF=0.0715;AVGPOST=0.9929;RSQ=0.9588;ERATE=0.0008;THETA=0.0006;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 149936694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.990;LDAF=0.4124;AVGPOST=0.9922;RSQ=0.9880;ERATE=0.0006;THETA=0.0004;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 149936707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0356;AVGPOST=0.9967;RSQ=0.9631;ERATE=0.0004;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 149936712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.7128;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1331;AVGPOST=0.9941;RSQ=0.9810;ERATE=0.0003;THETA=0.0014;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 149936721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8184;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5769;AVGPOST=0.9916;RSQ=0.9886;ERATE=0.0005;THETA=0.0007;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 149936733 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9998;RSQ=0.9921;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149936736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7857;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149936741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8047;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936743 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936754 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936760 . TTTG T 110 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9104;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149936765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6347;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5246;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9458;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149936776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8140;ERATE=0.0007;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149936793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9232;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149936794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7745;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149936802 . TTATAA T 642 PASS INDEL;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0071;AVGPOST=0.9978;RSQ=0.8745;ERATE=0.0004;THETA=0.0021;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149936805 . ATAT A 394 PASS INDEL;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0090;AVGPOST=0.9979;RSQ=0.9150;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149936810 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0050;AVGPOST=0.9978;RSQ=0.8168;ERATE=0.0006;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149936814 . G GT 937 PASS INDEL;BAVGPOST=0.980;BRSQ=0.904;LDAF=0.1271;AVGPOST=0.9851;RSQ=0.9502;ERATE=0.0005;THETA=0.0008;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 149936820 rs34365533 T TG 13189 PASS INDEL;BAVGPOST=0.992;BRSQ=0.965;LDAF=0.1332;AVGPOST=0.9938;RSQ=0.9782;ERATE=0.0004;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 149936822 . G GT 1112 PASS INDEL;BAVGPOST=0.980;BRSQ=0.904;LDAF=0.1257;AVGPOST=0.9858;RSQ=0.9513;ERATE=0.0004;THETA=0.0007;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 149936825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0281;AVGPOST=0.9991;RSQ=0.9888;ERATE=0.0003;THETA=0.0010;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149936828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0324;AVGPOST=0.9956;RSQ=0.9531;ERATE=0.0004;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149936830 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936843 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936846 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4991;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0055;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1346;AVGPOST=0.9979;RSQ=0.9926;ERATE=0.0004;THETA=0.0017;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 149936897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8203;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936911 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149936916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9801;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149936937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6345;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149936975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0681;AVGPOST=0.9981;RSQ=0.9884;ERATE=0.0004;THETA=0.0006;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 149936982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149936986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8777;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149937041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6725;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149937061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149937119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8094;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149937245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149937286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0181;AVGPOST=0.9987;RSQ=0.9711;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149937331 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6485;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149937334 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7121;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149937433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.5732;ERATE=0.0012;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149937444 . T TA 353 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8293;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149937469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149937476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149937488 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0287;AVGPOST=0.9993;RSQ=0.9891;ERATE=0.0003;THETA=0.0018;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149937500 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149937509 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.817;LDAF=0.0660;AVGPOST=0.9898;RSQ=0.9312;ERATE=0.0007;THETA=0.0008;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 149937896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.787;BRSQ=0.628;LDAF=0.5060;AVGPOST=0.7198;RSQ=0.5357;ERATE=0.0590;THETA=0.0018;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 149937941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.878;BRSQ=0.389;LDAF=0.1564;AVGPOST=0.8420;RSQ=0.5165;ERATE=0.0114;THETA=0.0005;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 149937951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.671;LDAF=0.1163;AVGPOST=0.9017;RSQ=0.6114;ERATE=0.0099;THETA=0.0004;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 149937971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3707;AVGPOST=0.9911;RSQ=0.9859;ERATE=0.0004;THETA=0.0005;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 149938075 . A ACC 158 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4080;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149938086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149938110 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5249;AVGPOST=0.9953;RSQ=0.9933;ERATE=0.0005;THETA=0.0002;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 149938113 . AGT A 176 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6609;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149938116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.6296;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149938152 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7316;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149938166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0792;AVGPOST=0.9979;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 149938171 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0005;AVGPOST=0.9990;RSQ=0.2720;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149938172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9663;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149938225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.9067;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149938228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149938239 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5248;AVGPOST=0.9972;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 149938244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8386;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149938245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7891;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149938248 . T TA 374 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0004;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149938251 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8880;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149938254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7862;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149938256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6584;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149938257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149938261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8110;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149938262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0161;AVGPOST=0.9983;RSQ=0.9582;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149938263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8407;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149938265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0092;AVGPOST=0.9973;RSQ=0.8870;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149938267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7577;ERATE=0.0007;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149938273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8517;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149938274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.960;LDAF=0.0281;AVGPOST=0.9963;RSQ=0.9503;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149938276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6864;ERATE=0.0005;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149938291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9332;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149938292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4434;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149938306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.935;LDAF=0.1087;AVGPOST=0.9938;RSQ=0.9746;ERATE=0.0007;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 149938312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0124;AVGPOST=0.9977;RSQ=0.9250;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149938315 . C CT 5037 PASS INDEL;BAVGPOST=0.943;BRSQ=0.727;LDAF=0.1272;AVGPOST=0.9172;RSQ=0.7132;ERATE=0.0134;THETA=0.0003;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 149938315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.951;LDAF=0.4425;AVGPOST=0.9810;RSQ=0.9710;ERATE=0.0024;THETA=0.0005;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 149938318 . GA G 2243 PASS INDEL;BAVGPOST=0.953;BRSQ=0.764;LDAF=0.1060;AVGPOST=0.9414;RSQ=0.7828;ERATE=0.0055;THETA=0.0003;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 149938319 . T TGGG 27221 PASS INDEL;BAVGPOST=0.945;BRSQ=0.909;LDAF=0.4590;AVGPOST=0.9426;RSQ=0.9213;ERATE=0.0077;THETA=0.0007;AC=1021;AN=2184 GT:DS:GL:BD 0.46749085 0 1 149938321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9818;ERATE=0.0004;THETA=0.0028;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149938323 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0038;AVGPOST=0.9971;RSQ=0.7396;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149938346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0179;AVGPOST=0.9980;RSQ=0.9592;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149938359 . G GA 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7989;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149938494 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.624;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.3885;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149938497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8617;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149938621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149938651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.568;LDAF=0.0155;AVGPOST=0.9830;RSQ=0.5784;ERATE=0.0055;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149938717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0300;AVGPOST=0.9992;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 149938843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0130;AVGPOST=0.9972;RSQ=0.9157;ERATE=0.0006;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149938847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8302;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149938891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7185;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149938986 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149938993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149939121 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5210;AVGPOST=0.9939;RSQ=0.9908;ERATE=0.0005;THETA=0.0005;AC=1141;AN=2184 GT:DS:GL:BD 0.52243590 1 1 149939330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149939338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8560;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149939583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.774;LDAF=0.0128;AVGPOST=0.9932;RSQ=0.7863;ERATE=0.0006;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149939593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.873;BRSQ=0.197;LDAF=0.0702;AVGPOST=0.9152;RSQ=0.5146;ERATE=0.0043;THETA=0.0079;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 149939640 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.893;BRSQ=0.359;LDAF=0.0382;AVGPOST=0.9676;RSQ=0.7244;ERATE=0.0015;THETA=0.0057;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 149939666 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.247;LDAF=0.0493;AVGPOST=0.9419;RSQ=0.5791;ERATE=0.0017;THETA=0.0079;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 149939719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.401;LDAF=0.1100;AVGPOST=0.8919;RSQ=0.6464;ERATE=0.0008;THETA=0.0131;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 149939835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.809;BRSQ=0.401;LDAF=0.1373;AVGPOST=0.8634;RSQ=0.6225;ERATE=0.0019;THETA=0.0089;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 149939843 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.705;BRSQ=0.610;LDAF=0.1691;AVGPOST=0.8656;RSQ=0.7037;ERATE=0.0011;THETA=0.0046;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 149939886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.328;LDAF=0.0814;AVGPOST=0.9202;RSQ=0.6558;ERATE=0.0017;THETA=0.0033;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 149939948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.800;BRSQ=0.312;LDAF=0.1287;AVGPOST=0.8676;RSQ=0.6020;ERATE=0.0055;THETA=0.0082;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 149940821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.158;LDAF=0.0177;AVGPOST=0.9690;RSQ=0.2584;ERATE=0.0015;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149940849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.272;LDAF=0.1004;AVGPOST=0.8893;RSQ=0.5777;ERATE=0.0030;THETA=0.0043;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 149940864 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.184;LDAF=0.0675;AVGPOST=0.9085;RSQ=0.4367;ERATE=0.0043;THETA=0.0028;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 149941106 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.407;LDAF=0.0179;AVGPOST=0.9711;RSQ=0.3103;ERATE=0.0024;THETA=0.0023;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149941127 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.095;LDAF=0.0679;AVGPOST=0.9083;RSQ=0.4425;ERATE=0.0042;THETA=0.0027;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149941312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.063;LDAF=0.0637;AVGPOST=0.8953;RSQ=0.2975;ERATE=0.0051;THETA=0.0031;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149941370 . C CA 109 PASS INDEL;BAVGPOST=0.741;BRSQ=0.057;LDAF=0.1444;AVGPOST=0.7576;RSQ=0.1667;ERATE=0.0165;THETA=0.0017;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149941372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.797;BRSQ=0.096;LDAF=0.1016;AVGPOST=0.8620;RSQ=0.4378;ERATE=0.0030;THETA=0.0052;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 149941488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.078;LDAF=0.0438;AVGPOST=0.9284;RSQ=0.2977;ERATE=0.0024;THETA=0.0019;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149941534 . AAGT A 1024 PASS INDEL;BAVGPOST=0.826;BRSQ=0.138;LDAF=0.1579;AVGPOST=0.7595;RSQ=0.2471;ERATE=0.0165;THETA=0.0021;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 149941692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.731;BRSQ=0.151;LDAF=0.1924;AVGPOST=0.7454;RSQ=0.3201;ERATE=0.0178;THETA=0.0017;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149941694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.145;LDAF=0.0663;AVGPOST=0.8980;RSQ=0.3664;ERATE=0.0051;THETA=0.0064;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 149941697 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.607;BRSQ=0.432;LDAF=0.3807;AVGPOST=0.7113;RSQ=0.4955;ERATE=0.0243;THETA=0.0081;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 149942131 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.809;BRSQ=0.158;LDAF=0.1002;AVGPOST=0.8676;RSQ=0.4495;ERATE=0.0056;THETA=0.0089;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149942176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.829;BRSQ=0.339;LDAF=0.0994;AVGPOST=0.8987;RSQ=0.6238;ERATE=0.0017;THETA=0.0022;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 149942317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.312;LDAF=0.0360;AVGPOST=0.9567;RSQ=0.6019;ERATE=0.0008;THETA=0.0067;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149942336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.329;LDAF=0.0876;AVGPOST=0.9083;RSQ=0.6187;ERATE=0.0011;THETA=0.0045;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 149942339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.782;BRSQ=0.340;LDAF=0.1551;AVGPOST=0.8263;RSQ=0.5189;ERATE=0.0034;THETA=0.0019;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 149942348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.329;LDAF=0.0928;AVGPOST=0.9051;RSQ=0.6319;ERATE=0.0007;THETA=0.0016;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 149942365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.331;LDAF=0.0308;AVGPOST=0.9636;RSQ=0.6091;ERATE=0.0007;THETA=0.0028;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149942375 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.744;BRSQ=0.400;LDAF=0.2079;AVGPOST=0.7925;RSQ=0.5442;ERATE=0.0084;THETA=0.0037;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 149942383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.326;LDAF=0.0325;AVGPOST=0.9660;RSQ=0.6769;ERATE=0.0006;THETA=0.0080;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149942385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.572;LDAF=0.0233;AVGPOST=0.9845;RSQ=0.7844;ERATE=0.0008;THETA=0.0016;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149942399 . C CT 1283 PASS INDEL;BAVGPOST=0.879;BRSQ=0.417;LDAF=0.1174;AVGPOST=0.8495;RSQ=0.4331;ERATE=0.0176;THETA=0.0025;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 149942404 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.313;LDAF=0.0236;AVGPOST=0.9636;RSQ=0.3395;ERATE=0.0023;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149942417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.317;LDAF=0.0071;AVGPOST=0.9872;RSQ=0.1966;ERATE=0.0015;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149942454 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.543;LDAF=0.0510;AVGPOST=0.9681;RSQ=0.8067;ERATE=0.0010;THETA=0.0066;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 149942461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.563;LDAF=0.0287;AVGPOST=0.9711;RSQ=0.6523;ERATE=0.0010;THETA=0.0053;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149942480 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.714;BRSQ=0.380;LDAF=0.2458;AVGPOST=0.7544;RSQ=0.5062;ERATE=0.0200;THETA=0.0061;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 149942482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.318;LDAF=0.0080;AVGPOST=0.9895;RSQ=0.4036;ERATE=0.0011;THETA=0.0081;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149942489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.353;LDAF=0.0234;AVGPOST=0.9602;RSQ=0.2584;ERATE=0.0026;THETA=0.0038;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149942490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.259;LDAF=0.0986;AVGPOST=0.8959;RSQ=0.6373;ERATE=0.0016;THETA=0.0054;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 149942716 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.806;BRSQ=0.254;LDAF=0.0872;AVGPOST=0.9067;RSQ=0.6381;ERATE=0.0011;THETA=0.0029;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 149942763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.141;LDAF=0.0330;AVGPOST=0.9489;RSQ=0.3420;ERATE=0.0017;THETA=0.0051;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149943349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.121;LDAF=0.0203;AVGPOST=0.9631;RSQ=0.2035;ERATE=0.0019;THETA=0.0046;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149943373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.758;BRSQ=0.194;LDAF=0.1594;AVGPOST=0.7845;RSQ=0.3895;ERATE=0.0087;THETA=0.0025;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 149943434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.174;LDAF=0.0318;AVGPOST=0.9505;RSQ=0.3758;ERATE=0.0034;THETA=0.0054;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149943435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.211;LDAF=0.0990;AVGPOST=0.8564;RSQ=0.3799;ERATE=0.0094;THETA=0.0043;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149943487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.442;LDAF=0.0293;AVGPOST=0.9702;RSQ=0.6482;ERATE=0.0011;THETA=0.0044;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149943523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.864;BRSQ=0.143;LDAF=0.0739;AVGPOST=0.8856;RSQ=0.3131;ERATE=0.0084;THETA=0.0026;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149943565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.807;BRSQ=0.312;LDAF=0.1157;AVGPOST=0.8624;RSQ=0.5211;ERATE=0.0055;THETA=0.0093;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 149943609 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.312;LDAF=0.0246;AVGPOST=0.9601;RSQ=0.2839;ERATE=0.0031;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149943801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.095;LDAF=0.0302;AVGPOST=0.9511;RSQ=0.3007;ERATE=0.0022;THETA=0.0022;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149943803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.876;BRSQ=0.457;LDAF=0.0605;AVGPOST=0.9491;RSQ=0.7255;ERATE=0.0011;THETA=0.0046;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 149943824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.487;LDAF=0.0617;AVGPOST=0.9413;RSQ=0.6740;ERATE=0.0010;THETA=0.0081;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 149943861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.897;BRSQ=0.516;LDAF=0.0621;AVGPOST=0.9479;RSQ=0.7276;ERATE=0.0008;THETA=0.0041;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 149944005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.783;BRSQ=0.340;LDAF=0.1247;AVGPOST=0.8850;RSQ=0.6704;ERATE=0.0025;THETA=0.0050;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 149944007 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.152;LDAF=0.0128;AVGPOST=0.9773;RSQ=0.2551;ERATE=0.0013;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149944036 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.862;BRSQ=0.196;LDAF=0.0572;AVGPOST=0.9403;RSQ=0.6490;ERATE=0.0010;THETA=0.0025;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 149944046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.195;LDAF=0.0581;AVGPOST=0.9303;RSQ=0.5768;ERATE=0.0012;THETA=0.0057;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149944047 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.450;LDAF=0.0443;AVGPOST=0.9463;RSQ=0.5596;ERATE=0.0012;THETA=0.0044;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 149944098 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.100;LDAF=0.0042;AVGPOST=0.9923;RSQ=0.2005;ERATE=0.0008;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.904;BRSQ=0.338;LDAF=0.0660;AVGPOST=0.9255;RSQ=0.5639;ERATE=0.0043;THETA=0.0036;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 149944125 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.178;LDAF=0.0180;AVGPOST=0.9686;RSQ=0.2435;ERATE=0.0012;THETA=0.0038;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149944161 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.060;LDAF=0.0387;AVGPOST=0.9326;RSQ=0.2554;ERATE=0.0020;THETA=0.0021;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149944174 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149944348 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944406 . G GC 5 PASS INDEL;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5319;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149944406 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944499 . A ACC 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149944503 . C CCA 206 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149944504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8450;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149944539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9410;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149944544 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0479;AVGPOST=0.9972;RSQ=0.9789;ERATE=0.0004;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 149944547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9388;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149944636 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7769;ERATE=0.0003;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149944749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9226;ERATE=0.0004;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149944867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149944902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149944991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0237;AVGPOST=0.9991;RSQ=0.9845;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149945003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0231;AVGPOST=0.9988;RSQ=0.9834;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149945004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0242;AVGPOST=0.9993;RSQ=0.9907;ERATE=0.0003;THETA=0.0053;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149945026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8801;ERATE=0.0008;THETA=0.0055;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149945074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0254;AVGPOST=0.9995;RSQ=0.9917;ERATE=0.0004;THETA=0.0012;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149945178 rs35547394 TA T 9217 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0683;AVGPOST=0.9967;RSQ=0.9807;ERATE=0.0006;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 149945305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0676;AVGPOST=0.9980;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 149945385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0914;AVGPOST=0.9953;RSQ=0.9782;ERATE=0.0004;THETA=0.0197;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 149945386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6965;ERATE=0.0004;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149945404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149945421 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0239;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0004;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149945475 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5623;ERATE=0.0003;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0059;AVGPOST=0.9973;RSQ=0.8269;ERATE=0.0003;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149945578 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945584 . GC G 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4815;ERATE=0.0004;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149945619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0577;AVGPOST=0.9986;RSQ=0.9903;ERATE=0.0003;THETA=0.0014;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 149945735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5623;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149945858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.6030;ERATE=0.0003;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149945871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7731;ERATE=0.0003;THETA=0.0074;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149945902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9182;ERATE=0.0003;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149945933 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0175;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 149946074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8399;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149946076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0440;AVGPOST=0.9994;RSQ=0.9942;ERATE=0.0003;THETA=0.0034;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149946148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0697;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0012;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 149946153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7590;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5556;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0442;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0003;THETA=0.0018;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149946233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5528;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149946275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9723;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149946317 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149946337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.5302;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149946475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0179;AVGPOST=0.9983;RSQ=0.9658;ERATE=0.0004;THETA=0.0020;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149946517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0442;AVGPOST=0.9989;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149946534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8797;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149946576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0697;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 149946585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5642;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149946629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.4412;AVGPOST=0.9869;RSQ=0.9803;ERATE=0.0007;THETA=0.0009;AC=964;AN=2184 GT:DS:GL:BD 0.44139194 0 1 149946650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149946682 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0678;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0006;THETA=0.0006;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 149946735 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0057;AVGPOST=0.9990;RSQ=0.9205;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149946823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8888;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149946824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8708;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149946969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0439;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0005;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149947061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0439;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0011;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149947128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0429;AVGPOST=0.9992;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 149947158 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0173;AVGPOST=0.9987;RSQ=0.9690;ERATE=0.0003;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149947159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149947203 . A AT 925 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0438;AVGPOST=0.9982;RSQ=0.9816;ERATE=0.0004;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149947226 . T TA 6294 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0447;AVGPOST=0.9980;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149947227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149947270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 149947273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149947298 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0239;AVGPOST=0.9987;RSQ=0.9786;ERATE=0.0004;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 149947396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149947397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149947412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149947432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149947471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0003;THETA=0.0023;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149947472 . GTC G 1311 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0103;AVGPOST=0.9972;RSQ=0.8908;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149947833 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0144;AVGPOST=0.9996;RSQ=0.9876;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149947995 . ACT A 5296 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0274;AVGPOST=0.9991;RSQ=0.9901;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149948045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0271;AVGPOST=0.9993;RSQ=0.9885;ERATE=0.0003;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149948091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149948209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149948250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149948276 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9737;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149948443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149948450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0947;AVGPOST=0.9979;RSQ=0.9903;ERATE=0.0003;THETA=0.0011;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 149948455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5489;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149948493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149948505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8826;AVGPOST=0.9955;RSQ=0.9847;ERATE=0.0003;THETA=0.0002;AC=1929;AN=2184 GT:DS:GL:BD 0.88324177 1 1 149948528 . G GC 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5868;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149948645 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0086;AVGPOST=0.9986;RSQ=0.9521;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149948708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0165;AVGPOST=0.9988;RSQ=0.9715;ERATE=0.0005;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149948744 . T TCTTGA 9589 PASS INDEL;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0330;AVGPOST=0.9993;RSQ=0.9909;ERATE=0.0004;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149948767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6820;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149948833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4561;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149948843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.539;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7323;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149948995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.5254;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149949015 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.941;LDAF=0.0261;AVGPOST=0.9994;RSQ=0.9897;ERATE=0.0004;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149949024 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.940;LDAF=0.0350;AVGPOST=0.9941;RSQ=0.9396;ERATE=0.0008;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149949030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0087;AVGPOST=0.9980;RSQ=0.9119;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149949051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7385;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149949094 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0272;AVGPOST=0.9992;RSQ=0.9874;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149949101 . TC T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5313;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149949102 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8399;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149949225 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149949228 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6534;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149949247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0327;AVGPOST=0.9978;RSQ=0.9777;ERATE=0.0005;THETA=0.0056;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149949292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149949304 . CAT C 22314 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1060;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149949406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.698;LDAF=0.0432;AVGPOST=0.9692;RSQ=0.7362;ERATE=0.0066;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 149949408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9126;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149949619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1056;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149949622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8714;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149949707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7547;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149949734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0092;AVGPOST=0.9959;RSQ=0.8396;ERATE=0.0015;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149949806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9974;RSQ=0.7597;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149949835 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0308;AVGPOST=0.9995;RSQ=0.9936;ERATE=0.0003;THETA=0.0009;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 149949946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149949965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3519;AVGPOST=0.9947;RSQ=0.9913;ERATE=0.0015;THETA=0.0009;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 149950019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149950114 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149950154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0080;AVGPOST=0.9968;RSQ=0.8546;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149950210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3743;AVGPOST=0.9964;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 149950256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1061;AVGPOST=0.9988;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149950264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0179;AVGPOST=0.9955;RSQ=0.9006;ERATE=0.0004;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149950331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1058;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0005;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149950368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5107;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149950378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3803;AVGPOST=0.9966;RSQ=0.9952;ERATE=0.0007;THETA=0.0005;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 149950380 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.777;LDAF=0.0049;AVGPOST=0.9973;RSQ=0.7769;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149950399 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1057;AVGPOST=0.9991;RSQ=0.9961;ERATE=0.0005;THETA=0.0009;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149950416 . G GAA 21222 PASS INDEL;BAVGPOST=0.984;BRSQ=0.969;LDAF=0.3459;AVGPOST=0.9845;RSQ=0.9748;ERATE=0.0038;THETA=0.0004;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 149950502 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.973;LDAF=0.1029;AVGPOST=0.9961;RSQ=0.9850;ERATE=0.0007;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 149950545 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6472;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149950810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1057;AVGPOST=0.9963;RSQ=0.9860;ERATE=0.0012;THETA=0.0008;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149950918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1057;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149951072 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 149951119 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1231;AVGPOST=0.9988;RSQ=0.9951;ERATE=0.0003;THETA=0.0005;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 149951122 rs112417113 CT C 1397 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0085;AVGPOST=0.9992;RSQ=0.9607;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149951130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149951554 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149951564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7406;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149951613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9991;RSQ=0.9470;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149951668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8635;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149951682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3848;AVGPOST=0.9971;RSQ=0.9957;ERATE=0.0006;THETA=0.0004;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 149951778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.451;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.3489;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149951993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149952161 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0707;AVGPOST=0.9992;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 149952200 . C CT 114 PASS INDEL;BAVGPOST=0.988;BRSQ=0.425;LDAF=0.0229;AVGPOST=0.9681;RSQ=0.4379;ERATE=0.0087;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149952219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5549;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149952372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0072;AVGPOST=0.9980;RSQ=0.9037;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149952409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0039;AVGPOST=0.9969;RSQ=0.6903;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149952489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9709;ERATE=0.0003;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 149952569 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3834;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0005;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 149952633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0004;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 149952696 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7856;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149952723 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149952728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7595;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149952794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1234;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 149952811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.851;LDAF=0.0497;AVGPOST=0.9725;RSQ=0.7837;ERATE=0.0089;THETA=0.0009;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 149952903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6937;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149952904 . C CA 96 PASS INDEL;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5550;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149952982 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149953008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1057;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149953049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5986;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149953102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149953157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5101;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149953181 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6378;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149953201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1059;AVGPOST=0.9982;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 149953223 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7494;ERATE=0.0007;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149953293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149953362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149953493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5243;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149953546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.778;LDAF=0.0082;AVGPOST=0.9958;RSQ=0.7787;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149953551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1046;AVGPOST=0.9986;RSQ=0.9932;ERATE=0.0005;THETA=0.0006;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 149953609 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.958;LDAF=0.3835;AVGPOST=0.9588;RSQ=0.9404;ERATE=0.0060;THETA=0.0009;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 149953667 . TG T 143 PASS INDEL;BAVGPOST=0.964;BRSQ=0.202;LDAF=0.0563;AVGPOST=0.9198;RSQ=0.4135;ERATE=0.0037;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 149953706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.726;BRSQ=0.494;LDAF=0.5100;AVGPOST=0.6981;RSQ=0.4748;ERATE=0.1067;THETA=0.0007;AC=1115;AN=2184 GT:DS:GL:BD 0.51053113 1 1 149953724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.868;LDAF=0.3986;AVGPOST=0.8329;RSQ=0.7417;ERATE=0.0415;THETA=0.0006;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 149953735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0258;AVGPOST=0.9851;RSQ=0.7809;ERATE=0.0010;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 149953752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0335;AVGPOST=0.9989;RSQ=0.9852;ERATE=0.0005;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 149953786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7122;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149953797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0755;AVGPOST=0.9980;RSQ=0.9882;ERATE=0.0004;THETA=0.0007;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 149954046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7929;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149954094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0041;AVGPOST=0.9993;RSQ=0.9245;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149954111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3878;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0007;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 149954160 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149954262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9224;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149954307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5564;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149954354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149954355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7604;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0923;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 149954428 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149954569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149954775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149954798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8015;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149954859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149954870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9299;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149954971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6435;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149955056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0223;AVGPOST=0.9985;RSQ=0.9756;ERATE=0.0004;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 149955126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8286;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149955187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5918;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149955238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0187;AVGPOST=0.9991;RSQ=0.9811;ERATE=0.0004;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149955263 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0360;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0003;THETA=0.0008;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 149955314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7604;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149955317 . AT A 2022 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9994;RSQ=0.9876;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149955350 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7336;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149955511 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149955582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149955601 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149955613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8268;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149955638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4232;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149955656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149955786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0050;AVGPOST=0.9955;RSQ=0.6708;ERATE=0.0007;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149955920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3651;AVGPOST=0.9946;RSQ=0.9897;ERATE=0.0005;THETA=0.0003;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 149955953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.453;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.5738;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149955978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0367;AVGPOST=0.9981;RSQ=0.9781;ERATE=0.0006;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 149956037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4138;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149956061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1495;AVGPOST=0.9965;RSQ=0.9893;ERATE=0.0007;THETA=0.0004;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 149956125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149956146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7398;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149956154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149956247 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149956276 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0049;AVGPOST=0.9981;RSQ=0.8613;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149956330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.777;LDAF=0.0040;AVGPOST=0.9973;RSQ=0.7411;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149956657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0225;AVGPOST=0.9979;RSQ=0.9609;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 149956738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0373;AVGPOST=0.9981;RSQ=0.9806;ERATE=0.0006;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 149956983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.5698;AVGPOST=0.9959;RSQ=0.9928;ERATE=0.0009;THETA=0.0004;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 149957120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0367;AVGPOST=0.9982;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 149957278 . AG A 274 PASS INDEL;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7410;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149957291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149957465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8712;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149957483 . GTTTC G 1790 PASS INDEL;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0104;AVGPOST=0.9991;RSQ=0.9679;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149957531 . TC T 908 PASS INDEL;BAVGPOST=0.997;BRSQ=0.891;LDAF=0.0179;AVGPOST=0.9899;RSQ=0.7934;ERATE=0.0015;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149957538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.910;LDAF=0.0129;AVGPOST=0.9939;RSQ=0.8298;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149957553 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9504;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149957655 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.4235;AVGPOST=0.9834;RSQ=0.9743;ERATE=0.0022;THETA=0.0004;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 149957866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.911;LDAF=0.0082;AVGPOST=0.9965;RSQ=0.8331;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149957895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7856;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149957993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0104;AVGPOST=0.9990;RSQ=0.9614;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149958130 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7452;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149958211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8616;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149958241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0358;AVGPOST=0.9988;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 149958250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6346;AVGPOST=0.9975;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=1385;AN=2184 GT:DS:GL:BD 0.63415754 1 1 149958359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9872;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 149958384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149958603 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149958656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149958759 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149958798 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149958799 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149958898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149958904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149958984 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149959023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149959040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149959065 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149959068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9822;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149959139 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9998;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149959163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149959251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149959261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 149959358 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9489;ERATE=0.0004;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149959501 . AC A 354 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8279;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149959507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0145;AVGPOST=0.9991;RSQ=0.9778;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149959523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0914;AVGPOST=0.9980;RSQ=0.9911;ERATE=0.0003;THETA=0.0011;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 149959697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7675;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149959719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6473;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149959739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149959808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0253;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0004;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149959825 . CA C 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6591;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149959915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9593;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149959928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5319;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0117;AVGPOST=0.9991;RSQ=0.9706;ERATE=0.0003;THETA=0.0084;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149960127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9854;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149960148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0125;AVGPOST=0.9965;RSQ=0.9012;ERATE=0.0006;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149960149 . TC T 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.3943;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960385 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7536;ERATE=0.0005;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149960469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0004;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.896;LDAF=0.0137;AVGPOST=0.9968;RSQ=0.9060;ERATE=0.0004;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149960572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0034;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149960786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149960857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0004;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 149960913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5305;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149961028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0086;AVGPOST=0.9994;RSQ=0.9768;ERATE=0.0003;THETA=0.0052;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 149961111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9546;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149961126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1143;AVGPOST=0.9996;RSQ=0.9981;ERATE=0.0004;THETA=0.0005;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 149961153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6629;ERATE=0.0004;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149961238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8783;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149961287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149961407 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7313;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149961556 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149961714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5435;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149962078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4149;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149962125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0213;AVGPOST=0.9973;RSQ=0.9493;ERATE=0.0005;THETA=0.0016;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149962362 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0040;AVGPOST=0.9972;RSQ=0.7055;ERATE=0.0007;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149962436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6576;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149962440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6937;ERATE=0.0004;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149962497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9534;ERATE=0.0004;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149962538 . G GA 95 PASS INDEL;BAVGPOST=0.978;BRSQ=0.494;LDAF=0.0457;AVGPOST=0.9372;RSQ=0.4291;ERATE=0.0146;THETA=0.0029;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149962552 rs79720576 G GA 89 PASS INDEL;BAVGPOST=0.979;BRSQ=0.544;LDAF=0.0383;AVGPOST=0.9505;RSQ=0.4459;ERATE=0.0130;THETA=0.0011;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 149962563 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.2414;AVGPOST=0.9925;RSQ=0.9858;ERATE=0.0019;THETA=0.0024;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 149962608 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0057;AVGPOST=0.9979;RSQ=0.8431;ERATE=0.0004;THETA=0.0032;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149962708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9359;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149962727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9079;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149962752 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0077;AVGPOST=0.9970;RSQ=0.8735;ERATE=0.0004;THETA=0.0024;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149962773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149962988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1190;AVGPOST=0.9991;RSQ=0.9962;ERATE=0.0003;THETA=0.0009;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 149963055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6771;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149963119 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149963233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9857;ERATE=0.0003;THETA=0.0027;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 149963361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9992;RSQ=0.8869;ERATE=0.0005;THETA=0.0025;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149963375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8652;ERATE=0.0005;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149963420 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0145;AVGPOST=0.9992;RSQ=0.9734;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 149963601 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0915;AVGPOST=0.9982;RSQ=0.9917;ERATE=0.0003;THETA=0.0007;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 149963645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0253;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0004;THETA=0.0008;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149963732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149963741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9138;ERATE=0.0003;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149963786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149963824 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0254;AVGPOST=0.9994;RSQ=0.9875;ERATE=0.0004;THETA=0.0032;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 149963856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0902;AVGPOST=0.9980;RSQ=0.9906;ERATE=0.0004;THETA=0.0006;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 149963900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0139;AVGPOST=0.9954;RSQ=0.8683;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149963952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0651;AVGPOST=0.9985;RSQ=0.9899;ERATE=0.0004;THETA=0.0008;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 149963988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0077;AVGPOST=0.9987;RSQ=0.9244;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149963991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149964164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149964278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149964353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7725;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149964578 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1022;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 149964692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149964720 . T TTC 1639 PASS INDEL;BAVGPOST=0.989;BRSQ=0.942;LDAF=0.0684;AVGPOST=0.9903;RSQ=0.9425;ERATE=0.0009;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 149964844 . T TC 1990 PASS INDEL;BAVGPOST=0.991;BRSQ=0.952;LDAF=0.0658;AVGPOST=0.9941;RSQ=0.9636;ERATE=0.0004;THETA=0.0007;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 149964845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1019;AVGPOST=0.9984;RSQ=0.9924;ERATE=0.0005;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 149964881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.4162;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149964927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4421;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149964934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.959;LDAF=0.1145;AVGPOST=0.9888;RSQ=0.9585;ERATE=0.0010;THETA=0.0003;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 149964967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.912;LDAF=0.0771;AVGPOST=0.9878;RSQ=0.9424;ERATE=0.0004;THETA=0.0002;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149965122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.912;LDAF=0.0768;AVGPOST=0.9886;RSQ=0.9471;ERATE=0.0003;THETA=0.0008;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 149965123 . A AG 1842 PASS INDEL;BAVGPOST=0.987;BRSQ=0.921;LDAF=0.0749;AVGPOST=0.9854;RSQ=0.9317;ERATE=0.0005;THETA=0.0021;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 149965139 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.930;LDAF=0.0659;AVGPOST=0.9890;RSQ=0.9399;ERATE=0.0003;THETA=0.0008;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149965141 rs71306221 C CATG 11801 PASS INDEL;BAVGPOST=0.989;BRSQ=0.930;LDAF=0.0655;AVGPOST=0.9899;RSQ=0.9448;ERATE=0.0003;THETA=0.0005;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 149965142 rs71306221 T TG 194 PASS INDEL;BAVGPOST=0.979;BRSQ=0.839;LDAF=0.0692;AVGPOST=0.9848;RSQ=0.9182;ERATE=0.0006;THETA=0.0005;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 149965143 rs71306221 T TG 1303 PASS INDEL;BAVGPOST=0.988;BRSQ=0.933;LDAF=0.0676;AVGPOST=0.9890;RSQ=0.9414;ERATE=0.0003;THETA=0.0003;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 149965144 rs71306221 A AG 8406 PASS INDEL;BAVGPOST=0.987;BRSQ=0.931;LDAF=0.0691;AVGPOST=0.9875;RSQ=0.9330;ERATE=0.0007;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 149965146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1021;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 149965193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6031;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149965253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0077;AVGPOST=0.9967;RSQ=0.8471;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149965263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0167;AVGPOST=0.9980;RSQ=0.9532;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149965319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1021;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 149965424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9394;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149965432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7654;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149965440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7222;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149965479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9417;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149965495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5932;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149965528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0055;AVGPOST=0.9994;RSQ=0.9507;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149965537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1017;AVGPOST=0.9992;RSQ=0.9963;ERATE=0.0004;THETA=0.0019;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 149965698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149965871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0218;AVGPOST=0.9966;RSQ=0.9380;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149965885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1006;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 149965893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7838;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149965941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.0944;AVGPOST=0.9951;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 149965984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.976;LDAF=0.0946;AVGPOST=0.9946;RSQ=0.9788;ERATE=0.0004;THETA=0.0003;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 149965985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149966030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1007;AVGPOST=0.9991;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 149966128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149966129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0079;AVGPOST=0.9968;RSQ=0.8511;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149966200 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1006;AVGPOST=0.9996;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 149966386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1006;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 149966433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7772;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149966590 . GT G 2321 PASS INDEL;BAVGPOST=0.931;BRSQ=0.841;LDAF=0.2578;AVGPOST=0.9435;RSQ=0.8896;ERATE=0.0027;THETA=0.0002;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 149966665 rs78967947 TG T 21874 PASS INDEL;BAVGPOST=0.979;BRSQ=0.968;LDAF=0.2908;AVGPOST=0.9827;RSQ=0.9666;ERATE=0.0008;THETA=0.0035;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 149966666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5658;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149966875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7222;ERATE=0.0004;THETA=0.0058;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149967221 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7607;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149967231 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8559;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149967349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7910;ERATE=0.0004;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149967411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0064;AVGPOST=0.9953;RSQ=0.7085;ERATE=0.0005;THETA=0.0080;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149967418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.903;LDAF=0.0092;AVGPOST=0.9956;RSQ=0.8228;ERATE=0.0004;THETA=0.0023;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149967526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4867;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149967537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6328;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149967552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.828;LDAF=0.0126;AVGPOST=0.9951;RSQ=0.8467;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149967653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0298;AVGPOST=0.9973;RSQ=0.9625;ERATE=0.0005;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 149967760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9508;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149967881 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9535;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149967891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9416;ERATE=0.0003;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149967903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9589;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 149967970 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1817;AVGPOST=0.9965;RSQ=0.9914;ERATE=0.0006;THETA=0.0002;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 149968104 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3604;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149968112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0170;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 149968116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9675;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149968212 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0070;AVGPOST=0.9982;RSQ=0.9028;ERATE=0.0006;THETA=0.0027;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149968226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9635;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149968263 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149968300 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0099;AVGPOST=0.9942;RSQ=0.7776;ERATE=0.0009;THETA=0.0025;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149968339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6718;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149968497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7323;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149968498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8197;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149968572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.966;LDAF=0.1864;AVGPOST=0.9887;RSQ=0.9721;ERATE=0.0013;THETA=0.0004;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 149968580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9987;RSQ=0.2386;ERATE=0.0004;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149968632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0638;AVGPOST=0.9991;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 149968770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0145;AVGPOST=0.9981;RSQ=0.9411;ERATE=0.0007;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 149968923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.877;LDAF=0.0303;AVGPOST=0.9912;RSQ=0.8899;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 149969033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149969063 rs57944903 TG T 795 PASS INDEL;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9209;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149969105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149969244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9668;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149969260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6360;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149969274 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6828;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6474;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149969403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969474 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2147;AVGPOST=0.9973;RSQ=0.9941;ERATE=0.0004;THETA=0.0006;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 149969520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.523;LDAF=0.0028;AVGPOST=0.9957;RSQ=0.4295;ERATE=0.0016;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969524 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0270;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 149969716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149969725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149969845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9670;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149969954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8401;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149969991 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149969992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149970027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149970028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149970096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149970104 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149970121 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149970139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149970213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2167;AVGPOST=0.9929;RSQ=0.9843;ERATE=0.0005;THETA=0.0069;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 149970265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0260;AVGPOST=0.9990;RSQ=0.9836;ERATE=0.0003;THETA=0.0065;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 149970433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2206;AVGPOST=0.9931;RSQ=0.9844;ERATE=0.0007;THETA=0.0003;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 149970594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7032;ERATE=0.0009;THETA=0.0085;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149970595 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5462;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149970623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149970637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7066;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149970651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0094;AVGPOST=0.9954;RSQ=0.7999;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149970789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2837;AVGPOST=0.9956;RSQ=0.9919;ERATE=0.0005;THETA=0.0004;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 149970875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5623;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149970897 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149970919 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2910;AVGPOST=0.9940;RSQ=0.9890;ERATE=0.0012;THETA=0.0003;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 149970942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149970964 . T TG 199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7739;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149970998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149970999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149971061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149971069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 149971092 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8627;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149971094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7775;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149971192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8685;ERATE=0.0006;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149971193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6412;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149971258 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5443;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149971312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8707;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149971326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0440;AVGPOST=0.9920;RSQ=0.9257;ERATE=0.0005;THETA=0.0030;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 149971327 . T TG 552 PASS INDEL;BAVGPOST=0.932;BRSQ=0.445;LDAF=0.0759;AVGPOST=0.9140;RSQ=0.5322;ERATE=0.0090;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 149971394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9876;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149971527 . AG A 2218 PASS INDEL;BAVGPOST=0.990;BRSQ=0.971;LDAF=0.1973;AVGPOST=0.9875;RSQ=0.9697;ERATE=0.0004;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 149971679 rs35080007 GC G 18250 PASS INDEL;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.1993;AVGPOST=0.9918;RSQ=0.9798;ERATE=0.0006;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 149971681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8206;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149971708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149971957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149971959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149971967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0160;AVGPOST=0.9989;RSQ=0.9734;ERATE=0.0004;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149972055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0119;AVGPOST=0.9991;RSQ=0.9687;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149972265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149972289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9995;RSQ=0.1096;ERATE=0.0004;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 149972327 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149972348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149972356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149972418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149972444 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9056;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149972577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9594;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149972578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9638;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149972619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3399;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0005;THETA=0.0002;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 149972735 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149972797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9731;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149972916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.770;LDAF=0.0053;AVGPOST=0.9962;RSQ=0.7106;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149973212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3394;AVGPOST=0.9958;RSQ=0.9920;ERATE=0.0007;THETA=0.0004;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 149973326 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149973418 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6772;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149973454 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149973529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9282;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149973568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0051;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149973651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149973985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9293;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149974013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149974110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149974116 . T TG 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.4706;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149974175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0075;AVGPOST=0.9940;RSQ=0.6801;ERATE=0.0010;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149974208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5699;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149974327 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5980;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149974368 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5055;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149974426 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149974579 . CAATA C 107 PASS INDEL;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0054;AVGPOST=0.9965;RSQ=0.7623;ERATE=0.0005;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149974700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0234;AVGPOST=0.9985;RSQ=0.9735;ERATE=0.0006;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 149974739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6397;AVGPOST=0.9946;RSQ=0.9908;ERATE=0.0009;THETA=0.0035;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 149974747 . TCC T 911 PASS INDEL;BAVGPOST=0.795;BRSQ=0.294;LDAF=0.2257;AVGPOST=0.7388;RSQ=0.3858;ERATE=0.0235;THETA=0.0018;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 149974968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.803;BRSQ=0.650;LDAF=0.4966;AVGPOST=0.6883;RSQ=0.4804;ERATE=0.0628;THETA=0.0004;AC=1106;AN=2184 GT:DS:GL:BD 0.50641024 1 1 149974972 . C CT 60 PASS INDEL;BAVGPOST=0.950;BRSQ=0.032;LDAF=0.0978;AVGPOST=0.8746;RSQ=0.4620;ERATE=0.0060;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 149974984 . C CT 34 PASS INDEL;BAVGPOST=0.906;BRSQ=0.008;LDAF=0.1268;AVGPOST=0.8098;RSQ=0.3065;ERATE=0.0094;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 149974990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.798;BRSQ=0.116;LDAF=0.1995;AVGPOST=0.7532;RSQ=0.3802;ERATE=0.0131;THETA=0.0010;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 149974994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.818;BRSQ=0.237;LDAF=0.1879;AVGPOST=0.8610;RSQ=0.6589;ERATE=0.0067;THETA=0.0007;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 149975000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.780;BRSQ=0.145;LDAF=0.2524;AVGPOST=0.7240;RSQ=0.4173;ERATE=0.0183;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 149975553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.708;BRSQ=0.272;LDAF=0.7315;AVGPOST=0.6817;RSQ=0.3276;ERATE=0.0367;THETA=0.0004;AC=1825;AN=2184 GT:DS:GL:BD 0.83562273 1 1 149975573 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.822;BRSQ=0.576;LDAF=0.3428;AVGPOST=0.7526;RSQ=0.5788;ERATE=0.0201;THETA=0.0011;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 149975580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.538;LDAF=0.2324;AVGPOST=0.8930;RSQ=0.7859;ERATE=0.0045;THETA=0.0004;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 149976617 . AT A 2977 PASS INDEL;BAVGPOST=0.694;BRSQ=0.289;LDAF=0.6941;AVGPOST=0.6792;RSQ=0.4055;ERATE=0.0316;THETA=0.0004;AC=1694;AN=2184 GT:DS:GL:BD 0.77564102 1 1 149977456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.774;LDAF=0.0605;AVGPOST=0.9738;RSQ=0.8214;ERATE=0.0066;THETA=0.0013;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 149977483 . A AT 1017 PASS INDEL;BAVGPOST=0.926;BRSQ=0.454;LDAF=0.0957;AVGPOST=0.8997;RSQ=0.5588;ERATE=0.0097;THETA=0.0006;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 149977498 . AT A 8644 PASS INDEL;BAVGPOST=0.764;BRSQ=0.570;LDAF=0.5866;AVGPOST=0.7275;RSQ=0.5902;ERATE=0.0561;THETA=0.0004;AC=1384;AN=2184 GT:DS:GL:BD 0.63369966 1 1 149977504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149977595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149977667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149977688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149977770 . GC G 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5628;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149978137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7692;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149978181 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9335;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149978362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149978381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149978456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9159;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149978528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8449;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149978558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0314;AVGPOST=0.9991;RSQ=0.9867;ERATE=0.0004;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 149978686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5687;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149978732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6587;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149978753 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0050;AVGPOST=0.9987;RSQ=0.8806;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149978900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8532;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149979015 . CCA C 250 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149979057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8822;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149979104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149979261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149979378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9914;ERATE=0.0002;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149979484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149979560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9943;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149979622 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149979669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149979698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149979758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9811;AVGPOST=0.9996;RSQ=0.9927;ERATE=0.0002;THETA=0.0004;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 149979839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9670;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0002;THETA=0.0004;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 149979897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0013;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149979927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149979954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149980025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149980032 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0002;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149980118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0587;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0002;THETA=0.0006;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 149980186 . GCCTGTC G 627 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8452;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149980226 . GTC G 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0024;AVGPOST=0.9961;RSQ=0.3612;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149980323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.8275;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149980340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5778;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149980397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9242;ERATE=0.0002;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149980507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9459;AVGPOST=0.9988;RSQ=0.9935;ERATE=0.0004;THETA=0.0002;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 149980569 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0130;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149980641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.9436;AVGPOST=0.9956;RSQ=0.9712;ERATE=0.0007;THETA=0.0002;AC=2065;AN=2184 GT:DS:GL:BD 0.94551283 1 1 149980680 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.7237;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149980694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0046;AVGPOST=0.9967;RSQ=0.7371;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149980733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8300;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149980852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149980970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149981010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149981039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9805;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149981048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9466;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0002;THETA=0.0006;AC=2067;AN=2184 GT:DS:GL:BD 0.94642860 1 1 149981080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149981123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9465;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=2067;AN=2184 GT:DS:GL:BD 0.94642860 1 1 149981373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149981408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149981458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9117;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149981474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9806;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149981496 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8891;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149981619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9051;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149981650 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9811;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=2143;AN=2184 GT:DS:GL:BD 0.98122710 1 1 149981666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6956;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149981734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149981812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0031;AVGPOST=0.9997;RSQ=0.9585;ERATE=0.0002;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149982004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0248;AVGPOST=0.9986;RSQ=0.9805;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149982049 rs66803368 ACCCAGGGTGGCAG A 108545 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.9634;AVGPOST=0.9943;RSQ=0.9470;ERATE=0.0006;THETA=0.0003;AC=2109;AN=2184 GT:DS:GL:BD 0.96565932 1 1 149982235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0155;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149982305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9448;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0002;THETA=0.0003;AC=2063;AN=2184 GT:DS:GL:BD 0.94459707 1 1 149982461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0002;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149982478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149982588 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149982589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149982604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.8305;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149982774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149982799 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3338;AVGPOST=0.9972;RSQ=0.9951;ERATE=0.0004;THETA=0.0002;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 149983120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9645;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149983207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.902;LDAF=0.0111;AVGPOST=0.9982;RSQ=0.9420;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 149983265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0680;AVGPOST=0.9997;RSQ=0.9984;ERATE=0.0002;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 149983295 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149983511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9541;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149983623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149983662 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7379;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149983769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149983797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7642;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149983889 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6813;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149983903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.1698;ERATE=0.0002;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149983930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7669;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149983982 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0116;AVGPOST=0.9991;RSQ=0.9689;ERATE=0.0002;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149984091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6042;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149984131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0045;AVGPOST=0.9996;RSQ=0.9582;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149984258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149984357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.403;LDAF=0.0038;AVGPOST=0.9941;RSQ=0.4080;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149984539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6554;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149984559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0059;AVGPOST=0.9962;RSQ=0.7431;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 149984689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.948;LDAF=0.3026;AVGPOST=0.9736;RSQ=0.9511;ERATE=0.0085;THETA=0.0005;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 149984738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0112;AVGPOST=0.9928;RSQ=0.7565;ERATE=0.0010;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 149984762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0085;AVGPOST=0.9904;RSQ=0.5643;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149984937 . TGGGTA T 391 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8680;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149986081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149986137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149986154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149986195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8283;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149986218 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2888;AVGPOST=0.9991;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 149986261 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9163;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149986311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9994;RSQ=0.9314;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149986328 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149986380 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0041;AVGPOST=0.9997;RSQ=0.9688;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149986805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149986826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4106;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 149986847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.947;LDAF=0.0599;AVGPOST=0.9926;RSQ=0.9529;ERATE=0.0008;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 149986860 . G GT 238 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149986866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 149986916 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149986937 . G GA 33 PASS INDEL;BAVGPOST=0.997;BRSQ=0.548;LDAF=0.0085;AVGPOST=0.9879;RSQ=0.4435;ERATE=0.0018;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149986989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4072;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 149987011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149987107 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149987115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5112;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149987148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3193;AVGPOST=0.9987;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 149987207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8742;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149987234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.4166;AVGPOST=0.9766;RSQ=0.9618;ERATE=0.0071;THETA=0.0004;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 149987321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0462;AVGPOST=0.9971;RSQ=0.9803;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 149987354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149987384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0184;AVGPOST=0.9986;RSQ=0.9665;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 149987397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3021;AVGPOST=0.9975;RSQ=0.9946;ERATE=0.0008;THETA=0.0004;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 149987403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.860;LDAF=0.0109;AVGPOST=0.9957;RSQ=0.8553;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149987497 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7506;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149987536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149987587 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149987645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9699;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149987693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149987757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0452;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 149987860 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149987915 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149987947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149987958 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4115;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0005;AC=899;AN=2184 GT:DS:GL:BD 0.41163003 0 1 149987985 . T TGA 39170 PASS INDEL;BAVGPOST=0.985;BRSQ=0.973;LDAF=0.7270;AVGPOST=0.9928;RSQ=0.9856;ERATE=0.0008;THETA=0.0004;AC=1594;AN=2184 GT:DS:GL:BD 0.72985345 1 1 149988048 rs68044523 G GAGC 40572 PASS INDEL;BAVGPOST=0.971;BRSQ=0.944;LDAF=0.6969;AVGPOST=0.9569;RSQ=0.9243;ERATE=0.0170;THETA=0.0005;AC=1538;AN=2184 GT:DS:GL:BD 0.70421243 1 1 149988051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.2531;AVGPOST=0.9953;RSQ=0.9900;ERATE=0.0008;THETA=0.0002;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 149988161 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8356;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149988185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8856;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149988398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149988405 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.960;LDAF=0.4086;AVGPOST=0.9902;RSQ=0.9834;ERATE=0.0013;THETA=0.0003;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 149988657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5062;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149988713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9472;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149988745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149988749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4108;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0005;THETA=0.0004;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 149988841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9209;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149989115 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149989272 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149989319 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149989347 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.980;LDAF=0.3358;AVGPOST=0.9944;RSQ=0.9908;ERATE=0.0010;THETA=0.0015;AC=733;AN=2184 GT:DS:GL:BD 0.33562270 0 1 149989533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149989583 . A AT 289 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149989590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8010;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149989690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9468;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0004;THETA=0.0007;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 149989880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7702;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149989881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2473;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 149989926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149989928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149989932 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149989957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149989974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149989982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7017;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149990093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2942;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0030;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 149990188 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990203 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0004;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149990332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6279;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990333 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149990343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.922;LDAF=0.0134;AVGPOST=0.9982;RSQ=0.9458;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 149990366 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149990379 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0091;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149990391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9853;ERATE=0.0004;THETA=0.0027;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 149990403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7599;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149990404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149990538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0150;AVGPOST=0.9988;RSQ=0.9719;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 149990540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.8346;AVGPOST=0.9981;RSQ=0.9954;ERATE=0.0004;THETA=0.0027;AC=1822;AN=2184 GT:DS:GL:BD 0.83424908 1 1 149990544 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6084;ERATE=0.0003;THETA=0.0090;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149990716 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.927;LDAF=0.7919;AVGPOST=0.9697;RSQ=0.9345;ERATE=0.0133;THETA=0.0011;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 149990722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149990866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8588;ERATE=0.0003;THETA=0.0152;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149990912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9162;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149990917 rs67701722 GAA G 56226 PASS INDEL;BAVGPOST=0.986;BRSQ=0.978;LDAF=0.6628;AVGPOST=0.9803;RSQ=0.9725;ERATE=0.0017;THETA=0.0011;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 149991018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0004;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149991035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9156;ERATE=0.0003;THETA=0.0065;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149991130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991148 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9180;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149991198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0006;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149991199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149991203 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0024;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149991246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149991619 . GA G 537 PASS INDEL;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8869;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149991719 . AG A 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4415;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149991820 . TC T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5735;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149991827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8598;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149991877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1795;AVGPOST=0.9982;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 149991886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149991936 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149992087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149992113 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149992120 . AC A 39 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.6019;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149992121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0011;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149992161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149992192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1623;AVGPOST=0.9982;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 149992226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3377;AVGPOST=0.9958;RSQ=0.9934;ERATE=0.0018;THETA=0.0002;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 149992240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149992247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149992342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9003;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149992366 . TA T 33 PASS INDEL;BAVGPOST=0.995;BRSQ=0.621;LDAF=0.0051;AVGPOST=0.9946;RSQ=0.6071;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149992401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0351;AVGPOST=0.9982;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149992402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9764;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149992480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0107;AVGPOST=0.9987;RSQ=0.9496;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 149992513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4808;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149992526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0136;AVGPOST=0.9986;RSQ=0.9638;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 149992551 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0401;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0034;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 149992690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.886;LDAF=0.0179;AVGPOST=0.9936;RSQ=0.8622;ERATE=0.0006;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 149992848 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149992859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149992880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149993029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149993038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0070;AVGPOST=0.9982;RSQ=0.8986;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149993046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6659;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149993085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3356;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=734;AN=2184 GT:DS:GL:BD 0.33608058 0 1 149993197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1758;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 149993251 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9109;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149993283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.5771;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149993382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1767;AVGPOST=0.9988;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 149993458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2158;AVGPOST=0.9958;RSQ=0.9906;ERATE=0.0007;THETA=0.0009;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 149993475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.950;LDAF=0.0573;AVGPOST=0.9912;RSQ=0.9346;ERATE=0.0012;THETA=0.0005;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 149993504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2167;AVGPOST=0.9956;RSQ=0.9903;ERATE=0.0007;THETA=0.0004;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 149993572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2155;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0007;THETA=0.0002;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 149993578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.7478;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149993592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149993797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0122;AVGPOST=0.9992;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 149993834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149993883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2153;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0007;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 149994109 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0006;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149994177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2133;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0010;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 149994180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1622;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 149994305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149994327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149994400 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149994504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8226;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149994655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8713;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149994798 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6678;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149994881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149994924 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149994973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149995111 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.841;LDAF=0.0457;AVGPOST=0.9887;RSQ=0.9039;ERATE=0.0006;THETA=0.0002;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 149995191 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9981;RSQ=0.9497;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 149995260 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.919;LDAF=0.0343;AVGPOST=0.9905;RSQ=0.8944;ERATE=0.0006;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 149995263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9707;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149995323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149995337 rs58504118 A ACT 592 PASS INDEL;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0135;AVGPOST=0.9936;RSQ=0.8321;ERATE=0.0007;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 149995415 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8156;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 149995536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4919;AVGPOST=0.9934;RSQ=0.9907;ERATE=0.0008;THETA=0.0002;AC=1080;AN=2184 GT:DS:GL:BD 0.49450549 0 1 149995564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9360;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149995580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8707;ERATE=0.0005;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149995704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0200;AVGPOST=0.9994;RSQ=0.9852;ERATE=0.0004;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149995746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8938;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 149995781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0207;AVGPOST=0.9996;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 149995846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9346;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 149995886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0244;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 149996086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9596;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149996124 rs34190001 AGT A 21021 PASS INDEL;BAVGPOST=0.986;BRSQ=0.965;LDAF=0.1950;AVGPOST=0.9942;RSQ=0.9864;ERATE=0.0008;THETA=0.0003;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 149996124 . TGC T 4390 PASS INDEL;BAVGPOST=0.974;BRSQ=0.920;LDAF=0.1849;AVGPOST=0.9868;RSQ=0.9680;ERATE=0.0005;THETA=0.0006;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 149996132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149996260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9216;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149996352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0077;AVGPOST=0.9963;RSQ=0.8129;ERATE=0.0025;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149996432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149996548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149996741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149996910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0347;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149997003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0423;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 149997046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4932;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=1079;AN=2184 GT:DS:GL:BD 0.49404761 0 1 149997073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7554;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149997180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6277;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149997214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149997276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3068;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0005;THETA=0.0009;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 149997307 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149997394 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149997561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149997566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8747;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 149997580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7445;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149997649 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149997686 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0065;AVGPOST=0.9979;RSQ=0.8817;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149997801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6329;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149997813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149997828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9851;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149997845 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0197;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149997848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149997886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.720;LDAF=0.0075;AVGPOST=0.9919;RSQ=0.5850;ERATE=0.0025;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 149997899 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149998051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1942;AVGPOST=0.9975;RSQ=0.9934;ERATE=0.0006;THETA=0.0010;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 149998089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9323;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149998115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9482;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149998139 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0340;AVGPOST=0.9984;RSQ=0.9842;ERATE=0.0003;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 149998187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0046;AVGPOST=0.9995;RSQ=0.9535;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149998239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0044;AVGPOST=0.9979;RSQ=0.8142;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 149998304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149998327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0201;AVGPOST=0.9990;RSQ=0.9779;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149998351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1939;AVGPOST=0.9981;RSQ=0.9950;ERATE=0.0005;THETA=0.0005;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 149998499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.629;LDAF=0.0875;AVGPOST=0.9173;RSQ=0.5795;ERATE=0.0189;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 149998605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.8811;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 149998614 . A AAATT 368 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0064;AVGPOST=0.9982;RSQ=0.8666;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 149998634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0198;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 149998707 . AT A 1138 PASS INDEL;BAVGPOST=0.944;BRSQ=0.844;LDAF=0.1930;AVGPOST=0.9704;RSQ=0.9301;ERATE=0.0013;THETA=0.0017;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 149998790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.991;LDAF=0.2995;AVGPOST=0.9927;RSQ=0.9872;ERATE=0.0008;THETA=0.0004;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 149998908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.560;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6270;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149998976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0033;AVGPOST=0.9972;RSQ=0.6875;ERATE=0.0004;THETA=0.0044;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149999040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0030;AVGPOST=0.9964;RSQ=0.5914;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 149999286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5330;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149999287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.799;LDAF=0.0057;AVGPOST=0.9975;RSQ=0.8161;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 149999333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5665;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149999426 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0265;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0004;THETA=0.0010;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 149999582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149999605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6811;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149999623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0115;AVGPOST=0.9990;RSQ=0.9670;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 149999635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 149999659 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149999811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 149999916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 149999936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 149999942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 149999992 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0969;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 150000032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150000041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000250 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.683;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7188;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150000441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150000449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000463 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9172;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150000531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0004;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150000564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7737;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150000582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150000635 . C CG 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4800;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2913;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150000700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8632;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150000788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000837 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150000877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5404;AVGPOST=0.9911;RSQ=0.9866;ERATE=0.0005;THETA=0.0005;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 150000921 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9757;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150000974 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150000981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150001052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150001187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150001287 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 150001343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150001356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150001422 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9822;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150001506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150001595 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0029;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150001609 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150001729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2857;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0003;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 150001743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1472;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 150001849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1372;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 150001870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150001887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1335;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150001967 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150001984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9980;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150002047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.704;LDAF=0.0068;AVGPOST=0.9943;RSQ=0.6945;ERATE=0.0016;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150002278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150002306 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150002403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6514;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150002492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150002507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150002527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1471;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 150002546 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0085;AVGPOST=0.9990;RSQ=0.9532;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150002575 . CCAGG C 5386 PASS INDEL;BAVGPOST=0.992;BRSQ=0.860;LDAF=0.0248;AVGPOST=0.9952;RSQ=0.9317;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150002586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150002614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4758;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150002768 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0098;AVGPOST=0.9966;RSQ=0.8721;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150002779 . TC T 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7044;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150002816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.690;LDAF=0.0048;AVGPOST=0.9970;RSQ=0.7785;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150002882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6227;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150002883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0096;AVGPOST=0.9957;RSQ=0.8303;ERATE=0.0007;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150002986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9979;RSQ=0.9034;ERATE=0.0006;THETA=0.0015;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150003042 . AG A 44 PASS INDEL;BAVGPOST=0.995;BRSQ=0.684;LDAF=0.0226;AVGPOST=0.9738;RSQ=0.5256;ERATE=0.0064;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150003081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.970;LDAF=0.1266;AVGPOST=0.9926;RSQ=0.9734;ERATE=0.0010;THETA=0.0006;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 150003095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.894;LDAF=0.1431;AVGPOST=0.9852;RSQ=0.9510;ERATE=0.0013;THETA=0.0004;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 150003152 . CA C 58 PASS INDEL;BAVGPOST=0.969;BRSQ=0.363;LDAF=0.0479;AVGPOST=0.9382;RSQ=0.4758;ERATE=0.0051;THETA=0.0022;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150003156 rs111451881 A AT 27156 PASS INDEL;BAVGPOST=0.980;BRSQ=0.293;LDAF=0.9826;AVGPOST=0.9773;RSQ=0.4996;ERATE=0.0011;THETA=0.0004;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 150003166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1051;AVGPOST=0.9973;RSQ=0.9891;ERATE=0.0006;THETA=0.0004;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 150003257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9353;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150003274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9826;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150003359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0182;AVGPOST=0.9985;RSQ=0.9673;ERATE=0.0003;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150003369 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9482;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150003406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9994;RSQ=0.9806;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150003426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9808;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150003537 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1246;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0004;THETA=0.0014;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 150003538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150003539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6123;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150003567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9991;RSQ=0.9798;ERATE=0.0004;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150003572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150003573 . AAAAAG A 1621 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9634;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150003637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1143;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0005;AC=250;AN=2184 GT:DS:GL:BD 0.11446887 0 1 150003690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5836;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150003746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9747;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150004039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7048;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=1538;AN=2184 GT:DS:GL:BD 0.70421243 1 1 150004040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9180;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150004127 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150004139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150004290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0343;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 150004368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150004392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150004430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150004471 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150004500 . ATG A 242 PASS INDEL;BAVGPOST=0.986;BRSQ=0.735;LDAF=0.0323;AVGPOST=0.9749;RSQ=0.6647;ERATE=0.0166;THETA=0.0023;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150004553 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5220;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150004636 . AC A 125 PASS INDEL;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7369;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150004679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5039;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150004684 . C CA 2218 PASS INDEL;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0382;AVGPOST=0.9900;RSQ=0.9002;ERATE=0.0015;THETA=0.0008;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150005032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150005180 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6560;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150005274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5549;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150005286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.646;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6888;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150005463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0063;AVGPOST=0.9975;RSQ=0.8746;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150005466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0078;AVGPOST=0.9982;RSQ=0.9062;ERATE=0.0006;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150005469 . C CA 66 PASS INDEL;BAVGPOST=0.982;BRSQ=0.488;LDAF=0.0336;AVGPOST=0.9564;RSQ=0.4816;ERATE=0.0093;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150005513 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5514;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150005555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7564;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150005566 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4767;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150005655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3689;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150005691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7532;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150005897 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0266;AVGPOST=0.9987;RSQ=0.9804;ERATE=0.0004;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 150005992 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6082;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150006014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9709;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150006149 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7827;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150006198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0143;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0003;THETA=0.0016;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150006285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7648;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150006295 . CAGTA C 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150006349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150006424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.8098;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150006487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8227;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150006496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5450;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150006526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6967;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150006688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5817;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150006768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9506;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150006810 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150006859 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9561;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150006919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150006929 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.666;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150006976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150007059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6671;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150007084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150007109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150007411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0151;AVGPOST=0.9989;RSQ=0.9722;ERATE=0.0005;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150007413 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5643;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150007501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7906;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150007545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.686;LDAF=0.0183;AVGPOST=0.9919;RSQ=0.8120;ERATE=0.0008;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150008000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5424;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150008212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150008230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0074;AVGPOST=0.9968;RSQ=0.8320;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150008328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6413;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150008367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8183;AVGPOST=0.9959;RSQ=0.9900;ERATE=0.0007;THETA=0.0007;AC=1788;AN=2184 GT:DS:GL:BD 0.81868130 1 1 150008421 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150008568 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9221;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150008734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9157;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150008796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.456;LDAF=0.0038;AVGPOST=0.9942;RSQ=0.4006;ERATE=0.0007;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150008855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0199;AVGPOST=0.9901;RSQ=0.7916;ERATE=0.0011;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150008950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7547;ERATE=0.0008;THETA=0.0028;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150008954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0030;AVGPOST=0.9980;RSQ=0.7523;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150009121 . G GAA 484 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8494;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150009506 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0497;AVGPOST=0.9992;RSQ=0.9928;ERATE=0.0004;THETA=0.0008;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 150009621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.905;LDAF=0.0309;AVGPOST=0.9930;RSQ=0.9129;ERATE=0.0004;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 150009647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6030;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150009953 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150010086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0990;AVGPOST=0.9978;RSQ=0.9898;ERATE=0.0004;THETA=0.0007;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 150010151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6344;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150010310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9496;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150010332 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150010429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4888;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150010475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0071;AVGPOST=0.9984;RSQ=0.8987;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150010671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5222;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150010714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7152;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150010917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150011142 rs10698512 G GATTA 87966 PASS INDEL;BAVGPOST=0.979;BRSQ=0.964;LDAF=0.4367;AVGPOST=0.9866;RSQ=0.9804;ERATE=0.0019;THETA=0.0003;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 150011177 . T TA 9497 PASS INDEL;BAVGPOST=0.935;BRSQ=0.867;LDAF=0.3512;AVGPOST=0.8942;RSQ=0.8270;ERATE=0.0327;THETA=0.0006;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 150011180 . A AT 51 PASS INDEL;BAVGPOST=0.996;BRSQ=0.593;LDAF=0.0066;AVGPOST=0.9916;RSQ=0.4714;ERATE=0.0037;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150011287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5953;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150011390 . G GT 253 PASS INDEL;BAVGPOST=0.981;BRSQ=0.502;LDAF=0.0332;AVGPOST=0.9570;RSQ=0.4483;ERATE=0.0076;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150011549 . ACT A 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5879;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150011572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0132;AVGPOST=0.9961;RSQ=0.8795;ERATE=0.0006;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150011575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.844;LDAF=0.0292;AVGPOST=0.9846;RSQ=0.7995;ERATE=0.0006;THETA=0.0006;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150011888 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150011956 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0500;AVGPOST=0.9991;RSQ=0.9915;ERATE=0.0006;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150011962 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0037;AVGPOST=0.9973;RSQ=0.7079;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150011984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8659;ERATE=0.0003;THETA=0.0031;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150012088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.2353;AVGPOST=0.9956;RSQ=0.9892;ERATE=0.0006;THETA=0.0005;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 150012195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150012440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150012486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150012522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150012546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150012747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0042;AVGPOST=0.9963;RSQ=0.6531;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150012755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150012845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0356;AVGPOST=0.9992;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 150012890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9212;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150013145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.468;LDAF=0.0096;AVGPOST=0.9855;RSQ=0.4019;ERATE=0.0034;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150013216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3958;ERATE=0.0007;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150013227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.2872;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150013263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0136;AVGPOST=0.9934;RSQ=0.7897;ERATE=0.0008;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150013304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0213;AVGPOST=0.9963;RSQ=0.9296;ERATE=0.0005;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150013355 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0045;AVGPOST=0.9943;RSQ=0.5205;ERATE=0.0006;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150013483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0489;AVGPOST=0.9979;RSQ=0.9822;ERATE=0.0005;THETA=0.0008;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 150013773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.506;LDAF=0.0060;AVGPOST=0.9927;RSQ=0.5091;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150013798 . C CAA 1573 PASS INDEL;BAVGPOST=0.724;BRSQ=0.365;LDAF=0.3309;AVGPOST=0.6893;RSQ=0.4026;ERATE=0.0356;THETA=0.0006;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 150013798 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.951;LDAF=0.9196;AVGPOST=0.9842;RSQ=0.9160;ERATE=0.0005;THETA=0.0003;AC=2013;AN=2184 GT:DS:GL:BD 0.92170328 1 1 150013843 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0048;AVGPOST=0.9955;RSQ=0.6321;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150013879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150013939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150014000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150014331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150014447 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0261;AVGPOST=0.9968;RSQ=0.9540;ERATE=0.0007;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 150014631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6461;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150014720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150014739 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0162;AVGPOST=0.9979;RSQ=0.9485;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150014760 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0161;AVGPOST=0.9983;RSQ=0.9583;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150014762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150014882 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8840;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150014925 . G GT 136 PASS INDEL;BAVGPOST=0.997;BRSQ=0.391;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7198;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150014965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0047;AVGPOST=0.9980;RSQ=0.8524;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150015028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150015208 rs60933193 TGA T 1976 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9985;RSQ=0.9535;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150015415 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.7044;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150015469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150015557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8187;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150015570 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.6672;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150015638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7309;ERATE=0.0017;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150015645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9988;RSQ=0.3314;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150015662 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5374;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150015690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150015854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150015902 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0725;AVGPOST=0.9990;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 150015969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150015980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7687;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150016055 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150016197 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0848;AVGPOST=0.9979;RSQ=0.9905;ERATE=0.0003;THETA=0.0009;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 150016227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7492;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150016235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3896;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0005;THETA=0.0001;AC=848;AN=2184 GT:DS:GL:BD 0.38827839 0 1 150016236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9992;RSQ=0.8859;ERATE=0.0012;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150016268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9165;ERATE=0.0014;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150016269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150016375 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4651;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150016483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.940;LDAF=0.0162;AVGPOST=0.9959;RSQ=0.9179;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150016495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.5064;AVGPOST=0.9910;RSQ=0.9855;ERATE=0.0006;THETA=0.0005;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 150016544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0114;AVGPOST=0.9992;RSQ=0.9721;ERATE=0.0004;THETA=0.0027;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150016584 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.4118;AVGPOST=0.9934;RSQ=0.9893;ERATE=0.0008;THETA=0.0003;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 150016778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7919;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150016785 . A AATCTT 198 PASS INDEL;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4436;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150016796 . C CG 88 PASS INDEL;BAVGPOST=0.999;BRSQ=0.523;LDAF=0.0038;AVGPOST=0.9950;RSQ=0.5026;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150016896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.4055;AVGPOST=0.9921;RSQ=0.9870;ERATE=0.0009;THETA=0.0005;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 150016908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7752;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150016966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1069;AVGPOST=0.9980;RSQ=0.9920;ERATE=0.0003;THETA=0.0006;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 150016973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5532;AVGPOST=0.9948;RSQ=0.9922;ERATE=0.0005;THETA=0.0069;AC=1208;AN=2184 GT:DS:GL:BD 0.55311358 1 1 150017057 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5728;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150017072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0003;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150017160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017327 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0212;AVGPOST=0.9985;RSQ=0.9749;ERATE=0.0003;THETA=0.0024;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150017375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0206;AVGPOST=0.9983;RSQ=0.9628;ERATE=0.0004;THETA=0.0059;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150017415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6640;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150017419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6415;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150017424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017434 . A AC 28 PASS INDEL;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5313;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6097;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9978;RSQ=0.4058;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6406;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0223;AVGPOST=0.9992;RSQ=0.9863;ERATE=0.0003;THETA=0.0019;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150017757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150017922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0004;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150018250 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6230;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150018291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6704;ERATE=0.0005;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150018361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150018467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150018491 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150018532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9197;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150018584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9286;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150018585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0005;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150018609 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.2418;AVGPOST=0.9845;RSQ=0.9720;ERATE=0.0008;THETA=0.0003;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 150018783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150018919 . TGCC T 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6888;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150018945 . GCT G 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5625;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150019024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6039;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019067 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019096 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0009;THETA=0.0042;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150019163 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0058;AVGPOST=0.9989;RSQ=0.9177;ERATE=0.0004;THETA=0.0048;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150019173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9721;ERATE=0.0004;THETA=0.0046;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150019317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8902;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150019379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8924;ERATE=0.0004;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150019522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0183;AVGPOST=0.9967;RSQ=0.9418;ERATE=0.0003;THETA=0.0034;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150019548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150019606 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0388;AVGPOST=0.9942;RSQ=0.9447;ERATE=0.0006;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 150021959 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.811;LDAF=0.0241;AVGPOST=0.9880;RSQ=0.8135;ERATE=0.0004;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150022005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0040;AVGPOST=0.9963;RSQ=0.6219;ERATE=0.0013;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150022006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0221;AVGPOST=0.9986;RSQ=0.9709;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150022009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.748;LDAF=0.0497;AVGPOST=0.9785;RSQ=0.8402;ERATE=0.0012;THETA=0.0021;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 150022012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0046;AVGPOST=0.9970;RSQ=0.7651;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150022641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9312;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150022659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.6857;ERATE=0.0003;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150022665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7555;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150022746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.7692;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150023799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.8789;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150023801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150023814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.548;LDAF=0.1551;AVGPOST=0.8876;RSQ=0.6937;ERATE=0.0096;THETA=0.0009;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 150023830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3784;ERATE=0.0007;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150025133 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.888;LDAF=0.0134;AVGPOST=0.9918;RSQ=0.7468;ERATE=0.0010;THETA=0.0033;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150025171 . AG A 26858 PASS INDEL;BAVGPOST=0.993;BRSQ=0.538;LDAF=0.9904;AVGPOST=0.9886;RSQ=0.5053;ERATE=0.0012;THETA=0.0027;AC=2170;AN=2184 GT:DS:GL:BD 0.99358976 1 1 150025192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6922;ERATE=0.0006;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150025216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.964;LDAF=0.2618;AVGPOST=0.9795;RSQ=0.9630;ERATE=0.0007;THETA=0.0025;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 150025332 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0905;AVGPOST=0.9970;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 150025379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.7081;ERATE=0.0003;THETA=0.0046;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150025381 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7157;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150025408 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150025460 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150025489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150025490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7972;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150025613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3891;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150025623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8734;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150025739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7948;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150025819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150025914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9453;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150025928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.8183;ERATE=0.0006;THETA=0.0063;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150025951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0179;AVGPOST=0.9987;RSQ=0.9679;ERATE=0.0004;THETA=0.0084;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150025960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150025966 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0065;AVGPOST=0.9978;RSQ=0.8805;ERATE=0.0004;THETA=0.0041;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150026085 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150026204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0279;AVGPOST=0.9989;RSQ=0.9835;ERATE=0.0003;THETA=0.0057;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150026256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8608;ERATE=0.0003;THETA=0.0043;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150026299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.970;LDAF=0.2104;AVGPOST=0.9890;RSQ=0.9773;ERATE=0.0011;THETA=0.0049;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 150026346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9508;ERATE=0.0003;THETA=0.0104;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150026364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8251;ERATE=0.0007;THETA=0.0106;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150026470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.3441;AVGPOST=0.9817;RSQ=0.9721;ERATE=0.0007;THETA=0.0096;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 150026633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0155;AVGPOST=0.9991;RSQ=0.9790;ERATE=0.0004;THETA=0.0061;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150026658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7332;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150026681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.807;LDAF=0.0063;AVGPOST=0.9968;RSQ=0.7938;ERATE=0.0007;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150026701 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0080;AVGPOST=0.9964;RSQ=0.8028;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150026707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150026717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8450;ERATE=0.0003;THETA=0.0093;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150026744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0261;AVGPOST=0.9986;RSQ=0.9801;ERATE=0.0003;THETA=0.0061;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150026747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6440;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150026748 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150026753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.7923;ERATE=0.0025;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150026854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9786;ERATE=0.0004;THETA=0.0036;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150026855 . A AT 1203 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8891;ERATE=0.0004;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150026874 . TG T 1423 PASS INDEL;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0168;AVGPOST=0.9962;RSQ=0.9124;ERATE=0.0005;THETA=0.0084;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150026875 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150026953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8524;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150027141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150027205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150027208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.887;LDAF=0.0120;AVGPOST=0.9980;RSQ=0.9346;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150027210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0059;AVGPOST=0.9979;RSQ=0.8951;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150027295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.9948;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0005;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 150027332 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150027380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150027383 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150027390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150027399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8697;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150027469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4031;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0006;THETA=0.0005;AC=879;AN=2184 GT:DS:GL:BD 0.40247253 0 1 150027665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1029;AVGPOST=0.9993;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 150027705 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4028;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0021;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 150027722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5783;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 150027773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1028;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 150027798 . T TACAGTTAC 485 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150027954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4006;AVGPOST=0.9992;RSQ=0.9987;ERATE=0.0004;THETA=0.0004;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 150027989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150028025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150028105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150028192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150028201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=0.9998;RSQ=0.9955;ERATE=0.0003;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150028202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2260;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150028203 rs112889748 GTGGAGTCTGTC G 69800 PASS INDEL;BAVGPOST=0.986;BRSQ=0.974;LDAF=0.5245;AVGPOST=0.9814;RSQ=0.9690;ERATE=0.0035;THETA=0.0004;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 150028355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5330;AVGPOST=0.9960;RSQ=0.9936;ERATE=0.0009;THETA=0.0004;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 150028448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3759;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0007;THETA=0.0004;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 150028499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7234;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150028505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5839;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150028569 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5323;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 150028581 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6715;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150028596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0109;AVGPOST=0.9987;RSQ=0.9529;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150028611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5323;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0006;THETA=0.0003;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 150028642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5329;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0005;THETA=0.0003;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 150028673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4003;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0006;THETA=0.0005;AC=874;AN=2184 GT:DS:GL:BD 0.40018314 0 1 150028714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4656;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150028783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5085;AVGPOST=0.9969;RSQ=0.9953;ERATE=0.0006;THETA=0.0006;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 150028936 . AGTC A 3995 PASS INDEL;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0225;AVGPOST=0.9995;RSQ=0.9890;ERATE=0.0003;THETA=0.0011;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150028964 . CCAGG C 4025 PASS INDEL;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0227;AVGPOST=0.9992;RSQ=0.9834;ERATE=0.0005;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150028970 . G GT 590 PASS INDEL;BAVGPOST=0.996;BRSQ=0.910;LDAF=0.0230;AVGPOST=0.9984;RSQ=0.9699;ERATE=0.0004;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150028975 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5084;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 150029079 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5092;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 150029106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5079;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0006;THETA=0.0006;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 150029177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6952;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150029199 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.929;LDAF=0.0444;AVGPOST=0.9934;RSQ=0.9462;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150029208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9642;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150029230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8019;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150029260 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150029311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150029409 . T TC 15479 PASS INDEL;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.5103;AVGPOST=0.9869;RSQ=0.9801;ERATE=0.0009;THETA=0.0005;AC=1124;AN=2184 GT:DS:GL:BD 0.51465201 1 1 150029538 rs57843607 C CA 55412 PASS INDEL;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.5093;AVGPOST=0.9856;RSQ=0.9789;ERATE=0.0031;THETA=0.0002;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 150029540 . CCTTA C 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6252;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150029715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150029721 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9620;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150029767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150029816 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.567;LDAF=0.0259;AVGPOST=0.9735;RSQ=0.5999;ERATE=0.0103;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150029838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150029884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5131;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 150029915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5626;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150029940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3170;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 150029946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.683;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150029951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2710;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150029957 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.9001;ERATE=0.0003;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150030008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150030010 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5134;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0009;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 150030079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4004;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150030123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3503;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0005;THETA=0.0002;AC=764;AN=2184 GT:DS:GL:BD 0.34981686 0 1 150030138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5134;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0006;THETA=0.0002;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 150030143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7831;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150030168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150030176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9074;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150030209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8092;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150030248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150030298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5135;AVGPOST=0.9965;RSQ=0.9950;ERATE=0.0004;THETA=0.0033;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 150030354 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1269;AVGPOST=0.9987;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 150030451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150030515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9391;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150030599 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.9105;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150030758 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150030802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1741;AVGPOST=0.9936;RSQ=0.9812;ERATE=0.0007;THETA=0.0004;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 150030842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2752;AVGPOST=0.9959;RSQ=0.9928;ERATE=0.0005;THETA=0.0002;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 150030851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3548;AVGPOST=0.9953;RSQ=0.9930;ERATE=0.0009;THETA=0.0003;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 150030874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0218;AVGPOST=0.9994;RSQ=0.9866;ERATE=0.0005;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150030914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9332;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150030917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5125;AVGPOST=0.9966;RSQ=0.9936;ERATE=0.0010;THETA=0.0004;AC=1121;AN=2184 GT:DS:GL:BD 0.51327837 1 1 150030931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.3628;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0006;THETA=0.0007;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 150031053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.3662;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0006;THETA=0.0006;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 150031065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6161;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150031081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0180;AVGPOST=0.9996;RSQ=0.9912;ERATE=0.0003;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150031130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1303;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 150031193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4923;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 150031250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0500;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150031274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4931;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 150031292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150031327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4930;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=1077;AN=2184 GT:DS:GL:BD 0.49313188 0 1 150031350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150031377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.9848;AVGPOST=0.9967;RSQ=0.9291;ERATE=0.0006;THETA=0.0007;AC=2151;AN=2184 GT:DS:GL:BD 0.98489010 1 1 150031670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4919;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 150031745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4928;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0004;THETA=0.0003;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 150031765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9333;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150031823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7970;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150031824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4928;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 150031960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8322;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150031965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150031968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150032009 . T TG 3076 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9978;RSQ=0.9519;ERATE=0.0004;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150032053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9179;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150032067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6546;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150032106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.911;LDAF=0.0352;AVGPOST=0.9965;RSQ=0.9572;ERATE=0.0004;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 150032144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150032169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7478;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150032176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150032261 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3728;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150032355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.510;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5307;ERATE=0.0006;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150032379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0036;AVGPOST=0.9942;RSQ=0.4105;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150032401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0138;AVGPOST=0.9994;RSQ=0.9777;ERATE=0.0004;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150032508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.574;LDAF=0.0070;AVGPOST=0.9958;RSQ=0.7362;ERATE=0.0006;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150032542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150032682 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9684;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150032762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150032826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9352;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150032830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0162;AVGPOST=0.9996;RSQ=0.9875;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150032868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0159;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0003;THETA=0.0031;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150032927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0674;AVGPOST=0.9966;RSQ=0.9797;ERATE=0.0004;THETA=0.0007;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 150032968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150032993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150033067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1049;AVGPOST=0.9985;RSQ=0.9940;ERATE=0.0003;THETA=0.0012;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 150033228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5980;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150033767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0587;AVGPOST=0.9954;RSQ=0.9722;ERATE=0.0005;THETA=0.0011;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 150033908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1099;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150034301 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6127;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150034399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.817;LDAF=0.0100;AVGPOST=0.9942;RSQ=0.7778;ERATE=0.0007;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150034434 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034443 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150034472 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5104;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150034793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.948;LDAF=0.1098;AVGPOST=0.9966;RSQ=0.9838;ERATE=0.0009;THETA=0.0008;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150034955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4196;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150035044 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.6501;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150035077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9628;ERATE=0.0005;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150035094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150035136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.885;LDAF=0.0127;AVGPOST=0.9979;RSQ=0.9304;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150035231 . A AT 158 PASS INDEL;BAVGPOST=0.972;BRSQ=0.467;LDAF=0.0490;AVGPOST=0.9328;RSQ=0.4180;ERATE=0.0139;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150035534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.913;LDAF=0.0162;AVGPOST=0.9991;RSQ=0.9725;ERATE=0.0005;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150035782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9996;RSQ=0.9875;ERATE=0.0003;THETA=0.0007;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150035845 . G GT 26 PASS INDEL;BAVGPOST=0.996;BRSQ=0.585;LDAF=0.0094;AVGPOST=0.9863;RSQ=0.4440;ERATE=0.0026;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150035866 . C CT 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5675;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150036020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0161;AVGPOST=0.9995;RSQ=0.9836;ERATE=0.0004;THETA=0.0013;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150036022 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.860;LDAF=0.0070;AVGPOST=0.9982;RSQ=0.8838;ERATE=0.0004;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150036040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0161;AVGPOST=0.9996;RSQ=0.9889;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150036171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150036275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0038;AVGPOST=0.9956;RSQ=0.5195;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150036368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5609;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150036389 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150036519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.936;LDAF=0.7049;AVGPOST=0.9662;RSQ=0.9412;ERATE=0.0004;THETA=0.0010;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 150036630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0015;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150036767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9788;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150036817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150036918 . C CT 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150036932 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0079;AVGPOST=0.9977;RSQ=0.8770;ERATE=0.0006;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150036936 rs58375974 TC T 519 PASS INDEL;BAVGPOST=0.993;BRSQ=0.639;LDAF=0.0157;AVGPOST=0.9963;RSQ=0.9003;ERATE=0.0006;THETA=0.0014;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150037053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1030;AVGPOST=0.9951;RSQ=0.9806;ERATE=0.0005;THETA=0.0006;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 150037380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150037515 . TAGC T 282 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8026;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150037521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.954;LDAF=0.0844;AVGPOST=0.9910;RSQ=0.9616;ERATE=0.0005;THETA=0.0007;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 150037582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4660;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150037679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8166;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150037731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0061;AVGPOST=0.9970;RSQ=0.8148;ERATE=0.0004;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150037749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0831;AVGPOST=0.9984;RSQ=0.9912;ERATE=0.0005;THETA=0.0007;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 150037851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6373;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150038298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0840;AVGPOST=0.9994;RSQ=0.9966;ERATE=0.0003;THETA=0.0013;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 150038319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1885;AVGPOST=0.9910;RSQ=0.9813;ERATE=0.0009;THETA=0.0008;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 150038345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0800;AVGPOST=0.9931;RSQ=0.9677;ERATE=0.0014;THETA=0.0018;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 150038346 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150038431 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1991;AVGPOST=0.9973;RSQ=0.9940;ERATE=0.0005;THETA=0.0010;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 150038548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150038629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150038748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0832;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150038769 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0045;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150038962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150038982 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9987;RSQ=0.9331;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150039052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150039127 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150039328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8968;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150039529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9333;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150039530 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5578;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150039754 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9689;ERATE=0.0004;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150039787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5916;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150039808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150039980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1077;AVGPOST=0.9969;RSQ=0.9879;ERATE=0.0004;THETA=0.0010;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150039983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150039999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0076;AVGPOST=0.9982;RSQ=0.9008;ERATE=0.0007;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150040025 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150040359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150040517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8970;ERATE=0.0004;THETA=0.0039;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150040685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8224;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150041150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150041236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5446;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.975;LDAF=0.1464;AVGPOST=0.9907;RSQ=0.9735;ERATE=0.0007;THETA=0.0011;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 150041316 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9259;ERATE=0.0005;THETA=0.0056;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150041363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150041494 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150041503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041516 . A AT 249 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7187;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150041530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150041563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150041643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150041682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150041709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150041756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150041856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150041871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0004;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150041923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0007;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150042017 . CCT C 505 PASS INDEL;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0071;AVGPOST=0.9924;RSQ=0.5716;ERATE=0.0017;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150042023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.0934;AVGPOST=0.9966;RSQ=0.9853;ERATE=0.0004;THETA=0.0032;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 150042061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1217;AVGPOST=0.9945;RSQ=0.9817;ERATE=0.0013;THETA=0.0060;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 150042126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9717;ERATE=0.0003;THETA=0.0066;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150042317 rs67781183 GA G 2775 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0375;AVGPOST=0.9989;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150042364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6354;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8613;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150042416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9985;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150042437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5960;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7224;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150042569 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0372;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150042575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9382;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150042736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150042760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150042801 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6548;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=1428;AN=2184 GT:DS:GL:BD 0.65384614 1 1 150042863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7858;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150042877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.0915;AVGPOST=0.9987;RSQ=0.9945;ERATE=0.0004;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 150042885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0075;AVGPOST=0.9990;RSQ=0.9483;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150042916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150042935 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150042967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9333;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150042989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0308;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150042997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0372;AVGPOST=0.9997;RSQ=0.9959;ERATE=0.0003;THETA=0.0013;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150043118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0773;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 150043197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9979;RSQ=0.9423;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150043332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7797;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150043373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150043562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150043576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150043654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6812;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150043730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0308;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150043807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150043816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9635;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150043870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0774;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0003;THETA=0.0011;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 150043928 . C CAG 14659 PASS INDEL;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.1294;AVGPOST=0.9964;RSQ=0.9878;ERATE=0.0005;THETA=0.0006;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 150043956 . G GA 1667 PASS INDEL;BAVGPOST=0.987;BRSQ=0.948;LDAF=0.1242;AVGPOST=0.9913;RSQ=0.9687;ERATE=0.0011;THETA=0.0005;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 150043960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0249;AVGPOST=0.9978;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150043998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150044142 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150044173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0051;AVGPOST=0.9976;RSQ=0.8030;ERATE=0.0007;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150044268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1173;AVGPOST=0.9975;RSQ=0.9903;ERATE=0.0006;THETA=0.0003;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 150044290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0237;AVGPOST=0.9993;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150044364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150044382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150044479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6171;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150044492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7915;AVGPOST=0.9982;RSQ=0.9952;ERATE=0.0005;THETA=0.0021;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 150044543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150044573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1162;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150044577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6936;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150044683 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6920;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150044703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1163;AVGPOST=0.9987;RSQ=0.9946;ERATE=0.0006;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150044721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1161;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150044725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1161;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150044777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150044792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5156;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150044940 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150044970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0353;AVGPOST=0.9996;RSQ=0.9944;ERATE=0.0004;THETA=0.0002;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 150044991 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8636;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150045019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045091 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1420;AVGPOST=0.9963;RSQ=0.9901;ERATE=0.0005;THETA=0.0003;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 150045205 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7921;AVGPOST=0.9970;RSQ=0.9928;ERATE=0.0003;THETA=0.0007;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 150045207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7837;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150045227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045280 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7913;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150045388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8998;ERATE=0.0014;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150045429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6975;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150045431 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9996;RSQ=0.9924;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150045476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150045558 . TCTTA T 305 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8198;ERATE=0.0006;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150045561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045610 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150045623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9409;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150045625 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8825;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150045694 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.7361;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150045725 . AGCT A 24 PASS INDEL;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8550;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150045744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150045778 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6283;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150045817 . GT G 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150046027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150046043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6321;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150046055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0013;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150046160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0124;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150046195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9167;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150046200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8039;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150046209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0231;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150046281 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0105;AVGPOST=0.9990;RSQ=0.9639;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150046313 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5363;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150046368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9207;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150046398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9438;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150046558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4225;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150046722 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150046735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0357;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150046828 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3938;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150046877 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.7594;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150046883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1174;AVGPOST=0.9929;RSQ=0.9738;ERATE=0.0008;THETA=0.0004;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150046909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.728;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7735;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150046975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1162;AVGPOST=0.9957;RSQ=0.9844;ERATE=0.0006;THETA=0.0011;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150047078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1408;AVGPOST=0.9978;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 150047086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1399;AVGPOST=0.9980;RSQ=0.9925;ERATE=0.0004;THETA=0.0002;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 150047131 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150047153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1194;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 150047187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150047291 . T TA 30 PASS INDEL;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5973;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150047405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0003;THETA=0.0024;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150047479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150047492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150047555 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150047593 . CA C 29 PASS INDEL;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0087;AVGPOST=0.9918;RSQ=0.6312;ERATE=0.0024;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150047624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150047642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150047789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150047800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150047947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150048008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150048111 . GA G 176 PASS INDEL;BAVGPOST=0.997;BRSQ=0.709;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7121;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150048135 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150048165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150048205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9179;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150048219 . T TA 106 PASS INDEL;BAVGPOST=0.994;BRSQ=0.559;LDAF=0.0071;AVGPOST=0.9929;RSQ=0.6001;ERATE=0.0013;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150048227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9434;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150048246 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150048321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7502;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150048397 . G GT 439 PASS INDEL;BAVGPOST=0.964;BRSQ=0.562;LDAF=0.0691;AVGPOST=0.9252;RSQ=0.5219;ERATE=0.0196;THETA=0.0008;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 150048418 . T TA 22 PASS INDEL;BAVGPOST=0.987;BRSQ=0.457;LDAF=0.0177;AVGPOST=0.9767;RSQ=0.4994;ERATE=0.0039;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150048559 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9779;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150048600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150048607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150048608 . CA C 18 PASS INDEL;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6296;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150048708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150048813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150048898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150048971 rs3833992 AT A 7758 PASS INDEL;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1084;AVGPOST=0.9900;RSQ=0.9624;ERATE=0.0004;THETA=0.0008;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 150049038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150049122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150049181 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0017;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150049182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9990;RSQ=0.9602;ERATE=0.0004;THETA=0.0018;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150049342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0126;AVGPOST=0.9967;RSQ=0.9238;ERATE=0.0006;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150049448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049747 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049888 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049918 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150049983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050128 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050149 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050159 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050163 . GA G 138 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4814;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7588;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050328 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8864;ERATE=0.0003;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150050422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150050802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150050855 . CG C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5224;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150051039 . TAATG T 92 PASS INDEL;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5203;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150051153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6417;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150051355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0104;AVGPOST=0.9994;RSQ=0.9740;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150051432 . T TTC 35115 PASS INDEL;BAVGPOST=0.978;BRSQ=0.772;LDAF=0.9245;AVGPOST=0.9307;RSQ=0.6408;ERATE=0.0086;THETA=0.0008;AC=2059;AN=2184 GT:DS:GL:BD 0.94276559 1 1 150051472 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6171;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150051678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150051809 . AAAG A 456 PASS INDEL;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0096;AVGPOST=0.9957;RSQ=0.8190;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150051820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6991;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150051839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0891;AVGPOST=0.9981;RSQ=0.9903;ERATE=0.0003;THETA=0.0010;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 150051933 . C CT 492 PASS INDEL;BAVGPOST=0.988;BRSQ=0.684;LDAF=0.0289;AVGPOST=0.9756;RSQ=0.6545;ERATE=0.0046;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150051944 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.726;LDAF=0.0327;AVGPOST=0.9760;RSQ=0.7390;ERATE=0.0022;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 150051954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0394;AVGPOST=0.9933;RSQ=0.9310;ERATE=0.0007;THETA=0.0008;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 150051966 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6743;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150051987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.592;LDAF=0.0418;AVGPOST=0.9492;RSQ=0.5107;ERATE=0.0084;THETA=0.0010;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150051989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4599;AVGPOST=0.9924;RSQ=0.9903;ERATE=0.0005;THETA=0.0012;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 150052249 . GTTTCGC G 297 PASS INDEL;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8365;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150052272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150052324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0142;AVGPOST=0.9996;RSQ=0.9866;ERATE=0.0003;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150052668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1638;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 150052693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150052706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0073;AVGPOST=0.9987;RSQ=0.9255;ERATE=0.0007;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150052715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150052716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150052722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8216;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150052799 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150052821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8790;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150052923 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150052947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150052962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150053043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8483;ERATE=0.0004;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150053133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0019;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150053172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5901;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150053208 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.856;LDAF=0.0366;AVGPOST=0.9869;RSQ=0.8461;ERATE=0.0010;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 150053320 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9364;ERATE=0.0003;THETA=0.0028;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150053321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9309;ERATE=0.0004;THETA=0.0029;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150053335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150053451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5054;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150053491 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9684;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150053492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9543;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150053510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.734;LDAF=0.0113;AVGPOST=0.9952;RSQ=0.8159;ERATE=0.0008;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150053549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.909;LDAF=0.1697;AVGPOST=0.9853;RSQ=0.9616;ERATE=0.0012;THETA=0.0058;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 150053612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0130;AVGPOST=0.9961;RSQ=0.8601;ERATE=0.0007;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150053644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0055;AVGPOST=0.9973;RSQ=0.8129;ERATE=0.0007;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150053688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.971;LDAF=0.1477;AVGPOST=0.9910;RSQ=0.9725;ERATE=0.0009;THETA=0.0010;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 150053761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150053949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8676;ERATE=0.0004;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150054017 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150054097 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6943;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150054457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150054468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0245;AVGPOST=0.9978;RSQ=0.9652;ERATE=0.0005;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150054599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150054616 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150054697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0077;AVGPOST=0.9972;RSQ=0.8645;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150054781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0036;AVGPOST=0.9962;RSQ=0.5296;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150054820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9985;RSQ=0.8933;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150054886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.633;LDAF=0.0167;AVGPOST=0.9839;RSQ=0.6195;ERATE=0.0052;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150054898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6460;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150054983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.757;LDAF=0.0083;AVGPOST=0.9954;RSQ=0.7942;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150055092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7681;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150055143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0066;AVGPOST=0.9988;RSQ=0.9192;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150055211 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0162;AVGPOST=0.9989;RSQ=0.9720;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150055240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6298;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150055312 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8955;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150055330 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055397 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1497;AVGPOST=0.9967;RSQ=0.9915;ERATE=0.0006;THETA=0.0002;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 150055514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9451;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150055565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.764;LDAF=0.0111;AVGPOST=0.9928;RSQ=0.7538;ERATE=0.0031;THETA=0.0024;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150055666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150055804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150055895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150055921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150056040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150056061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150056087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8498;ERATE=0.0006;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150056236 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150056479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150056646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0928;AVGPOST=0.9982;RSQ=0.9920;ERATE=0.0003;THETA=0.0014;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 150056666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0146;AVGPOST=0.9974;RSQ=0.9224;ERATE=0.0005;THETA=0.0017;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150056775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6059;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150056895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6231;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150056896 . TG T 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0036;AVGPOST=0.9966;RSQ=0.6223;ERATE=0.0005;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150056897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7899;ERATE=0.0005;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150056907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150057182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0003;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150057207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150057290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8765;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150057299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0748;ERATE=0.0003;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150057391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150057540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8322;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150057705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9271;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150057728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3085;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0001;AC=674;AN=2184 GT:DS:GL:BD 0.30860806 0 1 150057830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7298;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150057854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4162;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150057874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0030;AVGPOST=0.9973;RSQ=0.6456;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150057995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6870;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150058384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7943;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150058385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6589;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150058409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8147;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150058539 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150058605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150058905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0731;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 150058919 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150059015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150059033 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8918;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150059054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150059093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0103;AVGPOST=0.9990;RSQ=0.9596;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150059123 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150059139 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9902;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150059178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9452;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150059257 . C CA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4646;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150059263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150059310 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9552;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150059355 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150059413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150059525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2355;AVGPOST=0.9978;RSQ=0.9947;ERATE=0.0006;THETA=0.0007;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 150059813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7326;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150059932 . TTTGAC T 172 PASS INDEL;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5134;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150060003 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6958;AVGPOST=0.9947;RSQ=0.9902;ERATE=0.0018;THETA=0.0008;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 150060019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150060213 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.5916;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150060498 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9991;RSQ=0.9716;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150060540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5638;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150060614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4839;ERATE=0.0006;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150060722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0048;AVGPOST=0.9956;RSQ=0.6418;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150060907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0100;AVGPOST=0.9980;RSQ=0.9140;ERATE=0.0005;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150060942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150061081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9550;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150061205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2353;AVGPOST=0.9937;RSQ=0.9854;ERATE=0.0006;THETA=0.0005;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 150061247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.603;LDAF=0.0052;AVGPOST=0.9962;RSQ=0.7054;ERATE=0.0007;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150061274 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2724;AVGPOST=0.9958;RSQ=0.9904;ERATE=0.0006;THETA=0.0003;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 150061312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3999;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150061482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9570;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150061487 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7509;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150061746 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150061847 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150061950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.591;LDAF=0.0044;AVGPOST=0.9943;RSQ=0.4325;ERATE=0.0013;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150062031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6665;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150062175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150062189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0036;AVGPOST=0.9943;RSQ=0.3724;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150062228 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150062278 MERGED_DEL_2_3072 A ADELA . . SV;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5249;ERATE=0.0006;THETA=0.0004;CIEND=-64;89;CIPOS=-18;143;END=39409958;SOURCE=BreakDancer_39408336_39409965;GenomeStrip_39408257 GT:DS:GL:BD 0.00091575 0 1 150062504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0202;AVGPOST=0.9989;RSQ=0.9805;ERATE=0.0005;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150062523 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.966;LDAF=0.1087;AVGPOST=0.9940;RSQ=0.9773;ERATE=0.0006;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 150062587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0070;AVGPOST=0.9958;RSQ=0.7645;ERATE=0.0008;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150062596 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150062660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1071;AVGPOST=0.9974;RSQ=0.9900;ERATE=0.0003;THETA=0.0002;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150062792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1335;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150062830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150062878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0982;AVGPOST=0.9989;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 150062949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9496;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150062950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.9059;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150063191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0386;AVGPOST=0.9969;RSQ=0.9718;ERATE=0.0005;THETA=0.0009;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150063382 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1340;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0010;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150063467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9030;AVGPOST=0.9973;RSQ=0.9878;ERATE=0.0006;THETA=0.0004;AC=1975;AN=2184 GT:DS:GL:BD 0.90430403 1 1 150063485 . CTGAGCAACA C 1161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0052;AVGPOST=0.9983;RSQ=0.8687;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150063507 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150063613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150063634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8318;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150063679 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0235;AVGPOST=0.9990;RSQ=0.9844;ERATE=0.0003;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150063697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0246;AVGPOST=0.9966;RSQ=0.9537;ERATE=0.0003;THETA=0.0016;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150063788 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.8096;ERATE=0.0007;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150063813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150063917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0032;AVGPOST=0.9967;RSQ=0.6224;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150063946 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0250;AVGPOST=0.9919;RSQ=0.8852;ERATE=0.0005;THETA=0.0002;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150063950 rs35272810 TG T 1890 PASS INDEL;BAVGPOST=0.988;BRSQ=0.817;LDAF=0.0361;AVGPOST=0.9972;RSQ=0.9640;ERATE=0.0006;THETA=0.0044;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 150064050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.974;LDAF=0.1637;AVGPOST=0.9937;RSQ=0.9827;ERATE=0.0009;THETA=0.0002;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 150064059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0115;AVGPOST=0.9975;RSQ=0.9174;ERATE=0.0008;THETA=0.0090;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150064225 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0053;AVGPOST=0.9984;RSQ=0.8859;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150064313 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150064323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0836;AVGPOST=0.9967;RSQ=0.9825;ERATE=0.0005;THETA=0.0019;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 150064357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4486;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150064363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.960;LDAF=0.1369;AVGPOST=0.9906;RSQ=0.9722;ERATE=0.0003;THETA=0.0011;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 150064403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6533;ERATE=0.0004;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150064412 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.5568;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150064435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.962;LDAF=0.8955;AVGPOST=0.9903;RSQ=0.9631;ERATE=0.0010;THETA=0.0003;AC=1963;AN=2184 GT:DS:GL:BD 0.89880955 1 1 150064456 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0834;AVGPOST=0.9975;RSQ=0.9857;ERATE=0.0004;THETA=0.0027;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 150064516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150064560 . T TG 258 PASS INDEL;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6458;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150064627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150064628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0404;AVGPOST=0.9991;RSQ=0.9903;ERATE=0.0003;THETA=0.0009;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 150064768 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150064788 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150064912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150065185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150065294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.7067;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150065316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7209;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150065445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7330;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150065505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6799;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150065560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8699;ERATE=0.0003;THETA=0.0068;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150065694 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150065698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.704;BRSQ=0.440;LDAF=0.4900;AVGPOST=0.7402;RSQ=0.4814;ERATE=0.0706;THETA=0.0005;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 150065777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.685;LDAF=0.2186;AVGPOST=0.8687;RSQ=0.6677;ERATE=0.0098;THETA=0.0006;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 150065790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.697;LDAF=0.1833;AVGPOST=0.9135;RSQ=0.7580;ERATE=0.0005;THETA=0.0005;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150065792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.698;LDAF=0.1838;AVGPOST=0.9116;RSQ=0.7510;ERATE=0.0009;THETA=0.0003;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 150065793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.663;LDAF=0.1770;AVGPOST=0.9052;RSQ=0.7237;ERATE=0.0037;THETA=0.0006;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 150065799 . TG T 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5596;ERATE=0.0005;THETA=0.0156;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150065978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2179;AVGPOST=0.9898;RSQ=0.9803;ERATE=0.0004;THETA=0.0007;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 150066144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.882;LDAF=0.0084;AVGPOST=0.9963;RSQ=0.8202;ERATE=0.0005;THETA=0.0022;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150066233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3759;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0003;THETA=0.0001;AC=821;AN=2184 GT:DS:GL:BD 0.37591577 0 1 150066349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5708;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150066410 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1575;AVGPOST=0.9966;RSQ=0.9902;ERATE=0.0006;THETA=0.0003;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150066553 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.727;LDAF=0.0087;AVGPOST=0.9934;RSQ=0.6959;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150066621 . CA C 333 PASS INDEL;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8477;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150066638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8552;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150066770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.940;LDAF=0.9053;AVGPOST=0.9846;RSQ=0.9335;ERATE=0.0017;THETA=0.0003;AC=1986;AN=2184 GT:DS:GL:BD 0.90934068 1 1 150067013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3773;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=825;AN=2184 GT:DS:GL:BD 0.37774727 0 1 150067270 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6244;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150067303 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150067325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1436;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 150067416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2201;AVGPOST=0.9984;RSQ=0.9966;ERATE=0.0003;THETA=0.0009;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 150067483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0823;AVGPOST=0.9989;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 150067951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150067993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0098;AVGPOST=0.9991;RSQ=0.9649;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150068068 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7794;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150068226 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150068252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150068295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7797;ERATE=0.0009;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150068361 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.9014;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150068477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8456;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150068483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150068602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150068637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0803;AVGPOST=0.9981;RSQ=0.9887;ERATE=0.0004;THETA=0.0006;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 150068696 . AT A 1692 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0175;AVGPOST=0.9984;RSQ=0.9625;ERATE=0.0003;THETA=0.0018;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150068749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.6629;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150068772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5726;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150068783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150068874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9775;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150068902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150068972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8167;AVGPOST=0.9934;RSQ=0.9847;ERATE=0.0003;THETA=0.0054;AC=1783;AN=2184 GT:DS:GL:BD 0.81639194 1 1 150068993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7369;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150069161 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0179;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150069221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9847;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150069250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8493;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150069397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0239;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150069606 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9688;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150069651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.778;LDAF=0.0090;AVGPOST=0.9957;RSQ=0.8166;ERATE=0.0005;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150069765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8998;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150069811 . ACT A 173 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4770;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150069829 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150069899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.824;LDAF=0.0389;AVGPOST=0.9788;RSQ=0.7919;ERATE=0.0064;THETA=0.0008;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150070058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0133;AVGPOST=0.9988;RSQ=0.9701;ERATE=0.0003;THETA=0.0012;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150070068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.7982;ERATE=0.0005;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150070093 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.885;LDAF=0.0087;AVGPOST=0.9967;RSQ=0.8702;ERATE=0.0003;THETA=0.0027;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150070121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.642;LDAF=0.0038;AVGPOST=0.9960;RSQ=0.5727;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150070124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150070128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0056;AVGPOST=0.9965;RSQ=0.7605;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150070218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5309;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150070251 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0079;AVGPOST=0.9971;RSQ=0.8700;ERATE=0.0003;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150070288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0054;AVGPOST=0.9963;RSQ=0.7468;ERATE=0.0005;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150070299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0262;AVGPOST=0.9933;RSQ=0.9013;ERATE=0.0019;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150070418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150070459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0432;AVGPOST=0.9984;RSQ=0.9875;ERATE=0.0004;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150070472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.713;LDAF=0.0555;AVGPOST=0.9552;RSQ=0.6814;ERATE=0.0097;THETA=0.0028;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 150070479 rs34726691 G GC 420 PASS INDEL;BAVGPOST=0.970;BRSQ=0.563;LDAF=0.0410;AVGPOST=0.9694;RSQ=0.7404;ERATE=0.0006;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150070522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.872;LDAF=0.0092;AVGPOST=0.9968;RSQ=0.8677;ERATE=0.0006;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150070543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0011;AVGPOST=0.9983;RSQ=0.3084;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150070548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6376;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150070554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.868;LDAF=0.0879;AVGPOST=0.9798;RSQ=0.9098;ERATE=0.0016;THETA=0.0006;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 150070601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.909;LDAF=0.0746;AVGPOST=0.9926;RSQ=0.9612;ERATE=0.0004;THETA=0.0005;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 150070613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.911;LDAF=0.0763;AVGPOST=0.9925;RSQ=0.9622;ERATE=0.0006;THETA=0.0008;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 150070621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0235;AVGPOST=0.9977;RSQ=0.9617;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150070689 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150070730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0102;AVGPOST=0.9982;RSQ=0.9399;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150070770 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.932;LDAF=0.1221;AVGPOST=0.9758;RSQ=0.9189;ERATE=0.0083;THETA=0.0008;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 150070854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.957;LDAF=0.0739;AVGPOST=0.9941;RSQ=0.9708;ERATE=0.0004;THETA=0.0009;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 150070880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0759;AVGPOST=0.9974;RSQ=0.9870;ERATE=0.0004;THETA=0.0007;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 150070918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150070938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.964;LDAF=0.0800;AVGPOST=0.9910;RSQ=0.9511;ERATE=0.0006;THETA=0.0008;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 150071011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0231;AVGPOST=0.9982;RSQ=0.9730;ERATE=0.0003;THETA=0.0055;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150071078 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0131;AVGPOST=0.9994;RSQ=0.9787;ERATE=0.0003;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150071162 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8693;ERATE=0.0004;THETA=0.0080;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150071231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.969;LDAF=0.1210;AVGPOST=0.9910;RSQ=0.9690;ERATE=0.0008;THETA=0.0011;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 150071304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150071307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150071337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5362;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150071345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6591;ERATE=0.0004;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150071367 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6744;ERATE=0.0005;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150071376 . GA G 533 PASS INDEL;BAVGPOST=0.996;BRSQ=0.847;LDAF=0.0133;AVGPOST=0.9982;RSQ=0.9468;ERATE=0.0003;THETA=0.0038;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150071486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.3699;ERATE=0.0007;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150071614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0050;AVGPOST=0.9930;RSQ=0.4215;ERATE=0.0012;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150071639 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9077;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150071710 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.850;LDAF=0.0190;AVGPOST=0.9920;RSQ=0.8374;ERATE=0.0006;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150071775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.917;LDAF=0.1702;AVGPOST=0.9766;RSQ=0.9434;ERATE=0.0014;THETA=0.0027;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 150071799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.520;LDAF=0.0125;AVGPOST=0.9868;RSQ=0.5904;ERATE=0.0009;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150071811 . AAAAAT A 50 PASS INDEL;BAVGPOST=0.999;BRSQ=0.397;LDAF=0.0039;AVGPOST=0.9945;RSQ=0.4236;ERATE=0.0009;THETA=0.0032;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150071825 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.339;LDAF=0.0547;AVGPOST=0.9305;RSQ=0.5109;ERATE=0.0053;THETA=0.0087;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150071894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9806;ERATE=0.0003;THETA=0.0034;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150072026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0574;AVGPOST=0.9984;RSQ=0.9887;ERATE=0.0005;THETA=0.0094;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 150072031 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0123;AVGPOST=0.9977;RSQ=0.9309;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150072148 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.1680;AVGPOST=0.9938;RSQ=0.9850;ERATE=0.0005;THETA=0.0007;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 150072161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9140;ERATE=0.0003;THETA=0.0020;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150072164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150072165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9185;ERATE=0.0003;THETA=0.0031;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150072184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0039;AVGPOST=0.9990;RSQ=0.8888;ERATE=0.0004;THETA=0.0039;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150072233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1566;AVGPOST=0.9896;RSQ=0.9700;ERATE=0.0004;THETA=0.0007;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 150072284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150072317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.958;LDAF=0.1563;AVGPOST=0.9905;RSQ=0.9753;ERATE=0.0007;THETA=0.0005;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 150072368 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.919;LDAF=0.1993;AVGPOST=0.9633;RSQ=0.9237;ERATE=0.0111;THETA=0.0006;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 150072412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0048;AVGPOST=0.9959;RSQ=0.7211;ERATE=0.0004;THETA=0.0054;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150072443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0123;AVGPOST=0.9986;RSQ=0.9503;ERATE=0.0005;THETA=0.0043;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150072482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.503;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5524;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150072610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.965;LDAF=0.1825;AVGPOST=0.9710;RSQ=0.9307;ERATE=0.0035;THETA=0.0012;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 150072627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.542;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6449;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150072706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.695;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8738;ERATE=0.0005;THETA=0.0047;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150072713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0393;AVGPOST=0.9929;RSQ=0.9374;ERATE=0.0005;THETA=0.0030;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 150072757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.937;LDAF=0.1639;AVGPOST=0.9903;RSQ=0.9753;ERATE=0.0008;THETA=0.0015;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 150072775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.5834;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150072783 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0132;AVGPOST=0.9979;RSQ=0.9416;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150072794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.905;LDAF=0.1715;AVGPOST=0.9745;RSQ=0.9396;ERATE=0.0029;THETA=0.0012;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 150072797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.828;LDAF=0.0245;AVGPOST=0.9952;RSQ=0.9230;ERATE=0.0005;THETA=0.0011;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150072811 . C CAT 167 PASS INDEL;BAVGPOST=0.982;BRSQ=0.421;LDAF=0.0204;AVGPOST=0.9788;RSQ=0.5873;ERATE=0.0023;THETA=0.0056;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150072847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.950;LDAF=0.1609;AVGPOST=0.9824;RSQ=0.9597;ERATE=0.0009;THETA=0.0004;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 150072896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1692;AVGPOST=0.9950;RSQ=0.9880;ERATE=0.0007;THETA=0.0015;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 150072930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4217;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150073220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5621;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150073379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150073397 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0877;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150073616 . A AT 1503 PASS INDEL;BAVGPOST=0.995;BRSQ=0.909;LDAF=0.0270;AVGPOST=0.9885;RSQ=0.8250;ERATE=0.0024;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150073811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8870;AVGPOST=0.9980;RSQ=0.9913;ERATE=0.0005;THETA=0.0003;AC=1938;AN=2184 GT:DS:GL:BD 0.88736266 1 1 150073831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150074393 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1566;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0005;THETA=0.0003;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150074399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0100;AVGPOST=0.9979;RSQ=0.9224;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150074416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9987;RSQ=0.9558;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150074447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5472;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150074460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7030;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150074606 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150074637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6073;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150074745 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150074820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0879;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150074862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150074997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150075011 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7957;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150075108 . C CTAAAT 102 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3917;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150075141 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150075330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1010;AVGPOST=0.9985;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150075364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0082;AVGPOST=0.9976;RSQ=0.8934;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150075421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8214;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150075440 . AT A 2782 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0393;AVGPOST=0.9975;RSQ=0.9695;ERATE=0.0008;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 150075468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0448;AVGPOST=0.9954;RSQ=0.9526;ERATE=0.0011;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150075513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0875;AVGPOST=0.9989;RSQ=0.9935;ERATE=0.0004;THETA=0.0002;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150075708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6517;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150075725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1614;AVGPOST=0.9964;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 150075744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6684;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150075857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150075886 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8483;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150075953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0042;AVGPOST=0.9978;RSQ=0.8102;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150075969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1080;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150076136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7996;ERATE=0.0012;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150076391 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150076405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150076443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150076473 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0010;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150076491 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7713;ERATE=0.0013;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150076492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9976;RSQ=0.3083;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150076501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0879;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150076566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.7126;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150076666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0136;AVGPOST=0.9992;RSQ=0.9737;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150076725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150076789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0003;THETA=0.0001;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150076868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8933;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150076895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150076943 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9179;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150077062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8949;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150077333 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150077520 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150077535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150077626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150077646 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7927;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150077794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150077891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8183;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150077947 . GA G 496 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9096;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150078061 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5309;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3787;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 150078314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8734;ERATE=0.0002;THETA=0.0001;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150078324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2469;AVGPOST=0.9990;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 150078483 . G GC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0107;AVGPOST=0.9991;RSQ=0.9671;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150078616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9304;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150078672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6981;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150078892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150079021 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0076;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150079028 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150079111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2367;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 150079179 . G GC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150079235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150079300 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4219;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 150079532 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150079621 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0002;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150079635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150079675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7048;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150079737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150079814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0357;AVGPOST=0.9996;RSQ=0.9949;ERATE=0.0002;THETA=0.0002;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150079815 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0320;AVGPOST=0.9984;RSQ=0.9802;ERATE=0.0003;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150080036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150080055 rs58229003 CA C 22636 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2380;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 150080058 . AT A 334 PASS INDEL;BAVGPOST=0.878;BRSQ=0.475;LDAF=0.1011;AVGPOST=0.9308;RSQ=0.7458;ERATE=0.0009;THETA=0.0007;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 150080062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150080097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0402;AVGPOST=0.9996;RSQ=0.9956;ERATE=0.0003;THETA=0.0010;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 150080122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150080159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150080355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0002;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150080371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150080424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150080479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9666;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150080627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6107;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150080633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9733;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150080838 . T TG 506 PASS INDEL;BAVGPOST=0.752;BRSQ=0.185;LDAF=0.2092;AVGPOST=0.7630;RSQ=0.4096;ERATE=0.0230;THETA=0.0003;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 150080862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8718;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150080894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8534;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150081102 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150081218 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9910;ERATE=0.0002;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150081223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5619;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150081286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9461;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150081305 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8609;ERATE=0.0004;THETA=0.0034;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150081379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9206;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150081507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2495;AVGPOST=0.9971;RSQ=0.9938;ERATE=0.0006;THETA=0.0011;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 150081529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150081563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2404;AVGPOST=0.9979;RSQ=0.9950;ERATE=0.0008;THETA=0.0005;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 150081585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9200;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150081627 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150081748 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150081749 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2495;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0002;THETA=0.0003;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 150081771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0132;AVGPOST=0.9993;RSQ=0.9806;ERATE=0.0002;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150081892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0002;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150081900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150081998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6843;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150082111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150082662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.752;LDAF=0.0066;AVGPOST=0.9962;RSQ=0.7595;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150082796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0050;AVGPOST=0.9967;RSQ=0.7696;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150082988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.599;LDAF=0.0221;AVGPOST=0.9743;RSQ=0.5581;ERATE=0.0037;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150083020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.660;LDAF=0.0043;AVGPOST=0.9945;RSQ=0.4872;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150083044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150083065 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150083089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9688;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150083264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150083271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7404;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150083468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150083651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0369;AVGPOST=0.9992;RSQ=0.9896;ERATE=0.0004;THETA=0.0013;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 150083803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0269;AVGPOST=0.9993;RSQ=0.9889;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150083856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8817;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150083902 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2263;AVGPOST=0.9972;RSQ=0.9938;ERATE=0.0006;THETA=0.0007;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150083917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2255;AVGPOST=0.9974;RSQ=0.9940;ERATE=0.0008;THETA=0.0005;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150083959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.958;LDAF=0.2184;AVGPOST=0.9909;RSQ=0.9811;ERATE=0.0008;THETA=0.0005;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 150084027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.526;LDAF=0.9060;AVGPOST=0.9129;RSQ=0.5967;ERATE=0.0137;THETA=0.0006;AC=2025;AN=2184 GT:DS:GL:BD 0.92719781 1 1 150084057 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.910;LDAF=0.2262;AVGPOST=0.9708;RSQ=0.9392;ERATE=0.0032;THETA=0.0003;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 150084061 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.942;LDAF=0.2194;AVGPOST=0.9929;RSQ=0.9855;ERATE=0.0006;THETA=0.0008;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 150084095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4999;AVGPOST=0.9883;RSQ=0.9818;ERATE=0.0012;THETA=0.0022;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 150084153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6610;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150084250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6668;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150084259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9791;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150084325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4984;AVGPOST=0.9963;RSQ=0.9947;ERATE=0.0004;THETA=0.0002;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 150084508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5358;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150084696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0041;AVGPOST=0.9969;RSQ=0.7537;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150084700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150084711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0468;AVGPOST=0.9965;RSQ=0.9715;ERATE=0.0006;THETA=0.0008;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 150084739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6866;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150084791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9722;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150084852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150084887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150085002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0051;AVGPOST=0.9958;RSQ=0.6765;ERATE=0.0007;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150085009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5721;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150085010 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0235;AVGPOST=0.9972;RSQ=0.9523;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150085210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.2236;AVGPOST=0.9900;RSQ=0.9799;ERATE=0.0010;THETA=0.0008;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 150085212 rs34390792 CCTT C 17925 PASS INDEL;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1628;AVGPOST=0.9963;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 150085319 rs61706131 A AT 8932 PASS INDEL;BAVGPOST=0.956;BRSQ=0.872;LDAF=0.2255;AVGPOST=0.8881;RSQ=0.7590;ERATE=0.0250;THETA=0.0027;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 150085362 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.817;LDAF=0.0374;AVGPOST=0.9920;RSQ=0.9194;ERATE=0.0005;THETA=0.0007;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 150085447 . T TC 40 PASS INDEL;BAVGPOST=0.962;BRSQ=0.223;LDAF=0.0312;AVGPOST=0.9560;RSQ=0.4462;ERATE=0.0018;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150085511 . CTT C 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150085600 . CTGTT C 2436 PASS INDEL;BAVGPOST=0.991;BRSQ=0.919;LDAF=0.0568;AVGPOST=0.9912;RSQ=0.9402;ERATE=0.0008;THETA=0.0002;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 150085754 . TTTGTTA T 9263 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0502;AVGPOST=0.9970;RSQ=0.9811;ERATE=0.0003;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 150085757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1626;AVGPOST=0.9979;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 150085787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150086002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150086029 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150086133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2258;AVGPOST=0.9982;RSQ=0.9958;ERATE=0.0007;THETA=0.0008;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 150086150 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7302;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150086177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.5897;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150086347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150086439 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2249;AVGPOST=0.9973;RSQ=0.9938;ERATE=0.0006;THETA=0.0003;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150086443 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7641;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150086478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5285;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150086495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7252;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150086573 . C CA 2559 PASS INDEL;BAVGPOST=0.961;BRSQ=0.908;LDAF=0.2713;AVGPOST=0.8869;RSQ=0.7868;ERATE=0.0291;THETA=0.0004;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 150086628 . A AT 17376 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2279;AVGPOST=0.9968;RSQ=0.9927;ERATE=0.0007;THETA=0.0005;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 150086634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0424;AVGPOST=0.9991;RSQ=0.9906;ERATE=0.0003;THETA=0.0009;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 150086695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7450;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150086712 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0104;AVGPOST=0.9991;RSQ=0.9656;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150087014 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2245;AVGPOST=0.9975;RSQ=0.9946;ERATE=0.0006;THETA=0.0002;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 150087292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5277;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150087301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6819;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150087386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8395;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150087388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2256;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150087401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.5426;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150087484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2280;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0006;THETA=0.0009;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 150087575 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2256;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0006;THETA=0.0012;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150087679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2255;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0024;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150087738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8014;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150087985 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7153;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150088189 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8241;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150088220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1732;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 150088276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2248;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150088299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150088333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0277;AVGPOST=0.9995;RSQ=0.9907;ERATE=0.0004;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 150088339 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0263;AVGPOST=0.9966;RSQ=0.9521;ERATE=0.0005;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 150088388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150088433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2254;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150088460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150088626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150088726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150088759 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5175;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150088817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0611;AVGPOST=0.9983;RSQ=0.9868;ERATE=0.0004;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150088825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150088882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150088920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0093;AVGPOST=0.9946;RSQ=0.7845;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150088942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150089174 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9389;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150089264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150089444 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150089499 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150089672 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8834;ERATE=0.0011;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150089676 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150089779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7039;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150089893 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150089907 . GAAGA G 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.4390;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150089999 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150090154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6992;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150090253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150090314 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8664;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150090339 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9023;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150090447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6900;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150090627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8425;ERATE=0.0010;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150090855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150090864 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150091232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8389;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150091509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150091513 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0380;AVGPOST=0.9986;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150091760 . T TA 696 PASS INDEL;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9071;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150091787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150091826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9625;ERATE=0.0003;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150091945 . TTA T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150092165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2529;AVGPOST=0.9902;RSQ=0.9797;ERATE=0.0064;THETA=0.0005;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 150092265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7961;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150092271 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9414;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150092413 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150092427 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8101;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150092530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4115;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150092566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7972;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150092672 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150093035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.753;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.7456;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150093414 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150093454 . ATAAT A 28 PASS INDEL;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3780;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150093454 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7716;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150093472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150093792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7406;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150093813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7008;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150093946 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150094005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150094085 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.908;LDAF=0.0198;AVGPOST=0.9980;RSQ=0.9637;ERATE=0.0003;THETA=0.0010;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150094138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150094161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.967;LDAF=0.1350;AVGPOST=0.9965;RSQ=0.9891;ERATE=0.0003;THETA=0.0009;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 150094250 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4751;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150094262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.580;LDAF=0.0190;AVGPOST=0.9805;RSQ=0.5967;ERATE=0.0048;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150094293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0740;AVGPOST=0.9985;RSQ=0.9914;ERATE=0.0004;THETA=0.0009;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 150094397 rs34844706 A AAAT 3831 PASS INDEL;BAVGPOST=0.985;BRSQ=0.821;LDAF=0.0560;AVGPOST=0.9939;RSQ=0.9525;ERATE=0.0004;THETA=0.0007;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 150094417 . A AT 1393 PASS INDEL;BAVGPOST=0.985;BRSQ=0.800;LDAF=0.0483;AVGPOST=0.9868;RSQ=0.8944;ERATE=0.0006;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150094419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0121;AVGPOST=0.9985;RSQ=0.9639;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150094483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0335;AVGPOST=0.9982;RSQ=0.9794;ERATE=0.0003;THETA=0.0010;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 150094522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150094528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6283;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150094531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.844;LDAF=0.0220;AVGPOST=0.9975;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150094578 . A AC 5976 PASS INDEL;BAVGPOST=0.987;BRSQ=0.913;LDAF=0.0711;AVGPOST=0.9959;RSQ=0.9789;ERATE=0.0005;THETA=0.0011;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 150094706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.553;LDAF=0.0097;AVGPOST=0.9872;RSQ=0.4968;ERATE=0.0034;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150094737 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3436;ERATE=0.0006;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150094738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0621;AVGPOST=0.9993;RSQ=0.9948;ERATE=0.0003;THETA=0.0053;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 150094787 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8288;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150094918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0279;AVGPOST=0.9975;RSQ=0.9681;ERATE=0.0004;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150094950 rs111827056 G GT 299 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8512;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150094960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150095036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9994;RSQ=0.9140;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150095085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7858;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150095086 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9502;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150095227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0272;AVGPOST=0.9974;RSQ=0.9681;ERATE=0.0003;THETA=0.0011;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 150095340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150095345 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.895;LDAF=0.0189;AVGPOST=0.9986;RSQ=0.9698;ERATE=0.0003;THETA=0.0019;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150095346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8083;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150095456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9429;ERATE=0.0004;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150095487 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.833;LDAF=0.0143;AVGPOST=0.9954;RSQ=0.8894;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150095513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150095612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7121;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150095626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0550;AVGPOST=0.9989;RSQ=0.9922;ERATE=0.0003;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 150095645 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7935;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150095745 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150095746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9551;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150095793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0544;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 150095799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5841;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150095912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6286;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150096064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150096072 . C CT 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4797;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150096197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5798;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150096261 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0086;AVGPOST=0.9980;RSQ=0.9155;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150096327 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8732;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150096329 . AG A 2942 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0243;AVGPOST=0.9967;RSQ=0.9574;ERATE=0.0003;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150096351 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1403;AVGPOST=0.9952;RSQ=0.9880;ERATE=0.0005;THETA=0.0007;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 150096369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.6792;AVGPOST=0.9856;RSQ=0.9741;ERATE=0.0004;THETA=0.0009;AC=1489;AN=2184 GT:DS:GL:BD 0.68177658 1 1 150096391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0051;AVGPOST=0.9981;RSQ=0.8669;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150096541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0099;AVGPOST=0.9986;RSQ=0.9429;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150096650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0046;AVGPOST=0.9987;RSQ=0.8905;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150096651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.950;LDAF=0.1540;AVGPOST=0.9795;RSQ=0.9399;ERATE=0.0003;THETA=0.0006;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 150096663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150096782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0187;AVGPOST=0.9969;RSQ=0.9375;ERATE=0.0006;THETA=0.0027;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150097008 rs35814570 TTAGG T 6539 PASS INDEL;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0256;AVGPOST=0.9987;RSQ=0.9823;ERATE=0.0003;THETA=0.0013;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 150097070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150097107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.3120;ERATE=0.0010;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150097114 . CCT C 881 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9604;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150097140 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4876;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150097366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7317;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150097389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150097401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.834;LDAF=0.0223;AVGPOST=0.9931;RSQ=0.8703;ERATE=0.0005;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150097578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150097703 rs74346184 ATC A 30851 PASS INDEL;BAVGPOST=0.992;BRSQ=0.979;LDAF=0.2629;AVGPOST=0.9860;RSQ=0.9712;ERATE=0.0028;THETA=0.0015;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 150097822 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150097840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0121;AVGPOST=0.9962;RSQ=0.8710;ERATE=0.0004;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150097963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6626;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150098153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5357;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150098234 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9996;RSQ=0.9927;ERATE=0.0003;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150098299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8328;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150098325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0278;AVGPOST=0.9993;RSQ=0.9888;ERATE=0.0003;THETA=0.0014;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 150098347 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9046;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150098438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150098482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6562;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150098534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150098567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8522;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150098618 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0020;AVGPOST=0.9976;RSQ=0.5279;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150098698 . C CCTT 4232 PASS INDEL;BAVGPOST=0.949;BRSQ=0.727;LDAF=0.0930;AVGPOST=0.9603;RSQ=0.8469;ERATE=0.0039;THETA=0.0006;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 150098768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8692;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150098791 . TA T 277 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150098950 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150098958 . C CT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150099042 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0002;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150099071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0397;AVGPOST=0.9993;RSQ=0.9935;ERATE=0.0002;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 150099124 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150099148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150099259 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7511;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150099355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9115;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150099440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150099648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1581;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0003;THETA=0.0009;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 150099832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150099875 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7697;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150100292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8095;ERATE=0.0004;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150100326 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1568;AVGPOST=0.9987;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150100469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1572;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150100663 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9325;ERATE=0.0002;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150100715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150100793 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8852;ERATE=0.0002;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150100795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9794;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150100973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7225;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150101026 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9538;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150101164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150101181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150101207 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8902;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150101358 . ATACT A 442 PASS INDEL;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8363;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150101524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.949;LDAF=0.1559;AVGPOST=0.9952;RSQ=0.9862;ERATE=0.0005;THETA=0.0006;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150101685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0061;AVGPOST=0.9958;RSQ=0.7389;ERATE=0.0006;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150101748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.975;LDAF=0.3609;AVGPOST=0.9917;RSQ=0.9868;ERATE=0.0009;THETA=0.0006;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 150101772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6068;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150101773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150101944 . CTG C 196 PASS INDEL;BAVGPOST=0.983;BRSQ=0.679;LDAF=0.0428;AVGPOST=0.9553;RSQ=0.5569;ERATE=0.0188;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150102006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8820;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150102027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7294;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150102039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7948;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150102052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.579;LDAF=0.0040;AVGPOST=0.9944;RSQ=0.5114;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150102282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4719;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150102310 . GT G 1243 PASS INDEL;BAVGPOST=0.960;BRSQ=0.840;LDAF=0.1323;AVGPOST=0.9666;RSQ=0.9036;ERATE=0.0009;THETA=0.0005;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 150102338 . TG T 12543 PASS INDEL;BAVGPOST=0.972;BRSQ=0.925;LDAF=0.1537;AVGPOST=0.9882;RSQ=0.9685;ERATE=0.0010;THETA=0.0007;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 150102339 . GC G 812 PASS INDEL;BAVGPOST=0.960;BRSQ=0.845;LDAF=0.1407;AVGPOST=0.9775;RSQ=0.9355;ERATE=0.0006;THETA=0.0014;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 150102342 . T TG 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4118;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150102357 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.948;LDAF=0.1536;AVGPOST=0.9870;RSQ=0.9660;ERATE=0.0008;THETA=0.0004;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 150102501 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0158;AVGPOST=0.9906;RSQ=0.7606;ERATE=0.0007;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150102509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0049;AVGPOST=0.9960;RSQ=0.6777;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150102747 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.970;LDAF=0.1008;AVGPOST=0.9975;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 150102841 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.970;LDAF=0.0997;AVGPOST=0.9979;RSQ=0.9915;ERATE=0.0002;THETA=0.0013;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150102842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1537;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0002;THETA=0.0005;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 150102862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5682;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150103090 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5110;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150103417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1585;AVGPOST=0.9979;RSQ=0.9948;ERATE=0.0005;THETA=0.0003;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 150103466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150103490 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0250;AVGPOST=0.9979;RSQ=0.9670;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150103542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150103583 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150103648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150103746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0046;AVGPOST=0.9985;RSQ=0.8928;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150103839 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.958;LDAF=0.0225;AVGPOST=0.9982;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150103899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150103976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150104099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150104165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150104192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0398;AVGPOST=0.9990;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 150104341 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9426;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150104346 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150104358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5777;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150104428 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5423;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150104458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9902;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0003;THETA=0.0002;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 150104497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1142;AVGPOST=0.9978;RSQ=0.9907;ERATE=0.0004;THETA=0.0005;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 150104553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.804;LDAF=0.0086;AVGPOST=0.9982;RSQ=0.9130;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150104788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0030;AVGPOST=0.9961;RSQ=0.4885;ERATE=0.0008;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150105047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0077;AVGPOST=0.9990;RSQ=0.9420;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150105048 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0090;AVGPOST=0.9984;RSQ=0.9263;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150105050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9401;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150105158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6169;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150105244 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8786;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150105301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1739;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 150105313 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6321;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150105343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4670;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150105364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9506;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150105404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150105454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8969;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150105506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0103;AVGPOST=0.9953;RSQ=0.8229;ERATE=0.0007;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150105756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9470;AVGPOST=0.9973;RSQ=0.9790;ERATE=0.0005;THETA=0.0006;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 150105822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0261;AVGPOST=0.9944;RSQ=0.9232;ERATE=0.0005;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150105904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4283;AVGPOST=0.9945;RSQ=0.9919;ERATE=0.0006;THETA=0.0003;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 150105911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150106123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150106246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0290;AVGPOST=0.9984;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150106334 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8623;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150106339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6267;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150106572 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0163;AVGPOST=0.9991;RSQ=0.9767;ERATE=0.0005;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150106651 rs76006198 TG T 4816 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0404;AVGPOST=0.9982;RSQ=0.9822;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150106753 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1136;AVGPOST=0.9981;RSQ=0.9914;ERATE=0.0004;THETA=0.0006;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 150107029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150107201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150107395 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150107510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5892;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150107542 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0161;AVGPOST=0.9995;RSQ=0.9899;ERATE=0.0002;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150107603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150107632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1741;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 150107828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7320;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150108021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150108095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1785;AVGPOST=0.9991;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 150108142 rs113754929 AGGGTCTT A 4289 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9749;ERATE=0.0005;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150108231 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150108250 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8797;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150108338 . AG A 309 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5887;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150108411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150108426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6861;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150108464 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6127;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150108604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150108822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9557;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150108843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150108854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150108975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8950;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150109059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0394;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 150109222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7545;ERATE=0.0004;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150109268 . G GA 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5436;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150109341 . G GT 224 PASS INDEL;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0064;AVGPOST=0.9947;RSQ=0.6749;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150109358 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150109410 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8774;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150109429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0582;AVGPOST=0.9988;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 150109547 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150109548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6439;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0004;THETA=0.0001;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 150109600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9695;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150109797 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7668;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150109871 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150110011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6542;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150110034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7056;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150110059 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150110078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.1374;AVGPOST=0.9938;RSQ=0.9826;ERATE=0.0005;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 150110111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0148;AVGPOST=0.9985;RSQ=0.9593;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150110270 rs34315235 AC A 58130 PASS INDEL;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5590;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0005;THETA=0.0002;AC=1223;AN=2184 GT:DS:GL:BD 0.55998170 1 1 150110301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.6521;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 150110309 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150110417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150110541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0863;AVGPOST=0.9966;RSQ=0.9826;ERATE=0.0006;THETA=0.0003;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 150110542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0839;AVGPOST=0.9959;RSQ=0.9798;ERATE=0.0004;THETA=0.0002;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 150110603 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.958;LDAF=0.0608;AVGPOST=0.9966;RSQ=0.9785;ERATE=0.0003;THETA=0.0003;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150110740 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0433;AVGPOST=0.9991;RSQ=0.9918;ERATE=0.0004;THETA=0.0011;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150110748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150111003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0046;AVGPOST=0.9983;RSQ=0.8811;ERATE=0.0003;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150111221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150111310 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6517;AVGPOST=0.9944;RSQ=0.9911;ERATE=0.0009;THETA=0.0003;AC=1425;AN=2184 GT:DS:GL:BD 0.65247256 1 1 150111484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8773;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150111576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7187;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0006;THETA=0.0003;AC=1571;AN=2184 GT:DS:GL:BD 0.71932232 1 1 150111659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.4904;AVGPOST=0.9936;RSQ=0.9906;ERATE=0.0012;THETA=0.0006;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 150111723 . CATAG C 2669 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9786;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150111755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150111798 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150111892 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150111938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7946;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150112181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0438;AVGPOST=0.9993;RSQ=0.9937;ERATE=0.0003;THETA=0.0005;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 150112191 . CCAAT C 490 PASS INDEL;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0035;AVGPOST=0.9948;RSQ=0.4607;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150112207 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150112214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7275;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=1589;AN=2184 GT:DS:GL:BD 0.72756410 1 1 150112236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150112244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0151;AVGPOST=0.9996;RSQ=0.9884;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150112245 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8481;ERATE=0.0003;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150112487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6389;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150112511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150112546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150112559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0081;AVGPOST=0.9985;RSQ=0.9226;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150112609 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6081;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150112655 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1579;AVGPOST=0.9970;RSQ=0.9914;ERATE=0.0006;THETA=0.0042;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 150112853 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150112920 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7828;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150112931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.2495;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150112942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0004;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150113056 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150113114 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0648;AVGPOST=0.9985;RSQ=0.9910;ERATE=0.0004;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 150113305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7214;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150113340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.3311;AVGPOST=0.9820;RSQ=0.9711;ERATE=0.0007;THETA=0.0072;AC=724;AN=2184 GT:DS:GL:BD 0.33150184 0 1 150113434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0085;AVGPOST=0.9982;RSQ=0.9290;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150113438 . C CA 128 PASS INDEL;BAVGPOST=0.987;BRSQ=0.565;LDAF=0.0278;AVGPOST=0.9671;RSQ=0.5206;ERATE=0.0107;THETA=0.0044;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150113508 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8623;ERATE=0.0005;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150113527 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.9821;AVGPOST=0.9985;RSQ=0.9667;ERATE=0.0003;THETA=0.0151;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 150113646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7694;ERATE=0.0003;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150113662 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7834;ERATE=0.0013;THETA=0.0036;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150113711 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6141;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150113781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150113928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150113965 . C CT 458 PASS INDEL;BAVGPOST=0.987;BRSQ=0.725;LDAF=0.0207;AVGPOST=0.9856;RSQ=0.7368;ERATE=0.0004;THETA=0.0024;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150113966 . AGCTCC A 6278 PASS INDEL;BAVGPOST=0.981;BRSQ=0.760;LDAF=0.0424;AVGPOST=0.9841;RSQ=0.8714;ERATE=0.0004;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150113974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150114053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150114092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150114265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5919;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0002;THETA=0.0007;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 150114499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9463;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150114510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.7289;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150114596 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7038;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150114640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5595;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150114878 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0136;AVGPOST=0.9981;RSQ=0.9550;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150114984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.888;LDAF=0.0115;AVGPOST=0.9954;RSQ=0.8507;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150115203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8837;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150115213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0243;AVGPOST=0.9991;RSQ=0.9838;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150115224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6619;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150115367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9682;ERATE=0.0002;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150115368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9459;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150115395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7760;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150115396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5170;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150115519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5924;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150115734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4366;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150115983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.641;LDAF=0.0051;AVGPOST=0.9957;RSQ=0.7007;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150116068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0166;AVGPOST=0.9982;RSQ=0.9574;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150116105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0002;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150116113 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8431;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150116306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7688;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150116320 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150116363 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5954;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7455;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6853;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4294;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7055;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116752 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0065;AVGPOST=0.9983;RSQ=0.9028;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150116785 . C CT 209 PASS INDEL;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150116904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8401;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150116932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7641;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150117242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7106;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150117352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8884;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150117442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0517;AVGPOST=0.9985;RSQ=0.9913;ERATE=0.0003;THETA=0.0006;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 150117443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.6068;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150117445 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9145;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150117713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0054;AVGPOST=0.9994;RSQ=0.9613;ERATE=0.0002;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150117766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9183;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150117819 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9257;ERATE=0.0002;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150118009 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6334;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150118277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.533;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6666;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150118317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0063;AVGPOST=0.9966;RSQ=0.7927;ERATE=0.0004;THETA=0.0016;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150118342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6020;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150118420 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.8323;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150118476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150118557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150118965 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6713;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150119041 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5703;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150119072 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.862;LDAF=0.0176;AVGPOST=0.9946;RSQ=0.8840;ERATE=0.0004;THETA=0.0007;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150119127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9500;ERATE=0.0004;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150119142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4885;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150119214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0374;AVGPOST=0.9951;RSQ=0.9418;ERATE=0.0004;THETA=0.0010;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150119248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8006;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150119322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6101;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150119357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150119375 MERGED_DEL_2_3476 ATGGCATAAGGTAAAAGTTGAAGTTATCTATCTTTACTGATATCCAGTTGCCTCATCGCCATTTGTTAAATAAAGAACAAACTGTCTCCACCGCATTACTTTGTTATCTTTGCACAAAACCAATTAACAGCACATACATATGGATCTATTCCTGAACACTCTATTTTACCTATTGATTTATGTCTGTCTT A . . SV;BAVGPOST=0.993;BRSQ=0.741;LDAF=0.0148;AVGPOST=0.9889;RSQ=0.6890;ERATE=0.0023;THETA=0.0005;CIEND=-130;33;CIPOS=-149;19;END=51103586;HOMLEN=1;HOMSEQ=T;SOURCE=BreakDancer_51102416_51103459;G GT:DS:GL:BD 0.01053114 0 1 150119481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150119572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9991;RSQ=0.9787;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150119634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0098;AVGPOST=0.9997;RSQ=0.9844;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150119654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9160;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150119701 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1679;AVGPOST=0.9920;RSQ=0.9776;ERATE=0.0007;THETA=0.0006;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 150119759 rs34464926 T TA 1113 PASS INDEL;BAVGPOST=0.635;BRSQ=0.276;LDAF=0.3451;AVGPOST=0.6968;RSQ=0.4176;ERATE=0.0351;THETA=0.0016;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 150119886 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0697;AVGPOST=0.9972;RSQ=0.9837;ERATE=0.0003;THETA=0.0007;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 150120121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9081;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150120133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.987;LDAF=0.4328;AVGPOST=0.9899;RSQ=0.9854;ERATE=0.0004;THETA=0.0006;AC=944;AN=2184 GT:DS:GL:BD 0.43223444 0 1 150120209 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0715;AVGPOST=0.9989;RSQ=0.9931;ERATE=0.0003;THETA=0.0008;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 150120227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.803;LDAF=0.0195;AVGPOST=0.9904;RSQ=0.8163;ERATE=0.0006;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150120319 . CAT C 44 PASS INDEL;BAVGPOST=0.996;BRSQ=0.554;LDAF=0.0072;AVGPOST=0.9900;RSQ=0.4524;ERATE=0.0019;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150120357 . C CAA 26 PASS INDEL;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.6651;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150120468 . T TTG 629 PASS INDEL;BAVGPOST=0.979;BRSQ=0.839;LDAF=0.0678;AVGPOST=0.9872;RSQ=0.9266;ERATE=0.0008;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 150120523 . T TAG 762 PASS INDEL;BAVGPOST=0.979;BRSQ=0.840;LDAF=0.0675;AVGPOST=0.9916;RSQ=0.9495;ERATE=0.0006;THETA=0.0007;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 150120528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5047;ERATE=0.0006;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150120561 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150120627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7606;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150120684 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7990;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150120786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5574;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150120958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7354;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150121028 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0107;AVGPOST=0.9982;RSQ=0.9360;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150121089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.418;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4677;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150121118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4298;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.668;LDAF=0.0063;AVGPOST=0.9934;RSQ=0.5784;ERATE=0.0010;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150121202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9223;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150121222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7683;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150121230 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9810;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150121346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0045;AVGPOST=0.9969;RSQ=0.7201;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150121348 . CAT C 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5911;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121372 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150121430 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121535 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9815;ERATE=0.0003;THETA=0.0014;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150121620 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7204;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150121661 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5202;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0232;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0011;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150121739 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150121847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150121854 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8870;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150121883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8501;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150122009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8442;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150122044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9750;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150122075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9221;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150122097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150122181 . C CT 146 PASS INDEL;BAVGPOST=0.990;BRSQ=0.510;LDAF=0.0181;AVGPOST=0.9760;RSQ=0.4756;ERATE=0.0060;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150122206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.4881;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150122496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0253;AVGPOST=0.9997;RSQ=0.9948;ERATE=0.0003;THETA=0.0010;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150122765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6325;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150122864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7937;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150123268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150123391 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8111;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150123392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.7913;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150123660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.4040;AVGPOST=0.9938;RSQ=0.9903;ERATE=0.0010;THETA=0.0006;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 150123916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7772;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150124009 . T TG 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150124085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150124169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9547;ERATE=0.0002;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150124198 . TTC T 253 PASS INDEL;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6184;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150124214 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150124350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150124430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7277;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150124495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150124499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0151;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0002;THETA=0.0015;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150124507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6411;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150124812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5617;ERATE=0.0002;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150124823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0155;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0002;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150124888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0121;AVGPOST=0.9983;RSQ=0.9553;ERATE=0.0004;THETA=0.0018;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150125039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9044;ERATE=0.0002;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150125061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150125120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0052;AVGPOST=0.9967;RSQ=0.7420;ERATE=0.0004;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150125177 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.671;LDAF=0.0062;AVGPOST=0.9978;RSQ=0.8474;ERATE=0.0002;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150125197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150125238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9452;ERATE=0.0002;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150125242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9599;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150125330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5917;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150125469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0002;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150125486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.838;LDAF=0.0105;AVGPOST=0.9972;RSQ=0.9018;ERATE=0.0003;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150125587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6310;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150125596 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150125617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0348;AVGPOST=0.9956;RSQ=0.9468;ERATE=0.0003;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 150125642 . TC T 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6402;ERATE=0.0005;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150125832 . C CT 42 PASS INDEL;BAVGPOST=0.991;BRSQ=0.528;LDAF=0.0259;AVGPOST=0.9629;RSQ=0.4349;ERATE=0.0073;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150125833 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.900;LDAF=0.0255;AVGPOST=0.9938;RSQ=0.8970;ERATE=0.0008;THETA=0.0013;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150125876 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0129;AVGPOST=0.9985;RSQ=0.9490;ERATE=0.0002;THETA=0.0015;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150125877 rs113520734 GT G 12332 PASS INDEL;BAVGPOST=0.972;BRSQ=0.943;LDAF=0.2684;AVGPOST=0.9364;RSQ=0.8870;ERATE=0.0129;THETA=0.0011;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 150125885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9782;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150125998 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9542;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150126817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.926;LDAF=0.0511;AVGPOST=0.9949;RSQ=0.9588;ERATE=0.0004;THETA=0.0007;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 150126819 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3474;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150126958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9843;ERATE=0.0003;THETA=0.0015;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150127194 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3636;ERATE=0.0007;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150127269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0031;AVGPOST=0.9963;RSQ=0.4943;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150127354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.900;LDAF=0.2236;AVGPOST=0.9531;RSQ=0.9108;ERATE=0.0091;THETA=0.0010;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 150127672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.791;LDAF=0.0140;AVGPOST=0.9955;RSQ=0.8784;ERATE=0.0003;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150127675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5471;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150127676 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0164;AVGPOST=0.9981;RSQ=0.9538;ERATE=0.0004;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150127744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9776;ERATE=0.0003;THETA=0.0013;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150127785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0002;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150127836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150127848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4629;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150127982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.609;LDAF=0.0339;AVGPOST=0.9614;RSQ=0.5470;ERATE=0.0080;THETA=0.0010;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150128520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0104;AVGPOST=0.9986;RSQ=0.9501;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150128562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0058;AVGPOST=0.9969;RSQ=0.7632;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150128668 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0055;AVGPOST=0.9963;RSQ=0.7368;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150128669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150128782 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9012;ERATE=0.0002;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150128832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4922;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150128955 . TG T 162 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7090;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150129057 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9150;ERATE=0.0003;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150129059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.3323;AVGPOST=0.9934;RSQ=0.9883;ERATE=0.0009;THETA=0.0003;AC=727;AN=2184 GT:DS:GL:BD 0.33287546 0 1 150129261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.828;LDAF=0.0178;AVGPOST=0.9953;RSQ=0.9022;ERATE=0.0002;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150129339 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0088;AVGPOST=0.9994;RSQ=0.9683;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150129365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150129382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9994;RSQ=0.9878;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150129521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8329;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150129669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.8928;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150129710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9548;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150129773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.4008;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150129791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7092;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=1550;AN=2184 GT:DS:GL:BD 0.70970696 1 1 150129812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9636;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150129847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150130026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7848;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150130045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1263;AVGPOST=0.9969;RSQ=0.9899;ERATE=0.0005;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 150130104 . AT A 106 PASS INDEL;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7538;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150130305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9189;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150130436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7096;AVGPOST=0.9981;RSQ=0.9973;ERATE=0.0003;THETA=0.0032;AC=1551;AN=2184 GT:DS:GL:BD 0.71016484 1 1 150130471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7100;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=1552;AN=2184 GT:DS:GL:BD 0.71062273 1 1 150130484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150130515 . CTG C 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150130615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9797;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150130764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7478;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150131110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9331;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150131199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150131233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7670;ERATE=0.0003;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150131292 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1691;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0005;THETA=0.0004;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 150131304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150131326 . C CCAA 35502 PASS INDEL;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3185;AVGPOST=0.9880;RSQ=0.9814;ERATE=0.0003;THETA=0.0005;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 150131489 rs74628938 C CAAA 67735 PASS INDEL;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3187;AVGPOST=0.9880;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 150131490 . A AAAG 20475 PASS INDEL;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3187;AVGPOST=0.9888;RSQ=0.9827;ERATE=0.0002;THETA=0.0005;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 150131491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150131769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6846;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150131800 . A AT 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0033;AVGPOST=0.9947;RSQ=0.4682;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150131945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.904;LDAF=0.4953;AVGPOST=0.9260;RSQ=0.8892;ERATE=0.0148;THETA=0.0008;AC=1105;AN=2184 GT:DS:GL:BD 0.50595236 1 1 150132066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0054;AVGPOST=0.9969;RSQ=0.7927;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150132098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6830;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150132099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0214;AVGPOST=0.9991;RSQ=0.9819;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150132225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0834;AVGPOST=0.9992;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 150132230 . G GT 38 PASS INDEL;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.6901;ERATE=0.0005;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150132349 . G GT 7 PASS INDEL;BAVGPOST=0.963;BRSQ=0.139;LDAF=0.0511;AVGPOST=0.9295;RSQ=0.5073;ERATE=0.0016;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150132354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5383;AVGPOST=0.9951;RSQ=0.9928;ERATE=0.0007;THETA=0.0005;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 150132447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6776;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150132470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150132477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150132521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7468;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150132561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150132596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9991;RSQ=0.9604;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150132668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0059;AVGPOST=0.9970;RSQ=0.7805;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150132735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8043;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150132776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6576;ERATE=0.0003;THETA=0.0033;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150132811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3034;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 150132970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150133055 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5233;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150133059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7258;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150133120 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0725;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0002;THETA=0.0008;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 150133132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150133210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150133285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6340;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150133304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5005;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150133524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0079;AVGPOST=0.9974;RSQ=0.8591;ERATE=0.0005;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150133718 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9403;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150133934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6340;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150133936 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0002;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150133952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7570;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150134121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8507;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150134149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8846;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150134257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8963;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150134259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9505;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150134447 . AAT A 154 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7230;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150134524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150134564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0092;AVGPOST=0.9997;RSQ=0.9832;ERATE=0.0003;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150134570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150134675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0019;AVGPOST=0.9969;RSQ=0.2908;ERATE=0.0006;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150134819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0039;AVGPOST=0.9967;RSQ=0.7042;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150134831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9977;RSQ=0.8089;ERATE=0.0006;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150134866 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.7813;ERATE=0.0005;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150134953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7484;ERATE=0.0005;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150134967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.468;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.4917;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150134968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.5995;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150134994 . ACTGGTAAACTG A 1493 PASS INDEL;BAVGPOST=0.995;BRSQ=0.558;LDAF=0.0080;AVGPOST=0.9912;RSQ=0.5421;ERATE=0.0007;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150135175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.504;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7420;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150135310 . GATATTTAA G 3973 PASS INDEL;BAVGPOST=0.994;BRSQ=0.861;LDAF=0.0221;AVGPOST=0.9915;RSQ=0.8404;ERATE=0.0009;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150135333 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8382;ERATE=0.0004;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150135451 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9997;RSQ=0.0998;ERATE=0.0003;THETA=0.0014;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150135523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150135643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150135720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7474;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150135906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8026;ERATE=0.0005;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150135990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0531;AVGPOST=0.9968;RSQ=0.9778;ERATE=0.0003;THETA=0.0013;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 150136011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7783;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150136106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0912;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0011;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 150136206 . ACTTT A 3089 PASS INDEL;BAVGPOST=0.989;BRSQ=0.935;LDAF=0.0985;AVGPOST=0.9923;RSQ=0.9647;ERATE=0.0005;THETA=0.0018;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 150136295 rs67002243 CTTTCT C 12069 PASS INDEL;BAVGPOST=0.989;BRSQ=0.935;LDAF=0.0991;AVGPOST=0.9961;RSQ=0.9817;ERATE=0.0004;THETA=0.0007;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 150136296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.5521;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150136495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0671;AVGPOST=0.9990;RSQ=0.9941;ERATE=0.0004;THETA=0.0006;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 150136690 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6102;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150136731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0998;AVGPOST=0.9985;RSQ=0.9938;ERATE=0.0004;THETA=0.0007;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 150136817 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7160;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150136841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0101;AVGPOST=0.9992;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150136846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150136855 . AAG A 72 PASS INDEL;BAVGPOST=0.983;BRSQ=0.430;LDAF=0.0890;AVGPOST=0.8827;RSQ=0.4292;ERATE=0.0118;THETA=0.0007;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 150136938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4435;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150136956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0203;AVGPOST=0.9995;RSQ=0.9885;ERATE=0.0003;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150137020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2302;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 150137389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150137414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5079;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150137474 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150137481 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150137530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150137550 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1001;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0004;THETA=0.0008;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150137610 . T TCCA 213 PASS INDEL;BAVGPOST=0.982;BRSQ=0.130;LDAF=0.0738;AVGPOST=0.8844;RSQ=0.3294;ERATE=0.0077;THETA=0.0012;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 150137811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0032;AVGPOST=0.9946;RSQ=0.3929;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150138032 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.392;LDAF=0.0064;AVGPOST=0.9935;RSQ=0.5884;ERATE=0.0012;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150138056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7894;ERATE=0.0005;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150138076 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.962;LDAF=0.1001;AVGPOST=0.9988;RSQ=0.9939;ERATE=0.0004;THETA=0.0010;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150138091 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150138344 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150138735 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150138756 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150138829 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150138906 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150138981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1109;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 150139017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4888;AVGPOST=0.9922;RSQ=0.9888;ERATE=0.0009;THETA=0.0010;AC=1071;AN=2184 GT:DS:GL:BD 0.49038461 0 1 150139148 . A ATG 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0370;AVGPOST=0.9986;RSQ=0.9875;ERATE=0.0003;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150139238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0052;AVGPOST=0.9938;RSQ=0.5620;ERATE=0.0015;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150139369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6181;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150139519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0064;AVGPOST=0.9994;RSQ=0.9544;ERATE=0.0004;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150139577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0070;AVGPOST=0.9985;RSQ=0.9157;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150139692 . AAAAG A 64350 PASS INDEL;BAVGPOST=0.978;BRSQ=0.907;LDAF=0.8758;AVGPOST=0.9638;RSQ=0.8688;ERATE=0.0085;THETA=0.0008;AC=1939;AN=2184 GT:DS:GL:BD 0.88782054 1 1 150139715 rs58500051 GA G 6667 PASS INDEL;BAVGPOST=0.940;BRSQ=0.763;LDAF=0.8357;AVGPOST=0.8821;RSQ=0.6888;ERATE=0.0150;THETA=0.0023;AC=1903;AN=2184 GT:DS:GL:BD 0.87133700 1 1 150139719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9193;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150139814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9674;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150139883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150139937 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5894;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150139970 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9754;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150139976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9581;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150140039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8819;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150140047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3292;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150140085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9996;RSQ=0.0607;ERATE=0.0003;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 150140104 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0630;AVGPOST=0.9989;RSQ=0.9925;ERATE=0.0003;THETA=0.0021;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 150140159 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4875;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9287;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150140193 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150140203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0739;AVGPOST=0.9947;RSQ=0.9696;ERATE=0.0004;THETA=0.0006;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 150140222 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150140298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7948;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150140341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0374;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150140354 . TCAAA T 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150140371 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.355;LDAF=0.0270;AVGPOST=0.9625;RSQ=0.4490;ERATE=0.0085;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150140429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150140684 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7713;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7117;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150140726 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7265;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0039;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150140993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150141163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150141185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150141231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150141355 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150141378 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150141491 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150141494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0027;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0047;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150141501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150141508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150141600 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9572;ERATE=0.0003;THETA=0.0080;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150141668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.9130;AVGPOST=0.9976;RSQ=0.9884;ERATE=0.0003;THETA=0.0005;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 150141782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0069;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150141813 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9771;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150141857 . T TG 243 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6591;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150141895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9118;AVGPOST=0.9978;RSQ=0.9895;ERATE=0.0004;THETA=0.0007;AC=1991;AN=2184 GT:DS:GL:BD 0.91163003 1 1 150141936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9379;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150141943 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0227;AVGPOST=0.9994;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150142070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150142183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0110;AVGPOST=0.9993;RSQ=0.9763;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150142209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9591;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150142265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150142391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0138;AVGPOST=0.9969;RSQ=0.9120;ERATE=0.0003;THETA=0.0032;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150142420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150142426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150142845 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5027;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150142959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3772;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 150143013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9034;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150143090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0069;AVGPOST=0.9971;RSQ=0.8228;ERATE=0.0009;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150143203 . GC G 1015 PASS INDEL;BAVGPOST=0.973;BRSQ=0.914;LDAF=0.1956;AVGPOST=0.9737;RSQ=0.9363;ERATE=0.0004;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 150143240 rs55982037 CCT C 19108 PASS INDEL;BAVGPOST=0.986;BRSQ=0.961;LDAF=0.1834;AVGPOST=0.9818;RSQ=0.9536;ERATE=0.0007;THETA=0.0004;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 150143243 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150143264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0390;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0026;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 150143383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0387;AVGPOST=0.9992;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 150143580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0734;AVGPOST=0.9971;RSQ=0.9848;ERATE=0.0003;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 150143638 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.808;LDAF=0.0107;AVGPOST=0.9960;RSQ=0.8569;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150143654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4932;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150143686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9718;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150143707 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0084;AVGPOST=0.9988;RSQ=0.9412;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150143723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0723;AVGPOST=0.9987;RSQ=0.9919;ERATE=0.0005;THETA=0.0004;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 150143869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0593;AVGPOST=0.9991;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 150143878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0058;AVGPOST=0.9983;RSQ=0.8950;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150143999 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1809;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150144174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0925;AVGPOST=0.9986;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 150144229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9554;AVGPOST=0.9994;RSQ=0.9932;ERATE=0.0004;THETA=0.0008;AC=2087;AN=2184 GT:DS:GL:BD 0.95558608 1 1 150144246 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6697;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150144337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.766;LDAF=0.0151;AVGPOST=0.9974;RSQ=0.9251;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150144358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1832;AVGPOST=0.9941;RSQ=0.9859;ERATE=0.0006;THETA=0.0005;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 150144368 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9551;AVGPOST=0.9981;RSQ=0.9823;ERATE=0.0005;THETA=0.0003;AC=2087;AN=2184 GT:DS:GL:BD 0.95558608 1 1 150144376 . CTT C 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0002;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150144422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1806;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150144445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8515;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150144472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1806;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0007;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150144489 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150144609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0286;AVGPOST=0.9990;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150144625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1125;AVGPOST=0.9959;RSQ=0.9859;ERATE=0.0004;THETA=0.0004;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 150144683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150144845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.920;LDAF=0.7287;AVGPOST=0.9767;RSQ=0.9604;ERATE=0.0006;THETA=0.0002;AC=1582;AN=2184 GT:DS:GL:BD 0.72435898 1 1 150144849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6915;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150144920 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150144923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6698;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150144976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.608;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7353;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150144984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.852;LDAF=0.1646;AVGPOST=0.9769;RSQ=0.9367;ERATE=0.0009;THETA=0.0009;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 150144997 rs10630806 C CATTAT 3831 PASS INDEL;BAVGPOST=0.920;BRSQ=0.591;LDAF=0.1127;AVGPOST=0.9251;RSQ=0.7377;ERATE=0.0025;THETA=0.0002;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 150144998 . A AT 288 PASS INDEL;BAVGPOST=0.940;BRSQ=0.444;LDAF=0.0706;AVGPOST=0.9390;RSQ=0.6538;ERATE=0.0027;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150145014 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1815;AVGPOST=0.9979;RSQ=0.9944;ERATE=0.0006;THETA=0.0007;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 150145152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150145189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1809;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0005;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1805;AVGPOST=0.9987;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145227 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0152;AVGPOST=0.9979;RSQ=0.9446;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150145247 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150145385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6636;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150145429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8405;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150145516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150145551 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1805;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0002;THETA=0.0006;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150145773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150145800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1807;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0002;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1085;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0002;THETA=0.0002;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 150145895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1801;AVGPOST=0.9989;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145898 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6512;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150145943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8319;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150145960 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0459;AVGPOST=0.9978;RSQ=0.9809;ERATE=0.0004;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 150145973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1807;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150145982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150146034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6120;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150146042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0043;AVGPOST=0.9992;RSQ=0.9277;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150146058 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1881;AVGPOST=0.9975;RSQ=0.9936;ERATE=0.0002;THETA=0.0002;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 150146155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150146216 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0070;AVGPOST=0.9987;RSQ=0.9205;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150146219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1806;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150146236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0930;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0003;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 150146260 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.832;LDAF=0.0131;AVGPOST=0.9962;RSQ=0.8897;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150146277 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1809;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150146284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8678;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150146452 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1806;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150146468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1083;AVGPOST=0.9994;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 150146469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1791;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0005;THETA=0.0002;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 150146516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8510;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150146574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6131;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150146596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7138;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150146653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1085;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0009;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 150146676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1814;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150146687 rs113334812 AT A 9182 PASS INDEL;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1814;AVGPOST=0.9954;RSQ=0.9882;ERATE=0.0006;THETA=0.0009;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 150146909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5595;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150146939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.976;LDAF=0.1797;AVGPOST=0.9956;RSQ=0.9884;ERATE=0.0005;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150146947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.955;LDAF=0.5911;AVGPOST=0.9613;RSQ=0.9418;ERATE=0.0059;THETA=0.0004;AC=1300;AN=2184 GT:DS:GL:BD 0.59523809 1 1 150146962 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.932;LDAF=0.2286;AVGPOST=0.9918;RSQ=0.9828;ERATE=0.0009;THETA=0.0003;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 150146973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.888;LDAF=0.0734;AVGPOST=0.9951;RSQ=0.9693;ERATE=0.0005;THETA=0.0025;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 150146986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.831;LDAF=0.0207;AVGPOST=0.9931;RSQ=0.8642;ERATE=0.0005;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150147099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0065;AVGPOST=0.9941;RSQ=0.7081;ERATE=0.0002;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150147757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150147885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150147906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7114;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 150147907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1828;AVGPOST=0.9975;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 150147925 rs36036634 C CAA 20465 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1811;AVGPOST=0.9978;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150148012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150148018 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1804;AVGPOST=0.9987;RSQ=0.9962;ERATE=0.0005;THETA=0.0005;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 150148046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9750;ERATE=0.0002;THETA=0.0029;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150148069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150148200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1822;AVGPOST=0.9970;RSQ=0.9926;ERATE=0.0004;THETA=0.0004;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 150148203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.927;LDAF=0.1711;AVGPOST=0.9813;RSQ=0.9515;ERATE=0.0042;THETA=0.0006;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 150148224 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4366;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150148274 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0100;AVGPOST=0.9988;RSQ=0.9534;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150148327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150148403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8847;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150148567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1810;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0005;THETA=0.0006;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 150148576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0076;AVGPOST=0.9992;RSQ=0.9646;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150148594 . CAA C 19 PASS INDEL;BAVGPOST=0.950;BRSQ=0.069;LDAF=0.0915;AVGPOST=0.8731;RSQ=0.4083;ERATE=0.0068;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 150148741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150148812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7590;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150148886 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7096;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150149019 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9558;AVGPOST=0.9989;RSQ=0.9897;ERATE=0.0004;THETA=0.0002;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 150149035 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8934;AVGPOST=0.9988;RSQ=0.9945;ERATE=0.0004;THETA=0.0007;AC=1950;AN=2184 GT:DS:GL:BD 0.89285713 1 1 150149102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0002;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150149146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1808;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 150149172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150149297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9262;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150149319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150149424 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9676;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150149448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7049;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150149472 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1957;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 150149497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7681;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150149731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150149863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9990;RSQ=0.9025;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150149947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150150003 . CT C 1258 PASS INDEL;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0073;AVGPOST=0.9985;RSQ=0.9235;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150150043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150150061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0139;AVGPOST=0.9966;RSQ=0.9004;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150150174 . A AAT 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.8019;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150150221 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0131;AVGPOST=0.9979;RSQ=0.9335;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150150413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150150523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0042;AVGPOST=0.9991;RSQ=0.9025;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150150651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1057;AVGPOST=0.9976;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 150150667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150150691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150150890 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150151091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.885;LDAF=0.0098;AVGPOST=0.9972;RSQ=0.8936;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150151121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150151129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0188;AVGPOST=0.9997;RSQ=0.9929;ERATE=0.0003;THETA=0.0033;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150151268 . G GAAT 15441 PASS INDEL;BAVGPOST=0.982;BRSQ=0.959;LDAF=0.2362;AVGPOST=0.9762;RSQ=0.9535;ERATE=0.0043;THETA=0.0003;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 150151269 rs112565723 T TAAC 44552 PASS INDEL;BAVGPOST=0.987;BRSQ=0.971;LDAF=0.2387;AVGPOST=0.9894;RSQ=0.9799;ERATE=0.0015;THETA=0.0004;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 150151272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7836;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150151524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7736;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150151600 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150151844 . TC T 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7378;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150151906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7377;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150152307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0210;AVGPOST=0.9984;RSQ=0.9743;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150152327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150152367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0221;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0004;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150152458 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150152561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150152570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150152669 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150152775 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150152881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150152900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150153198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8095;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150153301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150153304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7679;ERATE=0.0011;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150153367 rs5774324 T TTC 82 PASS INDEL;BAVGPOST=0.997;BRSQ=0.698;LDAF=0.0051;AVGPOST=0.9932;RSQ=0.5076;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150153407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0500;AVGPOST=0.9932;RSQ=0.9500;ERATE=0.0005;THETA=0.0009;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 150153444 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8320;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150153555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150153648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150153676 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150153799 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150153809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.4610;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150153827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6610;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150153857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150153942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1215;AVGPOST=0.9983;RSQ=0.9933;ERATE=0.0003;THETA=0.0007;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 150153979 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150153983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0060;AVGPOST=0.9986;RSQ=0.8935;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150153991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150153993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5491;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8191;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150154111 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.2181;AVGPOST=0.9941;RSQ=0.9875;ERATE=0.0003;THETA=0.0001;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 150154152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.972;LDAF=0.1757;AVGPOST=0.9932;RSQ=0.9830;ERATE=0.0003;THETA=0.0005;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 150154153 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2103;AVGPOST=0.9985;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 150154188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2253;AVGPOST=0.9980;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 150154222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2257;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0008;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 150154227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154338 . CTGTT C 207 PASS INDEL;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7118;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0005;THETA=0.0003;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 150154552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1261;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0006;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 150154564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0001;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150154632 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6023;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154641 . CA C 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4958;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 150154660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3487;AVGPOST=0.9956;RSQ=0.9920;ERATE=0.0013;THETA=0.0005;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 150154770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150154891 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6877;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150154981 rs11462890 G GT 23602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2266;AVGPOST=0.9944;RSQ=0.9873;ERATE=0.0016;THETA=0.0002;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 150155244 . AT A 2097 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9994;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150155261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7227;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0359;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150155475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.6190;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150155508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2263;AVGPOST=0.9988;RSQ=0.9970;ERATE=0.0004;THETA=0.0007;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 150155634 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4880;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2263;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 150155815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155829 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150155858 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1831;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 150155966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.9943;AVGPOST=0.9985;RSQ=0.9037;ERATE=0.0004;THETA=0.0003;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 150156116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0220;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150156163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150156206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1012;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 150156234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9001;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150156310 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150156342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9596;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150156475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0399;AVGPOST=0.9974;RSQ=0.9793;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150156492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0576;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0004;THETA=0.0005;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 150156613 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1859;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0006;THETA=0.0004;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 150156626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8080;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150156727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2271;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 150156782 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0127;AVGPOST=0.9995;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150156798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9074;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150156805 . G GA 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6293;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150156835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0405;AVGPOST=0.9992;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 150156847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0087;AVGPOST=0.9969;RSQ=0.8738;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150156941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150156971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9723;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150157069 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6894;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150157094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9994;RSQ=0.9798;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150157098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2272;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 150157155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6732;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150157284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150157467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7306;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150157655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150157660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9991;RSQ=0.9543;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150157830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6579;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150158002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6413;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150158020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6036;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150158094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1845;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 150158106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.943;LDAF=0.1819;AVGPOST=0.9950;RSQ=0.9872;ERATE=0.0007;THETA=0.0005;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 150158162 rs80124035 TG T 1252 PASS INDEL;BAVGPOST=0.903;BRSQ=0.594;LDAF=0.1300;AVGPOST=0.9153;RSQ=0.7512;ERATE=0.0053;THETA=0.0005;AC=267;AN=2184 GT:DS:GL:BD 0.12225275 0 1 150158194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.725;LDAF=0.1442;AVGPOST=0.9386;RSQ=0.8303;ERATE=0.0022;THETA=0.0008;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 150158226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.973;LDAF=0.2122;AVGPOST=0.9896;RSQ=0.9755;ERATE=0.0013;THETA=0.0004;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 150158259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.4947;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0007;THETA=0.0004;AC=1079;AN=2184 GT:DS:GL:BD 0.49404761 0 1 150158425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1873;AVGPOST=0.9982;RSQ=0.9948;ERATE=0.0004;THETA=0.0024;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 150158432 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.569;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5804;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150158452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150158498 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150158587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1883;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 150158639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5695;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150158640 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150158757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6342;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150158823 . A AT 306 PASS INDEL;BAVGPOST=0.966;BRSQ=0.542;LDAF=0.0521;AVGPOST=0.9460;RSQ=0.6359;ERATE=0.0010;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 150158917 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4946;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150158923 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1278;AVGPOST=0.9980;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 150158924 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2095;AVGPOST=0.9980;RSQ=0.9948;ERATE=0.0004;THETA=0.0003;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 150158934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0586;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 150159012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7330;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150159054 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1884;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0004;THETA=0.0006;AC=412;AN=2184 GT:DS:GL:BD 0.18864469 0 1 150159060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150159124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0130;AVGPOST=0.9982;RSQ=0.9391;ERATE=0.0006;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150159320 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0154;AVGPOST=0.9991;RSQ=0.9730;ERATE=0.0004;THETA=0.0001;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150159345 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4333;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150159436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150159467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0129;AVGPOST=0.9984;RSQ=0.9438;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150159560 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0042;AVGPOST=0.9977;RSQ=0.7906;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150159575 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0086;AVGPOST=0.9978;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150159832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5943;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150159978 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0138;AVGPOST=0.9984;RSQ=0.9537;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150159979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8402;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150160024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150160230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7529;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150160236 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.940;LDAF=0.0225;AVGPOST=0.9975;RSQ=0.9546;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150160280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9590;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150160345 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150160420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8426;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150160439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8076;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150160464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2909;AVGPOST=0.9973;RSQ=0.9947;ERATE=0.0007;THETA=0.0003;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 150160510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5489;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150160584 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2892;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0006;THETA=0.0007;AC=633;AN=2184 GT:DS:GL:BD 0.28983516 0 1 150160648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5329;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150160668 . GC G 2369 PASS INDEL;BAVGPOST=0.993;BRSQ=0.886;LDAF=0.0262;AVGPOST=0.9979;RSQ=0.9693;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150161116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0131;AVGPOST=0.9992;RSQ=0.9735;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150161150 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9439;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150161237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150161268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150161573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150161575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1766;AVGPOST=0.9978;RSQ=0.9939;ERATE=0.0004;THETA=0.0001;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 150161639 . GCA G 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6880;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150161678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7899;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150161766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8533;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150161868 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150161869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150161881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9614;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0004;THETA=0.0003;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 150161905 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150161938 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5351;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150161962 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9342;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150161968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150161978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0193;AVGPOST=0.9988;RSQ=0.9769;ERATE=0.0004;THETA=0.0001;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150162078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9466;AVGPOST=0.9992;RSQ=0.9930;ERATE=0.0003;THETA=0.0018;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 150162111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4938;AVGPOST=0.9954;RSQ=0.9929;ERATE=0.0012;THETA=0.0005;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 150162292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150162305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7505;ERATE=0.0021;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150162325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4941;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 150162495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150162653 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150162763 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150162782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150162836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6725;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0001;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 150162853 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150162872 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8890;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150162909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2878;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 150162910 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150163204 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7424;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150163289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150163319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163473 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6471;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150163592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150163633 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0004;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150163647 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8064;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150163726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150163974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150164112 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150164135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6811;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150164145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150164174 . G GA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150164209 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7022;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150164360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9732;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150164459 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5282;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150164497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150164616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6768;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150164761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150164794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6040;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150164860 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9085;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150164916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4458;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 150164944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4856;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150165033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6437;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150165219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9596;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150165241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9123;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150165301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8526;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150165308 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6669;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150165315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150165559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150165596 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5034;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150165668 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9384;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150165699 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7743;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150165719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5588;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150165767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.942;LDAF=0.4302;AVGPOST=0.9754;RSQ=0.9640;ERATE=0.0026;THETA=0.0002;AC=945;AN=2184 GT:DS:GL:BD 0.43269232 0 1 150165809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6733;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150165858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1132;AVGPOST=0.9958;RSQ=0.9843;ERATE=0.0006;THETA=0.0007;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 150165896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6163;AVGPOST=0.9963;RSQ=0.9940;ERATE=0.0005;THETA=0.0002;AC=1346;AN=2184 GT:DS:GL:BD 0.61630034 1 1 150166013 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4997;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150166106 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8983;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150166111 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4331;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6197;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5221;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150166245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6358;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 150166250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9623;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150166278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9168;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150166295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5810;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166296 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9244;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150166445 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1315;AVGPOST=0.9981;RSQ=0.9934;ERATE=0.0004;THETA=0.0003;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 150166564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150166669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4944;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0113;AVGPOST=0.9995;RSQ=0.9788;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150166885 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6399;AVGPOST=0.9965;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 150166895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4800;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150166974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8346;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150166975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1421;AVGPOST=0.9981;RSQ=0.9940;ERATE=0.0005;THETA=0.0009;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 150167073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1683;AVGPOST=0.9980;RSQ=0.9944;ERATE=0.0005;THETA=0.0002;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 150167157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8161;ERATE=0.0007;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150167178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150167179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0104;AVGPOST=0.9982;RSQ=0.9344;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150167293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6422;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150167419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8516;ERATE=0.0006;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150167493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1669;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 150167592 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8083;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150167604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1667;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 150167623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1272;AVGPOST=0.9973;RSQ=0.9918;ERATE=0.0003;THETA=0.0005;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 150167634 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7845;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150167645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9185;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150167685 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9741;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150167717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6635;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150167746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6945;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150167803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1684;AVGPOST=0.9985;RSQ=0.9956;ERATE=0.0005;THETA=0.0005;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 150167805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150167839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0051;AVGPOST=0.9979;RSQ=0.8367;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150167901 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8495;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150167973 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6828;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150167980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8696;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150168056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5638;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150168080 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7677;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150168119 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0056;AVGPOST=0.9979;RSQ=0.8512;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150168164 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8270;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150168206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5926;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150168225 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4859;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150168234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0328;AVGPOST=0.9980;RSQ=0.9716;ERATE=0.0005;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150168337 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4452;AVGPOST=0.9935;RSQ=0.9897;ERATE=0.0008;THETA=0.0003;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 150168446 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150168604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9853;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150168653 . CAAAAA C 256 PASS INDEL;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7859;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150168660 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8714;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150168878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150168939 . AT A 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150168954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8772;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150169028 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8855;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150169054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5142;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.5143;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6390;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150169146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169302 . CA C 617 PASS INDEL;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0073;AVGPOST=0.9971;RSQ=0.8405;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150169516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.7908;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150169552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0184;AVGPOST=0.9984;RSQ=0.9651;ERATE=0.0003;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150169607 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4911;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169692 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150169755 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0036;AVGPOST=0.9960;RSQ=0.5860;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150169757 . AGG A 1002 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9143;ERATE=0.0004;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150169777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0349;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150169863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0352;AVGPOST=0.9990;RSQ=0.9873;ERATE=0.0004;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150169963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150169980 . T TC 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5563;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150169985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150170087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9761;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150170120 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7648;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150170160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150170235 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150170299 . A AC 51 PASS INDEL;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4948;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150170336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150170552 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9620;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150170579 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7979;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150170697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8749;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150170711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150170939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150171073 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8628;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150171123 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9634;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150171179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8360;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150171210 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9745;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150171270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150171360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7648;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150171513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8748;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150171515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7119;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150171610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150171652 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150171672 . CCTT C 94 PASS INDEL;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7117;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150171751 . GC G 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150171774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9215;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150171869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8358;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150171934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1169;AVGPOST=0.9981;RSQ=0.9932;ERATE=0.0003;THETA=0.0007;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 150172050 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1191;AVGPOST=0.9967;RSQ=0.9874;ERATE=0.0005;THETA=0.0003;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 150172093 . TTTG T 310 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7888;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150172289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2239;AVGPOST=0.9969;RSQ=0.9932;ERATE=0.0004;THETA=0.0006;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 150172316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6654;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150172342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7611;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150172343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5811;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150172505 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5369;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150172584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0876;AVGPOST=0.9986;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 150172618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5929;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150172974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7400;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150172990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0291;AVGPOST=0.9980;RSQ=0.9704;ERATE=0.0004;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150173043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0289;AVGPOST=0.9994;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150173251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5697;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150173591 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150173651 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5533;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150173688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.910;LDAF=0.0122;AVGPOST=0.9973;RSQ=0.9256;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150173778 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9735;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150174000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6424;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150174168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4908;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150174222 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150174240 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6879;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150174317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9009;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150174462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.4247;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150174506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0685;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 150174576 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8237;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150174603 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1883;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 150174685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0274;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 150174747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8193;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150174789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0105;AVGPOST=0.9977;RSQ=0.9180;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150174820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150174854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7951;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 150174906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9999;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150174917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0845;AVGPOST=0.9985;RSQ=0.9918;ERATE=0.0004;THETA=0.0028;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 150174925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5118;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150174972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2858;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 150174981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7650;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150175003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0031;AVGPOST=0.9957;RSQ=0.5281;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150175044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7951;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 150175063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1878;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 150175081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150175138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.7938;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150175289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150175338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150175458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150175470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8614;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150175487 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0611;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150175516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150175589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0609;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150175599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8263;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150175609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6006;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 150175669 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1947;AVGPOST=0.9994;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 150175684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150175693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4040;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0004;THETA=0.0002;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 150175709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6262;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150175742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1945;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 150175769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7771;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150175777 . TA T 258 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4866;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150175786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4035;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0005;THETA=0.0004;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 150175809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8005;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150175864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9629;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150175916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0468;AVGPOST=0.9991;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 150175962 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150175969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150176004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7011;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150176105 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1879;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0003;THETA=0.0010;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 150176171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0313;AVGPOST=0.9982;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150176175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9602;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150176183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150176190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9863;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150176348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150176406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0608;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0006;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150176437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150176460 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150176495 rs61264462 T TC 12597 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0614;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150176619 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150176677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8472;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150176814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1067;AVGPOST=0.9984;RSQ=0.9940;ERATE=0.0004;THETA=0.0010;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 150176860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5713;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150176871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6812;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150176906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0610;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 150176956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150176984 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5950;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150177112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5247;ERATE=0.0004;THETA=0.0026;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150177187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5653;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150177221 . C CT 62 PASS INDEL;BAVGPOST=0.989;BRSQ=0.568;LDAF=0.0208;AVGPOST=0.9721;RSQ=0.4325;ERATE=0.0077;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150177270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0051;AVGPOST=0.9958;RSQ=0.6756;ERATE=0.0004;THETA=0.0026;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150177365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5018;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150177424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.713;LDAF=0.0064;AVGPOST=0.9926;RSQ=0.5878;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150177521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0604;AVGPOST=0.9991;RSQ=0.9942;ERATE=0.0004;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 150177603 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7901;AVGPOST=0.9965;RSQ=0.9927;ERATE=0.0004;THETA=0.0037;AC=1723;AN=2184 GT:DS:GL:BD 0.78891939 1 1 150177647 rs35985239 C CA 16658 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1832;AVGPOST=0.9965;RSQ=0.9905;ERATE=0.0005;THETA=0.0043;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 150177829 . A AC 276 PASS INDEL;BAVGPOST=0.926;BRSQ=0.718;LDAF=0.1230;AVGPOST=0.9474;RSQ=0.8351;ERATE=0.0006;THETA=0.0011;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 150177834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9664;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150177928 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150177941 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150178024 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0280;AVGPOST=0.9996;RSQ=0.9945;ERATE=0.0003;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150178050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0069;AVGPOST=0.9984;RSQ=0.9081;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150178096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150178097 rs66789513 T TC 82461 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9994;AVGPOST=0.9988;RSQ=0.2645;ERATE=0.0004;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 150178115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150178169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0145;AVGPOST=0.9993;RSQ=0.9781;ERATE=0.0003;THETA=0.0070;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150178175 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9736;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150178340 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150178345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5535;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150178432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9994;RSQ=0.9677;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150178574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0628;AVGPOST=0.9986;RSQ=0.9927;ERATE=0.0003;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 150178679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4459;AVGPOST=0.9952;RSQ=0.9929;ERATE=0.0012;THETA=0.0004;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 150178681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0043;AVGPOST=0.9965;RSQ=0.6713;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150178726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0284;AVGPOST=0.9977;RSQ=0.9696;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 150178727 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6475;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150178728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4662;AVGPOST=0.9841;RSQ=0.9762;ERATE=0.0039;THETA=0.0004;AC=1027;AN=2184 GT:DS:GL:BD 0.47023809 0 1 150178735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0145;AVGPOST=0.9979;RSQ=0.9324;ERATE=0.0005;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150178756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0041;AVGPOST=0.9936;RSQ=0.3469;ERATE=0.0014;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150178778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.1301;AVGPOST=0.9875;RSQ=0.9602;ERATE=0.0007;THETA=0.0040;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 150178781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0630;AVGPOST=0.9972;RSQ=0.9838;ERATE=0.0003;THETA=0.0023;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 150178804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3315;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150178840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.973;LDAF=0.4388;AVGPOST=0.9773;RSQ=0.9656;ERATE=0.0044;THETA=0.0004;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 150178901 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.968;LDAF=0.4368;AVGPOST=0.9699;RSQ=0.9566;ERATE=0.0040;THETA=0.0003;AC=960;AN=2184 GT:DS:GL:BD 0.43956044 0 1 150178965 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5995;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150178980 . GCCTGCC G 260 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150178990 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4450;AVGPOST=0.9963;RSQ=0.9947;ERATE=0.0007;THETA=0.0002;AC=972;AN=2184 GT:DS:GL:BD 0.44505495 0 1 150178995 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4731;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0004;THETA=0.0006;AC=1035;AN=2184 GT:DS:GL:BD 0.47390109 0 1 150179019 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5931;ERATE=0.0009;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150179106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8999;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150179115 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8452;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0003;THETA=0.0008;AC=1845;AN=2184 GT:DS:GL:BD 0.84478021 1 1 150179124 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5104;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4748;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1038;AN=2184 GT:DS:GL:BD 0.47527471 0 1 150179174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179193 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6047;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150179225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5331;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 150179630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150179897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7772;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150179990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150180000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0279;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150180220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150180536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6119;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150180793 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150180799 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150180940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150180967 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150181052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8244;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150181089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6330;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150181216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0110;AVGPOST=0.9976;RSQ=0.9009;ERATE=0.0005;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150181324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7789;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150181325 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0043;AVGPOST=0.9953;RSQ=0.5774;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150181367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150181369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.525;LDAF=0.0044;AVGPOST=0.9943;RSQ=0.5542;ERATE=0.0008;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150181738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3992;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150181911 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.948;LDAF=0.0378;AVGPOST=0.9987;RSQ=0.9850;ERATE=0.0004;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150181931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9336;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150181969 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.752;LDAF=0.0128;AVGPOST=0.9970;RSQ=0.9085;ERATE=0.0005;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150182020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0044;AVGPOST=0.9949;RSQ=0.5075;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150182058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.8020;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150182292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8341;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150182334 . A AT 77 PASS INDEL;BAVGPOST=0.996;BRSQ=0.566;LDAF=0.0074;AVGPOST=0.9881;RSQ=0.4232;ERATE=0.0024;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150182348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150182412 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5318;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150182415 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7412;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150182440 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0285;AVGPOST=0.9988;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150182491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150182495 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9988;RSQ=0.9433;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150182527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0283;AVGPOST=0.9992;RSQ=0.9875;ERATE=0.0005;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150182549 . CAG C 163 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7855;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150182602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.872;LDAF=0.0103;AVGPOST=0.9975;RSQ=0.9161;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150182640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4808;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0006;THETA=0.0003;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 150182722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150182767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150182772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7387;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150182872 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5325;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0005;THETA=0.0002;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 150182950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8753;AVGPOST=0.9983;RSQ=0.9942;ERATE=0.0004;THETA=0.0002;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 150183083 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150183094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150183196 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9612;ERATE=0.0004;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150183245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5486;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150183289 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150183335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.485;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8606;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150183401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0236;AVGPOST=0.9991;RSQ=0.9849;ERATE=0.0003;THETA=0.0001;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150183413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7838;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150183436 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150183663 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150183713 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.7999;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150183741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150183887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.945;LDAF=0.2485;AVGPOST=0.9813;RSQ=0.9635;ERATE=0.0007;THETA=0.0007;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 150184088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150184136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7980;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150184201 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8928;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150184256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7903;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150184286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150184298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7300;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150184359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2192;AVGPOST=0.9985;RSQ=0.9961;ERATE=0.0003;THETA=0.0002;AC=480;AN=2184 GT:DS:GL:BD 0.21978022 0 1 150184428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5669;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150184486 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6144;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150184500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150184723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9997;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150185113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0057;AVGPOST=0.9991;RSQ=0.9299;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150185173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0250;AVGPOST=0.9982;RSQ=0.9702;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150185211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8519;AVGPOST=0.9983;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=1862;AN=2184 GT:DS:GL:BD 0.85256410 1 1 150185279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9989;RSQ=0.9753;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150185281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0172;AVGPOST=0.9992;RSQ=0.9804;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150185304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150185400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0488;AVGPOST=0.9990;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 150185536 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0369;AVGPOST=0.9976;RSQ=0.9747;ERATE=0.0004;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 150185577 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150185673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8436;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150185743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150185761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6992;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150185787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150185984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150186047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8869;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150186173 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150186183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9443;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150186237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0239;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150186376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150186437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8815;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=1926;AN=2184 GT:DS:GL:BD 0.88186812 1 1 150186443 . T TA 75 PASS INDEL;BAVGPOST=0.988;BRSQ=0.526;LDAF=0.0287;AVGPOST=0.9623;RSQ=0.4787;ERATE=0.0072;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150186589 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150186659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150186762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.6462;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150186882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150186885 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4588;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0006;THETA=0.0002;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 150187050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7324;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150187093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0173;AVGPOST=0.9992;RSQ=0.9802;ERATE=0.0004;THETA=0.0013;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150187117 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150187230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150187243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150187346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4586;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 150187407 . CAA C 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150187478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5959;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150187575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150187605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0661;AVGPOST=0.9989;RSQ=0.9916;ERATE=0.0004;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 150187650 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.3640;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150187658 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150187700 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7322;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150187927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=0.9990;RSQ=0.9772;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150187973 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150188045 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5341;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0116;AVGPOST=0.9983;RSQ=0.9420;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150188177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0169;AVGPOST=0.9998;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150188258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150188333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0137;AVGPOST=0.9959;RSQ=0.8770;ERATE=0.0005;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150188509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4769;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0238;AVGPOST=0.9984;RSQ=0.9774;ERATE=0.0004;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 150188766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4927;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188813 . G GA 45 PASS INDEL;BAVGPOST=0.996;BRSQ=0.675;LDAF=0.0092;AVGPOST=0.9891;RSQ=0.5335;ERATE=0.0037;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150188838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188914 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7408;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150188963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150188976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7776;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150188984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5066;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150188985 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8269;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150189160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0004;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150189220 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6666;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150189257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.619;LDAF=0.0151;AVGPOST=0.9809;RSQ=0.4756;ERATE=0.0042;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150189351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0065;AVGPOST=0.9958;RSQ=0.7566;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150189357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.6077;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150189371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150189429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8854;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150189636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0987;AVGPOST=0.9980;RSQ=0.9919;ERATE=0.0003;THETA=0.0006;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 150189658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9182;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150189667 . TTG T 160 PASS INDEL;BAVGPOST=0.990;BRSQ=0.701;LDAF=0.0236;AVGPOST=0.9782;RSQ=0.6311;ERATE=0.0088;THETA=0.0009;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150189737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5177;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150189750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150189756 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.941;LDAF=0.2271;AVGPOST=0.9693;RSQ=0.9492;ERATE=0.0009;THETA=0.0010;AC=501;AN=2184 GT:DS:GL:BD 0.22939560 0 1 150189807 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150189839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6469;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150189885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8111;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150189896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150190418 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0161;AVGPOST=0.9995;RSQ=0.9857;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150190434 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150190565 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7153;ERATE=0.0005;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150190623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5566;AVGPOST=0.9957;RSQ=0.9941;ERATE=0.0007;THETA=0.0027;AC=1217;AN=2184 GT:DS:GL:BD 0.55723441 1 1 150190684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2476;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0006;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 150190745 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4807;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150190877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1587;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 150190923 . C CT 86 PASS INDEL;BAVGPOST=0.983;BRSQ=0.429;LDAF=0.0225;AVGPOST=0.9688;RSQ=0.4408;ERATE=0.0047;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150190940 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0048;AVGPOST=0.9969;RSQ=0.7537;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150190951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.7899;ERATE=0.0008;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150190958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0066;AVGPOST=0.9981;RSQ=0.8815;ERATE=0.0005;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150191095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2491;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 150191097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150191166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6646;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150191173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2490;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0009;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 150191207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1583;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 150191236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1583;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 150191240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0082;AVGPOST=0.9990;RSQ=0.9534;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150191286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150191323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6401;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150191395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150191481 . AG A 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.5017;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150191718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0042;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150191776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9773;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150191828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150191970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192068 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5705;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192131 . ACT A 496 PASS INDEL;BAVGPOST=0.976;BRSQ=0.697;LDAF=0.0584;AVGPOST=0.9460;RSQ=0.5902;ERATE=0.0238;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 150192161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192414 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8660;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150192635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2495;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 150192764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4822;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150192782 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9986;RSQ=0.9721;ERATE=0.0004;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150192896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7240;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150193138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2495;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0007;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 150193160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4514;AVGPOST=0.9975;RSQ=0.9966;ERATE=0.0007;THETA=0.0004;AC=986;AN=2184 GT:DS:GL:BD 0.45146519 0 1 150193295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150193399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.8214;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150193526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0144;AVGPOST=0.9991;RSQ=0.9784;ERATE=0.0003;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150193578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2493;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0007;THETA=0.0003;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 150193608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2018;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0004;THETA=0.0007;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 150193648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8463;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150193841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.736;LDAF=0.0056;AVGPOST=0.9944;RSQ=0.6275;ERATE=0.0019;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150193983 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7600;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150194032 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0131;AVGPOST=0.9994;RSQ=0.9802;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150194174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8482;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150194181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1964;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=429;AN=2184 GT:DS:GL:BD 0.19642857 0 1 150194242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0927;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 150194265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0931;AVGPOST=0.9993;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 150194334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.9017;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150194437 . A ACCTG 16185 PASS INDEL;BAVGPOST=0.967;BRSQ=0.939;LDAF=0.4381;AVGPOST=0.9291;RSQ=0.8912;ERATE=0.0149;THETA=0.0002;AC=960;AN=2184 GT:DS:GL:BD 0.43956044 0 1 150194467 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.719;LDAF=0.0697;AVGPOST=0.9462;RSQ=0.6923;ERATE=0.0081;THETA=0.0004;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 150194479 . T TC 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0032;AVGPOST=0.9960;RSQ=0.4804;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150194499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150194549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150194803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2004;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0003;THETA=0.0002;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 150194923 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150194973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150195030 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150195031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150195100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150195227 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150195268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6630;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150195294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7470;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150195396 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0044;AVGPOST=0.9982;RSQ=0.8429;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150195568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.997;LDAF=0.4131;AVGPOST=0.9975;RSQ=0.9965;ERATE=0.0008;THETA=0.0001;AC=903;AN=2184 GT:DS:GL:BD 0.41346154 0 1 150195623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6525;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150195770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0266;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 150195922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7781;ERATE=0.0008;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150195990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150195998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6893;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150196091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150196124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7364;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150196203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150196289 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150196345 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7743;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150196419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9992;RSQ=0.9726;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150196440 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150196447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150196477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9156;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150196536 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150196663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7743;ERATE=0.0005;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150196769 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150196793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7093;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150196825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8141;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0004;THETA=0.0006;AC=1779;AN=2184 GT:DS:GL:BD 0.81456041 1 1 150196828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7400;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150196987 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7980;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150197068 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6646;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150197098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9419;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150197134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9998;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150197149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5521;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150197152 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150197335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150197422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0247;AVGPOST=0.9995;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150197446 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8206;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150197540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150197568 . CT C 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6034;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150197600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150197611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7041;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150197625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0214;AVGPOST=0.9989;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150197717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150197726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8921;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150197769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7398;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150197886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150197954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0922;AVGPOST=0.9986;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 150198079 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0925;AVGPOST=0.9988;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 150198206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2441;AVGPOST=0.9958;RSQ=0.9920;ERATE=0.0004;THETA=0.0002;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 150198379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150198426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.962;LDAF=0.0902;AVGPOST=0.9952;RSQ=0.9808;ERATE=0.0004;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 150198442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150198448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150198571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150198615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0247;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0024;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150198736 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4998;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150198860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9072;ERATE=0.0003;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150198882 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150198970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5497;AVGPOST=0.9926;RSQ=0.9883;ERATE=0.0009;THETA=0.0003;AC=1201;AN=2184 GT:DS:GL:BD 0.54990840 1 1 150199004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3000;AVGPOST=0.9941;RSQ=0.9882;ERATE=0.0006;THETA=0.0007;AC=653;AN=2184 GT:DS:GL:BD 0.29899266 0 1 150199014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6359;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150199238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150199407 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150199415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.879;LDAF=0.0605;AVGPOST=0.9839;RSQ=0.8893;ERATE=0.0007;THETA=0.0023;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 150199497 . T TA 484 PASS INDEL;BAVGPOST=0.993;BRSQ=0.831;LDAF=0.0190;AVGPOST=0.9876;RSQ=0.7195;ERATE=0.0041;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150199526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.808;LDAF=0.2345;AVGPOST=0.9510;RSQ=0.9014;ERATE=0.0033;THETA=0.0004;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 150199606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0165;AVGPOST=0.9825;RSQ=0.5973;ERATE=0.0011;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150199623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.323;LDAF=0.0594;AVGPOST=0.9378;RSQ=0.5663;ERATE=0.0017;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150199669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9104;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150200045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150200085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150200114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8891;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150200118 . T TA 246 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150200176 . C CA 203 PASS INDEL;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7166;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150200317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5548;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150200389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150200482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7222;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150200498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9524;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150200530 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0387;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 150200532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6706;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150200576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0065;AVGPOST=0.9992;RSQ=0.9461;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150200593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0068;AVGPOST=0.9991;RSQ=0.9442;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150200680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.8806;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150200692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2865;AVGPOST=0.9965;RSQ=0.9925;ERATE=0.0005;THETA=0.0004;AC=624;AN=2184 GT:DS:GL:BD 0.28571430 0 1 150200736 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150200782 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150200918 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5241;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150201060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0262;AVGPOST=0.9956;RSQ=0.9339;ERATE=0.0007;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150201087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.917;LDAF=0.0839;AVGPOST=0.9818;RSQ=0.9169;ERATE=0.0026;THETA=0.0004;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 150201183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5792;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150201308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6422;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150201379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0099;AVGPOST=0.9988;RSQ=0.9525;ERATE=0.0013;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150201423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9364;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150201424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0351;AVGPOST=0.9972;RSQ=0.9699;ERATE=0.0003;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 150201615 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0335;AVGPOST=0.9995;RSQ=0.9930;ERATE=0.0003;THETA=0.0007;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 150201626 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150201665 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.897;LDAF=0.0080;AVGPOST=0.9975;RSQ=0.8911;ERATE=0.0003;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150201703 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0146;AVGPOST=0.9980;RSQ=0.9413;ERATE=0.0003;THETA=0.0057;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150201725 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2451;AVGPOST=0.9960;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 150201753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9048;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150201822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5634;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150202059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0036;AVGPOST=0.9964;RSQ=0.6468;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150202094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6665;ERATE=0.0005;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150202114 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202413 . A AATATATAAAT 7242 PASS INDEL;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0150;AVGPOST=0.9974;RSQ=0.9290;ERATE=0.0004;THETA=0.0018;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150202446 . T TAGGAGCACAA 924 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150202518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202521 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9400;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150202523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8690;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150202576 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202618 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5627;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150202850 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9422;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150202894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9272;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150202933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0077;AVGPOST=0.9975;RSQ=0.8937;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150203038 . GA G 384 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150203082 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150203106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9034;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150203352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150203439 . GTTGTTGTTGT G 18718 PASS INDEL;BAVGPOST=0.856;BRSQ=0.721;LDAF=0.3725;AVGPOST=0.8419;RSQ=0.7265;ERATE=0.0698;THETA=0.0043;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 150203457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0087;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150203535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150203618 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.780;LDAF=0.0072;AVGPOST=0.9974;RSQ=0.8426;ERATE=0.0008;THETA=0.0023;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150203648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7771;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150203712 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0037;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150203738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9622;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150203764 . TC T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150203847 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8147;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150203935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0886;AVGPOST=0.9979;RSQ=0.9894;ERATE=0.0007;THETA=0.0093;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150204078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204140 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4709;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0879;AVGPOST=0.9976;RSQ=0.9890;ERATE=0.0004;THETA=0.0048;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150204351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9396;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150204520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.5390;ERATE=0.0003;THETA=0.0128;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204523 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.5676;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204532 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150204604 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150204683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9191;ERATE=0.0005;THETA=0.0082;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150204705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9664;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150204760 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150204809 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0049;AVGPOST=0.9991;RSQ=0.9176;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150204819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9419;ERATE=0.0003;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150204870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150205026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6613;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150205110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6585;ERATE=0.0003;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150205159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0037;AVGPOST=0.9978;RSQ=0.7337;ERATE=0.0005;THETA=0.0122;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150205162 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6351;ERATE=0.0004;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150205222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5323;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150205357 . AAC A 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150205474 . GTGT G 591 PASS INDEL;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0004;THETA=0.0060;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150205592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.9680;AVGPOST=0.9934;RSQ=0.9160;ERATE=0.0013;THETA=0.0009;AC=2115;AN=2184 GT:DS:GL:BD 0.96840662 1 1 150205684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5338;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150205704 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0708;AVGPOST=0.9977;RSQ=0.9879;ERATE=0.0004;THETA=0.0032;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 150205711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150205742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.962;LDAF=0.0493;AVGPOST=0.9922;RSQ=0.9361;ERATE=0.0004;THETA=0.0018;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 150205809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.7583;AVGPOST=0.9954;RSQ=0.9912;ERATE=0.0007;THETA=0.0009;AC=1657;AN=2184 GT:DS:GL:BD 0.75869966 1 1 150205943 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9857;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150205962 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150205974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7320;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150205989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150206040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0155;AVGPOST=0.9971;RSQ=0.9206;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150206460 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8873;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150206487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9779;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150206670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0106;AVGPOST=0.9981;RSQ=0.9208;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150206723 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150206738 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150206823 . CTCTT C 1662 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0113;AVGPOST=0.9988;RSQ=0.9517;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150206828 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150206878 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0092;AVGPOST=0.9987;RSQ=0.9437;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150207005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150207287 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150207472 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150207557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0112;AVGPOST=0.9993;RSQ=0.9701;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150207639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4779;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207744 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4941;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207764 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150207803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6160;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8627;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150207875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207876 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150207975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0711;AVGPOST=0.9986;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 150208014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9228;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150208133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.5348;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150208170 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8987;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150208178 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9730;AVGPOST=0.9971;RSQ=0.9608;ERATE=0.0004;THETA=0.0011;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 150208187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9734;AVGPOST=0.9978;RSQ=0.9671;ERATE=0.0004;THETA=0.0006;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 150208412 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150208530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.7076;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150208659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5674;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150208691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150208745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150208749 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0159;AVGPOST=0.9959;RSQ=0.9008;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150208803 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.6845;AVGPOST=0.9961;RSQ=0.9944;ERATE=0.0005;THETA=0.0003;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 150208814 . AT A 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6448;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150208895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5968;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150208925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150208993 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.8929;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150209116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5458;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150209129 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9609;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150209146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0259;AVGPOST=0.9974;RSQ=0.9572;ERATE=0.0004;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150209164 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9516;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150209212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3880;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150209229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4581;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150209273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0044;AVGPOST=0.9972;RSQ=0.7274;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150209304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0267;AVGPOST=0.9986;RSQ=0.9747;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150209316 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9390;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150209348 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0111;AVGPOST=0.9986;RSQ=0.9476;ERATE=0.0003;THETA=0.0001;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150209363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=0.9991;RSQ=0.9703;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150209607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7477;AVGPOST=0.9979;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 150209753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0032;AVGPOST=0.9960;RSQ=0.5334;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150209810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150209888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0063;AVGPOST=0.9968;RSQ=0.8275;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150209922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7905;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150209959 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9210;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150210000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.665;LDAF=0.0134;AVGPOST=0.9863;RSQ=0.6093;ERATE=0.0041;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150210293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7424;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150210356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150210368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150210484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150210510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8772;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150210607 rs66732241 AGTTT A 47724 PASS INDEL;BAVGPOST=0.986;BRSQ=0.980;LDAF=0.4408;AVGPOST=0.9651;RSQ=0.9503;ERATE=0.0037;THETA=0.0002;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 150210679 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5112;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150210721 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7513;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150210810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9052;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150210824 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9389;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150210867 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9141;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150210883 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150210891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9985;RSQ=0.9485;ERATE=0.0004;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150210939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150211000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4559;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150211060 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7497;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0005;THETA=0.0006;AC=1639;AN=2184 GT:DS:GL:BD 0.75045788 1 1 150211126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.7455;AVGPOST=0.9957;RSQ=0.9911;ERATE=0.0006;THETA=0.0004;AC=1629;AN=2184 GT:DS:GL:BD 0.74587911 1 1 150211257 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150211271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9482;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150211326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.7473;AVGPOST=0.9947;RSQ=0.9885;ERATE=0.0012;THETA=0.0002;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 150211357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.6224;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150211572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.7492;AVGPOST=0.9967;RSQ=0.9927;ERATE=0.0007;THETA=0.0003;AC=1639;AN=2184 GT:DS:GL:BD 0.75045788 1 1 150211648 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6864;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150211730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150211937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9141;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150212121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150212211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9982;RSQ=0.9194;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150212331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150212465 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5623;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150212578 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6359;AVGPOST=0.9987;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=1389;AN=2184 GT:DS:GL:BD 0.63598901 1 1 150212585 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9985;RSQ=0.9196;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150212758 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0051;AVGPOST=0.9941;RSQ=0.5523;ERATE=0.0011;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150212843 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.877;LDAF=0.0181;AVGPOST=0.9969;RSQ=0.9309;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150213158 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7234;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150213186 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0075;AVGPOST=0.9993;RSQ=0.9570;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150213305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7986;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150213315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0193;AVGPOST=0.9992;RSQ=0.9822;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150213342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5687;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150213355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6611;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150213412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150213522 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6712;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=1466;AN=2184 GT:DS:GL:BD 0.67124540 1 1 150213564 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.5950;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150213593 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150213722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7309;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150213769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6411;AVGPOST=0.9845;RSQ=0.9773;ERATE=0.0068;THETA=0.0007;AC=1407;AN=2184 GT:DS:GL:BD 0.64423078 1 1 150213805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0097;AVGPOST=0.9983;RSQ=0.9241;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150213814 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150213854 . TG T 229 PASS INDEL;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8197;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150213900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.7636;AVGPOST=0.9978;RSQ=0.9951;ERATE=0.0005;THETA=0.0005;AC=1669;AN=2184 GT:DS:GL:BD 0.76419413 1 1 150213935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0173;AVGPOST=0.9977;RSQ=0.9455;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150213979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.967;LDAF=0.0804;AVGPOST=0.9931;RSQ=0.9639;ERATE=0.0005;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 150213987 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0494;AVGPOST=0.9973;RSQ=0.9765;ERATE=0.0005;THETA=0.0004;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 150213988 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8889;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150214008 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5149;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150214025 . G GA 106 PASS INDEL;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7722;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150214052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0031;AVGPOST=0.9965;RSQ=0.5679;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150214109 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0041;AVGPOST=0.9989;RSQ=0.8921;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150214158 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.744;LDAF=0.0091;AVGPOST=0.9952;RSQ=0.7804;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150214245 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9048;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150214386 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6465;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150214406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6233;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150214462 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1877;AVGPOST=0.9953;RSQ=0.9884;ERATE=0.0016;THETA=0.0002;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 150214471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.1904;AVGPOST=0.9968;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 150214518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150214552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8765;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150214709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150214768 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8564;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150214806 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9014;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150214820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.2486;AVGPOST=0.9963;RSQ=0.9914;ERATE=0.0007;THETA=0.0004;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 150214883 . A AG 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5084;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150214896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0047;AVGPOST=0.9960;RSQ=0.6676;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150214929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0441;AVGPOST=0.9978;RSQ=0.9828;ERATE=0.0003;THETA=0.0002;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 150215429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.929;LDAF=0.1708;AVGPOST=0.9580;RSQ=0.8955;ERATE=0.0033;THETA=0.0002;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 150215559 . T TG 39 PASS INDEL;BAVGPOST=0.979;BRSQ=0.276;LDAF=0.0574;AVGPOST=0.9259;RSQ=0.5008;ERATE=0.0042;THETA=0.0004;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 150215598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.932;LDAF=0.0806;AVGPOST=0.9666;RSQ=0.8450;ERATE=0.0027;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 150215607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.692;LDAF=0.8578;AVGPOST=0.8898;RSQ=0.6726;ERATE=0.0157;THETA=0.0003;AC=1938;AN=2184 GT:DS:GL:BD 0.88736266 1 1 150215723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9985;RSQ=0.9324;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150215868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.9383;AVGPOST=0.9973;RSQ=0.9803;ERATE=0.0003;THETA=0.0004;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 150215893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0458;AVGPOST=0.9987;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 150215938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150215975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0463;AVGPOST=0.9993;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 150216000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5244;AVGPOST=0.9772;RSQ=0.9662;ERATE=0.0043;THETA=0.0004;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 150216030 . C CTT 51 PASS INDEL;BAVGPOST=0.998;BRSQ=0.755;LDAF=0.0121;AVGPOST=0.9837;RSQ=0.4915;ERATE=0.0033;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150216118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0465;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 150216163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7303;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150216265 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7336;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150216344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150216432 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0443;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0003;THETA=0.0009;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 150216454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9835;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150216478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150216486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0046;AVGPOST=0.9981;RSQ=0.8356;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150216618 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150216629 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6576;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150216713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9381;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150216746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7552;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150216755 . C CT 185 PASS INDEL;BAVGPOST=0.995;BRSQ=0.756;LDAF=0.0122;AVGPOST=0.9903;RSQ=0.6903;ERATE=0.0013;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150216884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0034;AVGPOST=0.9961;RSQ=0.5657;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150217062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.715;LDAF=0.0122;AVGPOST=0.9836;RSQ=0.4787;ERATE=0.0028;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150217181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9995;RSQ=0.9915;ERATE=0.0003;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150217246 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0283;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150217254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5330;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150217284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0071;AVGPOST=0.9969;RSQ=0.8380;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150217310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0650;AVGPOST=0.9972;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 150217348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150217478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0525;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0002;THETA=0.0002;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 150217707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150217765 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9645;ERATE=0.0002;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150217768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9272;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150217810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8463;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150217828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0467;AVGPOST=0.9997;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 150217887 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150218021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150218093 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8397;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150218215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9978;RSQ=0.7979;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150218226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0085;AVGPOST=0.9985;RSQ=0.9265;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150218272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9396;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150218278 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8346;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150218291 . GTA G 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150218298 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8721;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150218378 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0067;AVGPOST=0.9984;RSQ=0.9073;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150218406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9480;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150218411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0532;AVGPOST=0.9973;RSQ=0.9838;ERATE=0.0006;THETA=0.0004;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 150218412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0091;AVGPOST=0.9951;RSQ=0.7997;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150218459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0020;AVGPOST=0.9981;RSQ=0.6124;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150218484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7825;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150218667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2486;AVGPOST=0.9980;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 150218703 . AC A 875 PASS INDEL;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9426;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150218732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150218788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8148;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150218840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8755;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150218865 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.8157;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150218868 . TG T 264 PASS INDEL;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8861;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150218939 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150218969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7180;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150219096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150219325 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7512;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150219481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150219516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8612;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150219585 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7817;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150219684 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9403;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150219728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6325;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150219733 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150219750 . A AT 8457 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0694;AVGPOST=0.9973;RSQ=0.9838;ERATE=0.0005;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 150219950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7944;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150219964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150220041 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5627;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150220045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8494;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150220214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150220285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4521;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150220499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7051;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150220548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150220572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6828;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150220657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0869;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0002;THETA=0.0007;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 150220797 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7687;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150220810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150220814 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8702;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150220831 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0209;AVGPOST=0.9993;RSQ=0.9846;ERATE=0.0003;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150220856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150221020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5435;ERATE=0.0010;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150221305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150221334 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9666;ERATE=0.0002;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150221351 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150221386 . T TA 131 PASS INDEL;BAVGPOST=0.997;BRSQ=0.482;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.5093;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150221419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150221530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150221562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150221592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0495;AVGPOST=0.9983;RSQ=0.9868;ERATE=0.0003;THETA=0.0009;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 150221621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150221748 . CA C 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7786;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150221761 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150222023 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.895;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9652;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150222043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6061;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150222045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150222046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.7010;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150222184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6430;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150222202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9986;RSQ=0.3077;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150222252 . AAAAC A 161 PASS INDEL;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8816;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150222258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6548;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150222357 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5888;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150222365 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0193;AVGPOST=0.9998;RSQ=0.9942;ERATE=0.0002;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150222485 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150222667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0127;AVGPOST=0.9994;RSQ=0.9812;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150222691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9716;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150222696 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7312;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150222724 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6785;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150222769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7799;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150222781 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3013;AVGPOST=0.9949;RSQ=0.9912;ERATE=0.0008;THETA=0.0002;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 150222859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150222879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150222985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0007;AVGPOST=0.9987;RSQ=0.2909;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150223062 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150223072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150223137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7564;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150223147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150223183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3153;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0006;THETA=0.0003;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 150223234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.852;LDAF=0.0155;AVGPOST=0.9989;RSQ=0.9690;ERATE=0.0003;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150223270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6962;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150223315 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150223427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0213;AVGPOST=0.9989;RSQ=0.9773;ERATE=0.0004;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150223515 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9079;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150223533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8214;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150223647 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7626;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150223799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150223825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0870;AVGPOST=0.9985;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 150223942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150223999 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224038 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150224052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3154;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0002;THETA=0.0003;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 150224243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224270 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0069;AVGPOST=0.9994;RSQ=0.9625;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150224411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5678;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150224450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150224475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6805;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150224552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5093;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224601 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7588;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150224613 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0013;AVGPOST=0.9981;RSQ=0.4235;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0113;AVGPOST=0.9984;RSQ=0.9379;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150224952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0096;AVGPOST=0.9978;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150224985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0134;AVGPOST=0.9982;RSQ=0.9464;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150224993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4880;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150224997 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5607;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150225005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7076;ERATE=0.0002;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150225022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7667;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150225166 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5694;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150225364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3249;AVGPOST=0.9963;RSQ=0.9938;ERATE=0.0006;THETA=0.0005;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 150225412 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7593;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150225473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.8003;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150225530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7386;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150225542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9067;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150225642 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6016;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150225677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0002;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150225792 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0137;AVGPOST=0.9988;RSQ=0.9620;ERATE=0.0002;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150225811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0002;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150225970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8572;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=1871;AN=2184 GT:DS:GL:BD 0.85668498 1 1 150226067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.9015;ERATE=0.0005;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150226133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8567;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0002;THETA=0.0007;AC=1871;AN=2184 GT:DS:GL:BD 0.85668498 1 1 150226187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150226318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150226358 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150226396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0112;AVGPOST=0.9989;RSQ=0.9555;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150226554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.6033;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150226584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150226610 . GA G 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5195;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150226717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.869;LDAF=0.0111;AVGPOST=0.9978;RSQ=0.9163;ERATE=0.0005;THETA=0.0013;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150226945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5565;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150227131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8877;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150227206 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.9963;AVGPOST=0.9993;RSQ=0.9226;ERATE=0.0003;THETA=0.0016;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 150227271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4927;ERATE=0.0005;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150227383 . C CA 56830 PASS INDEL;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.3262;AVGPOST=0.9862;RSQ=0.9802;ERATE=0.0005;THETA=0.0006;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 150227403 rs71586991 T TG 56083 PASS INDEL;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3262;AVGPOST=0.9862;RSQ=0.9800;ERATE=0.0005;THETA=0.0007;AC=710;AN=2184 GT:DS:GL:BD 0.32509157 0 1 150227408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150227450 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7913;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150227478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.794;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8854;ERATE=0.0003;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150227704 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9843;ERATE=0.0002;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150227736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150228059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8662;AVGPOST=0.9980;RSQ=0.9946;ERATE=0.0004;THETA=0.0009;AC=1890;AN=2184 GT:DS:GL:BD 0.86538464 1 1 150228060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9780;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150228076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9301;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0002;THETA=0.0007;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 150228451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150228453 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0192;AVGPOST=0.9990;RSQ=0.9779;ERATE=0.0002;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150228500 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150228503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150228525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9551;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150228542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7398;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150228660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4485;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150228687 rs80267085 GT G 6888 PASS INDEL;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0731;AVGPOST=0.9978;RSQ=0.9871;ERATE=0.0005;THETA=0.0016;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 150228725 . TA T 292 PASS INDEL;BAVGPOST=0.987;BRSQ=0.915;LDAF=0.0791;AVGPOST=0.9755;RSQ=0.8668;ERATE=0.0005;THETA=0.0009;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 150228727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7407;ERATE=0.0003;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150228745 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8735;ERATE=0.0006;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150228918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150229028 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6180;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150229141 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0675;AVGPOST=0.9984;RSQ=0.9901;ERATE=0.0004;THETA=0.0007;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 150229174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5682;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150229223 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0058;AVGPOST=0.9965;RSQ=0.7619;ERATE=0.0007;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150229311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0023;AVGPOST=0.9967;RSQ=0.4505;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150229354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.796;LDAF=0.0228;AVGPOST=0.9943;RSQ=0.9022;ERATE=0.0006;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150229360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0198;AVGPOST=0.9988;RSQ=0.9750;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150229378 . A AT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6881;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150229483 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4817;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150229484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9308;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150229492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6409;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150229612 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7579;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150229799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150229814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7893;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150229916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7024;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150229947 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0605;AVGPOST=0.9989;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 150230002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5995;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150230227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8298;ERATE=0.0006;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150230371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0138;AVGPOST=0.9978;RSQ=0.9312;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150230604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9971;RSQ=0.8466;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150230650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0002;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150230651 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1017;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 150230682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0249;AVGPOST=0.9989;RSQ=0.9819;ERATE=0.0004;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150230699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0976;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0004;THETA=0.0007;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 150230736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3881;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150230819 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.1022;AVGPOST=0.9992;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 150230871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8901;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150230912 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.787;LDAF=0.0098;AVGPOST=0.9980;RSQ=0.9211;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150230933 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5454;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150231138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1033;AVGPOST=0.9957;RSQ=0.9844;ERATE=0.0007;THETA=0.0002;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 150231218 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2968;AVGPOST=0.9976;RSQ=0.9953;ERATE=0.0006;THETA=0.0005;AC=647;AN=2184 GT:DS:GL:BD 0.29624543 0 1 150231219 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5184;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150231426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0731;AVGPOST=0.9981;RSQ=0.9904;ERATE=0.0005;THETA=0.0002;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 150231453 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5652;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0005;THETA=0.0003;AC=1233;AN=2184 GT:DS:GL:BD 0.56456041 1 1 150231492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.967;LDAF=0.3937;AVGPOST=0.9780;RSQ=0.9726;ERATE=0.0017;THETA=0.0008;AC=857;AN=2184 GT:DS:GL:BD 0.39239928 0 1 150231719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8370;ERATE=0.0002;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150231734 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0051;AVGPOST=0.9994;RSQ=0.9477;ERATE=0.0002;THETA=0.0018;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150231804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0371;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0002;THETA=0.0010;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150231894 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150232026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4394;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150232031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0733;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 150232104 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7407;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150232184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0987;AVGPOST=0.9982;RSQ=0.9928;ERATE=0.0006;THETA=0.0005;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 150232637 rs74649573 T TA 44984 PASS INDEL;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.5591;AVGPOST=0.9707;RSQ=0.9598;ERATE=0.0070;THETA=0.0007;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 150232834 . CAG C 96 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6306;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150233015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9307;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150233071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150233105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8060;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150233131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0257;AVGPOST=0.9989;RSQ=0.9872;ERATE=0.0003;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150233133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150233176 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0371;AVGPOST=0.9995;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150233260 . TA T 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0036;AVGPOST=0.9947;RSQ=0.4638;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150233291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8614;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150233356 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.1013;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 150233386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0153;AVGPOST=0.9986;RSQ=0.9639;ERATE=0.0002;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150233394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.867;LDAF=0.0126;AVGPOST=0.9984;RSQ=0.9492;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150233433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7981;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150233513 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5658;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=1236;AN=2184 GT:DS:GL:BD 0.56593406 1 1 150233597 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.6033;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150233609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5660;AVGPOST=0.9974;RSQ=0.9963;ERATE=0.0005;THETA=0.0009;AC=1236;AN=2184 GT:DS:GL:BD 0.56593406 1 1 150233672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6589;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150233763 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.757;LDAF=0.0061;AVGPOST=0.9955;RSQ=0.7101;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150233850 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0605;AVGPOST=0.9996;RSQ=0.9971;ERATE=0.0003;THETA=0.0006;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 150233997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.872;LDAF=0.0203;AVGPOST=0.9965;RSQ=0.9321;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150234006 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7173;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150234290 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150234368 . AC A 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6518;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150234518 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150234535 . A AG 671 PASS INDEL;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0152;AVGPOST=0.9980;RSQ=0.9491;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150234579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4536;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150234739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5565;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150234793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8958;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150234863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4868;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150234936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0104;AVGPOST=0.9961;RSQ=0.8515;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150235002 . CA C 63 PASS INDEL;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.5183;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150235028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5057;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150235055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3895;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150235102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.650;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.5198;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150235139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3275;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0005;THETA=0.0004;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 150235164 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8833;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150235201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9301;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150235231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8234;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150235250 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.883;LDAF=0.0209;AVGPOST=0.9932;RSQ=0.8726;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150235263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150235685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0092;AVGPOST=0.9986;RSQ=0.9433;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150235762 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9032;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150235768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150235787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7894;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150235811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8283;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150235854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6101;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150235855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9251;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150235871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6968;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150236001 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7089;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150236110 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0040;AVGPOST=0.9977;RSQ=0.7846;ERATE=0.0003;THETA=0.0039;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150236185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6998;AVGPOST=0.9916;RSQ=0.9873;ERATE=0.0016;THETA=0.0003;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 150236193 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3582;AVGPOST=0.9991;RSQ=0.9987;ERATE=0.0004;THETA=0.0004;AC=783;AN=2184 GT:DS:GL:BD 0.35851648 0 1 150236431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150236500 . TC T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150236709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9384;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150236774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0282;AVGPOST=0.9990;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150236827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9260;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150236913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3582;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0006;THETA=0.0009;AC=783;AN=2184 GT:DS:GL:BD 0.35851648 0 1 150236914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7661;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150236939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0971;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 150236944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150236986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5949;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150237101 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150237134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2208;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 150237246 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2211;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 150237375 . AGT A 102 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4679;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150237378 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5934;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150237674 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0038;AVGPOST=0.9976;RSQ=0.7512;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150237835 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9064;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150238024 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7807;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150238147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150238148 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150238165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9571;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150238182 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9981;RSQ=0.8972;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150238348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1968;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 150238430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6855;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150238792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0729;AVGPOST=0.9968;RSQ=0.9820;ERATE=0.0004;THETA=0.0002;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 150239047 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5774;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150239062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7302;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150239185 . A AAAC 14754 PASS INDEL;BAVGPOST=0.982;BRSQ=0.959;LDAF=0.2131;AVGPOST=0.9869;RSQ=0.9735;ERATE=0.0026;THETA=0.0003;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 150239257 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8031;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150239266 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150239398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0064;AVGPOST=0.9948;RSQ=0.7033;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150239402 . A ATG 365 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9684;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150239421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9877;ERATE=0.0002;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150239449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150239616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150239757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150239760 . CCT C 221 PASS INDEL;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150239831 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6204;ERATE=0.0002;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150239910 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7156;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150240025 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0532;AVGPOST=0.9990;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 150240059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150240070 . AT A 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7565;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150240142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.890;LDAF=0.0194;AVGPOST=0.9947;RSQ=0.8971;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150240183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8961;ERATE=0.0002;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150240207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.716;LDAF=0.0059;AVGPOST=0.9968;RSQ=0.8060;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150240329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6925;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150240380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8219;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150240412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8299;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150240438 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150240458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9840;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150240486 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150240565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1300;AVGPOST=0.9967;RSQ=0.9893;ERATE=0.0006;THETA=0.0012;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 150240583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2498;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 150240708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2257;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 150240738 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5083;AVGPOST=0.9968;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 150240852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5225;AVGPOST=0.9962;RSQ=0.9950;ERATE=0.0002;THETA=0.0010;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 150240867 . AT A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150241001 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.9095;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150241007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150241023 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9053;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150241085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7444;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150241158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150241163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150241245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0372;AVGPOST=0.9996;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150241264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6935;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150241269 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150241315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8575;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150241790 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5085;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150241819 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9805;ERATE=0.0002;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150241832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0002;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150241835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150241925 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7144;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150241936 . A AGACTCCCCG 3539 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9709;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150241998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150242271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7571;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150242372 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0373;AVGPOST=0.9994;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150242487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8370;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150242549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8593;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150242606 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150242655 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0564;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 150242656 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9110;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150242663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5118;AVGPOST=0.9911;RSQ=0.9873;ERATE=0.0018;THETA=0.0005;AC=1119;AN=2184 GT:DS:GL:BD 0.51236266 1 1 150242819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150242907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150242976 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2422;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0004;THETA=0.0017;AC=529;AN=2184 GT:DS:GL:BD 0.24221611 0 1 150243108 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150243168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8212;ERATE=0.0014;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150243204 . TC T 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7192;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150243271 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.492;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.4833;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150243303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150243359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0073;AVGPOST=0.9997;RSQ=0.9793;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150243367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6921;ERATE=0.0013;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150243368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6648;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150243446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8988;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150243518 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6332;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150243631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150243648 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150243653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0372;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150243699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150243715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0169;AVGPOST=0.9990;RSQ=0.9776;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150243806 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0002;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150243808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150243812 . AATT A 449 PASS INDEL;BAVGPOST=0.997;BRSQ=0.763;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8100;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150243842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5879;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150243846 rs11461241 T TG 34034 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2513;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0006;THETA=0.0006;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 150243897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6700;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150243958 . TAGTG T 405 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0100;AVGPOST=0.9963;RSQ=0.8733;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150243981 rs78467964 TTTCA T 19611 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2252;AVGPOST=0.9978;RSQ=0.9954;ERATE=0.0005;THETA=0.0003;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 150244092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6144;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150244394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0635;AVGPOST=0.9991;RSQ=0.9937;ERATE=0.0004;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 150244431 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1673;AVGPOST=0.9948;RSQ=0.9880;ERATE=0.0009;THETA=0.0002;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 150244823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150245002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9995;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150245248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9886;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 150245305 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150245377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1669;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 150245505 . TTC T 161 PASS INDEL;BAVGPOST=0.983;BRSQ=0.841;LDAF=0.0567;AVGPOST=0.9898;RSQ=0.9277;ERATE=0.0004;THETA=0.0002;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 150245531 . TCTC T 5598 PASS INDEL;BAVGPOST=0.991;BRSQ=0.926;LDAF=0.0635;AVGPOST=0.9981;RSQ=0.9864;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 150245532 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0081;AVGPOST=0.9977;RSQ=0.8896;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150245575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6751;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150245657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8537;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150245691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7008;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150245717 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150245763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8512;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150245817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6722;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150245844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6130;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150245881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0197;AVGPOST=0.9992;RSQ=0.9836;ERATE=0.0003;THETA=0.0002;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150245952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150246010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150246013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150246095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5285;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150246369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2368;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 150246373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150246486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3415;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 150246600 . A ATT 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150246703 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8627;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150246841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5692;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150247090 . GATC G 171 PASS INDEL;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6703;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150247100 rs35150123 C CA 21984 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1647;AVGPOST=0.9950;RSQ=0.9878;ERATE=0.0008;THETA=0.0003;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 150247103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3596;AVGPOST=0.9953;RSQ=0.9918;ERATE=0.0014;THETA=0.0004;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 150247153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4826;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150247171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.9884;AVGPOST=0.9968;RSQ=0.8838;ERATE=0.0007;THETA=0.0008;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 150247201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0078;AVGPOST=0.9965;RSQ=0.8476;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150247249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.950;LDAF=0.1126;AVGPOST=0.9905;RSQ=0.9592;ERATE=0.0015;THETA=0.0004;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150247254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0412;AVGPOST=0.9933;RSQ=0.9374;ERATE=0.0009;THETA=0.0002;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 150247285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.962;LDAF=0.1713;AVGPOST=0.9721;RSQ=0.9353;ERATE=0.0037;THETA=0.0006;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 150247336 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.971;LDAF=0.2590;AVGPOST=0.9561;RSQ=0.9186;ERATE=0.0030;THETA=0.0003;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 150247400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.921;LDAF=0.0682;AVGPOST=0.9884;RSQ=0.9284;ERATE=0.0013;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 150247436 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0030;AVGPOST=0.9969;RSQ=0.6317;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150247514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9344;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150247621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0092;AVGPOST=0.9925;RSQ=0.6907;ERATE=0.0011;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150247706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7664;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150247707 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.743;LDAF=0.0106;AVGPOST=0.9937;RSQ=0.7563;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150247757 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0062;AVGPOST=0.9977;RSQ=0.8448;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150247766 rs10564415 CTGT C 1552 PASS INDEL;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0146;AVGPOST=0.9980;RSQ=0.9437;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150247807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5298;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150247929 rs34823278 CA C 10929 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1092;AVGPOST=0.9961;RSQ=0.9845;ERATE=0.0004;THETA=0.0002;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 150248020 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150248059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150248068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8596;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150248145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150248151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0191;AVGPOST=0.9990;RSQ=0.9817;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150248171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8730;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150248212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0331;AVGPOST=0.9994;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 150248394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3412;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0005;THETA=0.0002;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 150248457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6602;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150248483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7637;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150248538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0091;AVGPOST=0.9973;RSQ=0.8734;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150248747 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.3388;AVGPOST=0.9884;RSQ=0.9820;ERATE=0.0018;THETA=0.0003;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 150248790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.954;LDAF=0.2324;AVGPOST=0.9884;RSQ=0.9747;ERATE=0.0020;THETA=0.0004;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 150248822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0406;AVGPOST=0.9940;RSQ=0.9404;ERATE=0.0005;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150248823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0655;AVGPOST=0.9981;RSQ=0.9873;ERATE=0.0006;THETA=0.0004;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 150248827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.635;LDAF=0.9658;AVGPOST=0.9655;RSQ=0.6227;ERATE=0.0040;THETA=0.0003;AC=2126;AN=2184 GT:DS:GL:BD 0.97344321 1 1 150248897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0059;AVGPOST=0.9953;RSQ=0.6937;ERATE=0.0007;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150248914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.3662;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150248945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.6073;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150248960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2306;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 150249211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150249260 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0189;AVGPOST=0.9990;RSQ=0.9814;ERATE=0.0003;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150249354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.8962;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150249365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150249514 . TAC T 491 PASS INDEL;BAVGPOST=0.979;BRSQ=0.719;LDAF=0.0572;AVGPOST=0.9453;RSQ=0.5806;ERATE=0.0232;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 150249636 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150249646 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0190;AVGPOST=0.9987;RSQ=0.9729;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150249651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150249679 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4551;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150249773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0225;AVGPOST=0.9984;RSQ=0.9727;ERATE=0.0004;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150249914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6662;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150250008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5790;ERATE=0.0009;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150250144 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5482;AVGPOST=0.9949;RSQ=0.9924;ERATE=0.0014;THETA=0.0002;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 150250240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150250280 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0702;AVGPOST=0.9989;RSQ=0.9933;ERATE=0.0003;THETA=0.0002;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 150250611 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150250790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.908;LDAF=0.0101;AVGPOST=0.9983;RSQ=0.9434;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150250873 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0224;AVGPOST=0.9984;RSQ=0.9726;ERATE=0.0004;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150251048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6336;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150251232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150251233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6216;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150251282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150251315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9983;RSQ=0.9878;ERATE=0.0003;THETA=0.0002;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 150251355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7762;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150251499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150251524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3328;AVGPOST=0.9958;RSQ=0.9933;ERATE=0.0010;THETA=0.0009;AC=725;AN=2184 GT:DS:GL:BD 0.33195969 0 1 150251619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9523;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150251625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0105;AVGPOST=0.9985;RSQ=0.9465;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150251669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0168;AVGPOST=0.9983;RSQ=0.9634;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150251816 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7880;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150251819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150252292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3325;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 150252435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9536;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150252653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6982;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150252671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150252839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8414;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150252859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150252874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150252918 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4805;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 150252990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0148;AVGPOST=0.9984;RSQ=0.9605;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150253200 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6933;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150253250 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5377;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150253381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.950;LDAF=0.0383;AVGPOST=0.9958;RSQ=0.9590;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150253425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6830;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150253574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0155;AVGPOST=0.9991;RSQ=0.9812;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150253661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150253694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3288;AVGPOST=0.9967;RSQ=0.9950;ERATE=0.0007;THETA=0.0005;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 150253752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9386;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150253759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7668;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150253790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7179;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150253914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150253925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150254206 . TA T 1470 PASS INDEL;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0153;AVGPOST=0.9990;RSQ=0.9714;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150254265 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150254305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5500;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0005;THETA=0.0008;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 150254337 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4819;AVGPOST=0.9964;RSQ=0.9945;ERATE=0.0006;THETA=0.0005;AC=1053;AN=2184 GT:DS:GL:BD 0.48214287 0 1 150254405 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9414;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150254424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4190;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150254530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150254541 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.875;LDAF=0.0203;AVGPOST=0.9961;RSQ=0.9239;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150254552 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150254561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2809;AVGPOST=0.9970;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 150254603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8196;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150254620 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.7165;ERATE=0.0008;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150254770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0809;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0007;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 150254852 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8859;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150254868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0259;AVGPOST=0.9994;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150254887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0811;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 150254971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0252;AVGPOST=0.9989;RSQ=0.9799;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150255066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.4866;ERATE=0.0009;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150255111 . TC T 119 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150255118 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8345;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150255184 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150255254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7679;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150255323 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5300;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150255344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7625;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150255414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150255438 . TA T 6149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0510;AVGPOST=0.9953;RSQ=0.9678;ERATE=0.0010;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 150255498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.829;LDAF=0.0117;AVGPOST=0.9976;RSQ=0.9109;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150255707 . CTTG C 1274 PASS INDEL;BAVGPOST=0.996;BRSQ=0.761;LDAF=0.0104;AVGPOST=0.9947;RSQ=0.7873;ERATE=0.0006;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150255707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0108;AVGPOST=0.9977;RSQ=0.9193;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150255762 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2858;AVGPOST=0.9960;RSQ=0.9917;ERATE=0.0004;THETA=0.0003;AC=625;AN=2184 GT:DS:GL:BD 0.28617215 0 1 150255804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9990;RSQ=0.9170;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150255884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6218;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150255901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150256035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150256077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150256083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7220;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150256152 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150256234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5005;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150256296 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0499;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150256299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150256461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150256685 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0499;AVGPOST=0.9996;RSQ=0.9965;ERATE=0.0004;THETA=0.0008;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150256696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7869;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150256780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8977;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150256813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6812;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150256987 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8377;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150256991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.746;LDAF=0.0100;AVGPOST=0.9981;RSQ=0.9122;ERATE=0.0005;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150256997 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5361;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150257030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6638;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150257239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0314;AVGPOST=0.9990;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 150257343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0312;AVGPOST=0.9996;RSQ=0.9935;ERATE=0.0003;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 150257429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8280;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150257442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6630;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=1448;AN=2184 GT:DS:GL:BD 0.66300368 1 1 150257513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1406;AVGPOST=0.9935;RSQ=0.9792;ERATE=0.0004;THETA=0.0006;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 150257545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.880;LDAF=0.0168;AVGPOST=0.9985;RSQ=0.9641;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150257550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4828;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150257623 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150257666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4691;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150257715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150257845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7106;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150257870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8510;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150257893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0230;AVGPOST=0.9989;RSQ=0.9828;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150257958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.7956;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150258163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150258213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150258261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7995;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150258503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0068;AVGPOST=0.9995;RSQ=0.9629;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150258540 . ATAAAC A 240 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7813;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150258541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9820;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150258549 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4356;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150258576 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9172;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150258590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5536;AVGPOST=0.9937;RSQ=0.9903;ERATE=0.0011;THETA=0.0004;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 150258650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150258681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4481;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150258702 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150258758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7891;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150258794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7299;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150258857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2756;AVGPOST=0.9974;RSQ=0.9947;ERATE=0.0007;THETA=0.0016;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 150258875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6100;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150259013 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2755;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 150259052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150259086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8443;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150259111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150259162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150259191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150259273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150259311 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5669;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150259408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8512;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150259422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.6366;AVGPOST=0.9967;RSQ=0.9942;ERATE=0.0006;THETA=0.0003;AC=1394;AN=2184 GT:DS:GL:BD 0.63827837 1 1 150259456 . A AT 34 PASS INDEL;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0041;AVGPOST=0.9942;RSQ=0.4532;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150259525 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0345;AVGPOST=0.9992;RSQ=0.9903;ERATE=0.0003;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150259706 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150259807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150260138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150260186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150260194 . C CA 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5420;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150260220 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.945;LDAF=0.0549;AVGPOST=0.9933;RSQ=0.9541;ERATE=0.0005;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 150260406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.859;LDAF=0.0152;AVGPOST=0.9963;RSQ=0.9018;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150260455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6603;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150260570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.8844;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150260624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8374;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150260731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150260880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0061;AVGPOST=0.9975;RSQ=0.8368;ERATE=0.0003;THETA=0.0040;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150260911 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4068;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150261169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5041;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150261210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4635;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150261262 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150261349 . TCAAA T 304 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.7030;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150261387 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0066;AVGPOST=0.9975;RSQ=0.8525;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150261488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150261587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8160;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150261588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0381;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 150261658 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6915;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150261708 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.3832;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150261725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150261844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1000;AVGPOST=0.9985;RSQ=0.9923;ERATE=0.0004;THETA=0.0002;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 150261934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0116;AVGPOST=0.9985;RSQ=0.9458;ERATE=0.0003;THETA=0.0018;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150261947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150262012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150262032 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150262242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7948;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150262364 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7767;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150262460 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150262481 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9810;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150262499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0556;AVGPOST=0.9967;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 150262623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5507;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150262687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9884;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150262759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9226;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150262865 . C CA 21 PASS INDEL;BAVGPOST=0.996;BRSQ=0.821;LDAF=0.0130;AVGPOST=0.9918;RSQ=0.7488;ERATE=0.0009;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150263027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0119;AVGPOST=0.9984;RSQ=0.9413;ERATE=0.0004;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150263225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150263271 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150263292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3304;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 150263502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150263514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7184;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150263516 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5842;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150263541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150263545 . G GT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7985;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150263550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5365;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150263554 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5917;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150263569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150263703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150263754 . T TA 270 PASS INDEL;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8572;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150264004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0410;AVGPOST=0.9984;RSQ=0.9815;ERATE=0.0003;THETA=0.0003;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 150264076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6642;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150264081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9550;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150264194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150264207 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7337;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150264257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6649;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150264260 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7582;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150264334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0066;AVGPOST=0.9963;RSQ=0.7706;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150264414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8492;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150264454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5095;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150264528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9796;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150264532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9360;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150264601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7445;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150264658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0070;AVGPOST=0.9934;RSQ=0.6344;ERATE=0.0009;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150264901 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7774;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150264953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0160;AVGPOST=0.9990;RSQ=0.9721;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150265028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150265030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150265208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4978;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150265220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.6120;ERATE=0.0004;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150265537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150265684 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4287;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0004;THETA=0.0002;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 150265777 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9548;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150265789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150265965 rs5775611 G GA 22077 PASS INDEL;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.2961;AVGPOST=0.9785;RSQ=0.9644;ERATE=0.0031;THETA=0.0021;AC=643;AN=2184 GT:DS:GL:BD 0.29441392 0 1 150265993 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5683;AVGPOST=0.9935;RSQ=0.9905;ERATE=0.0009;THETA=0.0002;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 150266084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0026;AVGPOST=0.9998;RSQ=0.9672;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150266240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.9859;AVGPOST=0.9970;RSQ=0.9140;ERATE=0.0006;THETA=0.0002;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 150266314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1563;AVGPOST=0.9969;RSQ=0.9902;ERATE=0.0006;THETA=0.0003;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 150266357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9275;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150266427 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150266457 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150266482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.9857;AVGPOST=0.9974;RSQ=0.9320;ERATE=0.0004;THETA=0.0002;AC=2153;AN=2184 GT:DS:GL:BD 0.98580587 1 1 150266517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7848;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150266532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4240;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 150266591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1460;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 150266630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150266658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1456;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0002;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 150266706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150266707 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5491;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150266737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0057;AVGPOST=0.9989;RSQ=0.9390;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150266750 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5571;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150266799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1719;AVGPOST=0.9965;RSQ=0.9909;ERATE=0.0003;THETA=0.0001;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 150266830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1003;AVGPOST=0.9952;RSQ=0.9793;ERATE=0.0007;THETA=0.0002;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 150266851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150267031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9360;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150267037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8903;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150267169 rs34808196 TC T 29633 PASS INDEL;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2052;AVGPOST=0.9964;RSQ=0.9920;ERATE=0.0007;THETA=0.0003;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 150267271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5790;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150267305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9987;RSQ=0.9530;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150267325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2039;AVGPOST=0.9977;RSQ=0.9938;ERATE=0.0021;THETA=0.0002;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 150267608 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0104;AVGPOST=0.9993;RSQ=0.9707;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150267730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8212;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150267976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150267980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150268016 . A AT 19735 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1775;AVGPOST=0.9980;RSQ=0.9940;ERATE=0.0005;THETA=0.0002;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 150268303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9996;RSQ=0.9899;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150268306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.8003;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150268338 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8350;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150268362 . AGT A 18 PASS INDEL;BAVGPOST=0.997;BRSQ=0.662;LDAF=0.0072;AVGPOST=0.9932;RSQ=0.6260;ERATE=0.0018;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150268445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2955;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 150268516 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150268597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.5943;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150268610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3660;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0003;AC=798;AN=2184 GT:DS:GL:BD 0.36538461 0 1 150268631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8181;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150268643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150268675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6881;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150268756 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2952;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0006;THETA=0.0004;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 150268838 rs10691184 T TTG 14380 PASS INDEL;BAVGPOST=0.981;BRSQ=0.945;LDAF=0.1740;AVGPOST=0.9747;RSQ=0.9306;ERATE=0.0026;THETA=0.0003;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 150268954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0092;AVGPOST=0.9938;RSQ=0.7244;ERATE=0.0005;THETA=0.0001;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150268983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.965;LDAF=0.1755;AVGPOST=0.9924;RSQ=0.9787;ERATE=0.0011;THETA=0.0003;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 150269099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.646;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3552;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150269158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6715;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150269313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9575;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150269363 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1247;AVGPOST=0.9971;RSQ=0.9890;ERATE=0.0004;THETA=0.0002;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 150269409 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3688;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0005;THETA=0.0001;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 150269799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7600;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150269850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8050;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150270018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150270123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5332;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0008;THETA=0.0009;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 150270135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6064;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0004;THETA=0.0001;AC=1323;AN=2184 GT:DS:GL:BD 0.60576922 1 1 150270219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150270323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2589;AVGPOST=0.9976;RSQ=0.9946;ERATE=0.0004;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 150270378 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9380;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150270424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150270446 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5340;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150270608 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150270630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0104;AVGPOST=0.9984;RSQ=0.9400;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150270638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0815;AVGPOST=0.9963;RSQ=0.9808;ERATE=0.0003;THETA=0.0012;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 150270676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150270682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0471;AVGPOST=0.9975;RSQ=0.9772;ERATE=0.0004;THETA=0.0002;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 150270819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6793;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150270950 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150271051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4851;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7573;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150271274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5687;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6571;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150271501 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5046;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150271617 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150271642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0176;AVGPOST=0.9989;RSQ=0.9730;ERATE=0.0004;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150271672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6422;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150271785 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8782;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150271825 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0471;AVGPOST=0.9990;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 150271856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150271936 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150272045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2829;AVGPOST=0.9980;RSQ=0.9955;ERATE=0.0006;THETA=0.0005;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 150272071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5997;AVGPOST=0.9961;RSQ=0.9933;ERATE=0.0007;THETA=0.0003;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 150272112 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.8031;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150272123 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150272203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5841;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150272215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.954;LDAF=0.0455;AVGPOST=0.9989;RSQ=0.9885;ERATE=0.0004;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 150272317 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0049;AVGPOST=0.9950;RSQ=0.6493;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150272346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150272403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150272476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0212;AVGPOST=0.9942;RSQ=0.8914;ERATE=0.0005;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150272503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.9987;AVGPOST=0.9984;RSQ=0.5453;ERATE=0.0004;THETA=0.0003;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 150272538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9587;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150272650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0457;AVGPOST=0.9970;RSQ=0.9731;ERATE=0.0004;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 150272714 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0093;AVGPOST=0.9912;RSQ=0.6837;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150272724 . A AG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0037;AVGPOST=0.9963;RSQ=0.5792;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150272737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7686;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150272765 . A ATGT 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0045;AVGPOST=0.9945;RSQ=0.5204;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150272815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0069;AVGPOST=0.9954;RSQ=0.7431;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150272919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.726;LDAF=0.0068;AVGPOST=0.9936;RSQ=0.6370;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150272994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.655;LDAF=0.0058;AVGPOST=0.9953;RSQ=0.6780;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150272996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8706;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150273436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6108;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150273579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150273609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8179;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150273610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3974;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150273733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150273801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.7439;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150273896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.731;LDAF=0.0081;AVGPOST=0.9938;RSQ=0.6991;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150273900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150273927 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9989;RSQ=0.9422;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150274081 . G GT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6028;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150274107 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0048;AVGPOST=0.9959;RSQ=0.6604;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150274141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0436;AVGPOST=0.9983;RSQ=0.9832;ERATE=0.0005;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150274148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6684;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=1459;AN=2184 GT:DS:GL:BD 0.66804028 1 1 150274237 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3243;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150274334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0161;AVGPOST=0.9971;RSQ=0.9294;ERATE=0.0005;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150274336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.877;LDAF=0.0388;AVGPOST=0.9937;RSQ=0.9334;ERATE=0.0005;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 150274379 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8129;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150274403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0435;AVGPOST=0.9984;RSQ=0.9853;ERATE=0.0004;THETA=0.0002;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150274656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9388;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150274690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5771;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0003;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 150274780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0031;AVGPOST=0.9948;RSQ=0.2920;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150275189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0174;AVGPOST=0.9938;RSQ=0.8647;ERATE=0.0007;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150275289 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.734;LDAF=0.0063;AVGPOST=0.9956;RSQ=0.6872;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150275311 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4264;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150275425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4815;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150275481 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150275525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9869;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150275644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150275653 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7129;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150275825 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4684;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150275866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.4973;AVGPOST=0.9741;RSQ=0.9666;ERATE=0.0039;THETA=0.0006;AC=1091;AN=2184 GT:DS:GL:BD 0.49954212 0 1 150275918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7684;ERATE=0.0004;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150275936 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4759;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150275953 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150276019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.975;LDAF=0.8592;AVGPOST=0.9841;RSQ=0.9613;ERATE=0.0016;THETA=0.0007;AC=1880;AN=2184 GT:DS:GL:BD 0.86080587 1 1 150276041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9989;RSQ=0.9611;ERATE=0.0003;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150276110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.8102;ERATE=0.0004;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150276148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.4850;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150276155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4863;AVGPOST=0.9902;RSQ=0.9869;ERATE=0.0006;THETA=0.0007;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 150276207 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9821;ERATE=0.0003;THETA=0.0056;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150276237 . GA G 139 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150276332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5706;ERATE=0.0008;THETA=0.0069;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150276443 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0182;AVGPOST=0.9988;RSQ=0.9685;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150276564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150276597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.688;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7294;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150276605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7732;ERATE=0.0008;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150276617 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.8580;AVGPOST=0.9864;RSQ=0.9653;ERATE=0.0008;THETA=0.0039;AC=1873;AN=2184 GT:DS:GL:BD 0.85760075 1 1 150276663 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8922;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150276751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5442;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150276763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8843;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150276841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150276849 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9821;ERATE=0.0004;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150276851 rs34227962 AT A 680 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0084;AVGPOST=0.9975;RSQ=0.8875;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150277004 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5328;ERATE=0.0004;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150277062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9412;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150277150 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9384;ERATE=0.0003;THETA=0.0020;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150277263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9639;ERATE=0.0005;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150277378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.785;LDAF=0.0248;AVGPOST=0.9900;RSQ=0.8280;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150277435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7496;ERATE=0.0005;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150277436 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5292;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150277579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0096;AVGPOST=0.9991;RSQ=0.9708;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150277878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150277911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150278089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7762;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150278110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8371;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150278144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150278189 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8537;AVGPOST=0.9988;RSQ=0.9968;ERATE=0.0004;THETA=0.0014;AC=1865;AN=2184 GT:DS:GL:BD 0.85393775 1 1 150278221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0393;AVGPOST=0.9976;RSQ=0.9735;ERATE=0.0005;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 150278226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9144;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150278505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150278517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8680;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150278828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150278981 . CG C 33 PASS INDEL;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4595;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150278988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150279116 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150279193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150279194 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150279203 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0130;AVGPOST=0.9989;RSQ=0.9639;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150279256 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279296 . CA C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4634;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279317 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9377;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150279359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279388 . T TG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.4890;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150279446 . AG A 151 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6618;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150279527 . T TA 255 PASS INDEL;BAVGPOST=0.998;BRSQ=0.743;LDAF=0.0054;AVGPOST=0.9951;RSQ=0.6299;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150279552 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0258;AVGPOST=0.9993;RSQ=0.9875;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150279576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279641 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5047;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0023;AVGPOST=0.9964;RSQ=0.4922;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150279658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5181;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279735 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0120;AVGPOST=0.9960;RSQ=0.8780;ERATE=0.0003;THETA=0.0014;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150279911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150279931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5953;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150279956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150280165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0210;AVGPOST=0.9992;RSQ=0.9847;ERATE=0.0004;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150280172 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.5195;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150280186 . TCTCA T 261 PASS INDEL;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7683;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150280456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2748;AVGPOST=0.9818;RSQ=0.9682;ERATE=0.0015;THETA=0.0005;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 150280616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.922;LDAF=0.0336;AVGPOST=0.9957;RSQ=0.9526;ERATE=0.0005;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 150280620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1783;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 150280768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9464;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150280808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150280845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0322;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150280916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7230;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150281086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8950;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150281087 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9731;ERATE=0.0004;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150281134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150281217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6512;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6540;ERATE=0.0010;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150281243 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6677;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150281320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3040;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 150281569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7527;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150281830 . A AT 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150281987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7142;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150282042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9597;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150282131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3017;AVGPOST=0.9946;RSQ=0.9913;ERATE=0.0008;THETA=0.0004;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 150282308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7464;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150282404 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150282408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7183;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150282464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0338;AVGPOST=0.9991;RSQ=0.9894;ERATE=0.0005;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 150282632 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0035;AVGPOST=0.9979;RSQ=0.7749;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150282776 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9863;ERATE=0.0003;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150283041 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150283191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0649;AVGPOST=0.9994;RSQ=0.9957;ERATE=0.0003;THETA=0.0006;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 150283244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0212;AVGPOST=0.9984;RSQ=0.9741;ERATE=0.0003;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150283245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7139;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150283280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.1466;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 150283351 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150283393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150283405 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150283656 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6131;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150283678 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9364;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150283692 . C CT 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.6073;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150283732 . AAG A 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150283749 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0017;AVGPOST=0.9995;RSQ=0.8949;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150283843 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5164;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150283878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0655;AVGPOST=0.9992;RSQ=0.9941;ERATE=0.0004;THETA=0.0008;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 150283913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5607;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150283924 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0074;AVGPOST=0.9991;RSQ=0.9458;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150284056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4403;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0007;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 150284085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9152;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150284178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150284209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150284397 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5055;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150284404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0180;AVGPOST=0.9976;RSQ=0.9444;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150284638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5864;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150284639 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3245;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 150284717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5424;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150285122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6546;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150285299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1740;AVGPOST=0.9968;RSQ=0.9919;ERATE=0.0008;THETA=0.0005;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 150285429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7961;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150285487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150285560 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150285572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150285573 . TG T 5526 PASS INDEL;BAVGPOST=0.920;BRSQ=0.867;LDAF=0.3564;AVGPOST=0.9600;RSQ=0.9366;ERATE=0.0010;THETA=0.0004;AC=799;AN=2184 GT:DS:GL:BD 0.36584249 0 1 150285723 rs67634067 GC G 37916 PASS INDEL;BAVGPOST=0.984;BRSQ=0.990;LDAF=0.3833;AVGPOST=0.9928;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 150285724 . CA C 1320 PASS INDEL;BAVGPOST=0.892;BRSQ=0.808;LDAF=0.3163;AVGPOST=0.9129;RSQ=0.8597;ERATE=0.0029;THETA=0.0009;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 150285726 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9763;ERATE=0.0004;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150285756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8755;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150285820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150285835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0796;AVGPOST=0.9948;RSQ=0.9760;ERATE=0.0003;THETA=0.0006;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 150285969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150286305 . CA C 16 PASS INDEL;BAVGPOST=0.998;BRSQ=0.669;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6793;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150286349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9091;AVGPOST=0.9994;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 150286408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150286432 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8742;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=1909;AN=2184 GT:DS:GL:BD 0.87408423 1 1 150286449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9090;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0002;THETA=0.0006;AC=1985;AN=2184 GT:DS:GL:BD 0.90888280 1 1 150286471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.714;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8414;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150286525 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.5458;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150286578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7765;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150286624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8508;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150286704 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.7964;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150286705 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150286737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9478;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150286887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8098;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150286889 . A AGT 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5112;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150287031 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0467;AVGPOST=0.9658;RSQ=0.7162;ERATE=0.0018;THETA=0.0028;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 150287178 rs56183929 A AAAAAAAAAAAAAATG 19623 PASS INDEL;BAVGPOST=0.748;BRSQ=0.301;LDAF=0.7412;AVGPOST=0.7179;RSQ=0.4062;ERATE=0.0270;THETA=0.0005;AC=1750;AN=2184 GT:DS:GL:BD 0.80128205 1 1 150287193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.470;LDAF=0.1558;AVGPOST=0.8143;RSQ=0.4415;ERATE=0.0161;THETA=0.0008;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150287195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0336;AVGPOST=0.9904;RSQ=0.8854;ERATE=0.0006;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150287264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0039;AVGPOST=0.9944;RSQ=0.4291;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150287265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0020;AVGPOST=0.9975;RSQ=0.4806;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150287310 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0049;AVGPOST=0.9953;RSQ=0.6621;ERATE=0.0005;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150287337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5972;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150287372 . CTAT C 134 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7333;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150287413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8436;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150287419 . CA C 36 PASS INDEL;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0097;AVGPOST=0.9920;RSQ=0.6804;ERATE=0.0012;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150287445 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5240;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150287669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0065;AVGPOST=0.9972;RSQ=0.8183;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150287760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8697;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150287857 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.941;LDAF=0.8454;AVGPOST=0.9777;RSQ=0.9375;ERATE=0.0045;THETA=0.0004;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 150288009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.6728;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150288116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150288182 . T TA 2476 PASS INDEL;BAVGPOST=0.972;BRSQ=0.785;LDAF=0.0834;AVGPOST=0.9393;RSQ=0.7097;ERATE=0.0108;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 150288218 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.8003;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150288219 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3888;AVGPOST=0.9940;RSQ=0.9889;ERATE=0.0009;THETA=0.0003;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 150288227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5007;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150288289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6918;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150288329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2521;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 150288540 . T TA 2872 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0210;AVGPOST=0.9973;RSQ=0.9530;ERATE=0.0006;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150288577 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.5953;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150288610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.613;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5250;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150288643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8493;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150288701 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150288735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5681;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150288945 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150288964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7935;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150289035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150289238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150289239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0320;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0002;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150289305 rs66682739 T TA 24194 PASS INDEL;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4250;AVGPOST=0.9610;RSQ=0.9368;ERATE=0.0112;THETA=0.0003;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 150289373 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9886;ERATE=0.0002;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150289383 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3857;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=844;AN=2184 GT:DS:GL:BD 0.38644689 0 1 150289410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150289436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0210;AVGPOST=0.9989;RSQ=0.9787;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150289526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150289531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5363;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150289695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150289700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6651;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150289747 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0041;AVGPOST=0.9982;RSQ=0.8616;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150290011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0002;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150290026 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150290129 . AAC A 7336 PASS INDEL;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0672;AVGPOST=0.9994;RSQ=0.9961;ERATE=0.0002;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 150290201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0686;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 150290290 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150290309 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9996;RSQ=0.9851;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150290367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150290458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150290519 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8848;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150290595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0130;AVGPOST=0.9978;RSQ=0.9437;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150290624 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150290661 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150290709 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150290721 . T TC 402 PASS INDEL;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.6983;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150290739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7490;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150290850 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5918;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150290870 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6929;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150290919 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4663;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291157 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1456;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0003;THETA=0.0007;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 150291311 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5764;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6469;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150291479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9173;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150291528 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5809;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291713 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150291726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150291870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8222;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150291905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150292084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9831;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150292086 . A AC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150292091 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7059;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9384;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150292387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8388;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6074;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.9967;AVGPOST=0.9973;RSQ=0.6387;ERATE=0.0007;THETA=0.0008;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 150292735 . A AGG 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5870;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150292862 . TTTTA T 543 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0054;AVGPOST=0.9977;RSQ=0.8378;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150292901 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150292987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293014 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150293053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0074;AVGPOST=0.9935;RSQ=0.6441;ERATE=0.0013;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150293187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9521;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150293192 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5963;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293198 . A AC 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.7821;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150293210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293362 . G GC 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5429;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9878;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150293499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0239;AVGPOST=0.9993;RSQ=0.9873;ERATE=0.0003;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150293667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7367;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150293906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150294131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150294172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150294220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150294234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5495;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0010;THETA=0.0005;AC=1202;AN=2184 GT:DS:GL:BD 0.55036628 1 1 150294342 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6877;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150294353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150294358 . TG T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5785;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150294626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8977;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150294646 . AG A 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150294681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7456;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150294822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0880;AVGPOST=0.9989;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150294912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9561;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150295023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150295386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0505;AVGPOST=0.9983;RSQ=0.9876;ERATE=0.0003;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150295499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0055;AVGPOST=0.9978;RSQ=0.8347;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150295614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9790;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150295671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6222;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150295793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7499;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150295801 . TGA T 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3349;ERATE=0.0004;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150295916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150295917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0097;AVGPOST=0.9994;RSQ=0.9743;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150295919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150295946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150296003 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150296022 . G GA 46798 PASS INDEL;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.9536;AVGPOST=0.9965;RSQ=0.9687;ERATE=0.0007;THETA=0.0006;AC=2084;AN=2184 GT:DS:GL:BD 0.95421243 1 1 150296146 rs5775958 A AC 130962 PASS INDEL;BAVGPOST=0.996;BRSQ=0.968;LDAF=0.9533;AVGPOST=0.9968;RSQ=0.9709;ERATE=0.0013;THETA=0.0003;AC=2084;AN=2184 GT:DS:GL:BD 0.95421243 1 1 150296147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9989;RSQ=0.9806;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150296286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0305;AVGPOST=0.9993;RSQ=0.9892;ERATE=0.0004;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150296364 . A AT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0029;AVGPOST=0.9961;RSQ=0.5089;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150296380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150296384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8524;ERATE=0.0008;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150296388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0044;AVGPOST=0.9985;RSQ=0.8738;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150296395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0324;AVGPOST=0.9991;RSQ=0.9884;ERATE=0.0003;THETA=0.0008;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150296410 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8792;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150296521 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150296595 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6644;AVGPOST=0.9981;RSQ=0.9962;ERATE=0.0005;THETA=0.0002;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 150296793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6446;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150296887 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.5597;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150296917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0074;AVGPOST=0.9979;RSQ=0.8860;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150296946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0056;AVGPOST=0.9977;RSQ=0.8379;ERATE=0.0009;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150297006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6760;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150297060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0042;AVGPOST=0.9983;RSQ=0.8289;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150297219 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150297272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0254;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 150297448 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0307;AVGPOST=0.9986;RSQ=0.9799;ERATE=0.0004;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150297476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7003;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150297505 . GA G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.3658;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150297536 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7461;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150297618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6638;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0006;THETA=0.0004;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 150297620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150297645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8666;ERATE=0.0018;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150297888 rs35496560 A AT 31755 PASS INDEL;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2084;AVGPOST=0.9961;RSQ=0.9912;ERATE=0.0007;THETA=0.0008;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 150297927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5922;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298091 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7171;ERATE=0.0003;THETA=0.0050;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8648;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4872;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150298178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8885;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150298228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6213;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150298301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0189;AVGPOST=0.9992;RSQ=0.9828;ERATE=0.0004;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150298323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6134;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150298514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6512;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150298535 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8623;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150298559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150298696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9988;RSQ=0.9651;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150298710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150298754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9920;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150298872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9054;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150298990 rs71675126 CCTT C 5623 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0335;AVGPOST=0.9959;RSQ=0.9587;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 150298992 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5120;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150299009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150299074 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8750;ERATE=0.0005;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150299197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8851;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150299346 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3868;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150299477 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150299529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8989;ERATE=0.0006;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150299848 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.9554;AVGPOST=0.9969;RSQ=0.9729;ERATE=0.0004;THETA=0.0006;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 150299928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150300001 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150300072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6649;AVGPOST=0.9923;RSQ=0.9876;ERATE=0.0016;THETA=0.0004;AC=1449;AN=2184 GT:DS:GL:BD 0.66346157 1 1 150300161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1845;AVGPOST=0.9981;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=403;AN=2184 GT:DS:GL:BD 0.18452381 0 1 150300270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150300286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150300309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150300377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150300453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8321;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150300540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0028;AVGPOST=0.9957;RSQ=0.4918;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150300550 . AC A 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6236;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150300584 . A AAAAAC 663 PASS INDEL;BAVGPOST=0.996;BRSQ=0.684;LDAF=0.0055;AVGPOST=0.9976;RSQ=0.8228;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150300668 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0090;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0002;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150300686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150300714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5895;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150300795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7851;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150300819 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6863;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150300820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150300840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150300996 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9995;RSQ=0.9913;ERATE=0.0003;THETA=0.0013;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150301036 . A AC 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150301096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8603;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150301132 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7265;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150301138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8158;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150301205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4359;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150301211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0165;AVGPOST=0.9993;RSQ=0.9828;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150301281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0002;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150301353 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8871;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150301397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9755;ERATE=0.0002;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150301445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150301447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150301471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150301543 . T TA 339 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4683;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150301557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8339;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150301665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4180;AVGPOST=0.9927;RSQ=0.9878;ERATE=0.0005;THETA=0.0005;AC=914;AN=2184 GT:DS:GL:BD 0.41849816 0 1 150301867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150301987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150302087 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150302128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0002;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150302135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0084;AVGPOST=0.9980;RSQ=0.9059;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150302143 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4719;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150302177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0150;AVGPOST=0.9861;RSQ=0.6512;ERATE=0.0021;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150302226 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.803;LDAF=0.0110;AVGPOST=0.9974;RSQ=0.8955;ERATE=0.0007;THETA=0.0022;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150302399 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150302409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0064;AVGPOST=0.9971;RSQ=0.8169;ERATE=0.0008;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150302515 rs72337519 C CAT 6179 PASS INDEL;BAVGPOST=0.987;BRSQ=0.953;LDAF=0.1259;AVGPOST=0.9929;RSQ=0.9797;ERATE=0.0006;THETA=0.0010;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 150302692 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0074;AVGPOST=0.9991;RSQ=0.9499;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150302766 rs35988059 T TAAAG 17310 PASS INDEL;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1212;AVGPOST=0.9967;RSQ=0.9892;ERATE=0.0005;THETA=0.0006;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 150302825 . A AAG 19 PASS INDEL;BAVGPOST=0.995;BRSQ=0.636;LDAF=0.0064;AVGPOST=0.9962;RSQ=0.7526;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150302826 . A AGAAC 23762 PASS INDEL;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1224;AVGPOST=0.9973;RSQ=0.9917;ERATE=0.0003;THETA=0.0007;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 150302828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150302856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0073;AVGPOST=0.9984;RSQ=0.9103;ERATE=0.0003;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150302875 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8481;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150302957 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150303089 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150303099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150303129 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0002;THETA=0.0019;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150303134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0932;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=204;AN=2184 GT:DS:GL:BD 0.09340660 0 1 150303377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150303409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0263;AVGPOST=0.9986;RSQ=0.9793;ERATE=0.0003;THETA=0.0013;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 150303485 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5292;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150303626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0002;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150303672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0304;AVGPOST=0.9991;RSQ=0.9858;ERATE=0.0003;THETA=0.0018;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150303730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.671;LDAF=0.0148;AVGPOST=0.9929;RSQ=0.8046;ERATE=0.0008;THETA=0.0010;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150303737 . C CA 53 PASS INDEL;BAVGPOST=0.991;BRSQ=0.496;LDAF=0.0225;AVGPOST=0.9720;RSQ=0.4978;ERATE=0.0073;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150303854 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1305;AVGPOST=0.9993;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 150303912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1004;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0002;THETA=0.0007;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 150304091 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9061;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150304207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8919;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150304209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8837;ERATE=0.0002;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150304215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0093;AVGPOST=0.9991;RSQ=0.9609;ERATE=0.0002;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150304239 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5805;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150304319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150304453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4944;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150304574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0035;AVGPOST=0.9958;RSQ=0.5929;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150304691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150304838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8748;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150304895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8314;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150304896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0598;AVGPOST=0.9960;RSQ=0.9759;ERATE=0.0003;THETA=0.0024;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 150304972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0312;AVGPOST=0.9978;RSQ=0.9754;ERATE=0.0002;THETA=0.0012;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 150304990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0048;AVGPOST=0.9978;RSQ=0.8117;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150304992 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5892;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150305082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9115;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150305162 . TA T 58 PASS INDEL;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0039;AVGPOST=0.9954;RSQ=0.4896;ERATE=0.0008;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150305290 . T TTG 342 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9976;RSQ=0.8736;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150305342 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8501;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150305343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150305487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9977;RSQ=0.8824;ERATE=0.0007;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150305537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.2731;AVGPOST=0.9980;RSQ=0.9959;ERATE=0.0004;THETA=0.0007;AC=597;AN=2184 GT:DS:GL:BD 0.27335164 0 1 150305681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.953;LDAF=0.0891;AVGPOST=0.9872;RSQ=0.9381;ERATE=0.0006;THETA=0.0007;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 150305925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7043;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150305986 . ACT A 243 PASS INDEL;BAVGPOST=0.988;BRSQ=0.552;LDAF=0.0173;AVGPOST=0.9806;RSQ=0.5698;ERATE=0.0031;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150306143 . G GT 11 PASS INDEL;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0036;AVGPOST=0.9966;RSQ=0.6264;ERATE=0.0009;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150306158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150306410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7343;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150306442 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150306515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3526;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150306600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8275;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150306605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.782;LDAF=0.0083;AVGPOST=0.9969;RSQ=0.8538;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150306765 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5288;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150306792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0315;AVGPOST=0.9975;RSQ=0.9676;ERATE=0.0004;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 150306804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0205;AVGPOST=0.9991;RSQ=0.9860;ERATE=0.0003;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150306806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9566;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150306849 . C CCATTT 563 PASS INDEL;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7373;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150306947 . CA C 213 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8426;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150307096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150307209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0037;AVGPOST=0.9993;RSQ=0.9259;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150307407 . TTAAA T 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150307462 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8392;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150307639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150307689 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9996;RSQ=0.9901;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150307736 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150307777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0126;AVGPOST=0.9984;RSQ=0.9547;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150307796 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0230;AVGPOST=0.9991;RSQ=0.9857;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150307985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150307992 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5465;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150307997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150308051 . TC T 602 PASS INDEL;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0063;AVGPOST=0.9980;RSQ=0.8613;ERATE=0.0004;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150308059 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5958;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150308243 . G GA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5933;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150308294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7895;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150308295 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150308320 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150308384 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150308401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150308474 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0623;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 150308519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8979;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150308753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0122;AVGPOST=0.9993;RSQ=0.9780;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150308807 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9596;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150308809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0127;AVGPOST=0.9987;RSQ=0.9617;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150308832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150308846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0128;AVGPOST=0.9988;RSQ=0.9664;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150308862 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7413;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150308913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8723;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150308951 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150308993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9658;ERATE=0.0003;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150309173 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0245;AVGPOST=0.9976;RSQ=0.9638;ERATE=0.0003;THETA=0.0012;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 150309355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2876;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 150309520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0081;AVGPOST=0.9983;RSQ=0.9167;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150309617 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150309621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2878;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0003;THETA=0.0011;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 150309670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150309698 . GA G 142 PASS INDEL;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4763;ERATE=0.0010;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150309834 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0168;AVGPOST=0.9989;RSQ=0.9738;ERATE=0.0004;THETA=0.0142;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150309911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9623;ERATE=0.0003;THETA=0.0017;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150309968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0071;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150310008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8564;ERATE=0.0003;THETA=0.0091;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150310281 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9295;ERATE=0.0003;THETA=0.0123;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150310463 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8420;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150310545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9600;ERATE=0.0005;THETA=0.0027;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150310599 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150310787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5416;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150310791 . TCA T 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4999;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150310802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5417;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150310858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9690;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150310885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5515;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150310893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.907;LDAF=0.0074;AVGPOST=0.9968;RSQ=0.8467;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150310945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150310983 rs61690520 CATA C 1033 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0071;AVGPOST=0.9956;RSQ=0.7682;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150311133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4996;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150311177 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6900;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150311256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.539;LDAF=0.0051;AVGPOST=0.9939;RSQ=0.5572;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150311294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.8959;ERATE=0.0004;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150311377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5750;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150311414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1067;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 150311669 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6140;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150311824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150311830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0091;AVGPOST=0.9976;RSQ=0.9108;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150311867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0898;AVGPOST=0.9984;RSQ=0.9934;ERATE=0.0003;THETA=0.0002;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 150311873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150311891 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150312031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.829;LDAF=0.0085;AVGPOST=0.9933;RSQ=0.7024;ERATE=0.0009;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150312254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6528;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150312308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9391;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150312309 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7727;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150312406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7516;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150312643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2876;AVGPOST=0.9940;RSQ=0.9900;ERATE=0.0004;THETA=0.0004;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 150312660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0002;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150312812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7277;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150312937 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.7816;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150312961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3050;AVGPOST=0.9952;RSQ=0.9911;ERATE=0.0007;THETA=0.0004;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 150313001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0118;AVGPOST=0.9997;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150313138 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150313201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0123;AVGPOST=0.9976;RSQ=0.9314;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150313254 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7498;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150313449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0960;AVGPOST=0.9970;RSQ=0.9855;ERATE=0.0006;THETA=0.0005;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 150313485 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8495;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150313717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6086;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150313779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6158;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150313786 . A AC 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5990;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150313895 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8384;ERATE=0.0002;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150314077 . G GGA 1229 PASS INDEL;BAVGPOST=0.982;BRSQ=0.899;LDAF=0.0980;AVGPOST=0.9908;RSQ=0.9600;ERATE=0.0004;THETA=0.0003;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 150314105 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150314119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5398;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9896;ERATE=0.0003;THETA=0.0001;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150314242 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8622;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150314278 . T TG 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314303 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314458 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150314463 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150314464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5169;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150314546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6428;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314574 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314587 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8903;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150314659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6869;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150314676 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0005;AVGPOST=0.9989;RSQ=0.2666;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150314691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150314907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0002;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150314955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150314978 . TC T 37 PASS INDEL;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5829;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150315368 . TTAACAAAC T 2284 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9669;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150315513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0041;AVGPOST=0.9959;RSQ=0.6053;ERATE=0.0008;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150315585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150315601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9449;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150315672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8764;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150315706 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8825;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150315717 . GA G 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6918;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150315886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8721;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150315955 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150315956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5152;AVGPOST=0.9959;RSQ=0.9932;ERATE=0.0008;THETA=0.0006;AC=1124;AN=2184 GT:DS:GL:BD 0.51465201 1 1 150316319 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.815;LDAF=0.0137;AVGPOST=0.9947;RSQ=0.8406;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150316323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.537;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.4751;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150316392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.774;LDAF=0.0360;AVGPOST=0.9856;RSQ=0.8343;ERATE=0.0003;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150316421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.5661;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150316603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8674;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150316772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150316831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5807;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150316951 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7945;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150316962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8799;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150316993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8225;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150317202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6215;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150317245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0141;AVGPOST=0.9973;RSQ=0.9136;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150317246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3277;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 150317544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5171;AVGPOST=0.9939;RSQ=0.9905;ERATE=0.0017;THETA=0.0006;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 150317646 rs34067987 C CT 20526 PASS INDEL;BAVGPOST=0.989;BRSQ=0.978;LDAF=0.3320;AVGPOST=0.9781;RSQ=0.9628;ERATE=0.0044;THETA=0.0006;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 150317654 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0415;AVGPOST=0.9986;RSQ=0.9835;ERATE=0.0005;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 150317904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6169;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150318094 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150318098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5894;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150318211 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5680;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150318531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0035;AVGPOST=0.9968;RSQ=0.6369;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150318583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.5230;AVGPOST=0.9962;RSQ=0.9941;ERATE=0.0007;THETA=0.0005;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 150318849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150319037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150319217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150319221 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5113;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=1117;AN=2184 GT:DS:GL:BD 0.51144689 1 1 150319242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3213;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 150319279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150319589 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150319602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150319698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150319757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5185;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0002;THETA=0.0006;AC=1133;AN=2184 GT:DS:GL:BD 0.51877290 1 1 150319785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150319827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150319847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5179;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150320012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8898;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150320192 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150320261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0105;AVGPOST=0.9984;RSQ=0.9421;ERATE=0.0002;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150320262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9262;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150320388 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1631;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 150320515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0055;AVGPOST=0.9993;RSQ=0.9490;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150320523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5182;AVGPOST=0.9975;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=1133;AN=2184 GT:DS:GL:BD 0.51877290 1 1 150320525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0047;AVGPOST=0.9994;RSQ=0.9368;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150320544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9333;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150320621 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2091;AVGPOST=0.9958;RSQ=0.9914;ERATE=0.0003;THETA=0.0008;AC=453;AN=2184 GT:DS:GL:BD 0.20741758 0 1 150320652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6827;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150320698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150320788 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8690;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150320801 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0;LDAF=0.9832;AVGPOST=0.9803;RSQ=0.5574;ERATE=0.0015;THETA=0.0008;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 150320954 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1318;AVGPOST=0.9957;RSQ=0.9843;ERATE=0.0006;THETA=0.0011;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 150321057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.567;LDAF=0.0031;AVGPOST=0.9977;RSQ=0.6821;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150321077 . T TG 1319 PASS INDEL;BAVGPOST=0.973;BRSQ=0.795;LDAF=0.0622;AVGPOST=0.9805;RSQ=0.8837;ERATE=0.0010;THETA=0.0056;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 150321114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0069;AVGPOST=0.9974;RSQ=0.8577;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150321198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0796;AVGPOST=0.9977;RSQ=0.9894;ERATE=0.0004;THETA=0.0011;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 150321347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0791;AVGPOST=0.9984;RSQ=0.9915;ERATE=0.0005;THETA=0.0010;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 150321357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1394;AVGPOST=0.9975;RSQ=0.9920;ERATE=0.0003;THETA=0.0008;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 150321495 . TCC T 1254 PASS INDEL;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8858;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150321660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6694;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150321662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0003;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150321877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8081;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150321903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0056;AVGPOST=0.9981;RSQ=0.8614;ERATE=0.0004;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150322148 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150322174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0046;AVGPOST=0.9983;RSQ=0.8622;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150322236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5049;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150322496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4026;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150322523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.655;LDAF=0.0060;AVGPOST=0.9967;RSQ=0.7504;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150322561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.602;LDAF=0.0075;AVGPOST=0.9940;RSQ=0.6729;ERATE=0.0009;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150322630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5909;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150322714 . T TTA 907 PASS INDEL;BAVGPOST=0.998;BRSQ=0.924;LDAF=0.0210;AVGPOST=0.9854;RSQ=0.7351;ERATE=0.0013;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150322781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4038;ERATE=0.0007;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150322899 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9392;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150322932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0779;AVGPOST=0.9979;RSQ=0.9873;ERATE=0.0006;THETA=0.0006;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 150322934 . ATAT A 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4113;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150323168 . GTAA G 2317 PASS INDEL;BAVGPOST=0.992;BRSQ=0.952;LDAF=0.0717;AVGPOST=0.9954;RSQ=0.9768;ERATE=0.0004;THETA=0.0007;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 150323214 . TAATA T 11328 PASS INDEL;BAVGPOST=0.993;BRSQ=0.952;LDAF=0.0709;AVGPOST=0.9954;RSQ=0.9766;ERATE=0.0004;THETA=0.0007;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 150323215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8344;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150323273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8077;AVGPOST=0.9963;RSQ=0.9931;ERATE=0.0005;THETA=0.0034;AC=1762;AN=2184 GT:DS:GL:BD 0.80677658 1 1 150323371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8621;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150323474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7675;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150323525 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3707;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150323540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5806;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150323550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150323815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5250;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150323937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0128;AVGPOST=0.9964;RSQ=0.8789;ERATE=0.0005;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150324200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5025;AVGPOST=0.9951;RSQ=0.9927;ERATE=0.0004;THETA=0.0016;AC=1096;AN=2184 GT:DS:GL:BD 0.50183153 1 1 150324346 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4932;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150324391 . GAGAC G 2077 PASS INDEL;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0324;AVGPOST=0.9986;RSQ=0.9818;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150324395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0322;AVGPOST=0.9987;RSQ=0.9830;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150324412 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.877;LDAF=0.1531;AVGPOST=0.9684;RSQ=0.9165;ERATE=0.0017;THETA=0.0005;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 150324414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0745;AVGPOST=0.9979;RSQ=0.9879;ERATE=0.0005;THETA=0.0012;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 150324417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0097;AVGPOST=0.9976;RSQ=0.9034;ERATE=0.0005;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150324536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.359;LDAF=0.0143;AVGPOST=0.9854;RSQ=0.5904;ERATE=0.0011;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150324552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0139;AVGPOST=0.9906;RSQ=0.7456;ERATE=0.0010;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150324613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6215;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150324704 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5822;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150324733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.9187;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150324776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0077;AVGPOST=0.9988;RSQ=0.9406;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150324874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8880;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0014;AC=1939;AN=2184 GT:DS:GL:BD 0.88782054 1 1 150324955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150324963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5875;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150325120 rs34818210 T TTG 15363 PASS INDEL;BAVGPOST=0.928;BRSQ=0.825;LDAF=0.2514;AVGPOST=0.9355;RSQ=0.8743;ERATE=0.0054;THETA=0.0007;AC=541;AN=2184 GT:DS:GL:BD 0.24771062 0 1 150325202 rs3066510 T TG 5697 PASS INDEL;BAVGPOST=0.925;BRSQ=0.800;LDAF=0.2384;AVGPOST=0.9091;RSQ=0.8074;ERATE=0.0155;THETA=0.0008;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 150325217 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.950;LDAF=0.0835;AVGPOST=0.9832;RSQ=0.9237;ERATE=0.0041;THETA=0.0009;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 150325218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.779;LDAF=0.0057;AVGPOST=0.9980;RSQ=0.8739;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150325328 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.699;LDAF=0.9941;AVGPOST=0.9911;RSQ=0.3871;ERATE=0.0018;THETA=0.0007;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 150325390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150325400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.816;LDAF=0.0155;AVGPOST=0.9888;RSQ=0.7208;ERATE=0.0006;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150325401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.817;LDAF=0.0142;AVGPOST=0.9898;RSQ=0.7263;ERATE=0.0005;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150325407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150325461 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150325648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150325781 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9208;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150325916 . AC A 264 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7550;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150325921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9052;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150325940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8011;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150325982 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9530;ERATE=0.0005;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150326047 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9819;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150326170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0374;AVGPOST=0.9989;RSQ=0.9876;ERATE=0.0004;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150326247 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150326265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6155;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150326293 . AAAAC A 831 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0074;AVGPOST=0.9990;RSQ=0.9376;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150326314 . AC A 33 PASS INDEL;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0091;AVGPOST=0.9952;RSQ=0.8105;ERATE=0.0006;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150326321 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9757;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150326349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0096;AVGPOST=0.9984;RSQ=0.9358;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150326371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150326376 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8915;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150326382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8145;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150326501 . C CT 21 PASS INDEL;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.4723;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150326510 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6304;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150326591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8270;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150326714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8891;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150326814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9163;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150326821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150326877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1077;AVGPOST=0.9976;RSQ=0.9902;ERATE=0.0004;THETA=0.0003;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150327071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.622;LDAF=0.0077;AVGPOST=0.9962;RSQ=0.8242;ERATE=0.0005;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150327155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.499;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4120;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150327188 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9333;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150327191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150327243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9812;ERATE=0.0003;THETA=0.0001;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150327321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150327388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0031;AVGPOST=0.9978;RSQ=0.7440;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150327443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0105;AVGPOST=0.9960;RSQ=0.8576;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150327479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5902;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150327624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8219;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150327630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0121;AVGPOST=0.9980;RSQ=0.9523;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150327637 . ATGCT A 244 PASS INDEL;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150327660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9641;ERATE=0.0005;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150327771 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150327823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150327825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9793;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150327827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8039;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150327857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150327861 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150327936 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3371;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0006;THETA=0.0004;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 150328124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.7111;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150328146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3362;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 150328189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150328201 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.8040;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150328241 . TGAC T 469 PASS INDEL;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9479;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150328326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0070;AVGPOST=0.9984;RSQ=0.9157;ERATE=0.0007;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150328354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8868;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150328355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9078;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150328401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9817;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150328423 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6368;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150328502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7834;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150328509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5009;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150328594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150328894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9340;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150328907 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150329001 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9707;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150329087 . ATCC A 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5547;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150329101 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4921;AVGPOST=0.9981;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 150329147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8211;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150329188 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9747;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150329215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0257;AVGPOST=0.9975;RSQ=0.9559;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150329332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7136;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150329358 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150329388 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1946;AVGPOST=0.9973;RSQ=0.9935;ERATE=0.0003;THETA=0.0002;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 150329420 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150329455 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5937;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150329843 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7811;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150329877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150329894 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7408;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150329919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7778;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150329948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2981;AVGPOST=0.9967;RSQ=0.9941;ERATE=0.0005;THETA=0.0002;AC=654;AN=2184 GT:DS:GL:BD 0.29945055 0 1 150329997 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8028;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150330011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7788;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150330098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9629;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150330132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7999;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150330137 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150330153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4931;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 150330219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7586;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150330236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8891;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150330237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150330409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7144;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150330410 . CAA C 426 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.9065;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150330416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4927;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150330450 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9549;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150330476 . AT A 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4039;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150330694 . T TA 275 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8803;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150330766 . C CATAG 41 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6457;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150330829 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0045;AVGPOST=0.9977;RSQ=0.8115;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150330881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.9934;AVGPOST=0.9986;RSQ=0.9294;ERATE=0.0003;THETA=0.0003;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 150331132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6029;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150331156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150331275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6337;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150331311 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150331319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9542;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150331426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6737;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150331429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5966;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150331472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0028;AVGPOST=0.9968;RSQ=0.5908;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150331584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150331585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150331590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150331656 . T TG 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6163;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150331679 . G GT 1574 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0096;AVGPOST=0.9986;RSQ=0.9344;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150331694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3470;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 150331892 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0789;AVGPOST=0.9994;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 150331989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0973;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 150332118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0874;AVGPOST=0.9976;RSQ=0.9888;ERATE=0.0004;THETA=0.0003;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 150332165 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0345;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0004;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 150332211 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150332360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6602;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150332369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7958;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0002;AC=1738;AN=2184 GT:DS:GL:BD 0.79578757 1 1 150332371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150332626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4600;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150332736 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7944;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0004;THETA=0.0004;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 150332770 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9170;AVGPOST=0.9988;RSQ=0.9932;ERATE=0.0004;THETA=0.0003;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 150332809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0875;AVGPOST=0.9990;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150332931 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8959;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150332969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.828;LDAF=0.0085;AVGPOST=0.9936;RSQ=0.7304;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150333013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2419;AVGPOST=0.9906;RSQ=0.9820;ERATE=0.0010;THETA=0.0002;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 150333035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0044;AVGPOST=0.9975;RSQ=0.7744;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150333101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.740;LDAF=0.0073;AVGPOST=0.9964;RSQ=0.8124;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150333106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0502;AVGPOST=0.9976;RSQ=0.9789;ERATE=0.0006;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150333108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0058;AVGPOST=0.9964;RSQ=0.7773;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150333109 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8504;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150333113 . A AC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6199;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150333285 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5149;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150333402 . G GT 230 PASS INDEL;BAVGPOST=0.969;BRSQ=0.478;LDAF=0.0596;AVGPOST=0.9238;RSQ=0.4402;ERATE=0.0177;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 150333442 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7364;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150333523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0065;AVGPOST=0.9980;RSQ=0.8654;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150333715 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1485;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0005;THETA=0.0004;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 150333917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4978;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150334106 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150334157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4253;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150334231 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.3478;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0005;THETA=0.0009;AC=761;AN=2184 GT:DS:GL:BD 0.34844321 0 1 150334242 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8023;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 150334464 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6123;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150334754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.481;LDAF=0.0091;AVGPOST=0.9933;RSQ=0.7030;ERATE=0.0012;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150334823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.949;LDAF=0.0353;AVGPOST=0.9978;RSQ=0.9756;ERATE=0.0005;THETA=0.0002;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 150334828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.974;LDAF=0.8083;AVGPOST=0.9730;RSQ=0.9312;ERATE=0.0024;THETA=0.0009;AC=1776;AN=2184 GT:DS:GL:BD 0.81318682 1 1 150334874 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.7595;AVGPOST=0.9223;RSQ=0.8394;ERATE=0.0071;THETA=0.0003;AC=1694;AN=2184 GT:DS:GL:BD 0.77564102 1 1 150334884 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.913;LDAF=0.0702;AVGPOST=0.9839;RSQ=0.9051;ERATE=0.0013;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 150334905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0496;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150335091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.663;LDAF=0.0091;AVGPOST=0.9949;RSQ=0.7600;ERATE=0.0006;THETA=0.0029;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150335109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.729;LDAF=0.0093;AVGPOST=0.9976;RSQ=0.9014;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150335258 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2514;AVGPOST=0.9814;RSQ=0.9651;ERATE=0.0013;THETA=0.0002;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 150335324 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0287;AVGPOST=0.9982;RSQ=0.9745;ERATE=0.0004;THETA=0.0024;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 150335480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4103;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150335533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0045;AVGPOST=0.9978;RSQ=0.7977;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150335534 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0034;AVGPOST=0.9952;RSQ=0.4741;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150335540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0893;AVGPOST=0.9969;RSQ=0.9854;ERATE=0.0005;THETA=0.0004;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 150335547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7874;ERATE=0.0004;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150335615 . A AT 11964 PASS INDEL;BAVGPOST=0.981;BRSQ=0.961;LDAF=0.3448;AVGPOST=0.9689;RSQ=0.9469;ERATE=0.0034;THETA=0.0003;AC=754;AN=2184 GT:DS:GL:BD 0.34523809 0 1 150335894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.971;LDAF=0.2488;AVGPOST=0.9941;RSQ=0.9871;ERATE=0.0007;THETA=0.0003;AC=543;AN=2184 GT:DS:GL:BD 0.24862637 0 1 150335924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7681;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150335994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9351;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150336048 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150336063 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9027;ERATE=0.0006;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150336202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.584;LDAF=0.0133;AVGPOST=0.9903;RSQ=0.7036;ERATE=0.0009;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150336320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7489;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150336413 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6897;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150336644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0093;AVGPOST=0.9992;RSQ=0.9617;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150336817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.3236;AVGPOST=0.9943;RSQ=0.9907;ERATE=0.0008;THETA=0.0004;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 150336856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150336859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9252;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150336897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9134;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150336955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4830;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150336975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5646;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150337011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9650;AVGPOST=0.9995;RSQ=0.9931;ERATE=0.0003;THETA=0.0007;AC=2108;AN=2184 GT:DS:GL:BD 0.96520144 1 1 150337031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7379;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150337076 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0691;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0003;THETA=0.0006;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 150337090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.939;LDAF=0.0540;AVGPOST=0.9937;RSQ=0.9507;ERATE=0.0006;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 150337150 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9995;RSQ=0.9849;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 150337308 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150337320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8239;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150337345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150337351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5533;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150337462 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150337486 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150337545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150337563 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150337567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0309;AVGPOST=0.9992;RSQ=0.9889;ERATE=0.0002;THETA=0.0015;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150337887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9547;AVGPOST=0.9992;RSQ=0.9912;ERATE=0.0004;THETA=0.0003;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 150337964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0152;AVGPOST=0.9994;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150338038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150338040 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150338196 rs71068873 TA T 86007 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.9800;AVGPOST=0.9982;RSQ=0.9635;ERATE=0.0004;THETA=0.0005;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 150338269 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8041;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150338373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6435;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150338682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150338787 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9550;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150338885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8592;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150338938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6563;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150338963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6329;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150339011 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.5292;ERATE=0.0002;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150339128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150339145 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150339193 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150339393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150339422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0193;AVGPOST=0.9974;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150339451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6612;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150339482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0419;AVGPOST=0.9989;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 150339526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0282;AVGPOST=0.9995;RSQ=0.9912;ERATE=0.0004;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150339532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8576;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150339588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0348;AVGPOST=0.9974;RSQ=0.9709;ERATE=0.0005;THETA=0.0006;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 150339716 . C CG 7042 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0691;AVGPOST=0.9981;RSQ=0.9870;ERATE=0.0004;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 150339721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0903;AVGPOST=0.9968;RSQ=0.9835;ERATE=0.0003;THETA=0.0008;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 150339729 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6579;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150339741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.819;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7839;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150339759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4882;AVGPOST=0.9947;RSQ=0.9914;ERATE=0.0008;THETA=0.0003;AC=1064;AN=2184 GT:DS:GL:BD 0.48717949 0 1 150340028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8055;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150340217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.5676;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150340306 . GAGTA G 3767 PASS INDEL;BAVGPOST=0.996;BRSQ=0.902;LDAF=0.0230;AVGPOST=0.9965;RSQ=0.9302;ERATE=0.0005;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150340343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9095;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150340392 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7828;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150340472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5174;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150340488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.601;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.6761;ERATE=0.0006;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150340635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0077;AVGPOST=0.9974;RSQ=0.8533;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150340957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0031;AVGPOST=0.9963;RSQ=0.5092;ERATE=0.0009;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150341030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0190;AVGPOST=0.9984;RSQ=0.9656;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 150341073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150341109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6964;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150341161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.7470;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150341213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7477;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150341427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7895;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150341500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8595;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150341519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5473;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=1194;AN=2184 GT:DS:GL:BD 0.54670328 1 1 150341621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150341630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6875;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150341676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7572;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150341762 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0392;AVGPOST=0.9979;RSQ=0.9791;ERATE=0.0004;THETA=0.0002;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 150341812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3136;AVGPOST=0.9965;RSQ=0.9935;ERATE=0.0005;THETA=0.0003;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 150341850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0083;AVGPOST=0.9945;RSQ=0.7348;ERATE=0.0008;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150342024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150342076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5464;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150342141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.4569;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150342203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5684;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150342274 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0051;AVGPOST=0.9951;RSQ=0.6391;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150342319 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4278;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150342330 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1060;AVGPOST=0.9975;RSQ=0.9904;ERATE=0.0004;THETA=0.0004;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 150342448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.892;LDAF=0.0165;AVGPOST=0.9955;RSQ=0.9017;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150342513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8385;ERATE=0.0011;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150342579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150342588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0083;AVGPOST=0.9975;RSQ=0.8857;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150342620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150342688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1400;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 150342727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6331;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150342746 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150342779 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0875;AVGPOST=0.9994;RSQ=0.9968;ERATE=0.0004;THETA=0.0001;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150342943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0526;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 150342963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0112;AVGPOST=0.9962;RSQ=0.8606;ERATE=0.0004;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150342989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150343061 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.8953;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150343110 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4876;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.980;LDAF=0.1142;AVGPOST=0.9936;RSQ=0.9765;ERATE=0.0004;THETA=0.0002;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 150343321 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150343332 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4676;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343420 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7761;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150343570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0034;AVGPOST=0.9964;RSQ=0.5970;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150343600 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7295;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150343645 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150343673 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343732 . C CA 4472 PASS INDEL;BAVGPOST=0.987;BRSQ=0.926;LDAF=0.0898;AVGPOST=0.9834;RSQ=0.9263;ERATE=0.0026;THETA=0.0003;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 150343785 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6983;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150343791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6279;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.9192;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150343863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5270;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150343979 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6419;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150344019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.965;LDAF=0.0882;AVGPOST=0.9964;RSQ=0.9830;ERATE=0.0007;THETA=0.0002;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 150344118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5489;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150344255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4708;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150344295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7099;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150344359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150344363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0875;AVGPOST=0.9988;RSQ=0.9935;ERATE=0.0006;THETA=0.0002;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150344435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0381;AVGPOST=0.9990;RSQ=0.9871;ERATE=0.0004;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 150344514 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.949;LDAF=0.0873;AVGPOST=0.9975;RSQ=0.9869;ERATE=0.0005;THETA=0.0005;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150344565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0543;AVGPOST=0.9983;RSQ=0.9877;ERATE=0.0003;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 150344659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0216;AVGPOST=0.9965;RSQ=0.9410;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150344706 . AAAG A 120 PASS INDEL;BAVGPOST=0.997;BRSQ=0.584;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7495;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150344722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.955;LDAF=0.3668;AVGPOST=0.9740;RSQ=0.9589;ERATE=0.0058;THETA=0.0003;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 150344753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150344887 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0123;AVGPOST=0.9979;RSQ=0.9287;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150345069 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9669;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150345087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6841;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150345095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8534;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150345103 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0228;AVGPOST=0.9964;RSQ=0.9465;ERATE=0.0004;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 150345135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7877;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150345151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0060;AVGPOST=0.9912;RSQ=0.5634;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150345251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7068;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150345307 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.8952;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150345332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.3852;AVGPOST=0.9765;RSQ=0.9644;ERATE=0.0053;THETA=0.0003;AC=841;AN=2184 GT:DS:GL:BD 0.38507327 0 1 150345344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9989;RSQ=0.9728;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150345369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4751;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150345417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1394;AVGPOST=0.9961;RSQ=0.9874;ERATE=0.0004;THETA=0.0003;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150345618 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8320;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150345623 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.7313;ERATE=0.0007;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150345674 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0874;AVGPOST=0.9979;RSQ=0.9897;ERATE=0.0005;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 150345761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9460;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150345830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9968;RSQ=0.8732;ERATE=0.0005;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150345918 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.969;LDAF=0.0888;AVGPOST=0.9956;RSQ=0.9786;ERATE=0.0004;THETA=0.0003;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 150345977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7159;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150345990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5351;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150345992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4243;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150346011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0283;AVGPOST=0.9959;RSQ=0.9411;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150346012 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0130;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150346091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6625;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150346155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4298;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0007;THETA=0.0005;AC=938;AN=2184 GT:DS:GL:BD 0.42948717 0 1 150346355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0236;AVGPOST=0.9985;RSQ=0.9739;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150346363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8627;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150346388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7515;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150346408 . AAC A 92 PASS INDEL;BAVGPOST=0.993;BRSQ=0.639;LDAF=0.0198;AVGPOST=0.9763;RSQ=0.5296;ERATE=0.0053;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150346432 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0138;AVGPOST=0.9969;RSQ=0.9113;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150346454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0073;AVGPOST=0.9967;RSQ=0.8263;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150346653 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8128;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150346702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0130;AVGPOST=0.9993;RSQ=0.9761;ERATE=0.0005;THETA=0.0001;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150346734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0233;AVGPOST=0.9990;RSQ=0.9833;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150346791 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8855;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150346808 . GCAA G 54 PASS INDEL;BAVGPOST=0.994;BRSQ=0.713;LDAF=0.0186;AVGPOST=0.9787;RSQ=0.5332;ERATE=0.0055;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150346899 . C CAAA 12639 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0739;AVGPOST=0.9992;RSQ=0.9950;ERATE=0.0005;THETA=0.0003;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 150346906 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150347015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150347143 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0117;AVGPOST=0.9978;RSQ=0.9201;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150347363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4188;AVGPOST=0.9964;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 150347391 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8396;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150347518 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150347543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150347560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150347595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4928;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 150347659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6776;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150347744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150348069 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8436;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150348071 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3888;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150348195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.937;LDAF=0.0228;AVGPOST=0.9910;RSQ=0.8493;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 150348254 . TA T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4189;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150348298 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150348299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7465;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150348469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150348476 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4050;AVGPOST=0.9978;RSQ=0.9967;ERATE=0.0005;THETA=0.0029;AC=883;AN=2184 GT:DS:GL:BD 0.40430403 0 1 150348477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9974;RSQ=0.7445;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150348486 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7278;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150348526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8011;AVGPOST=0.9978;RSQ=0.9951;ERATE=0.0004;THETA=0.0005;AC=1747;AN=2184 GT:DS:GL:BD 0.79990840 1 1 150348728 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150348736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4722;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150348936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0733;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0007;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 150348957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150349083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0191;AVGPOST=0.9949;RSQ=0.8905;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150349466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5888;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150349605 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150349734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150349810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0231;AVGPOST=0.9994;RSQ=0.9900;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150349882 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4292;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0005;THETA=0.0007;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 150349925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8939;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150349944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9285;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150350005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0329;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 150350053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150350077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6097;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150350293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.4280;AVGPOST=0.9943;RSQ=0.9903;ERATE=0.0014;THETA=0.0036;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 150350447 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0732;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 150350609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150350698 . TCTCCTTA T 214 PASS INDEL;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150350727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150350772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1189;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 150350800 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1354;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0006;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 150350826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0341;AVGPOST=0.9994;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 150350897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150350939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8719;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150350955 . TTCCTGTGGTCA T 24870 PASS INDEL;BAVGPOST=0.983;BRSQ=0.928;LDAF=0.1387;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0005;THETA=0.0004;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 150351376 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150351571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1392;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 150351581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6579;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150351601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0048;AVGPOST=0.9949;RSQ=0.6067;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150351660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150351789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9050;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150351836 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0351;AVGPOST=0.9993;RSQ=0.9911;ERATE=0.0003;THETA=0.0009;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150351852 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9797;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150351868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1388;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 150351989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9998;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150352022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9022;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150352083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=0.9988;RSQ=0.9805;ERATE=0.0003;THETA=0.0017;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150352097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7924;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150352152 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6732;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150352170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150352293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8878;ERATE=0.0009;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150352354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9975;RSQ=0.4130;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150352458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150352465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2712;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 150352528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2666;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0007;AC=583;AN=2184 GT:DS:GL:BD 0.26694140 0 1 150352594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150352599 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8508;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150352611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9990;RSQ=0.9687;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150352638 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150352681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8651;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150352820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2693;AVGPOST=0.9941;RSQ=0.9901;ERATE=0.0007;THETA=0.0017;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 150352841 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6064;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150352867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0046;AVGPOST=0.9976;RSQ=0.8047;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150352998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150353035 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1388;AVGPOST=0.9981;RSQ=0.9933;ERATE=0.0004;THETA=0.0007;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150353113 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.871;LDAF=0.0206;AVGPOST=0.9957;RSQ=0.9212;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150353173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7843;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150353191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0260;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 150353204 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150353219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8071;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150353225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.841;LDAF=0.0111;AVGPOST=0.9987;RSQ=0.9536;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150353229 rs58550205 C CTG 20872 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1416;AVGPOST=0.9960;RSQ=0.9856;ERATE=0.0011;THETA=0.0012;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 150353330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1387;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0006;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150353377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5459;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150353384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150353444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1755;AVGPOST=0.9894;RSQ=0.9722;ERATE=0.0006;THETA=0.0008;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 150353543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7313;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150353558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1386;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0004;THETA=0.0013;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150353728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7044;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150353804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.808;LDAF=0.0346;AVGPOST=0.9920;RSQ=0.9039;ERATE=0.0008;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150353865 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0045;AVGPOST=0.9976;RSQ=0.8036;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150353933 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8215;ERATE=0.0005;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150353972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.696;LDAF=0.0073;AVGPOST=0.9950;RSQ=0.7308;ERATE=0.0006;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150354007 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5264;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150354047 . CTT C 832 PASS INDEL;BAVGPOST=0.995;BRSQ=0.813;LDAF=0.0119;AVGPOST=0.9928;RSQ=0.7851;ERATE=0.0006;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150354138 . ATATT A 312 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0043;AVGPOST=0.9955;RSQ=0.5729;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150354145 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0151;AVGPOST=0.9977;RSQ=0.9457;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 150354233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0275;AVGPOST=0.9989;RSQ=0.9808;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150354308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9802;ERATE=0.0003;THETA=0.0018;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150354379 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5348;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150354454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6258;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150354459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1386;AVGPOST=0.9981;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150354468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5168;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150354586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0074;AVGPOST=0.9979;RSQ=0.8807;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150354619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2702;AVGPOST=0.9845;RSQ=0.9748;ERATE=0.0031;THETA=0.0007;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 150354629 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1384;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 150354639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150354769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0270;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150354897 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.4540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150354979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9007;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150355070 . CT C 52 PASS INDEL;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150355143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150355345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9168;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150355401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 150355485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150355487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0185;AVGPOST=0.9962;RSQ=0.9196;ERATE=0.0006;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150355488 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3761;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150355501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0257;AVGPOST=0.9970;RSQ=0.9585;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150355602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0066;AVGPOST=0.9980;RSQ=0.8636;ERATE=0.0007;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150355612 rs72002019 CAAAAAAAAA C 906 PASS INDEL;BAVGPOST=0.887;BRSQ=0.376;LDAF=0.1513;AVGPOST=0.8101;RSQ=0.4310;ERATE=0.0201;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 150355624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8067;ERATE=0.0007;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150355730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0035;AVGPOST=0.9980;RSQ=0.7589;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150355766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0048;AVGPOST=0.9941;RSQ=0.5332;ERATE=0.0005;THETA=0.0048;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150356488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.7810;AVGPOST=0.9909;RSQ=0.9827;ERATE=0.0009;THETA=0.0042;AC=1706;AN=2184 GT:DS:GL:BD 0.78113556 1 1 150356531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0272;AVGPOST=0.9984;RSQ=0.9758;ERATE=0.0006;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 150356560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9987;RSQ=0.9291;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150356578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1062;AVGPOST=0.9971;RSQ=0.9872;ERATE=0.0005;THETA=0.0003;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 150356916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150356964 . GA G 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.5153;ERATE=0.0006;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150356997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4316;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357029 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357124 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9182;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150357193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3912;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0009;THETA=0.0009;AC=853;AN=2184 GT:DS:GL:BD 0.39056778 0 1 150357253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0272;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0005;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 150357276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5729;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6695;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357372 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0698;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150357434 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.8067;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150357701 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1376;AVGPOST=0.9901;RSQ=0.9666;ERATE=0.0005;THETA=0.0004;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 150357712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7095;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150357720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7848;AVGPOST=0.9984;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 150357731 . A AG 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6267;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150357743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5787;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150357855 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6270;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150358027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1057;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 150358135 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150358150 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150358155 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150358364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4979;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150358395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0091;AVGPOST=0.9988;RSQ=0.9488;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150358438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8952;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150358468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2500;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 150358493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2494;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 150358662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150358732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8876;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150358785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150358830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5556;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150358920 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8546;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150358946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8577;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150359016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.8196;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150359097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.620;LDAF=0.0067;AVGPOST=0.9930;RSQ=0.5954;ERATE=0.0013;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150359129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.7164;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150359153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150359320 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150359326 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7009;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150359360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150359408 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150359432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150359473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150359510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0123;AVGPOST=0.9996;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150359530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7834;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150359596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7409;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150359870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9180;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150359949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9262;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150359990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150360032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7325;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150360045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150360077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8678;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150360084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150360152 rs34210849 ATACT A 2837 PASS INDEL;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0125;AVGPOST=0.9991;RSQ=0.9718;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150360156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9213;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150360194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8443;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150360268 . T TG 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7313;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150360269 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150360409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8177;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150360414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150360523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150360582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150360602 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150360638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150360653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7731;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0004;THETA=0.0005;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 150360691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0934;AVGPOST=0.9991;RSQ=0.9949;ERATE=0.0005;THETA=0.0003;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 150360743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7731;AVGPOST=0.9996;RSQ=0.9992;ERATE=0.0004;THETA=0.0004;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 150360753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7733;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 150360840 rs67345195 GGTTTT G 105610 PASS INDEL;BAVGPOST=0.983;BRSQ=0.958;LDAF=0.7571;AVGPOST=0.9591;RSQ=0.9230;ERATE=0.0153;THETA=0.0005;AC=1672;AN=2184 GT:DS:GL:BD 0.76556778 1 1 150360903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9117;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150360963 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1061;AVGPOST=0.9982;RSQ=0.9919;ERATE=0.0004;THETA=0.0008;AC=231;AN=2184 GT:DS:GL:BD 0.10576923 0 1 150360990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8284;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150361256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150361267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8266;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150361366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9647;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150361395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6736;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150361412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9864;AVGPOST=0.9989;RSQ=0.9700;ERATE=0.0003;THETA=0.0004;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 150361452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0153;AVGPOST=0.9985;RSQ=0.9623;ERATE=0.0003;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150361524 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6347;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150361559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9795;ERATE=0.0003;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150361571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150361749 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150361759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150361823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6258;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150361847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150361859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9881;ERATE=0.0003;THETA=0.0029;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150361948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6905;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150361952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150362014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150362020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150362038 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0253;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0008;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150362088 . G GCA 1132 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0091;AVGPOST=0.9959;RSQ=0.7846;ERATE=0.0006;THETA=0.0015;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150362098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8601;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150362120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0352;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0018;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150362131 . GT G 408 PASS INDEL;BAVGPOST=0.995;BRSQ=0.765;LDAF=0.0169;AVGPOST=0.9965;RSQ=0.9186;ERATE=0.0005;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150362132 . GT G 759 PASS INDEL;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0162;AVGPOST=0.9985;RSQ=0.9615;ERATE=0.0005;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150362158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0040;AVGPOST=0.9971;RSQ=0.7319;ERATE=0.0020;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150362190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150362227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0483;AVGPOST=0.9993;RSQ=0.9930;ERATE=0.0004;THETA=0.0008;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 150362245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0038;AVGPOST=0.9973;RSQ=0.7007;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150362287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150362332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0003;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150362390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8731;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150362482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9784;ERATE=0.0004;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150362587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0039;AVGPOST=0.9962;RSQ=0.5949;ERATE=0.0005;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150362678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.9081;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150362889 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.890;LDAF=0.6723;AVGPOST=0.9050;RSQ=0.8508;ERATE=0.0128;THETA=0.0009;AC=1499;AN=2184 GT:DS:GL:BD 0.68635529 1 1 150362910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0359;AVGPOST=0.9985;RSQ=0.9817;ERATE=0.0004;THETA=0.0013;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 150362947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.875;LDAF=0.0272;AVGPOST=0.9951;RSQ=0.9177;ERATE=0.0011;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150362977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0499;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0013;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 150363040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.423;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5073;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150363106 . CAT C 1582 PASS INDEL;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0119;AVGPOST=0.9974;RSQ=0.8965;ERATE=0.0005;THETA=0.0012;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150363120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150363166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0320;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150363167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0665;AVGPOST=0.9991;RSQ=0.9949;ERATE=0.0003;THETA=0.0014;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 150363170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1020;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 150363243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8931;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150363368 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1103;AVGPOST=0.9981;RSQ=0.9928;ERATE=0.0005;THETA=0.0009;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150363460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150363579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150363601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1106;AVGPOST=0.9986;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 150363614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.1132;AVGPOST=0.9981;RSQ=0.9929;ERATE=0.0004;THETA=0.0006;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 150363630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150363636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.877;LDAF=0.0151;AVGPOST=0.9981;RSQ=0.9442;ERATE=0.0006;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150363668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0669;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 150363671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1099;AVGPOST=0.9947;RSQ=0.9812;ERATE=0.0009;THETA=0.0005;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 150363722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1069;AVGPOST=0.9970;RSQ=0.9890;ERATE=0.0003;THETA=0.0012;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150363739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150363759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0124;AVGPOST=0.9965;RSQ=0.8939;ERATE=0.0005;THETA=0.0010;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150363775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1087;AVGPOST=0.9972;RSQ=0.9893;ERATE=0.0005;THETA=0.0011;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 150363776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.1103;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0003;THETA=0.0009;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150363873 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8650;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150363935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150363971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1103;AVGPOST=0.9985;RSQ=0.9939;ERATE=0.0004;THETA=0.0005;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150364007 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1109;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0004;THETA=0.0009;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 150364018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364057 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5097;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1104;AVGPOST=0.9990;RSQ=0.9962;ERATE=0.0003;THETA=0.0013;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150364069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0184;AVGPOST=0.9990;RSQ=0.9774;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150364109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6112;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364119 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1105;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0004;THETA=0.0009;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150364281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9876;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 150364291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6083;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150364329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1771;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 150364349 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4497;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150364387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.599;LDAF=0.0075;AVGPOST=0.9953;RSQ=0.7346;ERATE=0.0008;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150364441 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0079;AVGPOST=0.9949;RSQ=0.8081;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150364490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0086;AVGPOST=0.9989;RSQ=0.9499;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150364529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0038;AVGPOST=0.9971;RSQ=0.7243;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150364530 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1084;AVGPOST=0.9975;RSQ=0.9918;ERATE=0.0003;THETA=0.0016;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150364667 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.3680;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364827 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0145;AVGPOST=0.9962;RSQ=0.8812;ERATE=0.0004;THETA=0.0011;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150364861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150364924 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1095;AVGPOST=0.9983;RSQ=0.9934;ERATE=0.0004;THETA=0.0014;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150364925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.1106;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0003;THETA=0.0006;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 150364931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1099;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0007;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0173;AVGPOST=0.9992;RSQ=0.9815;ERATE=0.0004;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150365075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0172;AVGPOST=0.9994;RSQ=0.9827;ERATE=0.0004;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150365076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150365157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9427;ERATE=0.0003;THETA=0.0028;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150365163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6350;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150365232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.7062;ERATE=0.0004;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150365233 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0559;AVGPOST=0.9987;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 150365389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0352;AVGPOST=0.9980;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 150365427 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9112;ERATE=0.0005;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150365473 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1096;AVGPOST=0.9966;RSQ=0.9880;ERATE=0.0006;THETA=0.0009;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0087;AVGPOST=0.9925;RSQ=0.6307;ERATE=0.0027;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150365585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1108;AVGPOST=0.9971;RSQ=0.9893;ERATE=0.0006;THETA=0.0029;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365667 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8719;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150365668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1085;AVGPOST=0.9963;RSQ=0.9874;ERATE=0.0003;THETA=0.0005;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 150365705 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1101;AVGPOST=0.9978;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1772;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0003;THETA=0.0008;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 150365717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365718 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1106;AVGPOST=0.9978;RSQ=0.9929;ERATE=0.0003;THETA=0.0010;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9881;ERATE=0.0003;THETA=0.0012;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150365787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1101;AVGPOST=0.9963;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 150365793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7771;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150365808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1104;AVGPOST=0.9990;RSQ=0.9969;ERATE=0.0004;THETA=0.0014;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150365848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0912;AVGPOST=0.9988;RSQ=0.9948;ERATE=0.0004;THETA=0.0011;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 150365942 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150365974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0170;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 150365985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150366053 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1111;AVGPOST=0.9981;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 150366127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1074;AVGPOST=0.9963;RSQ=0.9865;ERATE=0.0005;THETA=0.0016;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 150366147 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1071;AVGPOST=0.9961;RSQ=0.9846;ERATE=0.0006;THETA=0.0008;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 150366217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150366218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.6797;ERATE=0.0006;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150366227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.968;LDAF=0.2293;AVGPOST=0.9747;RSQ=0.9423;ERATE=0.0012;THETA=0.0008;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 150366243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0335;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0004;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 150366285 . TAAAGG T 1332 PASS INDEL;BAVGPOST=0.995;BRSQ=0.746;LDAF=0.0189;AVGPOST=0.9908;RSQ=0.8087;ERATE=0.0008;THETA=0.0012;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 150366286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1085;AVGPOST=0.9976;RSQ=0.9916;ERATE=0.0003;THETA=0.0007;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 150366437 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150366545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9712;ERATE=0.0002;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150366590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5801;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150366635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0465;AVGPOST=0.9987;RSQ=0.9884;ERATE=0.0003;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 150366764 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9997;AVGPOST=0.9995;RSQ=0.0662;ERATE=0.0003;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 150366869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7742;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150366995 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150367065 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150367117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6827;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150367268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0091;AVGPOST=0.9989;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150367338 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1680;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0003;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 150367558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9613;ERATE=0.0002;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150367622 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.8872;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150367759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150367798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150367813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0309;AVGPOST=0.9990;RSQ=0.9851;ERATE=0.0003;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 150367943 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8774;AVGPOST=0.9970;RSQ=0.9895;ERATE=0.0005;THETA=0.0004;AC=1918;AN=2184 GT:DS:GL:BD 0.87820512 1 1 150368034 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6722;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150368050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1681;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0003;THETA=0.0002;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 150368189 . T TA 196 PASS INDEL;BAVGPOST=0.984;BRSQ=0.626;LDAF=0.0398;AVGPOST=0.9521;RSQ=0.5118;ERATE=0.0120;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150368199 rs11398166 T TA 93830 PASS INDEL;BAVGPOST=0.985;BRSQ=0.689;LDAF=0.9639;AVGPOST=0.9615;RSQ=0.5721;ERATE=0.0104;THETA=0.0007;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 150368202 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9070;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150368238 rs11398165 T TG 49649 PASS INDEL;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.5359;AVGPOST=0.9888;RSQ=0.9851;ERATE=0.0005;THETA=0.0004;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 150368307 . G GA 5804 PASS INDEL;BAVGPOST=0.921;BRSQ=0.863;LDAF=0.4633;AVGPOST=0.8823;RSQ=0.8353;ERATE=0.0290;THETA=0.0004;AC=1048;AN=2184 GT:DS:GL:BD 0.47985348 0 1 150368311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.9990;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0004;THETA=0.0004;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 150368325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1676;AVGPOST=0.9972;RSQ=0.9926;ERATE=0.0003;THETA=0.0003;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 150368342 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150368346 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9995;RSQ=0.9805;ERATE=0.0003;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150368458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0040;AVGPOST=0.9951;RSQ=0.5813;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150368471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1563;AVGPOST=0.9970;RSQ=0.9913;ERATE=0.0005;THETA=0.0003;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 150368488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0002;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150368606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150368649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.7980;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150368686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0120;AVGPOST=0.9988;RSQ=0.9513;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150368739 . AAAAT A 44 PASS INDEL;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6548;ERATE=0.0002;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150368766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0064;AVGPOST=0.9993;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150368901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0063;AVGPOST=0.9988;RSQ=0.9263;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150368910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0032;AVGPOST=0.9965;RSQ=0.6776;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150368955 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5142;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150369033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9224;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150369124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4107;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150369174 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9997;RSQ=0.0497;ERATE=0.0003;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 150369233 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9927;ERATE=0.0002;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 150369319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9726;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150369321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0410;AVGPOST=0.9984;RSQ=0.9857;ERATE=0.0002;THETA=0.0006;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 150369322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.966;LDAF=0.5249;AVGPOST=0.9832;RSQ=0.9770;ERATE=0.0010;THETA=0.0005;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 150369438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9261;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150369439 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4289;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150369451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.529;LDAF=0.0059;AVGPOST=0.9949;RSQ=0.6217;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150369589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1176;AVGPOST=0.9954;RSQ=0.9841;ERATE=0.0010;THETA=0.0010;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 150369602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0403;AVGPOST=0.9985;RSQ=0.9859;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 150369701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.9986;AVGPOST=0.9987;RSQ=0.6474;ERATE=0.0008;THETA=0.0009;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 150369725 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5488;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150369747 . C CA 250 PASS INDEL;BAVGPOST=0.996;BRSQ=0.571;LDAF=0.0050;AVGPOST=0.9953;RSQ=0.6014;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150369915 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0441;AVGPOST=0.9918;RSQ=0.9264;ERATE=0.0008;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 150370015 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0222;AVGPOST=0.9860;RSQ=0.7524;ERATE=0.0009;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150370018 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.291;LDAF=0.0074;AVGPOST=0.9879;RSQ=0.3542;ERATE=0.0011;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150370037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.313;LDAF=0.0065;AVGPOST=0.9930;RSQ=0.5384;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150370073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.891;LDAF=0.0423;AVGPOST=0.9824;RSQ=0.8432;ERATE=0.0010;THETA=0.0007;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 150370132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0103;AVGPOST=0.9920;RSQ=0.7027;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150370144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.472;LDAF=0.0226;AVGPOST=0.9759;RSQ=0.5788;ERATE=0.0016;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150370162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.880;LDAF=0.1702;AVGPOST=0.9521;RSQ=0.8725;ERATE=0.0028;THETA=0.0005;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 150370224 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0155;AVGPOST=0.9907;RSQ=0.7745;ERATE=0.0010;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150370305 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6938;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150370534 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1570;AVGPOST=0.9980;RSQ=0.9934;ERATE=0.0005;THETA=0.0007;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 150370576 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150370608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150370750 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9647;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150370756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0081;AVGPOST=0.9947;RSQ=0.7722;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150370792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7186;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150370838 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150370866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6562;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150370880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.9984;AVGPOST=0.9991;RSQ=0.7464;ERATE=0.0005;THETA=0.0033;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 150370887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.761;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9004;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150370930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3676;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150370953 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0966;AVGPOST=0.9964;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 150371020 rs36024946 C CA 75322 PASS INDEL;BAVGPOST=0.996;BRSQ=0.442;LDAF=0.9938;AVGPOST=0.9910;RSQ=0.4476;ERATE=0.0015;THETA=0.0005;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 150371032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0965;AVGPOST=0.9965;RSQ=0.9868;ERATE=0.0003;THETA=0.0003;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 150371057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0411;AVGPOST=0.9982;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 150371072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0074;AVGPOST=0.9955;RSQ=0.7548;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150371136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.746;LDAF=0.0152;AVGPOST=0.9920;RSQ=0.7929;ERATE=0.0005;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150371256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8440;ERATE=0.0002;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150371281 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0434;AVGPOST=0.9991;RSQ=0.9913;ERATE=0.0003;THETA=0.0006;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 150371330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0116;AVGPOST=0.9997;RSQ=0.9866;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150371440 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8445;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150371527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9243;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150371542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0115;AVGPOST=0.9994;RSQ=0.9770;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150371585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5658;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150371663 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7826;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150371673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0088;AVGPOST=0.9992;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150371698 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9189;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150371748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150371767 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0165;AVGPOST=0.9987;RSQ=0.9627;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150371951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3737;AVGPOST=0.9966;RSQ=0.9940;ERATE=0.0007;THETA=0.0002;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 150372038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0317;AVGPOST=0.9991;RSQ=0.9879;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 150372138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5175;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150372350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9665;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150372444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0334;AVGPOST=0.9959;RSQ=0.9503;ERATE=0.0004;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 150372472 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0317;AVGPOST=0.9993;RSQ=0.9889;ERATE=0.0004;THETA=0.0009;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 150372476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150372482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7399;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150372490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6310;AVGPOST=0.9911;RSQ=0.9860;ERATE=0.0015;THETA=0.0005;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 150372498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9984;RSQ=0.9332;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150372499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1362;AVGPOST=0.9952;RSQ=0.9841;ERATE=0.0004;THETA=0.0003;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 150372526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9974;RSQ=0.9162;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150372672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5669;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150372718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150372772 . CA C 430 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9250;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150372830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8151;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150372925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0328;AVGPOST=0.9983;RSQ=0.9787;ERATE=0.0004;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 150372984 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150373053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8162;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150373127 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150373449 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7429;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150373484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6006;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150373556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0026;AVGPOST=0.9955;RSQ=0.3075;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150373569 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4734;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150373570 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3654;AVGPOST=0.9970;RSQ=0.9947;ERATE=0.0005;THETA=0.0003;AC=797;AN=2184 GT:DS:GL:BD 0.36492673 0 1 150373603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0280;AVGPOST=0.9988;RSQ=0.9807;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 150373607 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4280;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0005;THETA=0.0008;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 150373625 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150373636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9568;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150373639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150373641 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4120;AVGPOST=0.9972;RSQ=0.9951;ERATE=0.0004;THETA=0.0009;AC=898;AN=2184 GT:DS:GL:BD 0.41117215 0 1 150373691 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6942;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150373705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0030;AVGPOST=0.9974;RSQ=0.6561;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150373734 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0316;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 150373748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0071;AVGPOST=0.9968;RSQ=0.8288;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150373801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.721;LDAF=0.0069;AVGPOST=0.9950;RSQ=0.7139;ERATE=0.0008;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150373802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0068;AVGPOST=0.9965;RSQ=0.8087;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150373919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7179;ERATE=0.0006;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150373939 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0127;AVGPOST=0.9955;RSQ=0.8664;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150374024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.0097;AVGPOST=0.9957;RSQ=0.8345;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150374066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.321;LDAF=0.0082;AVGPOST=0.9879;RSQ=0.4397;ERATE=0.0019;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150374270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0026;AVGPOST=0.9960;RSQ=0.4229;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150374277 . ATTGTC A 483 PASS INDEL;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0076;AVGPOST=0.9984;RSQ=0.9045;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150374318 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.706;LDAF=0.0046;AVGPOST=0.9957;RSQ=0.6463;ERATE=0.0007;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150374321 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.947;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150374352 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9957;AVGPOST=0.9982;RSQ=0.8354;ERATE=0.0009;THETA=0.0004;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 150374495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1382;AVGPOST=0.9952;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 150374565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4160;AVGPOST=0.9948;RSQ=0.9911;ERATE=0.0009;THETA=0.0002;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 150374566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6720;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150374574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4377;AVGPOST=0.9934;RSQ=0.9896;ERATE=0.0012;THETA=0.0003;AC=957;AN=2184 GT:DS:GL:BD 0.43818682 0 1 150374628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4873;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150374660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.3668;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150374662 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4541;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150374663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8935;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150374691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5198;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150374693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0321;AVGPOST=0.9985;RSQ=0.9785;ERATE=0.0004;THETA=0.0002;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 150374707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0114;AVGPOST=0.9974;RSQ=0.9140;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150374708 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.707;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6656;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150374769 . TCA T 547 PASS INDEL;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0094;AVGPOST=0.9962;RSQ=0.8278;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150374999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4129;ERATE=0.0005;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150375066 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4228;AVGPOST=0.9913;RSQ=0.9859;ERATE=0.0013;THETA=0.0002;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 150375176 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0130;AVGPOST=0.9984;RSQ=0.9489;ERATE=0.0004;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150375231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4280;AVGPOST=0.9975;RSQ=0.9955;ERATE=0.0006;THETA=0.0004;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 150375396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3645;AVGPOST=0.9976;RSQ=0.9955;ERATE=0.0005;THETA=0.0003;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 150375438 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4281;AVGPOST=0.9965;RSQ=0.9934;ERATE=0.0006;THETA=0.0006;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 150375549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4140;AVGPOST=0.9937;RSQ=0.9896;ERATE=0.0012;THETA=0.0003;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 150375584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9512;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150375592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1787;AVGPOST=0.9934;RSQ=0.9822;ERATE=0.0005;THETA=0.0004;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 150375606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0063;AVGPOST=0.9979;RSQ=0.8579;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150375607 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9334;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150375811 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9969;RSQ=0.8422;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150375885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7791;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150375927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150376054 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5962;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150376319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150376342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1371;AVGPOST=0.9981;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 150376343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4108;AVGPOST=0.9969;RSQ=0.9947;ERATE=0.0005;THETA=0.0002;AC=897;AN=2184 GT:DS:GL:BD 0.41071430 0 1 150376367 . A AT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150376442 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5611;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150376491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0116;AVGPOST=0.9989;RSQ=0.9607;ERATE=0.0003;THETA=0.0011;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150376523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9989;RSQ=0.9641;ERATE=0.0004;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150376528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0075;AVGPOST=0.9991;RSQ=0.9483;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150376535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.860;LDAF=0.3576;AVGPOST=0.9633;RSQ=0.9403;ERATE=0.0007;THETA=0.0002;AC=795;AN=2184 GT:DS:GL:BD 0.36401099 0 1 150376573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.871;LDAF=0.4023;AVGPOST=0.9600;RSQ=0.9402;ERATE=0.0014;THETA=0.0002;AC=893;AN=2184 GT:DS:GL:BD 0.40888280 0 1 150376578 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0041;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150376686 . T TGG 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150376929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0034;AVGPOST=0.9972;RSQ=0.7030;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150376932 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.484;LDAF=0.0032;AVGPOST=0.9955;RSQ=0.4378;ERATE=0.0012;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150376964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3536;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150377004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4506;ERATE=0.0005;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150377031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4413;AVGPOST=0.9945;RSQ=0.9903;ERATE=0.0009;THETA=0.0007;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 150377104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.838;LDAF=0.0122;AVGPOST=0.9972;RSQ=0.9081;ERATE=0.0011;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150377172 . TA T 12456 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0889;AVGPOST=0.9968;RSQ=0.9844;ERATE=0.0003;THETA=0.0021;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 150377192 . TC T 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7553;ERATE=0.0006;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150377234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.4510;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150377485 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0402;AVGPOST=0.9983;RSQ=0.9786;ERATE=0.0004;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 150377641 . G GTATGTGTATACA 862 PASS INDEL;BAVGPOST=0.987;BRSQ=0.422;LDAF=0.0316;AVGPOST=0.9582;RSQ=0.4562;ERATE=0.0038;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 150377748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.456;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3629;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150377770 . T TG 773 PASS INDEL;BAVGPOST=0.968;BRSQ=0.459;LDAF=0.0482;AVGPOST=0.9347;RSQ=0.4166;ERATE=0.0063;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 150377781 . TATAC T 20657 PASS INDEL;BAVGPOST=0.800;BRSQ=0.533;LDAF=0.6781;AVGPOST=0.7093;RSQ=0.4343;ERATE=0.0495;THETA=0.0006;AC=1586;AN=2184 GT:DS:GL:BD 0.72619045 1 1 150377820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.274;LDAF=0.0407;AVGPOST=0.9369;RSQ=0.3548;ERATE=0.0064;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 150377822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.861;LDAF=0.0684;AVGPOST=0.9914;RSQ=0.9494;ERATE=0.0007;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 150377833 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8297;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150377955 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.795;LDAF=0.0188;AVGPOST=0.9942;RSQ=0.8782;ERATE=0.0007;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 150378115 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6413;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150378218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5299;AVGPOST=0.9919;RSQ=0.9879;ERATE=0.0008;THETA=0.0006;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 150378315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150378346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5332;AVGPOST=0.9961;RSQ=0.9936;ERATE=0.0006;THETA=0.0003;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 150378444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.3933;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150378470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7586;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150378512 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.754;LDAF=0.0053;AVGPOST=0.9951;RSQ=0.6514;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150378585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4431;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150378636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5434;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150378682 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0074;AVGPOST=0.9959;RSQ=0.7941;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150378775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.8989;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150379091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0899;AVGPOST=0.9954;RSQ=0.9759;ERATE=0.0006;THETA=0.0019;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 150379095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5672;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150379105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7907;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150379179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8216;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150379253 . TTGAC T 335 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150379276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.752;LDAF=0.0100;AVGPOST=0.9938;RSQ=0.7243;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150379469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4657;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150379565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7695;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150379665 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.602;LDAF=0.0041;AVGPOST=0.9955;RSQ=0.5741;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150379923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0093;AVGPOST=0.9973;RSQ=0.8734;ERATE=0.0006;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 150379978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4364;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150380053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.6296;AVGPOST=0.9857;RSQ=0.9777;ERATE=0.0013;THETA=0.0006;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 150380174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.4957;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150380206 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0515;AVGPOST=0.9967;RSQ=0.9740;ERATE=0.0004;THETA=0.0006;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 150380308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0043;AVGPOST=0.9982;RSQ=0.8492;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150380312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0030;AVGPOST=0.9970;RSQ=0.5778;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150380498 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8601;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150380988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9218;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150381015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9157;ERATE=0.0003;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150381021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150381276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9191;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150381332 . CAGAGTG C 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150381381 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0297;AVGPOST=0.9964;RSQ=0.9490;ERATE=0.0004;THETA=0.0007;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150381562 . T TA 142 PASS INDEL;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6245;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150381587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8815;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150381601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150381688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150381775 . ATTAG A 428 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8511;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150381869 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150381949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8816;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150381955 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5134;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150381963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5004;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150381965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150382037 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150382219 . CAT C 320 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8806;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150382265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0071;AVGPOST=0.9982;RSQ=0.8939;ERATE=0.0004;THETA=0.0033;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150382312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6622;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150382317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3934;AVGPOST=0.9945;RSQ=0.9911;ERATE=0.0005;THETA=0.0013;AC=860;AN=2184 GT:DS:GL:BD 0.39377290 0 1 150382373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1522;AVGPOST=0.9982;RSQ=0.9945;ERATE=0.0004;THETA=0.0009;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 150382394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.617;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7527;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150382470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.822;LDAF=0.0109;AVGPOST=0.9970;RSQ=0.8773;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150382675 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0031;AVGPOST=0.9960;RSQ=0.4719;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150382745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3450;ERATE=0.0005;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150382857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0045;AVGPOST=0.9955;RSQ=0.5587;ERATE=0.0011;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150382861 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1353;AVGPOST=0.9949;RSQ=0.9823;ERATE=0.0006;THETA=0.0006;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 150382882 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.934;LDAF=0.1388;AVGPOST=0.9931;RSQ=0.9765;ERATE=0.0005;THETA=0.0005;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 150382920 rs71667836 C CA 2413 PASS INDEL;BAVGPOST=0.954;BRSQ=0.802;LDAF=0.1549;AVGPOST=0.9038;RSQ=0.7121;ERATE=0.0113;THETA=0.0014;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 150382989 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8667;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150383025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1491;AVGPOST=0.9980;RSQ=0.9936;ERATE=0.0005;THETA=0.0006;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 150383203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1365;AVGPOST=0.9982;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 150383259 . GATA G 22 PASS INDEL;BAVGPOST=1.000;BRSQ=0.676;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5416;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4659;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383641 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4054;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4122;AVGPOST=0.9973;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 150383775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9308;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150383792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150383946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1359;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 150383954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5133;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150384040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150384090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150384185 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0095;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150384252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1118;AVGPOST=0.9983;RSQ=0.9927;ERATE=0.0004;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 150384263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150384352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150384360 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150384496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0137;AVGPOST=0.9981;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150384653 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150384727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5335;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150384738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9534;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150384822 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7879;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150385208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1119;AVGPOST=0.9986;RSQ=0.9940;ERATE=0.0005;THETA=0.0005;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 150385254 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.4092;AVGPOST=0.9901;RSQ=0.9848;ERATE=0.0020;THETA=0.0020;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 150385275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9024;ERATE=0.0013;THETA=0.0016;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150385330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8755;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150385421 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1303;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 150385456 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7234;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150385466 rs56709424 ACT A 21593 PASS INDEL;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.1499;AVGPOST=0.9963;RSQ=0.9880;ERATE=0.0007;THETA=0.0011;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 150385519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6473;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150385553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0232;AVGPOST=0.9987;RSQ=0.9800;ERATE=0.0003;THETA=0.0033;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150385663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0256;AVGPOST=0.9988;RSQ=0.9838;ERATE=0.0003;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 150385666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1514;AVGPOST=0.9967;RSQ=0.9895;ERATE=0.0009;THETA=0.0076;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 150385749 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150385898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150385950 . CA C 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4685;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150386004 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7669;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150386011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9730;ERATE=0.0003;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150386015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.978;LDAF=0.4378;AVGPOST=0.9760;RSQ=0.9644;ERATE=0.0058;THETA=0.0003;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 150386070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.831;LDAF=0.0080;AVGPOST=0.9975;RSQ=0.8679;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150386102 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1331;AVGPOST=0.9961;RSQ=0.9898;ERATE=0.0008;THETA=0.0005;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 150386149 . C CT 362 PASS INDEL;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8402;ERATE=0.0003;THETA=0.0126;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150386233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1655;AVGPOST=0.9904;RSQ=0.9764;ERATE=0.0006;THETA=0.0013;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 150386237 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1471;AVGPOST=0.9958;RSQ=0.9894;ERATE=0.0004;THETA=0.0011;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 150386335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1318;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0004;THETA=0.0099;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 150386430 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6839;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150386477 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1336;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0003;THETA=0.0016;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150386588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2522;AVGPOST=0.9947;RSQ=0.9899;ERATE=0.0007;THETA=0.0048;AC=553;AN=2184 GT:DS:GL:BD 0.25320512 0 1 150386612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8678;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150386626 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8934;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150386630 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8773;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150386641 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1336;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150386669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1339;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0005;THETA=0.0015;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 150386674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150386678 . A AG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7023;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150386869 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150386986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5536;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387020 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8289;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150387091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4129;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7687;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150387334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2591;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 150387458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150387502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8812;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150387673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387714 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7551;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150387843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387878 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150387920 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0042;AVGPOST=0.9986;RSQ=0.8968;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150387958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150387998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0133;AVGPOST=0.9972;RSQ=0.9118;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 150388060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6911;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150388249 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9777;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150388264 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150388323 . CTTCT C 393 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0067;AVGPOST=0.9992;RSQ=0.9462;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150388353 . TTC T 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.4002;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150388354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150388355 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0068;AVGPOST=0.9972;RSQ=0.8472;ERATE=0.0005;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150388413 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150388426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9433;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150388500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.4753;ERATE=0.0007;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150388518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0082;AVGPOST=0.9984;RSQ=0.9182;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150388597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150388659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0004;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 150388708 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2590;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 150388769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4941;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150388787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150388849 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8795;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150389020 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.933;LDAF=0.0183;AVGPOST=0.9989;RSQ=0.9728;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 150389042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150389073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150389094 . TGAG T 472 PASS INDEL;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0048;AVGPOST=0.9980;RSQ=0.8242;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150389096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150389184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150389393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4371;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150389498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2584;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 150389508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9324;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150389544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6429;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150389841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8670;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150389860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150389861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.9012;ERATE=0.0003;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150389945 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390009 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150390392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150390402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8989;ERATE=0.0003;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150390445 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150390461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4431;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5800;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0012;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150390657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150390722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.708;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8226;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150390794 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390875 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150390876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.9979;AVGPOST=0.9990;RSQ=0.8137;ERATE=0.0003;THETA=0.0008;AC=2180;AN=2184 GT:DS:GL:BD 0.99816847 1 1 150391029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150391034 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150391196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0311;AVGPOST=0.9990;RSQ=0.9887;ERATE=0.0003;THETA=0.0017;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 150391207 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150391371 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 150391473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0056;AVGPOST=0.9993;RSQ=0.9429;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150391549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7744;ERATE=0.0004;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150391566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8796;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150391844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0075;AVGPOST=0.9964;RSQ=0.8200;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 150392108 . T TA 176 PASS INDEL;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7876;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150392120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4846;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150392123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0123;AVGPOST=0.9970;RSQ=0.8986;ERATE=0.0006;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150392130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.939;LDAF=0.3107;AVGPOST=0.9712;RSQ=0.9590;ERATE=0.0016;THETA=0.0037;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 150392219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.945;LDAF=0.2595;AVGPOST=0.9837;RSQ=0.9749;ERATE=0.0003;THETA=0.0002;AC=554;AN=2184 GT:DS:GL:BD 0.25366300 0 1 150392517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7887;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150392527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9672;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150392609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7735;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150392658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7660;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150392674 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5915;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150392676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6576;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150392719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0090;AVGPOST=0.9978;RSQ=0.9121;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150392736 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.9054;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150392751 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.810;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.3693;ERATE=0.0009;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150392779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8839;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150392833 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0294;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0019;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 150392835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.942;LDAF=0.0401;AVGPOST=0.9914;RSQ=0.9286;ERATE=0.0003;THETA=0.0002;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 150392907 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.941;LDAF=0.2249;AVGPOST=0.9831;RSQ=0.9718;ERATE=0.0004;THETA=0.0010;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 150392912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0336;AVGPOST=0.9976;RSQ=0.9695;ERATE=0.0006;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 150393099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0068;AVGPOST=0.9939;RSQ=0.6343;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150393100 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3805;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150393206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9287;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150393215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.648;LDAF=0.0074;AVGPOST=0.9906;RSQ=0.4774;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150393286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150393288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.936;LDAF=0.2320;AVGPOST=0.9674;RSQ=0.9457;ERATE=0.0012;THETA=0.0006;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 150393311 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150393606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.417;LDAF=0.0009;AVGPOST=0.9983;RSQ=0.2315;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 150393737 . A AC 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0050;AVGPOST=0.9927;RSQ=0.4338;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150393817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.929;LDAF=0.0229;AVGPOST=0.9925;RSQ=0.8901;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 150393862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4798;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150393902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.6442;ERATE=0.0009;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150394071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0081;AVGPOST=0.9980;RSQ=0.8961;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150394107 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0260;AVGPOST=0.9979;RSQ=0.9694;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 150394138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.494;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4733;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150394162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.941;LDAF=0.0400;AVGPOST=0.9899;RSQ=0.9136;ERATE=0.0004;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 150394265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.453;LDAF=0.0017;AVGPOST=0.9971;RSQ=0.3116;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150394288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9959;RSQ=0.8228;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150394306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9967;RSQ=0.7191;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150394440 rs113321076 AG A 21585 PASS INDEL;BAVGPOST=0.974;BRSQ=0.941;LDAF=0.2326;AVGPOST=0.9811;RSQ=0.9684;ERATE=0.0005;THETA=0.0002;AC=495;AN=2184 GT:DS:GL:BD 0.22664835 0 1 150394610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.942;LDAF=0.2377;AVGPOST=0.9752;RSQ=0.9584;ERATE=0.0005;THETA=0.0003;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 150394636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9976;RSQ=0.8999;ERATE=0.0006;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150394733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150394812 . TAC T 56 PASS INDEL;BAVGPOST=0.987;BRSQ=0.568;LDAF=0.0251;AVGPOST=0.9697;RSQ=0.5127;ERATE=0.0084;THETA=0.0015;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150394816 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1814;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 150394826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1803;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0005;THETA=0.0013;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150394949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1802;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150395075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5048;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0004;THETA=0.0005;AC=1100;AN=2184 GT:DS:GL:BD 0.50366300 1 1 150395110 . TC T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150395234 . T TTC 7485 PASS INDEL;BAVGPOST=0.985;BRSQ=0.955;LDAF=0.1834;AVGPOST=0.9826;RSQ=0.9567;ERATE=0.0010;THETA=0.0005;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 150395329 rs112727363 T TCTAAA 39787 PASS INDEL;BAVGPOST=0.986;BRSQ=0.959;LDAF=0.1759;AVGPOST=0.9955;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 150395330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150395386 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0075;AVGPOST=0.9974;RSQ=0.8668;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 150395815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1803;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0005;THETA=0.0009;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150395884 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1801;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0004;THETA=0.0002;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150395960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9753;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150396008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150396204 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2957;AVGPOST=0.9976;RSQ=0.9956;ERATE=0.0006;THETA=0.0005;AC=646;AN=2184 GT:DS:GL:BD 0.29578754 0 1 150396304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150396333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150396537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1793;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0006;THETA=0.0005;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 150396559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9705;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 150396577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1801;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150396628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1802;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150396695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1803;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150396738 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1803;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150396752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150396785 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8680;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 150396787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150396800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8859;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150396919 rs10545020 AAAG A 23633 PASS INDEL;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1811;AVGPOST=0.9911;RSQ=0.9770;ERATE=0.0026;THETA=0.0007;AC=392;AN=2184 GT:DS:GL:BD 0.17948718 0 1 150396958 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9383;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 150397569 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150397579 . TCC T 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5324;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150397668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9668;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 150397847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9273;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150397872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150397883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150397947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150398172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150398287 . G GAGC 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5052;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150398321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150398474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8199;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150398671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9854;ERATE=0.0003;THETA=0.0014;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150398786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5918;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150398793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9298;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150398903 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150398946 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6514;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150398985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7153;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0005;THETA=0.0007;AC=1563;AN=2184 GT:DS:GL:BD 0.71565932 1 1 150399008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4905;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150399193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7102;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150399247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9986;RSQ=0.9563;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 150399268 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150399354 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0105;AVGPOST=0.9962;RSQ=0.8694;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 150399420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.5951;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150399501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.969;LDAF=0.7490;AVGPOST=0.9758;RSQ=0.9554;ERATE=0.0038;THETA=0.0008;AC=1648;AN=2184 GT:DS:GL:BD 0.75457877 1 1 150399516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0231;AVGPOST=0.9994;RSQ=0.9896;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150399649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7363;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150399650 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6817;ERATE=0.0006;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150399677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0043;AVGPOST=0.9958;RSQ=0.6101;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150399738 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.937;LDAF=0.6876;AVGPOST=0.9478;RSQ=0.9192;ERATE=0.0061;THETA=0.0008;AC=1530;AN=2184 GT:DS:GL:BD 0.70054942 1 1 150399763 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4663;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150399867 . G GT 79 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5500;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150400011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150400061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150400226 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150400234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0106;AVGPOST=0.9991;RSQ=0.9698;ERATE=0.0003;THETA=0.0019;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 150400261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150400313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9912;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 150400507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8219;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150400581 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3944;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150400657 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9782;AVGPOST=0.9984;RSQ=0.9665;ERATE=0.0003;THETA=0.0003;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 150400690 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8433;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150400698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9869;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150400893 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8991;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150400930 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6812;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150400949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5521;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150401028 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150401030 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9997;RSQ=0.9809;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150401037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6631;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150401230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0230;AVGPOST=0.9994;RSQ=0.9888;ERATE=0.0003;THETA=0.0021;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 150401852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0003;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 150401892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5899;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150401998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150402122 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9345;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150402166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402240 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4659;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0196;AVGPOST=0.9991;RSQ=0.9819;ERATE=0.0004;THETA=0.0012;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 150402393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150402442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8884;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150402463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8019;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0003;THETA=0.0001;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 150402470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150402487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8035;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1755;AN=2184 GT:DS:GL:BD 0.80357140 1 1 150402577 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0070;AVGPOST=0.9995;RSQ=0.9746;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 150402744 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2235;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 150402836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7363;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150402873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7092;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150402951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1797;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 150403189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150403333 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7445;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150403373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 150403448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150403464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7591;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150403468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150403482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7713;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150403523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7428;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150403539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150403542 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3744;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0007;THETA=0.0007;AC=817;AN=2184 GT:DS:GL:BD 0.37408423 0 1 150403548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.9018;ERATE=0.0003;THETA=0.0070;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 150403655 . AC A 2836 PASS INDEL;BAVGPOST=0.773;BRSQ=0.586;LDAF=0.3419;AVGPOST=0.7824;RSQ=0.6507;ERATE=0.0487;THETA=0.0029;AC=713;AN=2184 GT:DS:GL:BD 0.32646519 0 1 150403672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9402;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150403716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6420;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150403737 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0130;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 150403785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0119;AVGPOST=0.9980;RSQ=0.9379;ERATE=0.0004;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150403825 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9994;RSQ=0.9800;ERATE=0.0003;THETA=0.0033;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 150403897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150404033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.662;LDAF=0.0353;AVGPOST=0.9647;RSQ=0.5930;ERATE=0.0170;THETA=0.0027;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 150404106 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8046;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150404183 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150404471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.3835;AVGPOST=0.9911;RSQ=0.9867;ERATE=0.0021;THETA=0.0003;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 150404531 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150404565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7174;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150404618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8599;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150404619 . C CA 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5904;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150404637 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150404682 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150404692 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7585;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150404711 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.7989;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150404850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0479;AVGPOST=0.9985;RSQ=0.9895;ERATE=0.0004;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 150404861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9395;ERATE=0.0003;THETA=0.0035;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150404968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9172;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150405009 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150405079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150405198 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150405344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8320;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150405394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0154;AVGPOST=0.9972;RSQ=0.9275;ERATE=0.0004;THETA=0.0017;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 150405583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7921;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150405816 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.4743;AVGPOST=0.9891;RSQ=0.9845;ERATE=0.0011;THETA=0.0005;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 150406017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3252;AVGPOST=0.9902;RSQ=0.9839;ERATE=0.0015;THETA=0.0007;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 150406075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.966;LDAF=0.2255;AVGPOST=0.9933;RSQ=0.9836;ERATE=0.0006;THETA=0.0004;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 150406078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150406467 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150406509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150406518 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3224;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0007;THETA=0.0003;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 150406527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8699;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 150406798 . A AGATG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6253;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150406837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7837;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 150406845 . AG A 1708 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0167;AVGPOST=0.9969;RSQ=0.9361;ERATE=0.0004;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150406857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150406943 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150407035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0169;AVGPOST=0.9963;RSQ=0.9142;ERATE=0.0007;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 150407162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150407289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9746;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150407336 . TA T 103 PASS INDEL;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0082;AVGPOST=0.9952;RSQ=0.7607;ERATE=0.0010;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150407449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8193;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150407459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9116;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150407475 . AACTTG A 369 PASS INDEL;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6659;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 150407559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9690;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150407657 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8928;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150407673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5398;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150407695 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9223;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150407715 rs35813926 TA T 11496 PASS INDEL;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0898;AVGPOST=0.9936;RSQ=0.9676;ERATE=0.0005;THETA=0.0004;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 150407722 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9321;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 150407725 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150407770 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150407805 . CA C 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5728;ERATE=0.0007;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150407861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150407914 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9868;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 150408108 . G GT 2307 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9894;ERATE=0.0003;THETA=0.0024;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150408179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150408214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0290;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0018;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 150408219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9875;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 150408363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7226;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 150408369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0367;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0016;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 150408497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.6768;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 150408518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8775;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 150408524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150408654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9849;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150408685 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150408718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9885;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 150408747 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 150408827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 150408878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0150;AVGPOST=0.9992;RSQ=0.9837;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0