1092 10000 1 32436752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0690;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 32436791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2824;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0005;THETA=0.0005;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 32436806 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32436855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7973;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32436867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32436960 . C CT 273 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6545;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32436983 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32437116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6108;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32437217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7257;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=1585;AN=2184 GT:DS:GL:BD 0.72573262 1 1 32437256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6959;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32437383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9626;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32437439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0016;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32437521 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5715;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32437543 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4853;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32437604 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32437633 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32437697 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2836;AVGPOST=0.9972;RSQ=0.9946;ERATE=0.0009;THETA=0.0002;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 32437783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5669;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32437838 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0079;AVGPOST=0.9969;RSQ=0.8493;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32437853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4440;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32437954 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0812;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 32437993 . AC A 8985 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0888;AVGPOST=0.9973;RSQ=0.9866;ERATE=0.0007;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 32438203 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32438244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32438263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1184;AVGPOST=0.9988;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 32438289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5471;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32438376 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4304;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32438406 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0068;AVGPOST=0.9984;RSQ=0.8966;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32438421 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32438426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9006;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32438495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.6071;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32438766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6208;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32438851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7508;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32438860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0573;AVGPOST=0.9909;RSQ=0.9290;ERATE=0.0006;THETA=0.0002;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 32438875 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0058;AVGPOST=0.9979;RSQ=0.8510;ERATE=0.0006;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32439008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0037;AVGPOST=0.9966;RSQ=0.6430;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32439024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0033;AVGPOST=0.9963;RSQ=0.5736;ERATE=0.0014;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32439036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0880;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0005;THETA=0.0002;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 32439085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2792;AVGPOST=0.9982;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 32439087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5980;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32439204 . AG A 104 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7726;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32439234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32439247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32439286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32439460 . GCAC G 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7255;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32439562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.573;LDAF=0.0090;AVGPOST=0.9879;RSQ=0.4760;ERATE=0.0023;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32439679 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9583;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32439717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32439933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7571;ERATE=0.0003;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32439983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32439989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32440025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0855;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 32440042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8466;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32440073 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0649;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32440113 . G GTTTA 220 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4816;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32440118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0219;AVGPOST=0.9984;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32440275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.8045;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32440318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32440358 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6626;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32440408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7193;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=1571;AN=2184 GT:DS:GL:BD 0.71932232 1 1 32440439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1262;AVGPOST=0.9997;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 32440486 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9701;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32440524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32440544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32440568 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0110;AVGPOST=0.9979;RSQ=0.9262;ERATE=0.0005;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32440775 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32440779 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32440804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9639;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32440823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0061;AVGPOST=0.9967;RSQ=0.7825;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32440824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7204;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32440837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0897;AVGPOST=0.9989;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 32440838 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32441155 . C CA 705 PASS INDEL;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0062;AVGPOST=0.9958;RSQ=0.7587;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32441186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0698;ERATE=0.0002;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32441236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0217;AVGPOST=0.9986;RSQ=0.9770;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32441404 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9996;RSQ=0.0622;ERATE=0.0003;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 32441523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0166;AVGPOST=0.9986;RSQ=0.9701;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32441545 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.591;LDAF=0.0108;AVGPOST=0.9849;RSQ=0.4518;ERATE=0.0037;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32441587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6406;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32441655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8710;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32441770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32441844 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5497;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32441869 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.1256;AVGPOST=0.9988;RSQ=0.9953;ERATE=0.0005;THETA=0.0002;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32441963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5096;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32442054 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32442281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0094;AVGPOST=0.9981;RSQ=0.9371;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32442476 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32442617 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9794;ERATE=0.0002;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32442697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3652;AVGPOST=0.9961;RSQ=0.9932;ERATE=0.0011;THETA=0.0009;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 32442752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9316;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32443072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3511;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 32443105 . C CT 9 PASS INDEL;BAVGPOST=0.998;BRSQ=0.682;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6804;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32443135 . TC T 223 PASS INDEL;BAVGPOST=0.996;BRSQ=0.874;LDAF=0.0160;AVGPOST=0.9981;RSQ=0.9520;ERATE=0.0002;THETA=0.0001;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32443136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0159;AVGPOST=0.9985;RSQ=0.9621;ERATE=0.0004;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32443137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32443243 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9988;RSQ=0.9657;ERATE=0.0004;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32443321 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8774;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32443347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5486;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32443409 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5106;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32443519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32443523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6924;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32443542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32443604 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32443633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6669;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32443635 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9528;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32443679 . TAA T 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32443746 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7877;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32443962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6528;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32444027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32444212 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5494;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444237 . G GT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444277 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9875;ERATE=0.0002;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32444279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3827;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 32444384 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1192;AVGPOST=0.9979;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 32444481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9253;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32444524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0066;AVGPOST=0.9982;RSQ=0.9164;ERATE=0.0002;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32444595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1189;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32444639 . G GT 106 PASS INDEL;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.3027;ERATE=0.0010;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444720 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1266;AVGPOST=0.9948;RSQ=0.9839;ERATE=0.0010;THETA=0.0002;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 32444726 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1252;AVGPOST=0.9979;RSQ=0.9927;ERATE=0.0005;THETA=0.0002;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 32444748 . C CA 87 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7552;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32444801 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6270;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32444809 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32444867 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0837;AVGPOST=0.9980;RSQ=0.9901;ERATE=0.0005;THETA=0.0012;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 32444951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.722;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8459;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32444959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0501;AVGPOST=0.9977;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 32445028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9700;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32445106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0131;AVGPOST=0.9979;RSQ=0.9288;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32445119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32445134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9666;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32445230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0198;AVGPOST=0.9997;RSQ=0.9941;ERATE=0.0002;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32445262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8908;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32445288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32445321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0087;AVGPOST=0.9992;RSQ=0.9642;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32445409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8020;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32445492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32445509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7772;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32445592 . GC G 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7008;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32445746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8589;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32445775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6536;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32445779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9996;RSQ=0.9824;ERATE=0.0002;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32445803 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9208;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32446022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8155;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32446084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0426;AVGPOST=0.9988;RSQ=0.9886;ERATE=0.0003;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32446124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1256;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 32446135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8986;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32446152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0200;AVGPOST=0.9989;RSQ=0.9785;ERATE=0.0009;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32446204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32446244 . G GA 599 PASS INDEL;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0089;AVGPOST=0.9920;RSQ=0.6700;ERATE=0.0022;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32446250 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1256;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 32446290 . C CT 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7691;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32446321 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0140;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32446329 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0182;AVGPOST=0.9980;RSQ=0.9554;ERATE=0.0005;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32446335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7737;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32446370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32446397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6908;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32446407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32446423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32446456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32446470 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32446774 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32446812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9361;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32446934 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6414;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=1401;AN=2184 GT:DS:GL:BD 0.64148355 1 1 32446944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.821;LDAF=0.0105;AVGPOST=0.9967;RSQ=0.8718;ERATE=0.0006;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32447053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6588;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32447168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5956;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32447172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0050;AVGPOST=0.9995;RSQ=0.9573;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32447195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32447222 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.970;LDAF=0.7928;AVGPOST=0.9836;RSQ=0.9646;ERATE=0.0029;THETA=0.0028;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 32447234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8154;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32447253 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0183;AVGPOST=0.9973;RSQ=0.9515;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32447254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32447510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4953;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32447520 rs10626410 T TTTA 65715 PASS INDEL;BAVGPOST=0.966;BRSQ=0.943;LDAF=0.6531;AVGPOST=0.9732;RSQ=0.9609;ERATE=0.0004;THETA=0.0003;AC=1442;AN=2184 GT:DS:GL:BD 0.66025639 1 1 32447612 rs33937282 T TTA 29227 PASS INDEL;BAVGPOST=0.962;BRSQ=0.935;LDAF=0.6504;AVGPOST=0.9598;RSQ=0.9421;ERATE=0.0011;THETA=0.0008;AC=1433;AN=2184 GT:DS:GL:BD 0.65613556 1 1 32447613 . T TA 14351 PASS INDEL;BAVGPOST=0.930;BRSQ=0.880;LDAF=0.6251;AVGPOST=0.8939;RSQ=0.8415;ERATE=0.0138;THETA=0.0004;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 32447614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.916;LDAF=0.7814;AVGPOST=0.9738;RSQ=0.9440;ERATE=0.0012;THETA=0.0002;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 32447649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0309;AVGPOST=0.9953;RSQ=0.9516;ERATE=0.0003;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32447685 . ACC A 61 PASS INDEL;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4074;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32447711 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6576;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32447749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.967;LDAF=0.7981;AVGPOST=0.9899;RSQ=0.9762;ERATE=0.0008;THETA=0.0029;AC=1748;AN=2184 GT:DS:GL:BD 0.80036628 1 1 32447796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.8988;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32447813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.949;LDAF=0.6282;AVGPOST=0.9768;RSQ=0.9669;ERATE=0.0032;THETA=0.0009;AC=1386;AN=2184 GT:DS:GL:BD 0.63461536 1 1 32447914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8136;ERATE=0.0006;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32447983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0100;AVGPOST=0.9986;RSQ=0.9548;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32448057 . A AG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448076 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6595;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9995;RSQ=0.9718;ERATE=0.0003;THETA=0.0020;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32448173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0487;AVGPOST=0.9984;RSQ=0.9862;ERATE=0.0004;THETA=0.0024;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32448185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.8365;AVGPOST=0.9955;RSQ=0.9876;ERATE=0.0003;THETA=0.0005;AC=1828;AN=2184 GT:DS:GL:BD 0.83699632 1 1 32448204 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0229;AVGPOST=0.9988;RSQ=0.9789;ERATE=0.0005;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32448403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5778;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32448673 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8246;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32448734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6685;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0005;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 32448898 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32448984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6693;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0010;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 32449025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32449175 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9807;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32449182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7422;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32449283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32449332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32449356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.677;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6818;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32449365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0073;AVGPOST=0.9978;RSQ=0.8830;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32449395 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8539;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32449432 . TTTG T 710 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0095;AVGPOST=0.9993;RSQ=0.9650;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32449436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32449499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7435;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32449503 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9269;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32449548 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6182;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32449724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0070;AVGPOST=0.9985;RSQ=0.9051;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32449798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32449809 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32449842 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.954;LDAF=0.6222;AVGPOST=0.9597;RSQ=0.9369;ERATE=0.0052;THETA=0.0004;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 32449879 . TCC T 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32449892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0048;AVGPOST=0.9975;RSQ=0.7869;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32449925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0088;AVGPOST=0.9953;RSQ=0.7868;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32449941 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.6659;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0008;THETA=0.0011;AC=1459;AN=2184 GT:DS:GL:BD 0.66804028 1 1 32450030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9579;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32450044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.855;LDAF=0.0306;AVGPOST=0.9855;RSQ=0.8211;ERATE=0.0032;THETA=0.0011;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32450085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6701;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32450138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.955;LDAF=0.6308;AVGPOST=0.9565;RSQ=0.9355;ERATE=0.0125;THETA=0.0005;AC=1396;AN=2184 GT:DS:GL:BD 0.63919413 1 1 32450160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32450234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0259;AVGPOST=0.9987;RSQ=0.9799;ERATE=0.0004;THETA=0.0014;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32450255 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.965;LDAF=0.1061;AVGPOST=0.9965;RSQ=0.9884;ERATE=0.0005;THETA=0.0007;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32450341 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.808;LDAF=0.0118;AVGPOST=0.9965;RSQ=0.8887;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32450353 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8229;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32450360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.606;LDAF=0.0050;AVGPOST=0.9978;RSQ=0.7915;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32450380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0120;AVGPOST=0.9955;RSQ=0.8540;ERATE=0.0007;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32450401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.357;LDAF=0.0180;AVGPOST=0.9762;RSQ=0.5029;ERATE=0.0033;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32450402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5067;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32450416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0044;AVGPOST=0.9989;RSQ=0.9051;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32450614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0160;AVGPOST=0.9787;RSQ=0.5268;ERATE=0.0009;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32450677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6778;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32450714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0119;AVGPOST=0.9990;RSQ=0.9642;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32450722 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7494;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32450729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.337;LDAF=0.0052;AVGPOST=0.9939;RSQ=0.4987;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32450754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.462;BRSQ=0.041;LDAF=0.6734;AVGPOST=0.6120;RSQ=0.2695;ERATE=0.0079;THETA=0.0045;AC=1723;AN=2184 GT:DS:GL:BD 0.78891939 1 1 32450774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.141;LDAF=0.0255;AVGPOST=0.9553;RSQ=0.1966;ERATE=0.0014;THETA=0.0140;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32450975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.805;BRSQ=0.360;LDAF=0.1637;AVGPOST=0.8355;RSQ=0.4904;ERATE=0.0046;THETA=0.0147;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 32450990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.745;LDAF=0.0084;AVGPOST=0.9926;RSQ=0.6711;ERATE=0.0006;THETA=0.0092;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32452278 . C CT 1635 PASS INDEL;BAVGPOST=0.918;BRSQ=0.552;LDAF=0.0978;AVGPOST=0.9217;RSQ=0.6606;ERATE=0.0047;THETA=0.0099;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 32452568 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.582;BRSQ=0.608;LDAF=0.7473;AVGPOST=0.8308;RSQ=0.6909;ERATE=0.0041;THETA=0.0097;AC=1689;AN=2184 GT:DS:GL:BD 0.77335167 1 1 32452725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.582;LDAF=0.0776;AVGPOST=0.9321;RSQ=0.5884;ERATE=0.0078;THETA=0.0161;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 32452967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.823;BRSQ=0.487;LDAF=0.2549;AVGPOST=0.8185;RSQ=0.5891;ERATE=0.0073;THETA=0.0025;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 32453008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.567;BRSQ=0.544;LDAF=0.3973;AVGPOST=0.7338;RSQ=0.6145;ERATE=0.0014;THETA=0.0082;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 32453213 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.201;LDAF=0.0045;AVGPOST=0.9915;RSQ=0.1347;ERATE=0.0014;THETA=0.0151;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32453216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.218;LDAF=0.0030;AVGPOST=0.9947;RSQ=0.1863;ERATE=0.0007;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32453222 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.307;LDAF=0.0793;AVGPOST=0.8876;RSQ=0.3340;ERATE=0.0054;THETA=0.0023;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32453230 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.586;BRSQ=0.529;LDAF=0.3914;AVGPOST=0.7289;RSQ=0.6022;ERATE=0.0039;THETA=0.0083;AC=778;AN=2184 GT:DS:GL:BD 0.35622710 0 1 32453237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.227;LDAF=0.0778;AVGPOST=0.8912;RSQ=0.3580;ERATE=0.0034;THETA=0.0022;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32453244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.353;LDAF=0.3126;AVGPOST=0.7363;RSQ=0.5214;ERATE=0.0032;THETA=0.0054;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 32453248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.186;LDAF=0.0608;AVGPOST=0.9046;RSQ=0.3232;ERATE=0.0021;THETA=0.0065;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32453253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.188;LDAF=0.0458;AVGPOST=0.9265;RSQ=0.3061;ERATE=0.0008;THETA=0.0073;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32453260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.701;BRSQ=0.374;LDAF=0.2013;AVGPOST=0.8170;RSQ=0.6200;ERATE=0.0022;THETA=0.0054;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 32453277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7575;ERATE=0.0003;THETA=0.0073;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32453495 . TC T 310 PASS INDEL;BAVGPOST=0.990;BRSQ=0.520;LDAF=0.0192;AVGPOST=0.9754;RSQ=0.4460;ERATE=0.0040;THETA=0.0117;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32453534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.532;LDAF=0.0691;AVGPOST=0.9459;RSQ=0.6578;ERATE=0.0021;THETA=0.0018;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32453610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.765;BRSQ=0.500;LDAF=0.2104;AVGPOST=0.8224;RSQ=0.6540;ERATE=0.0040;THETA=0.0046;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 32453619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.678;LDAF=0.0110;AVGPOST=0.9882;RSQ=0.6037;ERATE=0.0013;THETA=0.0090;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32453638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.839;BRSQ=0.285;LDAF=0.1424;AVGPOST=0.8227;RSQ=0.4116;ERATE=0.0091;THETA=0.0150;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 32453639 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.426;LDAF=0.1131;AVGPOST=0.8942;RSQ=0.5642;ERATE=0.0022;THETA=0.0088;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 32453656 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.136;LDAF=0.0079;AVGPOST=0.9864;RSQ=0.2226;ERATE=0.0010;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32453661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.478;LDAF=0.0108;AVGPOST=0.9838;RSQ=0.3103;ERATE=0.0018;THETA=0.0141;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32453669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.729;BRSQ=0.183;LDAF=0.1626;AVGPOST=0.8087;RSQ=0.4065;ERATE=0.0031;THETA=0.0030;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 32453671 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.473;BRSQ=0.629;LDAF=0.7731;AVGPOST=0.8245;RSQ=0.6920;ERATE=0.0021;THETA=0.0048;AC=1798;AN=2184 GT:DS:GL:BD 0.82326007 1 1 32453710 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.432;LDAF=0.0216;AVGPOST=0.9702;RSQ=0.4514;ERATE=0.0024;THETA=0.0084;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32453717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.179;LDAF=0.0455;AVGPOST=0.9209;RSQ=0.2295;ERATE=0.0051;THETA=0.0084;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32453962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.217;LDAF=0.0777;AVGPOST=0.8841;RSQ=0.2991;ERATE=0.0063;THETA=0.0040;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32453970 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.688;BRSQ=0.273;LDAF=0.2483;AVGPOST=0.6955;RSQ=0.3792;ERATE=0.0053;THETA=0.0190;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32453978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.200;LDAF=0.0745;AVGPOST=0.8896;RSQ=0.3116;ERATE=0.0027;THETA=0.0030;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32453990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.715;BRSQ=0.259;LDAF=0.1915;AVGPOST=0.7987;RSQ=0.5087;ERATE=0.0038;THETA=0.0127;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 32453991 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.700;LDAF=0.0373;AVGPOST=0.9778;RSQ=0.8000;ERATE=0.0004;THETA=0.0108;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 32454149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.702;BRSQ=0.090;LDAF=0.2250;AVGPOST=0.6758;RSQ=0.2364;ERATE=0.0178;THETA=0.0010;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 32455546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.662;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.6191;ERATE=0.0012;THETA=0.0087;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32455756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.678;LDAF=0.9092;AVGPOST=0.9452;RSQ=0.7415;ERATE=0.0034;THETA=0.0131;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 32455919 . G GT 48 PASS INDEL;BAVGPOST=0.996;BRSQ=0.421;LDAF=0.0163;AVGPOST=0.9727;RSQ=0.2776;ERATE=0.0022;THETA=0.0095;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32456191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.831;LDAF=0.9553;AVGPOST=0.9856;RSQ=0.8691;ERATE=0.0005;THETA=0.0155;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 32459017 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.813;BRSQ=0.547;LDAF=0.3204;AVGPOST=0.8189;RSQ=0.6260;ERATE=0.0251;THETA=0.0257;AC=596;AN=2184 GT:DS:GL:BD 0.27289379 0 1 32459841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.666;LDAF=0.5034;AVGPOST=0.8544;RSQ=0.7363;ERATE=0.0010;THETA=0.0010;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 32459868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.666;LDAF=0.5046;AVGPOST=0.8541;RSQ=0.7366;ERATE=0.0005;THETA=0.0099;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 32459880 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.510;LDAF=0.0438;AVGPOST=0.9560;RSQ=0.5488;ERATE=0.0036;THETA=0.0172;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32459938 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.495;LDAF=0.0061;AVGPOST=0.9901;RSQ=0.3212;ERATE=0.0009;THETA=0.0122;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32459998 rs60060263 TC T 1258 PASS INDEL;BAVGPOST=0.992;BRSQ=0.811;LDAF=0.0241;AVGPOST=0.9916;RSQ=0.8512;ERATE=0.0012;THETA=0.0130;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32461074 . CT C 190 PASS INDEL;BAVGPOST=0.990;BRSQ=0.217;LDAF=0.0291;AVGPOST=0.9455;RSQ=0.1653;ERATE=0.0016;THETA=0.0092;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32462406 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32462493 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0002;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32462659 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32462668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32462675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32462699 . GGAA G 267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5141;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32462708 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32462990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9635;ERATE=0.0002;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32463089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463181 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0002;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32463199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0128;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0002;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32463221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0146;AVGPOST=0.9989;RSQ=0.9735;ERATE=0.0002;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32463274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3671;AVGPOST=0.9989;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 32463286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32463348 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32463427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1047;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0008;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 32463490 . TTGTC T 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6265;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463621 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32463740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463781 . TAC T 19087 PASS INDEL;BAVGPOST=0.994;BRSQ=0.975;LDAF=0.1310;AVGPOST=0.9931;RSQ=0.9782;ERATE=0.0005;THETA=0.0004;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32463852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32463925 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9895;ERATE=0.0002;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32463942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32463995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32464101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6277;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464144 rs36000174 TA T 10140 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1053;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 32464202 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7257;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32464295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8285;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32464400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.878;LDAF=0.0139;AVGPOST=0.9979;RSQ=0.9448;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32464421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464670 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9085;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32464684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9780;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32464793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1379;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0002;THETA=0.0059;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 32464873 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1028;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 32464887 . A AG 192 PASS INDEL;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4702;ERATE=0.0007;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32464929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32464931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32464936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32464954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0002;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32464995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32465002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32465011 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0002;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32465063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3554;AVGPOST=0.9993;RSQ=0.9991;ERATE=0.0002;THETA=0.0008;AC=774;AN=2184 GT:DS:GL:BD 0.35439560 0 1 32465095 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32465116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32465172 . GAAT G 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32465186 . AG A 918 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9776;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32465221 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8776;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32465245 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6257;ERATE=0.0003;THETA=0.0055;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32465349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0154;AVGPOST=0.9969;RSQ=0.9294;ERATE=0.0003;THETA=0.0053;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32465514 rs71852297 AG A 26032 PASS INDEL;BAVGPOST=0.935;BRSQ=0.854;LDAF=0.7193;AVGPOST=0.9014;RSQ=0.8183;ERATE=0.0161;THETA=0.0007;AC=1588;AN=2184 GT:DS:GL:BD 0.72710621 1 1 32465590 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8361;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32466006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6700;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32466020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5686;AVGPOST=0.9969;RSQ=0.9945;ERATE=0.0004;THETA=0.0003;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 32466074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9081;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32466128 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32466280 . GAT G 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5688;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32466297 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9807;ERATE=0.0002;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32466304 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8354;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32466382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32466435 . T TTTAA 26831 PASS INDEL;BAVGPOST=0.984;BRSQ=0.946;LDAF=0.1309;AVGPOST=0.9972;RSQ=0.9898;ERATE=0.0004;THETA=0.0002;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32466475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1313;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0004;THETA=0.0032;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32466611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32466664 . T TG 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0017;AVGPOST=0.9980;RSQ=0.4997;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32466706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9415;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32466768 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9647;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0006;AC=2107;AN=2184 GT:DS:GL:BD 0.96474361 1 1 32466810 . CTG C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32466859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7976;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32466875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32466876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.9015;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32466959 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32466988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0030;AVGPOST=0.9971;RSQ=0.6811;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32467038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1211;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0002;THETA=0.0006;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 32467045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6936;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32467093 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8339;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 32467138 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.963;LDAF=0.8261;AVGPOST=0.9929;RSQ=0.9811;ERATE=0.0011;THETA=0.0003;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 32467171 . TG T 190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0051;AVGPOST=0.9992;RSQ=0.9321;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32467193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7969;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32467208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8340;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0003;THETA=0.0007;AC=1821;AN=2184 GT:DS:GL:BD 0.83379120 1 1 32467300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32467313 . TTTG T 229 PASS INDEL;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5268;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32467337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0116;AVGPOST=0.9973;RSQ=0.9088;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32467435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9598;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32467477 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.358;LDAF=0.0134;AVGPOST=0.9821;RSQ=0.4587;ERATE=0.0023;THETA=0.0072;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32467538 . T TA 1225 PASS INDEL;BAVGPOST=0.950;BRSQ=0.545;LDAF=0.0705;AVGPOST=0.9275;RSQ=0.5356;ERATE=0.0104;THETA=0.0095;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32467546 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.781;BRSQ=0.383;LDAF=0.2220;AVGPOST=0.7912;RSQ=0.5422;ERATE=0.0100;THETA=0.0085;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32467578 . TA T 187 PASS INDEL;BAVGPOST=0.965;BRSQ=0.402;LDAF=0.0389;AVGPOST=0.9473;RSQ=0.4137;ERATE=0.0082;THETA=0.0099;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32468359 . T TA 27 PASS INDEL;BAVGPOST=0.996;BRSQ=0.652;LDAF=0.0091;AVGPOST=0.9898;RSQ=0.4927;ERATE=0.0035;THETA=0.0060;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32472742 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4011;ERATE=0.0007;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32472759 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.820;LDAF=0.0217;AVGPOST=0.9937;RSQ=0.8881;ERATE=0.0006;THETA=0.0113;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32472764 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.704;LDAF=0.0169;AVGPOST=0.9967;RSQ=0.9149;ERATE=0.0006;THETA=0.0158;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32473588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.513;LDAF=0.0042;AVGPOST=0.9952;RSQ=0.4900;ERATE=0.0007;THETA=0.0060;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32473716 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5415;ERATE=0.0005;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32473744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.481;LDAF=0.0032;AVGPOST=0.9952;RSQ=0.3422;ERATE=0.0009;THETA=0.0144;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32473758 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0114;AVGPOST=0.9998;RSQ=0.9924;ERATE=0.0002;THETA=0.0051;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32473802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0126;AVGPOST=0.9985;RSQ=0.9495;ERATE=0.0004;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32474022 . G GA 90 PASS INDEL;BAVGPOST=0.986;BRSQ=0.541;LDAF=0.0231;AVGPOST=0.9716;RSQ=0.5036;ERATE=0.0076;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32474023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.3854;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32474069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32474319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9702;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32474384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7198;ERATE=0.0002;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32474487 . C CT 1143 PASS INDEL;BAVGPOST=0.825;BRSQ=0.380;LDAF=0.2308;AVGPOST=0.7526;RSQ=0.3969;ERATE=0.0501;THETA=0.0008;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 32474557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0138;AVGPOST=0.9965;RSQ=0.8927;ERATE=0.0007;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32474594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9400;ERATE=0.0002;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32474646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.9512;AVGPOST=0.9979;RSQ=0.9826;ERATE=0.0006;THETA=0.0006;AC=2079;AN=2184 GT:DS:GL:BD 0.95192307 1 1 32474661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4334;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32474847 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32474923 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.986;LDAF=0.7957;AVGPOST=0.9968;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 32474974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.957;LDAF=0.1109;AVGPOST=0.9903;RSQ=0.9618;ERATE=0.0006;THETA=0.0013;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 32475052 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.7008;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32475107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0002;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32475111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32475332 . AAC A 323 PASS INDEL;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8249;ERATE=0.0003;THETA=0.0034;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32475373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32475399 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0002;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32475419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0193;AVGPOST=0.9997;RSQ=0.9930;ERATE=0.0003;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32475520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0026;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32475569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9666;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32475630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0253;AVGPOST=0.9971;RSQ=0.9566;ERATE=0.0005;THETA=0.0009;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32475631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.535;LDAF=0.9154;AVGPOST=0.9163;RSQ=0.5952;ERATE=0.0126;THETA=0.0006;AC=2040;AN=2184 GT:DS:GL:BD 0.93406594 1 1 32475677 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3994;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32475734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8532;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32475763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0072;AVGPOST=0.9959;RSQ=0.7991;ERATE=0.0004;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32475834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.557;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5610;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32475882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0231;AVGPOST=0.9995;RSQ=0.9904;ERATE=0.0003;THETA=0.0016;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32476050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.9843;AVGPOST=0.9984;RSQ=0.9606;ERATE=0.0003;THETA=0.0011;AC=2151;AN=2184 GT:DS:GL:BD 0.98489010 1 1 32476064 . A AC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32476318 . C CT 991 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9466;ERATE=0.0003;THETA=0.0047;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32476339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32476380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.7952;AVGPOST=0.9954;RSQ=0.9908;ERATE=0.0004;THETA=0.0010;AC=1737;AN=2184 GT:DS:GL:BD 0.79532969 1 1 32476466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9880;ERATE=0.0003;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32476479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0240;AVGPOST=0.9988;RSQ=0.9842;ERATE=0.0003;THETA=0.0012;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32476483 . C CCA 5484 PASS INDEL;BAVGPOST=0.986;BRSQ=0.901;LDAF=0.0434;AVGPOST=0.9912;RSQ=0.9276;ERATE=0.0016;THETA=0.0016;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 32476494 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32476548 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9256;ERATE=0.0002;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32476564 . AC A 148 PASS INDEL;BAVGPOST=0.994;BRSQ=0.740;LDAF=0.0123;AVGPOST=0.9927;RSQ=0.7769;ERATE=0.0006;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32476657 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.800;LDAF=0.0232;AVGPOST=0.9931;RSQ=0.8770;ERATE=0.0010;THETA=0.0013;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32476658 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7934;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32476741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6473;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32476752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0143;AVGPOST=0.9996;RSQ=0.9886;ERATE=0.0002;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32477005 rs34816714 T TG 84435 PASS INDEL;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.9416;AVGPOST=0.9979;RSQ=0.9878;ERATE=0.0004;THETA=0.0026;AC=2058;AN=2184 GT:DS:GL:BD 0.94230771 1 1 32477114 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5159;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477180 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6344;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0133;AVGPOST=0.9976;RSQ=0.9296;ERATE=0.0005;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32477301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.909;LDAF=0.8883;AVGPOST=0.9804;RSQ=0.9393;ERATE=0.0008;THETA=0.0030;AC=1947;AN=2184 GT:DS:GL:BD 0.89148355 1 1 32477346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.599;LDAF=0.0042;AVGPOST=0.9967;RSQ=0.6980;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32477348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3657;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4108;ERATE=0.0005;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.634;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8197;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32477407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.807;LDAF=0.8716;AVGPOST=0.9410;RSQ=0.8058;ERATE=0.0102;THETA=0.0006;AC=1945;AN=2184 GT:DS:GL:BD 0.89056778 1 1 32477431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0192;AVGPOST=0.9979;RSQ=0.9575;ERATE=0.0004;THETA=0.0012;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32477501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32477693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32477733 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8061;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32477738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32477771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4517;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32477850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.839;LDAF=0.0088;AVGPOST=0.9977;RSQ=0.8907;ERATE=0.0005;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32477880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9412;AVGPOST=0.9991;RSQ=0.9940;ERATE=0.0003;THETA=0.0012;AC=2056;AN=2184 GT:DS:GL:BD 0.94139194 1 1 32477923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.7187;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32477970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.873;LDAF=0.9207;AVGPOST=0.9798;RSQ=0.9061;ERATE=0.0009;THETA=0.0006;AC=2022;AN=2184 GT:DS:GL:BD 0.92582417 1 1 32478128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5126;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32478158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0461;AVGPOST=0.9974;RSQ=0.9797;ERATE=0.0004;THETA=0.0018;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32478197 . GA G 263 PASS INDEL;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8843;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32478320 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6819;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32478413 . T TTTG 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4411;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32478517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0148;AVGPOST=0.9989;RSQ=0.9693;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32478531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6791;ERATE=0.0006;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32478649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0082;AVGPOST=0.9995;RSQ=0.9727;ERATE=0.0003;THETA=0.0017;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32478716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32478742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8079;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32478801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0210;AVGPOST=0.9998;RSQ=0.9950;ERATE=0.0003;THETA=0.0009;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32479003 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0167;AVGPOST=0.9992;RSQ=0.9785;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32479038 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32479095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32479208 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6752;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32479694 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32479762 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6610;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32479963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6015;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32480008 . ATCT A 486 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8364;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32480030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32480184 . G GA 317 PASS INDEL;BAVGPOST=0.950;BRSQ=0.497;LDAF=0.0861;AVGPOST=0.8995;RSQ=0.4756;ERATE=0.0221;THETA=0.0006;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 32480316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6997;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32480541 . TA T 125 PASS INDEL;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0042;AVGPOST=0.9934;RSQ=0.3667;ERATE=0.0012;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32480565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5203;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32480594 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9723;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32480617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0069;AVGPOST=0.9973;RSQ=0.8611;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32480686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0160;AVGPOST=0.9976;RSQ=0.9380;ERATE=0.0004;THETA=0.0009;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32480773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9125;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32480774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8118;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32480779 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9528;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32480854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32480902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.819;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9224;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32481022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0216;AVGPOST=0.9994;RSQ=0.9860;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32481050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6500;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0012;AC=1422;AN=2184 GT:DS:GL:BD 0.65109891 1 1 32481431 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8982;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32481486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9407;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32481850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7979;AVGPOST=0.9968;RSQ=0.9919;ERATE=0.0009;THETA=0.0007;AC=1745;AN=2184 GT:DS:GL:BD 0.79899269 1 1 32481861 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9982;RSQ=0.9118;ERATE=0.0005;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32481895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9577;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32481980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7803;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32482052 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32482116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6185;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32482122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.6260;AVGPOST=0.9895;RSQ=0.9836;ERATE=0.0019;THETA=0.0004;AC=1374;AN=2184 GT:DS:GL:BD 0.62912089 1 1 32482321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32482385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8045;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32482434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32482474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32482493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32482536 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6217;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0004;THETA=0.0007;AC=1361;AN=2184 GT:DS:GL:BD 0.62316847 1 1 32482587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9777;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32482725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9572;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32482913 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32483052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32483103 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32483113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0046;AVGPOST=0.9969;RSQ=0.7556;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32483323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5895;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32483459 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9251;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32483630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.647;LDAF=0.0077;AVGPOST=0.9897;RSQ=0.4564;ERATE=0.0026;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32483655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.608;LDAF=0.0053;AVGPOST=0.9949;RSQ=0.6279;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32483656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8621;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32483664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7218;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32483682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8456;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32483954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7676;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32483956 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32483967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32483986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32483990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0004;THETA=0.0078;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32484034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0155;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0059;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32484135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32484141 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32484155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0070;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32484171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32484222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0174;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32484223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32484229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9740;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32484245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32484256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32484268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7891;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32484377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8377;ERATE=0.0010;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32484418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32484438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2611;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0003;THETA=0.0012;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 32484495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32484505 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32484510 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32484620 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4759;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32484644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32484693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.467;LDAF=0.0050;AVGPOST=0.9955;RSQ=0.6663;ERATE=0.0006;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32484708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0731;AVGPOST=0.9979;RSQ=0.9879;ERATE=0.0006;THETA=0.0059;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 32484820 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.884;LDAF=0.2812;AVGPOST=0.9317;RSQ=0.8838;ERATE=0.0185;THETA=0.0023;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 32484929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.784;LDAF=0.1322;AVGPOST=0.9346;RSQ=0.7914;ERATE=0.0179;THETA=0.0021;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 32484944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6736;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32484950 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.894;LDAF=0.2779;AVGPOST=0.9362;RSQ=0.9114;ERATE=0.0194;THETA=0.0043;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 32484972 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32485036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2683;AVGPOST=0.9973;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 32485118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9986;RSQ=0.9265;ERATE=0.0018;THETA=0.0066;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32485144 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9812;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32485149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32485216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3793;AVGPOST=0.9971;RSQ=0.9961;ERATE=0.0024;THETA=0.0019;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 32485217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32485221 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32485223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9499;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32485231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4409;AVGPOST=0.9964;RSQ=0.9956;ERATE=0.0003;THETA=0.0049;AC=964;AN=2184 GT:DS:GL:BD 0.44139194 0 1 32485235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32485240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32485254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0040;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32485274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0060;AVGPOST=0.9992;RSQ=0.9356;ERATE=0.0008;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32485322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7849;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32485325 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9744;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32485394 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.4316;AVGPOST=0.9896;RSQ=0.9869;ERATE=0.0054;THETA=0.0008;AC=948;AN=2184 GT:DS:GL:BD 0.43406594 0 1 32485401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.884;LDAF=0.0170;AVGPOST=0.9920;RSQ=0.8300;ERATE=0.0025;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32485430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.726;LDAF=0.0145;AVGPOST=0.9822;RSQ=0.5378;ERATE=0.0040;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32485446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4888;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5878;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32485503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.951;LDAF=0.3890;AVGPOST=0.9734;RSQ=0.9645;ERATE=0.0032;THETA=0.0007;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 32485514 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0155;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32485556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7604;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9676;ERATE=0.0006;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32485585 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0020;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32485653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0036;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32485655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2614;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 32485691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7770;ERATE=0.0014;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32485717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32485737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3094;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0007;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 32485742 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32485761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32485900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0309;AVGPOST=0.9980;RSQ=0.9761;ERATE=0.0007;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32485921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9680;ERATE=0.0009;THETA=0.0043;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32485960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7950;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32485961 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32485968 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32485989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.4090;AVGPOST=0.9870;RSQ=0.9812;ERATE=0.0027;THETA=0.0009;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 32486063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0059;AVGPOST=0.9973;RSQ=0.8562;ERATE=0.0014;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32486143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.949;LDAF=0.2205;AVGPOST=0.9669;RSQ=0.9473;ERATE=0.0053;THETA=0.0007;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 32486168 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.3163;AVGPOST=0.9638;RSQ=0.9521;ERATE=0.0059;THETA=0.0058;AC=700;AN=2184 GT:DS:GL:BD 0.32051283 0 1 32486172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.938;LDAF=0.0301;AVGPOST=0.9932;RSQ=0.9161;ERATE=0.0039;THETA=0.0018;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32486188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7493;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32486207 MERGED_DEL_2_5711 G ADELA . . SV;BAVGPOST=0.997;BRSQ=0.174;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.4082;ERATE=0.0005;THETA=0.0022;CIEND=-71;82;CIPOS=-93;64;END=152282330;SOURCE=BreakDancer_152278057_152282330;SVTYPE=DEL;AC=3;AN GT:DS:GL:BD 0.00137363 0 1 32486403 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.929;LDAF=0.3539;AVGPOST=0.9625;RSQ=0.9495;ERATE=0.0033;THETA=0.0003;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 32487035 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.913;LDAF=0.1896;AVGPOST=0.9782;RSQ=0.9353;ERATE=0.0006;THETA=0.0021;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 32487202 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.781;LDAF=0.2601;AVGPOST=0.8351;RSQ=0.6463;ERATE=0.0211;THETA=0.0006;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 32487752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.591;LDAF=0.0053;AVGPOST=0.9933;RSQ=0.4767;ERATE=0.0008;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32487768 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0164;AVGPOST=0.9895;RSQ=0.7697;ERATE=0.0008;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32487835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5602;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32487907 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0153;AVGPOST=0.9966;RSQ=0.9203;ERATE=0.0008;THETA=0.0012;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32487988 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32487992 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32488014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0140;AVGPOST=0.9975;RSQ=0.9474;ERATE=0.0027;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32488032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.5767;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32488067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4043;AVGPOST=0.9947;RSQ=0.9923;ERATE=0.0054;THETA=0.0053;AC=887;AN=2184 GT:DS:GL:BD 0.40613553 0 1 32488075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0114;AVGPOST=0.9968;RSQ=0.8909;ERATE=0.0007;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32488106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32488133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32488151 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32488156 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3951;AVGPOST=0.9980;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 32488187 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0025;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32488229 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32488242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0031;AVGPOST=0.9977;RSQ=0.7209;ERATE=0.0024;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32488256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3111;AVGPOST=0.9982;RSQ=0.9976;ERATE=0.0003;THETA=0.0035;AC=680;AN=2184 GT:DS:GL:BD 0.31135532 0 1 32488266 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.1628;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32488298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0212;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0003;THETA=0.0013;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32488310 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9731;ERATE=0.0004;THETA=0.0065;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32488321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32488337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32488369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2686;AVGPOST=0.9943;RSQ=0.9913;ERATE=0.0021;THETA=0.0006;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 32488378 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7765;ERATE=0.0011;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32488429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9843;ERATE=0.0003;THETA=0.0027;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32488456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.899;LDAF=0.2734;AVGPOST=0.9748;RSQ=0.9517;ERATE=0.0009;THETA=0.0003;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 32488516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0117;AVGPOST=0.9992;RSQ=0.9685;ERATE=0.0004;THETA=0.0019;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32488548 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.926;LDAF=0.2469;AVGPOST=0.9721;RSQ=0.9474;ERATE=0.0019;THETA=0.0061;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 32488611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0144;AVGPOST=0.9972;RSQ=0.9304;ERATE=0.0004;THETA=0.0007;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32488671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.939;LDAF=0.2049;AVGPOST=0.9752;RSQ=0.9419;ERATE=0.0036;THETA=0.0003;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 32488693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.3366;AVGPOST=0.9821;RSQ=0.9750;ERATE=0.0061;THETA=0.0004;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 32488718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32488865 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8689;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32488881 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32488888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32488891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0173;AVGPOST=0.9989;RSQ=0.9744;ERATE=0.0004;THETA=0.0068;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32488919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32488921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32488933 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0574;AVGPOST=0.9989;RSQ=0.9931;ERATE=0.0004;THETA=0.0009;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 32489128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9593;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32489153 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0071;AVGPOST=0.9985;RSQ=0.9168;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32489218 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32489424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32489426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6678;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32489523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2768;AVGPOST=0.9954;RSQ=0.9910;ERATE=0.0006;THETA=0.0009;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 32489576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32489599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32489617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32489890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0583;AVGPOST=0.9977;RSQ=0.9845;ERATE=0.0007;THETA=0.0017;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32489918 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1189;ERATE=0.0005;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32490126 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8051;ERATE=0.0018;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32490215 . G GT 1582 PASS INDEL;BAVGPOST=0.956;BRSQ=0.700;LDAF=0.0883;AVGPOST=0.9326;RSQ=0.6480;ERATE=0.0205;THETA=0.0008;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 32490347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4410;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32490430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3302;AVGPOST=0.9927;RSQ=0.9880;ERATE=0.0008;THETA=0.0012;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 32490435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32490444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7361;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32490445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.895;LDAF=0.0082;AVGPOST=0.9966;RSQ=0.8623;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32490479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32490532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32490577 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8299;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32490679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9661;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32490722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32490763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9710;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32490774 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6991;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32490779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8850;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32490942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7027;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32491025 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2665;AVGPOST=0.9957;RSQ=0.9918;ERATE=0.0004;THETA=0.0015;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 32491069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32491105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0008;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32491228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32491312 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5041;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32491400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9476;ERATE=0.0003;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32491455 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7703;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32491515 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7021;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32491765 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7227;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32491779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32491780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8280;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32491815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32491859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8618;ERATE=0.0003;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32491929 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32491977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0120;AVGPOST=0.9983;RSQ=0.9455;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32492108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8571;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32492136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32492154 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32492167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9478;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32492170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0102;AVGPOST=0.9977;RSQ=0.8962;ERATE=0.0004;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32492172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32492191 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0140;AVGPOST=0.9984;RSQ=0.9507;ERATE=0.0008;THETA=0.0017;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32492199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8344;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32492308 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32492453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32492472 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6746;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32492482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7074;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32492483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6692;ERATE=0.0003;THETA=0.0058;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32492500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8911;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32492536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8209;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32492538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0092;AVGPOST=0.9988;RSQ=0.9478;ERATE=0.0003;THETA=0.0034;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32492561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8640;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32492665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9188;ERATE=0.0004;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32492755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32492757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0335;AVGPOST=0.9983;RSQ=0.9806;ERATE=0.0004;THETA=0.0009;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32492773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32492900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0086;AVGPOST=0.9987;RSQ=0.9477;ERATE=0.0004;THETA=0.0045;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32492908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.958;LDAF=0.2412;AVGPOST=0.9780;RSQ=0.9566;ERATE=0.0010;THETA=0.0013;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 32492994 . AGAC A 122 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5634;ERATE=0.0004;THETA=0.0182;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9769;ERATE=0.0004;THETA=0.0093;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32493171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0005;THETA=0.0114;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32493232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9299;ERATE=0.0004;THETA=0.0199;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32493267 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0005;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32493399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9747;ERATE=0.0004;THETA=0.0076;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32493400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0106;AVGPOST=0.9985;RSQ=0.9478;ERATE=0.0006;THETA=0.0058;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32493403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0191;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6323;ERATE=0.0003;THETA=0.0102;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0007;THETA=0.0159;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32493570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0003;THETA=0.0161;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32493788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.948;LDAF=0.3198;AVGPOST=0.9652;RSQ=0.9470;ERATE=0.0057;THETA=0.0057;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 32493802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493840 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8912;ERATE=0.0003;THETA=0.0105;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32493842 . C CT 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4433;ERATE=0.0005;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32493911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9608;ERATE=0.0003;THETA=0.0051;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32494040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.5751;AVGPOST=0.9869;RSQ=0.9805;ERATE=0.0010;THETA=0.0004;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 32494190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8504;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32494209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.961;LDAF=0.5234;AVGPOST=0.9820;RSQ=0.9734;ERATE=0.0015;THETA=0.0004;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 32494211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.6334;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32494465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.973;LDAF=0.5549;AVGPOST=0.9830;RSQ=0.9766;ERATE=0.0005;THETA=0.0003;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 32494533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.972;LDAF=0.4959;AVGPOST=0.9817;RSQ=0.9750;ERATE=0.0010;THETA=0.0007;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 32494534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.8043;ERATE=0.0005;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32494540 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5734;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 32494585 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0223;AVGPOST=0.9988;RSQ=0.9778;ERATE=0.0005;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32494754 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32494811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5030;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32494834 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0065;AVGPOST=0.9979;RSQ=0.8849;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32495027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9679;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32495063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6732;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32495426 . AT A 791 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0005;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32495448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7139;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32495455 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5038;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32495530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0250;AVGPOST=0.9994;RSQ=0.9901;ERATE=0.0004;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32495562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7271;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32495584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0044;AVGPOST=0.9993;RSQ=0.9230;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32495716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6816;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32495744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9248;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32495747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6991;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32495846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32495853 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0004;THETA=0.0012;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32495954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0042;AVGPOST=0.9932;RSQ=0.3510;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32496065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.619;LDAF=0.0046;AVGPOST=0.9968;RSQ=0.7548;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32496104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0050;AVGPOST=0.9968;RSQ=0.7239;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32496153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5656;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32496241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1200;AVGPOST=0.9987;RSQ=0.9948;ERATE=0.0004;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 32496250 . GT G 4407 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0229;AVGPOST=0.9979;RSQ=0.9660;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32496318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0243;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0003;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32496431 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32496466 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32496468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.7101;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32496481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9262;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32496526 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5246;AVGPOST=0.9980;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 32496616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32496639 . AG A 41 PASS INDEL;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7233;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32496699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5012;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0006;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 32496921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7896;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32496947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8286;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32496984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0153;AVGPOST=0.9994;RSQ=0.9819;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32496996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6952;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32497053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32497117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0256;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32497122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0219;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32497201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5520;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0008;THETA=0.0004;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 32497400 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5492;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32497463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0203;AVGPOST=0.9990;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32497494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7231;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32497506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32497514 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32497542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0586;AVGPOST=0.9983;RSQ=0.9885;ERATE=0.0004;THETA=0.0003;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 32497606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32497662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0257;AVGPOST=0.9991;RSQ=0.9874;ERATE=0.0004;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32497694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32497803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0201;AVGPOST=0.9996;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32497828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9213;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32497948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8531;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32497975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9610;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32498008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32498105 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32498157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32498206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1193;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32498280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32498313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9525;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32498381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0219;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32498397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6812;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32498428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5809;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 32498573 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32498643 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.9157;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32498893 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8944;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32498902 . ATG A 52 PASS INDEL;BAVGPOST=0.992;BRSQ=0.649;LDAF=0.0198;AVGPOST=0.9771;RSQ=0.5520;ERATE=0.0060;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32498921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.630;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8345;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32499068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32499073 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9262;ERATE=0.0003;THETA=0.0024;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32499085 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7512;ERATE=0.0005;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32499425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.5161;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32499437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0038;AVGPOST=0.9973;RSQ=0.6761;ERATE=0.0008;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32499441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32499460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32499603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4859;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32499859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8620;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32499892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8538;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32499907 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0298;AVGPOST=0.9990;RSQ=0.9872;ERATE=0.0003;THETA=0.0013;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32500088 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7099;ERATE=0.0006;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32500090 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9532;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32500103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500168 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32500182 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.905;LDAF=0.0596;AVGPOST=0.9933;RSQ=0.9527;ERATE=0.0005;THETA=0.0008;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32500250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6466;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500351 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6846;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32500523 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500530 . A AG 215 PASS INDEL;BAVGPOST=0.996;BRSQ=0.675;LDAF=0.0074;AVGPOST=0.9948;RSQ=0.7456;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32500759 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.600;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3858;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32500798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32501206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0132;AVGPOST=0.9961;RSQ=0.8758;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32501208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0169;AVGPOST=0.9994;RSQ=0.9845;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32501259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7981;ERATE=0.0006;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32501289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32501311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32501343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0004;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32501682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32501701 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0051;AVGPOST=0.9971;RSQ=0.7960;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32501789 . GGA G 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6155;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32501847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32501881 . A AG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5335;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32501972 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0178;AVGPOST=0.9980;RSQ=0.9628;ERATE=0.0004;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32502062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32502286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32502403 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8768;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32502532 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9396;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32502720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9385;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32502786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32502909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0065;AVGPOST=0.9967;RSQ=0.8062;ERATE=0.0005;THETA=0.0011;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32503120 rs10654610 A ACT 6775 PASS INDEL;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0460;AVGPOST=0.9984;RSQ=0.9859;ERATE=0.0004;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32503163 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6307;ERATE=0.0005;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32503180 . ATTAT A 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6938;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32503334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7896;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32503442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0466;AVGPOST=0.9993;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32503662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.6356;ERATE=0.0010;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32503706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32503788 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0055;AVGPOST=0.9980;RSQ=0.8433;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32503952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5790;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32504143 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4412;AVGPOST=0.9910;RSQ=0.9868;ERATE=0.0006;THETA=0.0010;AC=961;AN=2184 GT:DS:GL:BD 0.44001833 0 1 32504167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32504380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32504386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.9718;AVGPOST=0.9954;RSQ=0.9392;ERATE=0.0008;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32506640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4702;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 32506696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32506834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8147;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32507004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32507087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32507156 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0477;AVGPOST=0.9996;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 32507197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9814;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32507207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0096;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32507329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5570;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32507404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6134;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0005;THETA=0.0004;AC=1339;AN=2184 GT:DS:GL:BD 0.61309522 1 1 32507441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5230;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0005;THETA=0.0007;AC=1142;AN=2184 GT:DS:GL:BD 0.52289379 1 1 32507558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32507592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5865;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32507698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6585;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32507771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.3813;AVGPOST=0.9875;RSQ=0.9778;ERATE=0.0030;THETA=0.0004;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 32507861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9721;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32508073 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9557;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32508124 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508364 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32508493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0201;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32508517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0216;AVGPOST=0.9997;RSQ=0.9934;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32508691 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4513;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32508812 rs11285294 AG A 104643 PASS INDEL;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.9649;AVGPOST=0.9899;RSQ=0.9006;ERATE=0.0012;THETA=0.0003;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 32508917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7432;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32509006 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9391;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32509113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9722;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32509136 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32509263 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32509339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32509362 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32509424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9997;RSQ=0.9839;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32509521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9721;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32509533 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7458;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32509688 rs5777988 G GC 12716 PASS INDEL;BAVGPOST=0.945;BRSQ=0.843;LDAF=0.1795;AVGPOST=0.9708;RSQ=0.9294;ERATE=0.0009;THETA=0.0003;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 32509781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32509866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9720;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32509869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0081;AVGPOST=0.9981;RSQ=0.9097;ERATE=0.0009;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32509870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9721;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0004;THETA=0.0005;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32509912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.833;LDAF=0.9176;AVGPOST=0.9707;RSQ=0.8538;ERATE=0.0342;THETA=0.0003;AC=2015;AN=2184 GT:DS:GL:BD 0.92261904 1 1 32509914 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6366;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=1390;AN=2184 GT:DS:GL:BD 0.63644689 1 1 32510006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32510098 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32510319 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9528;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32510322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4822;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0005;THETA=0.0004;AC=1052;AN=2184 GT:DS:GL:BD 0.48168498 0 1 32510395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9998;RSQ=0.9498;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32510522 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32510537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32510558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6261;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0005;AC=1367;AN=2184 GT:DS:GL:BD 0.62591577 1 1 32510570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32510594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32510608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9721;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 32510639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32510742 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32510763 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32510787 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32510821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32510840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32511095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32511098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0119;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32511169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0361;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32511542 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9741;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32511570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4684;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=1024;AN=2184 GT:DS:GL:BD 0.46886447 0 1 32511625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4271;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 32511663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5553;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511746 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4273;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0005;THETA=0.0008;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 32511769 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32511799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32511851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32512115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32512184 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32512186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0207;AVGPOST=0.9977;RSQ=0.9548;ERATE=0.0005;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32512211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7065;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32512355 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32512468 . G GA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4665;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32512496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32512796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32512816 . T TA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6852;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32513044 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2271;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 32513145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4712;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 32513227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5947;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32513445 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32513662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5883;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32513664 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32513695 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5190;AVGPOST=0.9950;RSQ=0.9933;ERATE=0.0008;THETA=0.0004;AC=1133;AN=2184 GT:DS:GL:BD 0.51877290 1 1 32513715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0050;AVGPOST=0.9979;RSQ=0.8429;ERATE=0.0004;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32513786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.7504;AVGPOST=0.9896;RSQ=0.9788;ERATE=0.0011;THETA=0.0003;AC=1643;AN=2184 GT:DS:GL:BD 0.75228935 1 1 32514161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5979;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32514356 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.4048;AVGPOST=0.9974;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=885;AN=2184 GT:DS:GL:BD 0.40521979 0 1 32514366 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.4703;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 32514369 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9871;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32514416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8793;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32514472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32514494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4718;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0005;THETA=0.0006;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 32514512 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4710;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 32514583 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0049;AVGPOST=0.9974;RSQ=0.7879;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32514615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4807;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0005;THETA=0.0003;AC=1049;AN=2184 GT:DS:GL:BD 0.48031136 0 1 32514649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7891;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32514718 . CA C 180 PASS INDEL;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0034;AVGPOST=0.9978;RSQ=0.7557;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32514730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32514819 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32514854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6980;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32515171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32515174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32515181 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2390;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=522;AN=2184 GT:DS:GL:BD 0.23901099 0 1 32515334 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7658;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=1674;AN=2184 GT:DS:GL:BD 0.76648355 1 1 32515336 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6855;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32515422 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32515632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32515745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7727;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32515752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7175;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32515759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32515760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32515949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0343;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32516054 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5203;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=1136;AN=2184 GT:DS:GL:BD 0.52014655 1 1 32516102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7581;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=1656;AN=2184 GT:DS:GL:BD 0.75824177 1 1 32516336 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32516433 . CCTA C 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.6051;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32516439 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32516491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0362;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32516504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8508;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32516575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0197;AVGPOST=0.9984;RSQ=0.9724;ERATE=0.0004;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32516584 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0137;AVGPOST=0.9990;RSQ=0.9781;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32516619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32516673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9541;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32516731 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32516782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9598;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 32516834 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32516842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9776;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32516972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517005 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9597;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 32517017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5076;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32517044 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0003;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32517092 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32517106 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9597;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=2096;AN=2184 GT:DS:GL:BD 0.95970696 1 1 32517153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5077;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32517191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32517212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0375;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32517251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517284 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32517337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6935;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9485;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32517462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9735;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32517524 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9237;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 32517530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32517574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32517576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8178;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517614 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0608;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 32517627 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32517653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7396;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517693 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6185;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517696 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32517727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9886;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32517777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32517846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32517931 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0069;AVGPOST=0.9987;RSQ=0.9268;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32517972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32518011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3390;AVGPOST=0.9982;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 32518012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32518017 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5402;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0309;AVGPOST=0.9994;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32518206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0242;AVGPOST=0.9989;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32518305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32518542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32518551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518687 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9337;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32518714 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0279;AVGPOST=0.9979;RSQ=0.9756;ERATE=0.0005;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32518730 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9996;RSQ=0.9811;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32518760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8126;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32518764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518782 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32518845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9739;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32518859 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4693;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32518863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0067;AVGPOST=0.9978;RSQ=0.8973;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32518935 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.4140;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=904;AN=2184 GT:DS:GL:BD 0.41391942 0 1 32518951 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0219;AVGPOST=0.9995;RSQ=0.9896;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32518975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3368;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0006;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 32518986 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32519047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0091;AVGPOST=0.9992;RSQ=0.9622;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32519083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4841;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32519084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0096;AVGPOST=0.9978;RSQ=0.9114;ERATE=0.0006;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32519100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8393;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32519162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.550;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5897;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32519186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5076;AVGPOST=0.9965;RSQ=0.9941;ERATE=0.0011;THETA=0.0006;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32519187 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.9537;AVGPOST=0.9984;RSQ=0.9869;ERATE=0.0005;THETA=0.0005;AC=2084;AN=2184 GT:DS:GL:BD 0.95421243 1 1 32519355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4468;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32519373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5485;ERATE=0.0009;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32519378 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0362;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32519426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3368;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 32519443 . TA T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.6768;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32519465 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0030;AVGPOST=0.9966;RSQ=0.5806;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32519469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8161;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32519554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9384;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32519603 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9664;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32519719 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32519867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32519877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32519953 . G GC 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8056;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32520037 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7868;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32520051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.6787;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32520083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32520117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9455;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32520242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8334;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32520340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3560;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 32520365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0308;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32520366 . CCTAA C 1200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9062;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32520407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32520425 . TAGG T 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7433;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32520538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0306;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32520916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9589;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32520929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32520969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32521027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32521058 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32521060 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.802;LDAF=0.0716;AVGPOST=0.9617;RSQ=0.7763;ERATE=0.0237;THETA=0.0007;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 32521152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32521277 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6527;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32521304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5076;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32521312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0044;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32521331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32521405 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32521454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0298;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32521494 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0056;AVGPOST=0.9934;RSQ=0.5092;ERATE=0.0008;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32522614 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0171;AVGPOST=0.9958;RSQ=0.9040;ERATE=0.0007;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32522627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0099;AVGPOST=0.9934;RSQ=0.7334;ERATE=0.0005;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32522665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.3691;AVGPOST=0.9874;RSQ=0.9803;ERATE=0.0010;THETA=0.0005;AC=808;AN=2184 GT:DS:GL:BD 0.36996338 0 1 32522676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0978;AVGPOST=0.9989;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 32522959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0140;AVGPOST=0.9995;RSQ=0.9828;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32522983 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1701;AVGPOST=0.9986;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 32523006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32523094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7967;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32523153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32523199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32523210 . GT G 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7117;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32523260 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1636;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 32523436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7813;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32523491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.6936;ERATE=0.0013;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32523523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32523573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0093;AVGPOST=0.9986;RSQ=0.9383;ERATE=0.0003;THETA=0.0026;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32523624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5338;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32523701 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32523873 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6257;AVGPOST=0.9960;RSQ=0.9938;ERATE=0.0004;THETA=0.0003;AC=1365;AN=2184 GT:DS:GL:BD 0.62500000 1 1 32524493 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9795;ERATE=0.0002;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32524559 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0128;AVGPOST=0.9948;RSQ=0.8569;ERATE=0.0004;THETA=0.0024;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32524563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0002;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32524591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5034;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32524917 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5548;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32524926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1977;AVGPOST=0.9953;RSQ=0.9907;ERATE=0.0003;THETA=0.0018;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 32525197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.946;LDAF=0.0382;AVGPOST=0.9971;RSQ=0.9769;ERATE=0.0003;THETA=0.0062;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32525264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9065;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32525270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2929;AVGPOST=0.9962;RSQ=0.9937;ERATE=0.0006;THETA=0.0005;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 32525271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32525324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7491;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32525356 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9691;ERATE=0.0003;THETA=0.0033;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32525384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6619;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32525505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32525856 . TA T 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7238;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32525875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9409;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32525986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32526034 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8785;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32526056 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9195;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32526117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1949;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 32526333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7782;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32526505 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1953;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 32526539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8919;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32526615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1318;AVGPOST=0.9942;RSQ=0.9827;ERATE=0.0004;THETA=0.0003;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32526814 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6781;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 32526831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32526854 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32526905 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0874;AVGPOST=0.9990;RSQ=0.9948;ERATE=0.0003;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 32526963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527043 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9411;ERATE=0.0002;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32527089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32527112 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7414;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32527158 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3127;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=684;AN=2184 GT:DS:GL:BD 0.31318682 0 1 32527255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0002;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32527290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1861;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0003;THETA=0.0001;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 32527318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.7297;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32527363 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32527565 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0194;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0002;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32527568 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32527586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9228;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32527677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527821 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5991;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8366;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32527930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527940 . CA C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4908;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32527987 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32528033 . GTTCCC G 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.5118;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32528040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.3287;AVGPOST=0.9934;RSQ=0.9873;ERATE=0.0013;THETA=0.0006;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 32528049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.3304;AVGPOST=0.9972;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 32528051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.747;LDAF=0.0040;AVGPOST=0.9970;RSQ=0.7280;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32528068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0101;AVGPOST=0.9989;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32528087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0262;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32528214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9859;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32528216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3174;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0005;THETA=0.0002;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 32528316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32528371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0324;AVGPOST=0.9991;RSQ=0.9911;ERATE=0.0003;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32528375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32528414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2923;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 32528451 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32528474 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4762;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32528486 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2272;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0006;THETA=0.0001;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 32528559 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5706;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32528573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6271;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=1371;AN=2184 GT:DS:GL:BD 0.62774724 1 1 32528640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7467;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32528644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32528646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32528679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6193;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32528726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9193;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32528773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2922;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 32528889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6784;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32529079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6347;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=1386;AN=2184 GT:DS:GL:BD 0.63461536 1 1 32529128 . C CT 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32529136 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6585;AVGPOST=0.9982;RSQ=0.9963;ERATE=0.0006;THETA=0.0003;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 32529212 . G GCA 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0005;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32529305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.904;LDAF=0.0184;AVGPOST=0.9977;RSQ=0.9543;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32529307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2452;AVGPOST=0.9985;RSQ=0.9967;ERATE=0.0004;THETA=0.0006;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 32529424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7969;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529539 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0258;AVGPOST=0.9992;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32529567 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32529608 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7267;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8916;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32529651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32529674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0292;AVGPOST=0.9986;RSQ=0.9816;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32529851 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2922;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0005;THETA=0.0033;AC=637;AN=2184 GT:DS:GL:BD 0.29166666 0 1 32529862 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7111;ERATE=0.0005;THETA=0.0048;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32529952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32530023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0262;AVGPOST=0.9989;RSQ=0.9837;ERATE=0.0004;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32530079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0035;AVGPOST=0.9988;RSQ=0.8654;ERATE=0.0005;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32530174 rs112332188 CT C 4923 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0270;AVGPOST=0.9962;RSQ=0.9451;ERATE=0.0006;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32530216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32530218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8975;ERATE=0.0004;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32530281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32530329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32530356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32530418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6451;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32530473 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0268;AVGPOST=0.9984;RSQ=0.9817;ERATE=0.0004;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32530514 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5826;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32530531 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32530590 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32530702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0067;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32530867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32530995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32531043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32531057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32531077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32531080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32531081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32531126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32531178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32531257 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32531364 . TCTG T 618 PASS INDEL;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9724;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32531437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9691;ERATE=0.0003;THETA=0.0037;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32531439 rs58202947 GCTAT G 28026 PASS INDEL;BAVGPOST=0.981;BRSQ=0.956;LDAF=0.2824;AVGPOST=0.9664;RSQ=0.9329;ERATE=0.0091;THETA=0.0005;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 32531555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.9995;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=2183;AN=2184 GT:DS:GL:BD 0.99954212 1 1 32531579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32531601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8663;ERATE=0.0004;THETA=0.0101;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32531798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32531900 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.6423;AVGPOST=0.9876;RSQ=0.9785;ERATE=0.0014;THETA=0.0003;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 32531906 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32531930 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32531973 . GTA G 430 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7605;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32532114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7399;AVGPOST=0.9956;RSQ=0.9907;ERATE=0.0006;THETA=0.0005;AC=1617;AN=2184 GT:DS:GL:BD 0.74038464 1 1 32532588 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0122;AVGPOST=0.9990;RSQ=0.9667;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32532841 . GC G 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32532907 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1065;AVGPOST=0.9986;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32532983 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8431;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32533041 . G GT 218 PASS INDEL;BAVGPOST=0.964;BRSQ=0.491;LDAF=0.0708;AVGPOST=0.9027;RSQ=0.3911;ERATE=0.0281;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32533060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.437;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.3348;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32533143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6511;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32533267 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0503;AVGPOST=0.9989;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32533611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32533646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6684;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32533650 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32533731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0053;AVGPOST=0.9961;RSQ=0.7302;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32533959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6247;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32534283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5719;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32534301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9364;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32534488 rs71744277 A AC 27947 PASS INDEL;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.2125;AVGPOST=0.9965;RSQ=0.9931;ERATE=0.0004;THETA=0.0003;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 32534576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1697;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0002;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 32534674 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32534726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32534759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9709;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32534836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0075;AVGPOST=0.9983;RSQ=0.8969;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32534839 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32534982 . GTTTA G 63 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32535167 . TATTTA T 246 PASS INDEL;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32535170 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9661;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32535204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2114;AVGPOST=0.9985;RSQ=0.9964;ERATE=0.0005;THETA=0.0009;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 32535221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6844;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32535303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6220;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32535314 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4955;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32535336 . CTT C 167 PASS INDEL;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5208;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32535381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2112;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 32535418 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2592;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0005;THETA=0.0002;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 32535657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4150;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32535786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5826;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32535872 . A AC 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.2943;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32536004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8104;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32536101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7080;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32536216 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9464;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32536507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2120;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0005;THETA=0.0005;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 32536522 . CATG C 357 PASS INDEL;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6863;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32536531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4974;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32536654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32536718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6533;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32536872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7349;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32536938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9659;AVGPOST=0.9972;RSQ=0.9661;ERATE=0.0003;THETA=0.0007;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 32537442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5769;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32537477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2122;AVGPOST=0.9973;RSQ=0.9939;ERATE=0.0005;THETA=0.0002;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 32537486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0054;AVGPOST=0.9978;RSQ=0.8417;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32537516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0046;AVGPOST=0.9977;RSQ=0.8043;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32537540 . TTTAA T 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32537557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2114;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 32537606 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2111;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 32537695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32537833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8332;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32537922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6870;AVGPOST=0.9967;RSQ=0.9937;ERATE=0.0009;THETA=0.0001;AC=1501;AN=2184 GT:DS:GL:BD 0.68727106 1 1 32538023 . TC T 115 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32538041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32538063 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6752;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32538128 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32538179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32538261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1995;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0007;THETA=0.0002;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 32538273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0186;AVGPOST=0.9994;RSQ=0.9847;ERATE=0.0004;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32538304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9989;RSQ=0.9704;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32538447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7332;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32538499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6096;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32538522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5332;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32538732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.647;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.6675;ERATE=0.0003;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32538752 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6362;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32538801 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7617;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32538879 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6467;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32538962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32538999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1994;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 32539014 . A AC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4513;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32539037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8386;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32539125 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7569;AVGPOST=0.9963;RSQ=0.9925;ERATE=0.0006;THETA=0.0002;AC=1657;AN=2184 GT:DS:GL:BD 0.75869966 1 1 32539131 . A AT 2408 PASS INDEL;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0465;AVGPOST=0.9975;RSQ=0.9770;ERATE=0.0005;THETA=0.0005;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32539133 rs68043614 TG T 24884 PASS INDEL;BAVGPOST=0.936;BRSQ=0.331;LDAF=0.9065;AVGPOST=0.8712;RSQ=0.3965;ERATE=0.0165;THETA=0.0003;AC=2062;AN=2184 GT:DS:GL:BD 0.94413918 1 1 32539301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.643;LDAF=0.4652;AVGPOST=0.7874;RSQ=0.5867;ERATE=0.0992;THETA=0.0004;AC=1011;AN=2184 GT:DS:GL:BD 0.46291208 0 1 32539302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.554;LDAF=0.0081;AVGPOST=0.9883;RSQ=0.4513;ERATE=0.0010;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32539383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.867;LDAF=0.0221;AVGPOST=0.9983;RSQ=0.9701;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32539404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.965;LDAF=0.2032;AVGPOST=0.9860;RSQ=0.9692;ERATE=0.0020;THETA=0.0002;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 32539446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.334;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4238;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32539506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.593;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.8978;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32539526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1454;AVGPOST=0.9975;RSQ=0.9923;ERATE=0.0003;THETA=0.0002;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 32539528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32539539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0026;AVGPOST=0.9963;RSQ=0.4992;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32539556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0190;AVGPOST=0.9993;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32539615 . A AT 199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0022;AVGPOST=0.9969;RSQ=0.4476;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32539694 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32539795 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0113;AVGPOST=0.9992;RSQ=0.9677;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32539857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8693;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32539904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9995;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32540048 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8440;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32540288 . GT G 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5754;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32540360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0669;AVGPOST=0.9974;RSQ=0.9851;ERATE=0.0003;THETA=0.0002;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32540388 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32540494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2075;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0005;THETA=0.0002;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 32540504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9996;RSQ=0.9910;ERATE=0.0003;THETA=0.0002;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32540531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0466;AVGPOST=0.9992;RSQ=0.9914;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32540541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7372;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32540633 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0245;AVGPOST=0.9992;RSQ=0.9876;ERATE=0.0004;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32540733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0094;AVGPOST=0.9990;RSQ=0.9638;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32540796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8728;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32540858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32540921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5462;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32540928 . G GC 5018 PASS INDEL;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0604;AVGPOST=0.9965;RSQ=0.9753;ERATE=0.0006;THETA=0.0002;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 32541031 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9360;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32541039 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32541064 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2002;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0004;THETA=0.0002;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 32541141 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32541384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5263;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32541541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7058;ERATE=0.0011;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32541570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32541572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0004;THETA=0.0001;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32541659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0029;AVGPOST=0.9991;RSQ=0.8871;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32541660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32541683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6965;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=1522;AN=2184 GT:DS:GL:BD 0.69688642 1 1 32541722 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32541724 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8614;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32541822 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32541824 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2002;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 32541834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7344;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=1605;AN=2184 GT:DS:GL:BD 0.73489010 1 1 32541847 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7355;AVGPOST=0.9968;RSQ=0.9933;ERATE=0.0007;THETA=0.0003;AC=1607;AN=2184 GT:DS:GL:BD 0.73580587 1 1 32541917 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.2078;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0002;AC=452;AN=2184 GT:DS:GL:BD 0.20695971 0 1 32541920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8581;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32541942 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32542012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32542022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8176;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32542077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6204;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32542099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7351;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0004;THETA=0.0002;AC=1607;AN=2184 GT:DS:GL:BD 0.73580587 1 1 32542108 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32542135 . AAC A 1562 PASS INDEL;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0112;AVGPOST=0.9972;RSQ=0.8928;ERATE=0.0009;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32542164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0015;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32542244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3341;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0005;THETA=0.0002;AC=731;AN=2184 GT:DS:GL:BD 0.33470696 0 1 32542257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2086;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 32542506 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32542523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32542569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0767;AVGPOST=0.9963;RSQ=0.9816;ERATE=0.0005;THETA=0.0006;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32542570 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32542599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1826;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0004;THETA=0.0002;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 32542605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7430;AVGPOST=0.9962;RSQ=0.9925;ERATE=0.0004;THETA=0.0002;AC=1623;AN=2184 GT:DS:GL:BD 0.74313188 1 1 32542619 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7927;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32542677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32542709 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32542799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1422;AVGPOST=0.9986;RSQ=0.9963;ERATE=0.0004;THETA=0.0025;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 32542813 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7546;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32543164 . G GA 97 PASS INDEL;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32543211 . CACA C 715 PASS INDEL;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.8011;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32543249 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7700;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32543310 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.588;LDAF=0.0536;AVGPOST=0.9486;RSQ=0.5966;ERATE=0.0240;THETA=0.0006;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 32543389 rs35217537 G GA 18044 PASS INDEL;BAVGPOST=0.980;BRSQ=0.964;LDAF=0.3212;AVGPOST=0.9622;RSQ=0.9316;ERATE=0.0093;THETA=0.0006;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 32543397 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8912;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32543462 . C CA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5351;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32543463 . AC A 500 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0045;AVGPOST=0.9987;RSQ=0.8814;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32543660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9134;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32543708 . A AC 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32543754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8845;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32543761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0117;AVGPOST=0.9983;RSQ=0.9436;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32543995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0030;AVGPOST=0.9962;RSQ=0.5550;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32544001 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.794;LDAF=0.9869;AVGPOST=0.9922;RSQ=0.7727;ERATE=0.0007;THETA=0.0003;AC=2158;AN=2184 GT:DS:GL:BD 0.98809522 1 1 32544046 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0037;AVGPOST=0.9975;RSQ=0.7519;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32544096 . GA G 11 PASS INDEL;BAVGPOST=0.997;BRSQ=0.403;LDAF=0.0069;AVGPOST=0.9888;RSQ=0.3857;ERATE=0.0023;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32544118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8043;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32544142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.751;LDAF=0.0074;AVGPOST=0.9949;RSQ=0.7717;ERATE=0.0007;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32544210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7109;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32544215 rs56880936 C CA 4150 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0429;AVGPOST=0.9965;RSQ=0.9689;ERATE=0.0006;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 32544234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8683;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32544262 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32544338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9209;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32544357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0342;AVGPOST=0.9992;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32544397 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7322;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32544653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8641;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32544897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0443;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 32544961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4941;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32544973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6245;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32545174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0455;AVGPOST=0.9993;RSQ=0.9922;ERATE=0.0004;THETA=0.0007;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 32545216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4935;AVGPOST=0.9959;RSQ=0.9929;ERATE=0.0008;THETA=0.0003;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 32545265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32545339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9982;RSQ=0.4692;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32545408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.4286;AVGPOST=0.9826;RSQ=0.9733;ERATE=0.0034;THETA=0.0004;AC=939;AN=2184 GT:DS:GL:BD 0.42994505 0 1 32545556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.583;LDAF=0.0075;AVGPOST=0.9891;RSQ=0.4541;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32545614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.719;LDAF=0.0092;AVGPOST=0.9941;RSQ=0.7453;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32545660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9997;RSQ=0.9933;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32545678 rs59134261 A AAAG 44105 PASS INDEL;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.3844;AVGPOST=0.9710;RSQ=0.9508;ERATE=0.0097;THETA=0.0003;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 32545828 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32545898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3221;AVGPOST=0.9987;RSQ=0.9971;ERATE=0.0005;THETA=0.0006;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 32545943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0039;AVGPOST=0.9957;RSQ=0.5948;ERATE=0.0006;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32546146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5136;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 32546149 . C CT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546195 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0216;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32546442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0623;AVGPOST=0.9983;RSQ=0.9902;ERATE=0.0004;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32546476 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4876;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9224;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32546655 . AC A 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32546820 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.551;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6439;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32546933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0617;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 32546948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0613;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32546994 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0350;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0003;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32547013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5136;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 32547072 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6538;ERATE=0.0008;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32547106 . CCT C 131 PASS INDEL;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32547167 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0614;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32547259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32547307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0076;AVGPOST=0.9989;RSQ=0.9489;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32547328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7418;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32547375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9110;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32547489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1102;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 32547723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.7008;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32547778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0613;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32547781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9799;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32547791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5141;AVGPOST=0.9968;RSQ=0.9952;ERATE=0.0005;THETA=0.0006;AC=1122;AN=2184 GT:DS:GL:BD 0.51373625 1 1 32547945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0613;AVGPOST=0.9990;RSQ=0.9937;ERATE=0.0005;THETA=0.0004;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32547962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0614;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32548031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0615;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32548069 . AT A 289 PASS INDEL;BAVGPOST=0.902;BRSQ=0.356;LDAF=0.1100;AVGPOST=0.8628;RSQ=0.4676;ERATE=0.0187;THETA=0.0007;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32548456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.1037;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 32548461 . T TA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7952;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32548481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6562;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32548532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32548574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32548610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5279;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0005;THETA=0.0003;AC=1153;AN=2184 GT:DS:GL:BD 0.52793038 1 1 32548664 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9599;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32548741 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8394;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32548747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32548771 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9626;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32548782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.6962;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32548798 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0033;AVGPOST=0.9948;RSQ=0.4303;ERATE=0.0008;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32548804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1275;AVGPOST=0.9977;RSQ=0.9912;ERATE=0.0005;THETA=0.0002;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 32548864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4814;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32548945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.716;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7319;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32549028 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1234;AVGPOST=0.9992;RSQ=0.9965;ERATE=0.0005;THETA=0.0004;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 32549052 . C CT 200 PASS INDEL;BAVGPOST=0.967;BRSQ=0.462;LDAF=0.0659;AVGPOST=0.9154;RSQ=0.4452;ERATE=0.0167;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32549065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0049;AVGPOST=0.9986;RSQ=0.8809;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32549110 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8629;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32549172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7642;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32549454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32549527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8654;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32549567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9701;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32549675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.9243;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32549983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5277;AVGPOST=0.9945;RSQ=0.9917;ERATE=0.0011;THETA=0.0004;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 32549993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9822;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32549998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6205;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32550145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32550188 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32550273 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0174;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32550274 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5285;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0003;THETA=0.0006;AC=1154;AN=2184 GT:DS:GL:BD 0.52838826 1 1 32550328 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5660;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32550360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7036;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32550504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1029;AVGPOST=0.9975;RSQ=0.9896;ERATE=0.0004;THETA=0.0006;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 32550549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0045;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32550550 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32550586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.812;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8182;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32550676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.5179;AVGPOST=0.9922;RSQ=0.9881;ERATE=0.0005;THETA=0.0002;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 32550797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.5184;AVGPOST=0.9926;RSQ=0.9886;ERATE=0.0004;THETA=0.0007;AC=1132;AN=2184 GT:DS:GL:BD 0.51831502 1 1 32550799 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0294;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0005;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32550839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32550861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0054;AVGPOST=0.9985;RSQ=0.9068;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32550862 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9077;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32550882 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9778;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32551117 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0183;AVGPOST=0.9997;RSQ=0.9936;ERATE=0.0003;THETA=0.0013;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32551146 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0762;AVGPOST=0.9989;RSQ=0.9938;ERATE=0.0003;THETA=0.0045;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32551197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9869;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32551409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5988;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 32551437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6461;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32551683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0063;AVGPOST=0.9985;RSQ=0.9094;ERATE=0.0003;THETA=0.0001;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32551684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0770;AVGPOST=0.9984;RSQ=0.9911;ERATE=0.0003;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 32551686 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32551704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32551779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32551833 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32551913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5931;AVGPOST=0.9982;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 32551924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6717;AVGPOST=0.9957;RSQ=0.9927;ERATE=0.0009;THETA=0.0006;AC=1464;AN=2184 GT:DS:GL:BD 0.67032969 1 1 32551989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5942;AVGPOST=0.9974;RSQ=0.9956;ERATE=0.0006;THETA=0.0023;AC=1298;AN=2184 GT:DS:GL:BD 0.59432232 1 1 32552091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.883;LDAF=0.0125;AVGPOST=0.9979;RSQ=0.9247;ERATE=0.0006;THETA=0.0035;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32552096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3460;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32552107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5293;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32552117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1118;AVGPOST=0.9991;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 32552229 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32552237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32552421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9939;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32552464 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9939;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32552513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1005;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0046;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 32552633 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32552675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0027;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32552710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0072;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32552777 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4464;AVGPOST=0.9951;RSQ=0.9933;ERATE=0.0003;THETA=0.0112;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 32552852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8442;ERATE=0.0003;THETA=0.0053;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32553002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9995;RSQ=0.9904;ERATE=0.0003;THETA=0.0017;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32553155 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9214;ERATE=0.0003;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32553166 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5250;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32553219 . CT C 5289 PASS INDEL;BAVGPOST=0.887;BRSQ=0.819;LDAF=0.5475;AVGPOST=0.8420;RSQ=0.7788;ERATE=0.0305;THETA=0.0005;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 32553386 rs34355632 TG T 48390 PASS INDEL;BAVGPOST=0.956;BRSQ=0.924;LDAF=0.6577;AVGPOST=0.9779;RSQ=0.9651;ERATE=0.0005;THETA=0.0004;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 32553388 . GA G 9851 PASS INDEL;BAVGPOST=0.920;BRSQ=0.872;LDAF=0.5822;AVGPOST=0.8731;RSQ=0.8286;ERATE=0.0148;THETA=0.0003;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 32553390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0434;AVGPOST=0.9977;RSQ=0.9794;ERATE=0.0003;THETA=0.0061;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 32553414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6653;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32553432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.1403;ERATE=0.0003;THETA=0.0063;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32553451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9429;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32553694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5621;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32553779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8243;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32553928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32553983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9218;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32554046 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32554086 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32554132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8757;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32554284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0536;AVGPOST=0.9992;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 32554419 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0111;AVGPOST=0.9995;RSQ=0.9816;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32554446 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0456;AVGPOST=0.9996;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32554522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.8026;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32554584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8800;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32554643 . CCT C 402 PASS INDEL;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5853;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32554725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32554751 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6770;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32554761 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1721;AVGPOST=0.9979;RSQ=0.9942;ERATE=0.0004;THETA=0.0007;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 32554780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32554866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9345;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0004;THETA=0.0006;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 32554938 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9310;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32554985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8687;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32555113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1748;AVGPOST=0.9979;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 32555133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0623;AVGPOST=0.9986;RSQ=0.9904;ERATE=0.0004;THETA=0.0003;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32555242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32555267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0178;AVGPOST=0.9981;RSQ=0.9578;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32555297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0101;AVGPOST=0.9994;RSQ=0.9723;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32555366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32555377 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8362;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32555394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32555469 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32555491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0039;AVGPOST=0.9987;RSQ=0.8606;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32555520 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32555574 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8061;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32555675 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9345;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 32555680 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5709;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32555804 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32555820 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32555887 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32555951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8810;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 32556021 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9345;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=2041;AN=2184 GT:DS:GL:BD 0.93452382 1 1 32556042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32556070 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8807;AVGPOST=0.9988;RSQ=0.9955;ERATE=0.0004;THETA=0.0024;AC=1924;AN=2184 GT:DS:GL:BD 0.88095236 1 1 32556281 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9814;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32556329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32556382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32556390 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.9200;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32556415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32556444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.8877;ERATE=0.0003;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32556531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0120;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32556550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8784;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32556557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5412;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32556841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32556866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8983;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32557023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0022;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32557039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.9085;AVGPOST=0.9997;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=1984;AN=2184 GT:DS:GL:BD 0.90842491 1 1 32557118 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.8437;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0039;AC=1842;AN=2184 GT:DS:GL:BD 0.84340662 1 1 32557148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32557162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7912;AVGPOST=0.9977;RSQ=0.9947;ERATE=0.0006;THETA=0.0005;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 32557336 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6622;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32557452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32557494 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32557644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=0.9988;RSQ=0.9881;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32557650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6087;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32557733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0188;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32557741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9266;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32557762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32557763 . T TATTC 1003 PASS INDEL;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0067;AVGPOST=0.9962;RSQ=0.7852;ERATE=0.0005;THETA=0.0027;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32557769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32557786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32557845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7914;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0005;THETA=0.0006;AC=1727;AN=2184 GT:DS:GL:BD 0.79075092 1 1 32557848 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7985;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32557849 . ACTC A 193 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5448;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32557867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32557929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9941;ERATE=0.0004;THETA=0.0011;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32558067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5677;AVGPOST=0.9964;RSQ=0.9948;ERATE=0.0004;THETA=0.0019;AC=1237;AN=2184 GT:DS:GL:BD 0.56639194 1 1 32558077 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7719;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32558176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0016;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32558237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32558405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8172;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32558601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32558604 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32558785 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4970;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0004;THETA=0.0009;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 32558823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0041;AVGPOST=0.9979;RSQ=0.8059;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32558826 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32558937 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7119;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32559050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32559056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32559263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9229;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32559294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32559319 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4997;AVGPOST=0.9977;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 32559421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32559540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9991;RSQ=0.9575;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32559570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7351;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32559580 . T TG 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6784;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32559599 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.975;LDAF=0.4742;AVGPOST=0.9922;RSQ=0.9905;ERATE=0.0006;THETA=0.0021;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 32559770 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8493;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32559788 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5083;AVGPOST=0.9965;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 32559924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5272;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32559933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32559957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3665;ERATE=0.0004;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32560173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4905;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32560196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9178;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32560321 . A ACT 445 PASS INDEL;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0084;AVGPOST=0.9960;RSQ=0.8001;ERATE=0.0007;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32560496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.916;LDAF=0.8990;AVGPOST=0.9645;RSQ=0.8744;ERATE=0.0082;THETA=0.0006;AC=1986;AN=2184 GT:DS:GL:BD 0.90934068 1 1 32560532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1116;AVGPOST=0.9979;RSQ=0.9912;ERATE=0.0005;THETA=0.0003;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 32560685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9713;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32560792 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9860;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32560871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0047;AVGPOST=0.9981;RSQ=0.8203;ERATE=0.0004;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32560890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5126;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32560942 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9002;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0004;THETA=0.0005;AC=1966;AN=2184 GT:DS:GL:BD 0.90018314 1 1 32560953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32560991 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9509;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32561032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9573;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32561083 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8452;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32561095 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9988;RSQ=0.9180;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32561159 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0077;AVGPOST=0.9972;RSQ=0.8440;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32561170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8476;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32561182 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.9800;AVGPOST=0.9919;RSQ=0.8253;ERATE=0.0016;THETA=0.0003;AC=2149;AN=2184 GT:DS:GL:BD 0.98397434 1 1 32561236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2761;AVGPOST=0.9939;RSQ=0.9883;ERATE=0.0004;THETA=0.0012;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 32561253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7333;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32561265 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32561280 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9836;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32561317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9483;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32561325 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0083;AVGPOST=0.9978;RSQ=0.8850;ERATE=0.0005;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32561492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4377;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32561493 . T TA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.6033;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32561501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9166;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32561522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7875;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32561545 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9643;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32561582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8426;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32561601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.371;LDAF=0.0047;AVGPOST=0.9941;RSQ=0.5016;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32561660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7259;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32561716 . AAAAC A 1112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9994;RSQ=0.9588;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32561727 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32561843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32561868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1172;AVGPOST=0.9985;RSQ=0.9948;ERATE=0.0004;THETA=0.0006;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 32561986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8313;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32562039 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32562078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0988;AVGPOST=0.9985;RSQ=0.9937;ERATE=0.0003;THETA=0.0011;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 32562397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32562430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4401;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32562509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6765;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32562527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6829;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32562626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7641;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32562661 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7454;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32562739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6749;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32562799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4674;AVGPOST=0.9931;RSQ=0.9907;ERATE=0.0007;THETA=0.0006;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 32562853 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.866;LDAF=0.0085;AVGPOST=0.9976;RSQ=0.8792;ERATE=0.0006;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32562901 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1234;AVGPOST=0.9885;RSQ=0.9603;ERATE=0.0010;THETA=0.0009;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 32563173 . GAGCC G 28681 PASS INDEL;BAVGPOST=0.981;BRSQ=0.961;LDAF=0.2793;AVGPOST=0.9921;RSQ=0.9852;ERATE=0.0005;THETA=0.0020;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 32563226 . GCA G 100 PASS INDEL;BAVGPOST=0.984;BRSQ=0.627;LDAF=0.0295;AVGPOST=0.9683;RSQ=0.5440;ERATE=0.0102;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32563278 . G GA 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6659;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32563383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0132;AVGPOST=0.9959;RSQ=0.8886;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32563407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0099;AVGPOST=0.9977;RSQ=0.9016;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32563504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.856;LDAF=0.0435;AVGPOST=0.9888;RSQ=0.8906;ERATE=0.0006;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32563555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.965;LDAF=0.4952;AVGPOST=0.9857;RSQ=0.9809;ERATE=0.0007;THETA=0.0004;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 32563608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5604;ERATE=0.0005;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32563624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.746;LDAF=0.0094;AVGPOST=0.9950;RSQ=0.7677;ERATE=0.0004;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32563658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3877;ERATE=0.0006;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32563680 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32563807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5192;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32563979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6043;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32563999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32564106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32564119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32564251 . CA C 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0034;AVGPOST=0.9955;RSQ=0.5003;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32564435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0093;AVGPOST=0.9987;RSQ=0.9455;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32564480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5366;ERATE=0.0007;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32564504 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9411;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32564515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.6631;AVGPOST=0.9956;RSQ=0.9914;ERATE=0.0005;THETA=0.0005;AC=1450;AN=2184 GT:DS:GL:BD 0.66391939 1 1 32564519 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0086;AVGPOST=0.9996;RSQ=0.9785;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32564571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9991;RSQ=0.9580;ERATE=0.0006;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32564626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5587;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32564691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8913;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32564881 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0171;AVGPOST=0.9996;RSQ=0.9894;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32564896 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5613;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32564989 . G GT 62 PASS INDEL;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6223;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32565012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5802;AVGPOST=0.9973;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 32565131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32565165 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6879;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32565184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8682;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32565225 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0027;AVGPOST=0.9961;RSQ=0.4358;ERATE=0.0011;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32565243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32565324 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8879;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32565328 rs60277893 GC G 1035 PASS INDEL;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9275;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32565413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9343;ERATE=0.0005;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32565492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0047;AVGPOST=0.9973;RSQ=0.7742;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32565604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32565847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6828;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32566014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9993;RSQ=0.9668;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32566089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5802;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0009;THETA=0.0005;AC=1268;AN=2184 GT:DS:GL:BD 0.58058608 1 1 32566188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0079;AVGPOST=0.9982;RSQ=0.8949;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32566248 rs71118917 AT A 1114 PASS INDEL;BAVGPOST=0.756;BRSQ=0.375;LDAF=0.2766;AVGPOST=0.7034;RSQ=0.3721;ERATE=0.0387;THETA=0.0006;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 32566512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.794;LDAF=0.0240;AVGPOST=0.9909;RSQ=0.8612;ERATE=0.0008;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32566533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.733;LDAF=0.0825;AVGPOST=0.9387;RSQ=0.7038;ERATE=0.0061;THETA=0.0013;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 32566535 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32566583 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9998;AVGPOST=0.9996;RSQ=0.0622;ERATE=0.0003;THETA=0.0003;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 32566624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9988;RSQ=0.9531;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32566649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32566711 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0267;AVGPOST=0.9984;RSQ=0.9790;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32566747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9183;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32566803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4292;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5837;AVGPOST=0.9966;RSQ=0.9941;ERATE=0.0010;THETA=0.0010;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 32567046 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32567108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0010;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32567160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567176 rs112482079 CA C 1776 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0077;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32567193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5866;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0005;THETA=0.0009;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 32567228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32567256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8339;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32567322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5912;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0005;THETA=0.0004;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 32567399 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5918;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0005;AC=1292;AN=2184 GT:DS:GL:BD 0.59157509 1 1 32567425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32567603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6301;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5696;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0010;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 32567757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.855;LDAF=0.0056;AVGPOST=0.9969;RSQ=0.7766;ERATE=0.0007;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32567841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567871 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0229;AVGPOST=0.9995;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32567922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8125;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32567943 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32567960 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5258;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567983 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32567998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0141;AVGPOST=0.9992;RSQ=0.9796;ERATE=0.0003;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32568081 . TTGGAGCA T 2773 PASS INDEL;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0086;AVGPOST=0.9995;RSQ=0.9705;ERATE=0.0003;THETA=0.0011;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32568088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5443;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32568115 rs71118919 G GC 132296 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9997;AVGPOST=0.9995;RSQ=0.0677;ERATE=0.0003;THETA=0.0005;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 32568196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4233;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32568258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1860;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32568272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32568348 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4433;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32568509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7113;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32568572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9627;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32568615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4551;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32568636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9021;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32568732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5844;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=1276;AN=2184 GT:DS:GL:BD 0.58424908 1 1 32568760 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.728;LDAF=0.0059;AVGPOST=0.9958;RSQ=0.7189;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32568860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32568868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2693;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 32568922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9432;ERATE=0.0002;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32568939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8517;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32568976 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8172;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32569077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8710;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32569113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32569114 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7473;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32569176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0002;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32569334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.882;LDAF=0.0056;AVGPOST=0.9960;RSQ=0.7492;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32569340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32569341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32569382 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5601;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32569410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4421;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32569452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6628;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32569490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.724;LDAF=0.0050;AVGPOST=0.9979;RSQ=0.8298;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32569536 rs72184479 A ATG 1167 PASS INDEL;BAVGPOST=0.929;BRSQ=0.739;LDAF=0.1657;AVGPOST=0.9340;RSQ=0.8232;ERATE=0.0045;THETA=0.0004;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 32569643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9131;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32569683 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5817;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32569737 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0002;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32569854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8520;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32569887 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8198;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32570072 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32570218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32570290 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32570292 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32570333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32570338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2690;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 32570557 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9292;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32570578 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4340;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32570625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0664;AVGPOST=0.9994;RSQ=0.9953;ERATE=0.0002;THETA=0.0003;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 32570633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7909;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32570651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32570849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4325;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32570869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0033;AVGPOST=0.9979;RSQ=0.7675;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32570896 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.965;LDAF=0.1170;AVGPOST=0.9968;RSQ=0.9864;ERATE=0.0006;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 32570931 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1743;AVGPOST=0.9915;RSQ=0.9789;ERATE=0.0008;THETA=0.0006;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 32570934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0054;AVGPOST=0.9986;RSQ=0.9000;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32570990 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32571113 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0002;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32571137 . T TAC 1620 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9985;RSQ=0.9572;ERATE=0.0006;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32571238 . CAT C 6 PASS INDEL;BAVGPOST=0.971;BRSQ=0.115;LDAF=0.0612;AVGPOST=0.9223;RSQ=0.4703;ERATE=0.0035;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32571248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32571292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32571391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2688;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0002;THETA=0.0002;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 32571438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32571499 . TCA T 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32571518 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2157;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32571543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2157;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0002;THETA=0.0004;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32571557 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32571705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32571761 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0109;AVGPOST=0.9988;RSQ=0.9514;ERATE=0.0002;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32572002 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0002;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32572033 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32572090 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0216;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0002;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32572112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32572180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7762;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32572235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9318;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32572252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0137;AVGPOST=0.9991;RSQ=0.9745;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32572355 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32572375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2159;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32572495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2084;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0002;THETA=0.0003;AC=456;AN=2184 GT:DS:GL:BD 0.20879121 0 1 32572516 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32572580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0003;THETA=0.0013;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32572589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4848;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0006;THETA=0.0001;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 32572693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2166;AVGPOST=0.9980;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 32572711 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6837;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32572715 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4872;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32572807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32572868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5504;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32573031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6573;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32573307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0654;AVGPOST=0.9992;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32573406 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0002;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32573532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2039;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 32573544 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0781;AVGPOST=0.9994;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 32573559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1180;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0003;THETA=0.0003;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 32573670 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9858;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32573691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9400;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32573818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2221;AVGPOST=0.9980;RSQ=0.9954;ERATE=0.0005;THETA=0.0006;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 32573988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9321;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32574063 . CT C 53 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7115;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32574158 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1941;AVGPOST=0.9974;RSQ=0.9937;ERATE=0.0005;THETA=0.0009;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 32574186 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1940;AVGPOST=0.9976;RSQ=0.9943;ERATE=0.0008;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 32574208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0659;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32574233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0066;AVGPOST=0.9996;RSQ=0.9707;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32574357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1933;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 32574416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0082;AVGPOST=0.9982;RSQ=0.9333;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32574486 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1914;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 32574504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32574632 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8578;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32574647 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0079;AVGPOST=0.9994;RSQ=0.9654;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32574721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2771;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0005;THETA=0.0003;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 32575029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2780;AVGPOST=0.9982;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 32575086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2779;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0004;THETA=0.0027;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 32575203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6925;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32575277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1944;AVGPOST=0.9981;RSQ=0.9955;ERATE=0.0004;THETA=0.0002;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 32575367 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3799;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32575446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9591;ERATE=0.0004;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32575500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9372;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32575529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0206;AVGPOST=0.9997;RSQ=0.9937;ERATE=0.0002;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32575544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1941;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0002;THETA=0.0004;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 32575557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32575617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.5067;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32575725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1932;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 32575826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5800;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32575856 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32575882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32576095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32576130 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32576144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.1203;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32576163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8044;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32576350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5276;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32576407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9020;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32576417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32576421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9341;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32576475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0088;AVGPOST=0.9980;RSQ=0.9117;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32576532 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7487;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32576556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32576570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7029;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32576656 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4156;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32576674 . TTTTA T 43514 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1955;AVGPOST=0.9985;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 32576720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32576838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1915;AVGPOST=0.9992;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 32576923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.4916;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32577079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5557;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32577084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.862;LDAF=0.0120;AVGPOST=0.9924;RSQ=0.7636;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32577117 rs34122170 C CAT 26137 PASS INDEL;BAVGPOST=0.982;BRSQ=0.961;LDAF=0.2457;AVGPOST=0.9849;RSQ=0.9697;ERATE=0.0015;THETA=0.0004;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 32577145 . A ATT 8191 PASS INDEL;BAVGPOST=0.980;BRSQ=0.954;LDAF=0.2437;AVGPOST=0.9872;RSQ=0.9744;ERATE=0.0008;THETA=0.0004;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 32577148 . G GA 26059 PASS INDEL;BAVGPOST=0.948;BRSQ=0.829;LDAF=0.8395;AVGPOST=0.9139;RSQ=0.7885;ERATE=0.0269;THETA=0.0005;AC=1879;AN=2184 GT:DS:GL:BD 0.86034799 1 1 32577344 rs75741833 A AT 111436 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9133;AVGPOST=0.9984;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 32577350 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4888;ERATE=0.0006;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32577621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7337;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32577638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.661;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32577732 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32577743 rs59528921 GTT G 31178 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2766;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 32577763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7001;AVGPOST=0.9963;RSQ=0.9937;ERATE=0.0006;THETA=0.0004;AC=1527;AN=2184 GT:DS:GL:BD 0.69917583 1 1 32577897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7199;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32578099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2226;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0007;THETA=0.0004;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 32578163 . CT C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6875;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32578194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32578247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32578375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0052;AVGPOST=0.9991;RSQ=0.9323;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32578438 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8661;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32578450 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32578489 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0216;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0002;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32578663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7456;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32578717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32578738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32578746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.845;LDAF=0.0168;AVGPOST=0.9955;RSQ=0.8955;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32578813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1955;AVGPOST=0.9973;RSQ=0.9943;ERATE=0.0005;THETA=0.0006;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 32578936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.9261;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0002;THETA=0.0002;AC=2022;AN=2184 GT:DS:GL:BD 0.92582417 1 1 32578974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6298;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32579015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1280;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 32579048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.4229;AVGPOST=0.9963;RSQ=0.9943;ERATE=0.0006;THETA=0.0001;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32579176 . AT A 348 PASS INDEL;BAVGPOST=0.857;BRSQ=0.329;LDAF=0.0830;AVGPOST=0.9593;RSQ=0.8181;ERATE=0.0009;THETA=0.0002;AC=158;AN=2184 GT:DS:GL:BD 0.07234433 0 1 32579211 rs112830711 TC T 7503 PASS INDEL;BAVGPOST=0.986;BRSQ=0.918;LDAF=0.0754;AVGPOST=0.9937;RSQ=0.9705;ERATE=0.0007;THETA=0.0004;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 32579213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.737;LDAF=0.0061;AVGPOST=0.9969;RSQ=0.8134;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32579304 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.770;LDAF=0.0241;AVGPOST=0.9797;RSQ=0.6597;ERATE=0.0019;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32579326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4738;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32579333 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4235;AVGPOST=0.9969;RSQ=0.9952;ERATE=0.0006;THETA=0.0002;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 32579366 . GC G 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4264;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32579385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32579445 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4237;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0006;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32579455 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32579483 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4235;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32579487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4259;AVGPOST=0.9916;RSQ=0.9879;ERATE=0.0014;THETA=0.0005;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 32579612 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0056;AVGPOST=0.9966;RSQ=0.7957;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32579617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6731;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32579700 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.944;LDAF=0.1895;AVGPOST=0.9901;RSQ=0.9769;ERATE=0.0004;THETA=0.0017;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 32579782 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4235;AVGPOST=0.9957;RSQ=0.9936;ERATE=0.0008;THETA=0.0003;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32579794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0055;AVGPOST=0.9980;RSQ=0.8462;ERATE=0.0004;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32579879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4239;AVGPOST=0.9975;RSQ=0.9962;ERATE=0.0005;THETA=0.0004;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 32580056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4229;AVGPOST=0.9973;RSQ=0.9962;ERATE=0.0005;THETA=0.0001;AC=923;AN=2184 GT:DS:GL:BD 0.42261904 0 1 32580095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32580104 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9996;RSQ=0.9790;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32580112 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9548;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32580167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32580295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6334;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32580345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4723;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32580363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7732;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32580402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32580423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0266;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0002;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32580430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8821;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32580465 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0939;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 32580514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8034;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32580519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4241;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0003;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32580757 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32580802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0928;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0002;THETA=0.0006;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 32580805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4244;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0003;THETA=0.0004;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 32581080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9754;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32581104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32581123 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32581221 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0067;AVGPOST=0.9959;RSQ=0.7335;ERATE=0.0009;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32581257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0169;AVGPOST=0.9968;RSQ=0.9322;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32581260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.542;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8890;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32581277 rs75622042 AAATAGATC A 56479 PASS INDEL;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.4199;AVGPOST=0.9792;RSQ=0.9677;ERATE=0.0040;THETA=0.0003;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 32581441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32581500 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32581528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.4542;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32581534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4248;AVGPOST=0.9952;RSQ=0.9929;ERATE=0.0010;THETA=0.0004;AC=924;AN=2184 GT:DS:GL:BD 0.42307693 0 1 32581568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5947;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32581584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0266;AVGPOST=0.9994;RSQ=0.9894;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32581585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6333;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32581586 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4241;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32581688 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0886;AVGPOST=0.9992;RSQ=0.9963;ERATE=0.0002;THETA=0.0004;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 32581842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9947;ERATE=0.0002;THETA=0.0001;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32582039 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0086;AVGPOST=0.9989;RSQ=0.9475;ERATE=0.0002;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32582101 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.7301;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32582115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6292;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=1373;AN=2184 GT:DS:GL:BD 0.62866300 1 1 32582158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0838;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 32582172 . CTT C 155 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7620;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32582196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32582287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32582314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32582473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0018;AVGPOST=0.9996;RSQ=0.9041;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32582513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4242;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0004;THETA=0.0005;AC=927;AN=2184 GT:DS:GL:BD 0.42445055 0 1 32582565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.6351;AVGPOST=0.9954;RSQ=0.9928;ERATE=0.0011;THETA=0.0003;AC=1385;AN=2184 GT:DS:GL:BD 0.63415754 1 1 32582605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4242;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0005;THETA=0.0003;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 32582701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32582814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32582857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32583006 . CT C 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4490;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32583055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0922;AVGPOST=0.9990;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 32583101 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32583346 . TTTG T 20 PASS INDEL;BAVGPOST=0.994;BRSQ=0.636;LDAF=0.0173;AVGPOST=0.9830;RSQ=0.6240;ERATE=0.0034;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32583362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.5083;AVGPOST=0.9829;RSQ=0.9771;ERATE=0.0038;THETA=0.0004;AC=1114;AN=2184 GT:DS:GL:BD 0.51007324 1 1 32583417 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.905;LDAF=0.0096;AVGPOST=0.9970;RSQ=0.8812;ERATE=0.0007;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32583448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6422;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32583449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32583456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.981;LDAF=0.8573;AVGPOST=0.9910;RSQ=0.9720;ERATE=0.0008;THETA=0.0002;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 32583524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0919;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 32583532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.5897;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32583633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9979;RSQ=0.9189;ERATE=0.0006;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32583634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6989;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32583638 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.957;LDAF=0.4989;AVGPOST=0.9735;RSQ=0.9639;ERATE=0.0048;THETA=0.0004;AC=1100;AN=2184 GT:DS:GL:BD 0.50366300 1 1 32583654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7650;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32583680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8980;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32583800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2057;AVGPOST=0.9979;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 32583824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6406;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=1398;AN=2184 GT:DS:GL:BD 0.64010990 1 1 32583856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7201;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32583921 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0113;AVGPOST=0.9988;RSQ=0.9627;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32583993 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9619;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32584084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2149;AVGPOST=0.9983;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 32584088 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32584284 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0527;AVGPOST=0.9996;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32584312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32584322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7910;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32584360 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0036;AVGPOST=0.9997;RSQ=0.9612;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32584375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32584392 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32584676 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32584777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32584791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0528;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32584889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32584895 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0283;AVGPOST=0.9988;RSQ=0.9834;ERATE=0.0003;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32584903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8667;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32585004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8908;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32585076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8605;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32585232 . C CT 163 PASS INDEL;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7100;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32585281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32585314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.913;LDAF=0.0258;AVGPOST=0.9969;RSQ=0.9540;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32585395 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0361;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32585413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32585573 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0363;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0004;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32585666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32585675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32585677 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4938;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32585707 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8096;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32585729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6160;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32585730 . A ACTCTGG 4252 PASS INDEL;BAVGPOST=0.990;BRSQ=0.872;LDAF=0.0385;AVGPOST=0.9921;RSQ=0.9219;ERATE=0.0010;THETA=0.0006;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32585748 . G GGC 2222 PASS INDEL;BAVGPOST=0.995;BRSQ=0.901;LDAF=0.0257;AVGPOST=0.9953;RSQ=0.9338;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32585753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32585871 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9319;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32585949 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32585998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32586006 . G GT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0194;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32586057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7183;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32586084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0361;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32586121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0526;AVGPOST=0.9996;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32586163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586263 . TG T 115 PASS INDEL;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6761;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32586444 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32586524 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9463;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32586537 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586547 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9727;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32586687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5400;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586912 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7141;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32586955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9458;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32587049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7441;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32587138 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9230;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32587346 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32587398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4641;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32587450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7215;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32587504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0366;AVGPOST=0.9990;RSQ=0.9934;ERATE=0.0003;THETA=0.0006;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32587520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6537;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32587545 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7534;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32587713 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9754;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32587790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.8010;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32588053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6181;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32588143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7992;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32588179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5356;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32588238 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6872;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32588260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9984;RSQ=0.8632;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32588459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5550;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32588530 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5033;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32588843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32588908 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32588922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.531;LDAF=0.0029;AVGPOST=0.9975;RSQ=0.6622;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32588949 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5272;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32588982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6770;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32589133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32589177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6045;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32589211 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3247;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 32589212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1672;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 32589383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0326;AVGPOST=0.9980;RSQ=0.9737;ERATE=0.0003;THETA=0.0004;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 32589412 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32589435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9932;ERATE=0.0002;THETA=0.0024;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32589447 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9886;ERATE=0.0002;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32589570 . AG A 6442 PASS INDEL;BAVGPOST=0.979;BRSQ=0.953;LDAF=0.1436;AVGPOST=0.9809;RSQ=0.9647;ERATE=0.0009;THETA=0.0003;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 32589662 rs60221574 GT G 30073 PASS INDEL;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1647;AVGPOST=0.9968;RSQ=0.9951;ERATE=0.0002;THETA=0.0008;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 32589663 . TG T 5535 PASS INDEL;BAVGPOST=0.980;BRSQ=0.952;LDAF=0.1363;AVGPOST=0.9851;RSQ=0.9688;ERATE=0.0004;THETA=0.0004;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 32589666 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3332;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0004;THETA=0.0021;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 32589827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7145;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32589853 . AG A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6274;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32589952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.969;LDAF=0.1383;AVGPOST=0.9926;RSQ=0.9768;ERATE=0.0004;THETA=0.0006;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 32589957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32589964 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6682;AVGPOST=0.9972;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 32590245 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0064;AVGPOST=0.9961;RSQ=0.7741;ERATE=0.0009;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32590334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1700;AVGPOST=0.9969;RSQ=0.9916;ERATE=0.0005;THETA=0.0004;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 32590340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.3754;AVGPOST=0.9962;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 32590343 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6816;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32590354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5021;AVGPOST=0.9968;RSQ=0.9960;ERATE=0.0004;THETA=0.0008;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 32590416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1683;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0003;THETA=0.0009;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 32590622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1684;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 32590645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9729;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32590738 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32590830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1684;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 32590872 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32590874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8755;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32590979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0098;AVGPOST=0.9981;RSQ=0.9300;ERATE=0.0003;THETA=0.0001;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32591035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7976;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32591043 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9518;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32591067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8244;ERATE=0.0003;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32591097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32591116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6717;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0005;THETA=0.0002;AC=1468;AN=2184 GT:DS:GL:BD 0.67216116 1 1 32591151 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32591403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32591454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.982;LDAF=0.1186;AVGPOST=0.9948;RSQ=0.9828;ERATE=0.0004;THETA=0.0002;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32591736 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0308;AVGPOST=0.9974;RSQ=0.9654;ERATE=0.0002;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32591756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32591775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0673;AVGPOST=0.9994;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32591827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32591837 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32591968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1700;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 32592123 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32592463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32592535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9444;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32592575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6384;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32592577 . CCT C 102 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32592596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0002;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32592622 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8841;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32592693 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32592889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.4621;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32593038 . TTAA T 111 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32593082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8654;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32593120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0192;AVGPOST=0.9987;RSQ=0.9753;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32593191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3342;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 32593195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1690;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0002;THETA=0.0004;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 32593303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32593358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32593416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.8082;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32593419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9456;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32593541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32593560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32593579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0066;AVGPOST=0.9991;RSQ=0.9515;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32593612 . TCA T 24795 PASS INDEL;BAVGPOST=0.977;BRSQ=0.964;LDAF=0.4817;AVGPOST=0.9634;RSQ=0.9520;ERATE=0.0089;THETA=0.0003;AC=1058;AN=2184 GT:DS:GL:BD 0.48443222 0 1 32593678 rs3052188 CAA C 56965 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5004;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 32593679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32593734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.3341;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 32593887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32594035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6472;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32594066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8737;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32594091 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1465;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0008;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 32594103 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0207;AVGPOST=0.9984;RSQ=0.9687;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32594116 . CCTCCT C 214 PASS INDEL;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0066;AVGPOST=0.9971;RSQ=0.8223;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32594199 . TTC T 268 PASS INDEL;BAVGPOST=0.960;BRSQ=0.445;LDAF=0.1029;AVGPOST=0.8704;RSQ=0.4429;ERATE=0.0150;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32594245 . C CT 25 PASS INDEL;BAVGPOST=0.836;BRSQ=0.005;LDAF=0.0661;AVGPOST=0.9023;RSQ=0.3972;ERATE=0.0034;THETA=0.0006;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32594272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.765;LDAF=0.2691;AVGPOST=0.8719;RSQ=0.7628;ERATE=0.0218;THETA=0.0004;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 32594299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.848;LDAF=0.0382;AVGPOST=0.9880;RSQ=0.8777;ERATE=0.0009;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 32594300 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.949;LDAF=0.1387;AVGPOST=0.9918;RSQ=0.9824;ERATE=0.0008;THETA=0.0009;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 32594346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6632;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32594380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32594546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1475;AVGPOST=0.9985;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 32594625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0086;AVGPOST=0.9982;RSQ=0.9257;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32594634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0146;AVGPOST=0.9987;RSQ=0.9635;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32594650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32594654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32594685 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5664;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32594749 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0186;AVGPOST=0.9987;RSQ=0.9741;ERATE=0.0002;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32594756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6336;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32594855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32594879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32594914 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6995;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32594942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32594945 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32595012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.8974;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32595079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7904;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32595185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32595206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1477;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 32595294 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32595393 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.795;LDAF=0.1432;AVGPOST=0.9351;RSQ=0.7840;ERATE=0.0238;THETA=0.0004;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32595451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.730;LDAF=0.0053;AVGPOST=0.9964;RSQ=0.7257;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32595520 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9775;ERATE=0.0002;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32595607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32595671 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32595673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1197;AVGPOST=0.9954;RSQ=0.9833;ERATE=0.0005;THETA=0.0008;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 32595690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.967;LDAF=0.1645;AVGPOST=0.9980;RSQ=0.9936;ERATE=0.0004;THETA=0.0005;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 32595784 . C CT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5432;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32595868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7049;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32595900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0002;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32595925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32595985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9045;ERATE=0.0003;THETA=0.0028;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32596024 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5551;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32596036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8818;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32596051 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4818;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32596141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9506;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32596153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1557;AVGPOST=0.9983;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 32596296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8296;ERATE=0.0002;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32596315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5349;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32596373 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8605;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32596487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32596538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8811;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32596686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.7981;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32596720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4676;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32596818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.1443;AVGPOST=0.9920;RSQ=0.9820;ERATE=0.0005;THETA=0.0006;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 32596918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.937;LDAF=0.0246;AVGPOST=0.9895;RSQ=0.8293;ERATE=0.0010;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32596959 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7202;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32597042 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5010;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32597050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3203;AVGPOST=0.9931;RSQ=0.9898;ERATE=0.0004;THETA=0.0004;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 32597077 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6325;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32597111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6515;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32597221 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9980;RSQ=0.8394;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32597320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8739;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32597396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5473;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32597656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.953;LDAF=0.0428;AVGPOST=0.9972;RSQ=0.9746;ERATE=0.0003;THETA=0.0007;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 32597919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.904;LDAF=0.0512;AVGPOST=0.9904;RSQ=0.9256;ERATE=0.0003;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32597995 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0009;AVGPOST=0.9982;RSQ=0.2024;ERATE=0.0006;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32598078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3164;AVGPOST=0.9917;RSQ=0.9880;ERATE=0.0009;THETA=0.0004;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 32598100 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8534;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32598124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32598134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7178;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32598137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8416;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32598198 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.709;LDAF=0.0181;AVGPOST=0.9899;RSQ=0.7764;ERATE=0.0005;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32598397 . TG T 69 PASS INDEL;BAVGPOST=0.999;BRSQ=0.573;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6761;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32598514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8461;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32598613 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0039;AVGPOST=0.9972;RSQ=0.6894;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32598865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3200;AVGPOST=0.9811;RSQ=0.9754;ERATE=0.0013;THETA=0.0005;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 32598877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32598951 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32598964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0998;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 32599023 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32599112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32599141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32599167 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32599227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0833;AVGPOST=0.9987;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 32599255 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0641;AVGPOST=0.9995;RSQ=0.9962;ERATE=0.0003;THETA=0.0006;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 32599322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0034;AVGPOST=0.9992;RSQ=0.8926;ERATE=0.0005;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32599423 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0266;AVGPOST=0.9998;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32599519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1835;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0004;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 32599621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5770;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32599622 . AAAAC A 25 PASS INDEL;BAVGPOST=0.995;BRSQ=0.691;LDAF=0.0123;AVGPOST=0.9858;RSQ=0.5172;ERATE=0.0047;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32599642 rs10715965 CA C 2690 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0239;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32599666 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9920;ERATE=0.0003;THETA=0.0014;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32599682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9480;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32599709 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0246;AVGPOST=0.9994;RSQ=0.9884;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32599728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1922;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0005;THETA=0.0012;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 32599751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9995;RSQ=0.9791;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32600015 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0699;AVGPOST=0.9992;RSQ=0.9953;ERATE=0.0003;THETA=0.0007;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 32600079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0104;AVGPOST=0.9987;RSQ=0.9573;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32600172 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8512;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32600184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2001;AVGPOST=0.9986;RSQ=0.9968;ERATE=0.0006;THETA=0.0021;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 32600305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32600360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0841;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 32600362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.830;LDAF=0.0194;AVGPOST=0.9916;RSQ=0.8190;ERATE=0.0005;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32600468 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0384;AVGPOST=0.9947;RSQ=0.9435;ERATE=0.0005;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32600502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32600531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7651;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32600544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6686;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32600556 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7897;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32600558 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0908;AVGPOST=0.9905;RSQ=0.9571;ERATE=0.0003;THETA=0.0003;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 32600633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0799;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0003;THETA=0.0011;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 32600657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4728;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32600703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5281;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32600785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0883;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 32600854 . G GGT 1749 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0128;AVGPOST=0.9965;RSQ=0.8962;ERATE=0.0004;THETA=0.0015;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32600873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0801;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0014;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 32601061 . TG T 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6221;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32601104 . T TA 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5814;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32601181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32601560 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32601649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32601678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9851;ERATE=0.0003;THETA=0.0012;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32601684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0047;AVGPOST=0.9982;RSQ=0.8471;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32601763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6470;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32601785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8833;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32601810 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32601858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4911;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32601926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0021;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32602037 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0802;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0004;THETA=0.0019;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 32602068 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0345;AVGPOST=0.9983;RSQ=0.9814;ERATE=0.0004;THETA=0.0008;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32602076 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0189;AVGPOST=0.9993;RSQ=0.9841;ERATE=0.0003;THETA=0.0013;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32602092 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32602185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32602239 . GTTATC G 214 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32602251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32602410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1070;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32602439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0077;AVGPOST=0.9976;RSQ=0.8666;ERATE=0.0003;THETA=0.0027;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32602475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0068;AVGPOST=0.9990;RSQ=0.9333;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32602485 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0052;AVGPOST=0.9994;RSQ=0.9508;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32602513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9404;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32602595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32602633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7327;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32602654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0485;AVGPOST=0.9996;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32602796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32602893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0100;AVGPOST=0.9994;RSQ=0.9804;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32603317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.727;LDAF=0.0065;AVGPOST=0.9952;RSQ=0.7051;ERATE=0.0010;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32603333 . GT G 6679 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0681;AVGPOST=0.9990;RSQ=0.9940;ERATE=0.0004;THETA=0.0009;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 32603409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1003;AVGPOST=0.9992;RSQ=0.9964;ERATE=0.0004;THETA=0.0008;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 32603597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0078;AVGPOST=0.9974;RSQ=0.8619;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32603702 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9630;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32603768 . ATG A 37 PASS INDEL;BAVGPOST=0.958;BRSQ=0.117;LDAF=0.0735;AVGPOST=0.8940;RSQ=0.4072;ERATE=0.0034;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 32603850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.599;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5385;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32603863 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0196;AVGPOST=0.9986;RSQ=0.9740;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32603917 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7931;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32604012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.940;LDAF=0.0800;AVGPOST=0.9883;RSQ=0.9437;ERATE=0.0006;THETA=0.0007;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 32604044 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5294;ERATE=0.0004;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32604243 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5338;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32604262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0036;AVGPOST=0.9984;RSQ=0.8431;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32604347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7809;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32604400 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32604559 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32604717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9123;ERATE=0.0003;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32604726 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.912;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9137;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32604763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8786;ERATE=0.0004;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32604834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32604838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6100;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32604880 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4992;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32604932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0036;AVGPOST=0.9960;RSQ=0.5692;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32605074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0042;AVGPOST=0.9956;RSQ=0.5699;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32605117 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8282;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32605210 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0028;AVGPOST=0.9974;RSQ=0.6227;ERATE=0.0006;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32605218 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6705;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32605221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0035;AVGPOST=0.9975;RSQ=0.7056;ERATE=0.0005;THETA=0.0026;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32605243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7365;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32605244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5199;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32605250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32605318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9568;ERATE=0.0003;THETA=0.0028;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32605412 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3417;AVGPOST=0.9961;RSQ=0.9945;ERATE=0.0016;THETA=0.0008;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 32605466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32605604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9505;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32605605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9338;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32605812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32605826 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32605920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3105;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0003;THETA=0.0026;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 32606052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32606114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8460;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32606136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32606163 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0028;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32606241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8199;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32606352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7600;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32606425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32606632 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6076;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32606694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4451;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32606867 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7564;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32606968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9405;ERATE=0.0003;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32607130 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6936;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32607265 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.3158;AVGPOST=0.9877;RSQ=0.9823;ERATE=0.0019;THETA=0.0010;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 32607418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32607582 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6657;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32607646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8829;ERATE=0.0004;THETA=0.0091;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32607677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.685;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.7980;ERATE=0.0005;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32607794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0004;THETA=0.0070;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32607862 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.941;LDAF=0.0709;AVGPOST=0.9822;RSQ=0.9003;ERATE=0.0028;THETA=0.0026;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 32607994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.941;LDAF=0.0653;AVGPOST=0.9858;RSQ=0.9170;ERATE=0.0027;THETA=0.0032;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32608014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32608272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32608326 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0081;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32608387 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5561;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32608523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8187;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32608574 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32608724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7327;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32608823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7810;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32608907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9585;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32609001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7267;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32609093 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32609113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.7137;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32609233 . AT A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7089;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32609286 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3078;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 32609478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32609482 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5324;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32609517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3075;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0006;THETA=0.0005;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 32609533 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32609649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7956;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32609697 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.1006;AVGPOST=0.9976;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 32609718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.3035;AVGPOST=0.9946;RSQ=0.9907;ERATE=0.0005;THETA=0.0003;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 32609739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9552;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32609740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0245;AVGPOST=0.9986;RSQ=0.9782;ERATE=0.0004;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32609873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1016;AVGPOST=0.9984;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 32609886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9809;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32609888 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.3195;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32609969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9898;ERATE=0.0002;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32610179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6606;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610194 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9848;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32610341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0095;AVGPOST=0.9994;RSQ=0.9741;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32610347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0109;AVGPOST=0.9979;RSQ=0.9266;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32610358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0431;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 32610390 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0739;AVGPOST=0.9990;RSQ=0.9948;ERATE=0.0004;THETA=0.0001;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 32610500 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0736;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0002;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 32610515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32610548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32610658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6025;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610693 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6075;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32610737 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32610819 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32610839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1014;AVGPOST=0.9987;RSQ=0.9943;ERATE=0.0004;THETA=0.0027;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 32610913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32610987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32611081 . TG T 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32611161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.680;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32611224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8645;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32611270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32611283 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9986;RSQ=0.3048;ERATE=0.0004;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32611428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6758;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32611441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0580;AVGPOST=0.9991;RSQ=0.9945;ERATE=0.0002;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32611458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2601;AVGPOST=0.9975;RSQ=0.9949;ERATE=0.0004;THETA=0.0004;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 32611515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32611534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0208;AVGPOST=0.9989;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32611537 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2511;AVGPOST=0.9969;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 32611539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32611790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0241;AVGPOST=0.9994;RSQ=0.9895;ERATE=0.0003;THETA=0.0031;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32611800 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0250;AVGPOST=0.9988;RSQ=0.9825;ERATE=0.0002;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32611849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9994;RSQ=0.9723;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32611884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.966;LDAF=0.0566;AVGPOST=0.9980;RSQ=0.9860;ERATE=0.0003;THETA=0.0006;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 32611985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3270;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 32612036 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9496;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32612087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8771;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32612089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32612092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0002;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32612313 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32612379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0786;AVGPOST=0.9991;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 32612438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9015;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32612518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9008;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32612681 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.8666;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32612827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6432;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32612832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7789;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32612912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32613074 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8903;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32613105 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0140;AVGPOST=0.9994;RSQ=0.9858;ERATE=0.0002;THETA=0.0027;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32613117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9844;ERATE=0.0003;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32613190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8660;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32613209 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0983;AVGPOST=0.9989;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 32613243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1028;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0003;THETA=0.0011;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 32613343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0039;AVGPOST=0.9987;RSQ=0.8721;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32613344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0215;AVGPOST=0.9989;RSQ=0.9797;ERATE=0.0002;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32613356 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32613427 . AG A 10473 PASS INDEL;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0551;AVGPOST=0.9982;RSQ=0.9867;ERATE=0.0004;THETA=0.0002;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 32613501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32613517 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2212;AVGPOST=0.9991;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 32613524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8874;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32613553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7526;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32613625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32613629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.9007;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32613685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0200;AVGPOST=0.9988;RSQ=0.9757;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32613710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.628;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32613737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.952;LDAF=0.0951;AVGPOST=0.9884;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 32613884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6521;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32614028 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32614094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9195;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32614136 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32614162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8928;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32614237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32614273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1900;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 32614284 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4094;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 32614371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4096;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 32614419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32614515 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32614523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32614550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32614551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32614667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0154;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32614783 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32614804 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32614841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32614918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0177;AVGPOST=0.9983;RSQ=0.9622;ERATE=0.0003;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32614929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5780;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32615211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.9989;AVGPOST=0.9994;RSQ=0.7307;ERATE=0.0003;THETA=0.0010;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 32615263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0059;AVGPOST=0.9954;RSQ=0.6898;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32615271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32615508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32615584 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9727;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32615890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6506;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32615914 . GTGTT G 215 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.6380;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32615970 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32616290 . TA T 200 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0068;AVGPOST=0.9947;RSQ=0.6797;ERATE=0.0010;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32616397 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0047;AVGPOST=0.9974;RSQ=0.7551;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32616406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4428;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32616433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.834;LDAF=0.0135;AVGPOST=0.9959;RSQ=0.8884;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32616460 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32616503 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6218;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32616633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32616685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32616868 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0284;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32616938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32617275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32617314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0074;AVGPOST=0.9994;RSQ=0.9602;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32617406 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.751;LDAF=0.0043;AVGPOST=0.9970;RSQ=0.7682;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32617421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.941;LDAF=0.0914;AVGPOST=0.9927;RSQ=0.9661;ERATE=0.0005;THETA=0.0004;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 32617430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0264;AVGPOST=0.9990;RSQ=0.9854;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32617573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6422;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32617584 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1022;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 32617652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7517;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32617731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9052;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32617811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9158;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32617976 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32618008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.1948;AVGPOST=0.9977;RSQ=0.9940;ERATE=0.0004;THETA=0.0005;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 32618064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0090;AVGPOST=0.9974;RSQ=0.8839;ERATE=0.0006;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32618089 . TTC T 1654 PASS INDEL;BAVGPOST=0.975;BRSQ=0.701;LDAF=0.0485;AVGPOST=0.9762;RSQ=0.7913;ERATE=0.0027;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 32618246 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5804;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32618307 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32618430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.968;LDAF=0.0412;AVGPOST=0.9976;RSQ=0.9762;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 32618439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0923;AVGPOST=0.9991;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 32618457 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32618648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32618683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32618690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32618703 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1019;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 32618926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6148;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32618968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0139;AVGPOST=0.9991;RSQ=0.9742;ERATE=0.0004;THETA=0.0029;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32619142 . C CA 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.396;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4141;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32619408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3508;ERATE=0.0004;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32619415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0527;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0043;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32619533 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32619728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8333;AVGPOST=0.9904;RSQ=0.9739;ERATE=0.0004;THETA=0.0021;AC=1822;AN=2184 GT:DS:GL:BD 0.83424908 1 1 32619750 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0528;AVGPOST=0.9991;RSQ=0.9920;ERATE=0.0004;THETA=0.0007;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32620060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32620061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.2669;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32620120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5567;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6046;ERATE=0.0004;THETA=0.0049;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32620215 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5286;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0085;AVGPOST=0.9980;RSQ=0.9084;ERATE=0.0004;THETA=0.0042;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32620287 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4410;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32620309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.686;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6557;ERATE=0.0006;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32620326 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.499;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6625;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32620379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0118;AVGPOST=0.9983;RSQ=0.9512;ERATE=0.0004;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32620432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32620461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8157;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32620463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4967;ERATE=0.0004;THETA=0.0063;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32620540 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7162;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620691 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2323;AVGPOST=0.9960;RSQ=0.9925;ERATE=0.0009;THETA=0.0006;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 32620712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7099;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32620733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32620735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9270;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32620812 . CTTTA C 40 PASS INDEL;BAVGPOST=0.998;BRSQ=0.760;LDAF=0.0095;AVGPOST=0.9905;RSQ=0.5843;ERATE=0.0027;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32620924 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9247;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32620985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.985;LDAF=0.2318;AVGPOST=0.9869;RSQ=0.9757;ERATE=0.0037;THETA=0.0008;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 32621027 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0121;AVGPOST=0.9984;RSQ=0.9495;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32621061 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0365;AVGPOST=0.9986;RSQ=0.9850;ERATE=0.0003;THETA=0.0007;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32621099 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4600;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0255;AVGPOST=0.9966;RSQ=0.9474;ERATE=0.0004;THETA=0.0009;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32621153 . G GCACC 1584 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0104;AVGPOST=0.9983;RSQ=0.9433;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32621217 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0104;AVGPOST=0.9996;RSQ=0.9855;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32621335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8930;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32621347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32621391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.9225;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32621413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8765;ERATE=0.0007;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32621475 . A AT 1744 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0141;AVGPOST=0.9969;RSQ=0.9305;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32621549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32621607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0417;AVGPOST=0.9993;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 32621608 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0451;AVGPOST=0.9973;RSQ=0.9782;ERATE=0.0004;THETA=0.0007;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32621648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.9021;ERATE=0.0007;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32621767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32621874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32621908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0379;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32622192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32622204 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32622281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8183;ERATE=0.0008;THETA=0.0023;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32622292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0545;AVGPOST=0.9991;RSQ=0.9945;ERATE=0.0003;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32622379 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32622687 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623011 . C CT 2299 PASS INDEL;BAVGPOST=0.984;BRSQ=0.871;LDAF=0.0651;AVGPOST=0.9798;RSQ=0.8774;ERATE=0.0025;THETA=0.0015;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 32623045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.495;LDAF=0.0030;AVGPOST=0.9953;RSQ=0.3072;ERATE=0.0009;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32623108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8137;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32623131 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3917;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3778;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0172;AVGPOST=0.9937;RSQ=0.8502;ERATE=0.0006;THETA=0.0030;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32623277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7670;ERATE=0.0004;THETA=0.0041;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32623351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5019;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32623779 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32623853 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9901;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32623933 . TACA T 1902 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9994;RSQ=0.9702;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32624037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32624102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624111 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9388;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32624223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8902;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32624241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624370 . C CT 114 PASS INDEL;BAVGPOST=0.998;BRSQ=0.711;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6075;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32624430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7140;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32624569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7359;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32624709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32624809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624810 . TGTC T 341 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7496;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32624893 . G GA 134 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6196;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32624905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6022;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32625002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32625160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6977;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32625164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0348;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32625265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32625378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2662;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 32625426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32625440 . GTCTC G 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6191;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32625454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32625548 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32625604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32625708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32626030 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8622;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32626100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32626137 . GGT G 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32626221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9704;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32626409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32626423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4278;AVGPOST=0.9967;RSQ=0.9946;ERATE=0.0007;THETA=0.0003;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 32626460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.6261;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32626461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32626518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32626561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8202;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32626613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7512;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32626662 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0908;AVGPOST=0.9979;RSQ=0.9899;ERATE=0.0003;THETA=0.0004;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 32626679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32626681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2816;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=616;AN=2184 GT:DS:GL:BD 0.28205130 0 1 32626769 rs71785581 CTTCCA C 9102 PASS INDEL;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0888;AVGPOST=0.9955;RSQ=0.9783;ERATE=0.0007;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 32626783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6627;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32626828 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.915;LDAF=0.0148;AVGPOST=0.9964;RSQ=0.9051;ERATE=0.0006;THETA=0.0016;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32626869 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.4001;ERATE=0.0006;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32626928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6819;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32627059 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9788;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32627215 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32627351 . CT C 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4902;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32627440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7485;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32627522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32627625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4363;AVGPOST=0.9966;RSQ=0.9950;ERATE=0.0004;THETA=0.0003;AC=952;AN=2184 GT:DS:GL:BD 0.43589744 0 1 32627636 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.7136;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32627639 . T TC 327 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8332;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32627677 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5926;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32627764 . A ATCATG 409 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32627820 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6660;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32627830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32627843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32627893 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32627910 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5743;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32627916 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6425;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32627942 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0139;AVGPOST=0.9982;RSQ=0.9490;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32627966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0081;AVGPOST=0.9972;RSQ=0.8688;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32628015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6034;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32628038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7196;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0005;THETA=0.0002;AC=1572;AN=2184 GT:DS:GL:BD 0.71978021 1 1 32628040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32628196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7240;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32628238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.6597;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32628282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4174;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32628453 . G GA 475 PASS INDEL;BAVGPOST=0.993;BRSQ=0.648;LDAF=0.0190;AVGPOST=0.9762;RSQ=0.4885;ERATE=0.0051;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32628525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9618;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32628560 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32628564 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32628906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32628952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6244;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32628963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9685;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32628984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7767;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32629303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.2152;AVGPOST=0.9744;RSQ=0.9462;ERATE=0.0008;THETA=0.0004;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 32629356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.9792;AVGPOST=0.9993;RSQ=0.9877;ERATE=0.0002;THETA=0.0018;AC=2139;AN=2184 GT:DS:GL:BD 0.97939563 1 1 32629525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32629547 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.8033;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32629633 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8613;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32629667 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9997;RSQ=0.9925;ERATE=0.0002;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32629671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9517;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32629869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32629884 . CTTAG C 736 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0058;AVGPOST=0.9989;RSQ=0.9220;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32629960 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9391;ERATE=0.0002;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32630001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5659;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32630085 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9184;ERATE=0.0002;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32630285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0060;AVGPOST=0.9988;RSQ=0.9158;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32630434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9598;ERATE=0.0002;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32630799 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8070;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32630810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0109;AVGPOST=0.9988;RSQ=0.9583;ERATE=0.0003;THETA=0.0018;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32630827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.966;LDAF=0.1739;AVGPOST=0.9834;RSQ=0.9586;ERATE=0.0045;THETA=0.0010;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 32630873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1713;AVGPOST=0.9985;RSQ=0.9958;ERATE=0.0003;THETA=0.0013;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 32630905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6772;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32631006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.8213;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32631061 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32631160 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1744;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0007;THETA=0.0003;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 32631186 . GTGT G 152 PASS INDEL;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5703;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32631219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1740;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0006;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 32631314 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8933;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32631339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9388;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32631360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6204;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32631479 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.8025;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32631552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0087;AVGPOST=0.9995;RSQ=0.9755;ERATE=0.0002;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32631572 . C CA 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6296;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32631701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32631716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32631759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32631808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9278;ERATE=0.0002;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32631809 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9885;ERATE=0.0004;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32631830 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1745;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 32631893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.8021;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32631900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8739;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32631966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1720;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 32632033 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1740;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0012;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 32632173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7132;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632189 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9872;ERATE=0.0002;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32632215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32632227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9935;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32632328 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32632335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32632366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632389 . CT C 274 PASS INDEL;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8245;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32632497 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9067;ERATE=0.0002;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32632533 rs61215795 T TTC 18242 PASS INDEL;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1617;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 32632543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632571 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0264;AVGPOST=0.9994;RSQ=0.9899;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32632588 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0128;AVGPOST=0.9971;RSQ=0.9130;ERATE=0.0005;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32632655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32632698 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632734 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32632831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1719;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0004;THETA=0.0009;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 32632944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6610;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32633030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32633110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9074;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32633132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0060;AVGPOST=0.9992;RSQ=0.9413;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32633141 . AAGAG A 140 PASS INDEL;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0065;AVGPOST=0.9978;RSQ=0.8602;ERATE=0.0005;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32633157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.863;LDAF=0.0213;AVGPOST=0.9895;RSQ=0.8094;ERATE=0.0023;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32633171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32633182 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7511;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32633246 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0265;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0002;THETA=0.0008;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32633268 . C CA 66 PASS INDEL;BAVGPOST=0.996;BRSQ=0.618;LDAF=0.0094;AVGPOST=0.9916;RSQ=0.6428;ERATE=0.0024;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32633293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32633307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6869;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32633313 . CAAAT C 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7191;ERATE=0.0002;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32633354 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32633399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32633576 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0979;AVGPOST=0.9977;RSQ=0.9911;ERATE=0.0004;THETA=0.0006;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 32633577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32633650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32633702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32633703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0266;AVGPOST=0.9993;RSQ=0.9888;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32633774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0004;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32633867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.757;LDAF=0.0213;AVGPOST=0.9824;RSQ=0.6600;ERATE=0.0005;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32634297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3698;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0004;THETA=0.0017;AC=807;AN=2184 GT:DS:GL:BD 0.36950549 0 1 32634330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32634353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32634529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.4973;AVGPOST=0.9929;RSQ=0.9890;ERATE=0.0139;THETA=0.0006;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 32634659 . T TGG 920 PASS INDEL;BAVGPOST=0.901;BRSQ=0.503;LDAF=0.1723;AVGPOST=0.8151;RSQ=0.4620;ERATE=0.0387;THETA=0.0005;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 32634664 . G GT 49 PASS INDEL;BAVGPOST=0.993;BRSQ=0.432;LDAF=0.0157;AVGPOST=0.9783;RSQ=0.4611;ERATE=0.0031;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32634665 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.975;LDAF=0.4731;AVGPOST=0.9834;RSQ=0.9716;ERATE=0.0533;THETA=0.0005;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 32634667 rs35250023 GTATT G 28178 PASS INDEL;BAVGPOST=0.857;BRSQ=0.732;LDAF=0.4020;AVGPOST=0.8475;RSQ=0.7564;ERATE=0.0495;THETA=0.0023;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 32634698 rs56123159 T TG 438 PASS INDEL;BAVGPOST=0.949;BRSQ=0.473;LDAF=0.0806;AVGPOST=0.9016;RSQ=0.4787;ERATE=0.0131;THETA=0.0011;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32634701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32634861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5341;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0005;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32634967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5344;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0004;THETA=0.0009;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32634988 . CAAAT C 190 PASS INDEL;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6377;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32635036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7119;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32635086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5342;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0006;THETA=0.0011;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32635142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.802;LDAF=0.0054;AVGPOST=0.9958;RSQ=0.7158;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32635162 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0110;AVGPOST=0.9984;RSQ=0.9334;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32635176 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.732;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8669;ERATE=0.0006;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32635259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0239;AVGPOST=0.9987;RSQ=0.9821;ERATE=0.0003;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32635260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5360;AVGPOST=0.9947;RSQ=0.9915;ERATE=0.0026;THETA=0.0004;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 32635406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0100;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32635426 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32635455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32635487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8124;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32635511 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3729;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0004;THETA=0.0002;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 32635555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5342;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32635575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32635599 rs66781233 TTTTTG T 4528 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0231;AVGPOST=0.9989;RSQ=0.9799;ERATE=0.0005;THETA=0.0007;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32635619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32635686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32635703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32635729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5343;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0003;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32635790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.5329;AVGPOST=0.9957;RSQ=0.9925;ERATE=0.0010;THETA=0.0021;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 32636235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.668;LDAF=0.0154;AVGPOST=0.9898;RSQ=0.7511;ERATE=0.0006;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32636242 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5324;AVGPOST=0.9960;RSQ=0.9939;ERATE=0.0004;THETA=0.0009;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 32636334 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3725;AVGPOST=0.9962;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 32636337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9745;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32636520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32636561 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0114;AVGPOST=0.9982;RSQ=0.9470;ERATE=0.0014;THETA=0.0018;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32636572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32636599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32636616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32636636 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32636640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32636657 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32636720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9821;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32636736 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32636767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1194;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0013;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 32636823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32636918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5346;AVGPOST=0.9992;RSQ=0.9989;ERATE=0.0004;THETA=0.0003;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32636959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0229;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32637015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32637171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0184;AVGPOST=0.9997;RSQ=0.9918;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32637185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32637326 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32637429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32637431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9992;RSQ=0.9300;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32637487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32637496 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.8894;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32637499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0099;AVGPOST=0.9993;RSQ=0.9677;ERATE=0.0003;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32637607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5632;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=1229;AN=2184 GT:DS:GL:BD 0.56272894 1 1 32637655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32637694 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5347;AVGPOST=0.9989;RSQ=0.9986;ERATE=0.0004;THETA=0.0003;AC=1167;AN=2184 GT:DS:GL:BD 0.53434068 1 1 32637708 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1691;AVGPOST=0.9950;RSQ=0.9871;ERATE=0.0020;THETA=0.0029;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 32637757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32637913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32637952 rs3831074 GGTCTGT G 15322 PASS INDEL;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.1024;AVGPOST=0.9981;RSQ=0.9905;ERATE=0.0006;THETA=0.0004;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 32638107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1024;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0003;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 32638183 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32638184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9235;ERATE=0.0004;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32638186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32638394 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638410 . GA G 21 PASS INDEL;BAVGPOST=0.985;BRSQ=0.355;LDAF=0.0189;AVGPOST=0.9732;RSQ=0.4404;ERATE=0.0026;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32638443 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638478 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32638575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3733;AVGPOST=0.9971;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 32638631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5102;AVGPOST=0.9954;RSQ=0.9937;ERATE=0.0004;THETA=0.0190;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 32638656 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9516;ERATE=0.0003;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32638706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6155;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32638750 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.965;LDAF=0.1531;AVGPOST=0.9889;RSQ=0.9715;ERATE=0.0011;THETA=0.0004;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 32638850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9462;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32638885 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.5863;AVGPOST=0.9846;RSQ=0.9778;ERATE=0.0018;THETA=0.0003;AC=1274;AN=2184 GT:DS:GL:BD 0.58333331 1 1 32638915 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32638941 . T TA 9146 PASS INDEL;BAVGPOST=0.926;BRSQ=0.870;LDAF=0.4976;AVGPOST=0.9109;RSQ=0.8681;ERATE=0.0087;THETA=0.0012;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 32638957 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.958;LDAF=0.5433;AVGPOST=0.9623;RSQ=0.9434;ERATE=0.0054;THETA=0.0028;AC=1193;AN=2184 GT:DS:GL:BD 0.54624540 1 1 32638967 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0168;AVGPOST=0.9956;RSQ=0.9110;ERATE=0.0004;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32638989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.929;LDAF=0.4287;AVGPOST=0.9619;RSQ=0.9409;ERATE=0.0054;THETA=0.0004;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 32639048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.933;LDAF=0.5545;AVGPOST=0.9587;RSQ=0.9376;ERATE=0.0054;THETA=0.0019;AC=1219;AN=2184 GT:DS:GL:BD 0.55815017 1 1 32639051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.930;LDAF=0.1765;AVGPOST=0.9698;RSQ=0.9272;ERATE=0.0051;THETA=0.0004;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 32639062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9576;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32639198 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.885;LDAF=0.0188;AVGPOST=0.9942;RSQ=0.8878;ERATE=0.0005;THETA=0.0010;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32639209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4935;ERATE=0.0003;THETA=0.0131;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32639214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5087;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32639228 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2380;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0021;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 32639509 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6064;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32639577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32639636 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32639648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0090;AVGPOST=0.9978;RSQ=0.8955;ERATE=0.0004;THETA=0.0012;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32639671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.661;LDAF=0.0034;AVGPOST=0.9963;RSQ=0.5545;ERATE=0.0005;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32639699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7624;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32639772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5959;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32639791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3093;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32639792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3138;AVGPOST=0.9949;RSQ=0.9910;ERATE=0.0006;THETA=0.0009;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 32639870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5052;ERATE=0.0004;THETA=0.0105;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32639892 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8333;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32640358 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9438;ERATE=0.0003;THETA=0.0055;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32640493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9645;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32640589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32640769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32640795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0861;ERATE=0.0003;THETA=0.0018;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32640805 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1585;AVGPOST=0.9973;RSQ=0.9934;ERATE=0.0004;THETA=0.0042;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 32640845 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1648;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 32641052 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32641063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32641087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3303;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 32641121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7520;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32641122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6427;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32641388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6699;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0004;THETA=0.0006;AC=1466;AN=2184 GT:DS:GL:BD 0.67124540 1 1 32641515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32641530 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32641604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6468;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32641718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9997;RSQ=0.9962;ERATE=0.0003;THETA=0.0013;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32641743 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0603;AVGPOST=0.9990;RSQ=0.9940;ERATE=0.0003;THETA=0.0004;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 32641747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9847;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32641797 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7536;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32641820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5396;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32641861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7857;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32641956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.9999;AVGPOST=0.9997;RSQ=0.0831;ERATE=0.0003;THETA=0.0006;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 32642004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5328;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32642083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8016;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32642228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8903;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32642247 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7565;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32642268 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9210;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32642297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32642333 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9548;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32642356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32642385 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2285;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=500;AN=2184 GT:DS:GL:BD 0.22893773 0 1 32642432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0023;AVGPOST=0.9962;RSQ=0.3828;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32642506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.914;LDAF=0.6135;AVGPOST=0.9017;RSQ=0.8575;ERATE=0.0106;THETA=0.0003;AC=1396;AN=2184 GT:DS:GL:BD 0.63919413 1 1 32642542 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0153;AVGPOST=0.9933;RSQ=0.8346;ERATE=0.0008;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32642561 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.908;LDAF=0.6276;AVGPOST=0.9328;RSQ=0.9078;ERATE=0.0045;THETA=0.0007;AC=1410;AN=2184 GT:DS:GL:BD 0.64560437 1 1 32642572 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.813;LDAF=0.0134;AVGPOST=0.9957;RSQ=0.8727;ERATE=0.0004;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32642619 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.3983;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32642706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0080;AVGPOST=0.9985;RSQ=0.9207;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32642735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6678;AVGPOST=0.9949;RSQ=0.9911;ERATE=0.0008;THETA=0.0005;AC=1462;AN=2184 GT:DS:GL:BD 0.66941392 1 1 32642760 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4897;ERATE=0.0004;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32642877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4416;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32643278 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9524;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32643477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32643510 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32643518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9584;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32643524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9998;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32643544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7728;ERATE=0.0010;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32643825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0630;AVGPOST=0.9989;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32643849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6707;ERATE=0.0010;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32643904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0034;AVGPOST=0.9989;RSQ=0.8682;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32644045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32644049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32644073 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7085;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32644109 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.9057;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32644151 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0382;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32644217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5402;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32644255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0088;AVGPOST=0.9993;RSQ=0.9674;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32644266 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32644280 . TC T 1853 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0107;AVGPOST=0.9994;RSQ=0.9784;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32644407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32644495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32644541 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6433;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32644654 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7267;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32644689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0218;AVGPOST=0.9990;RSQ=0.9821;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32644694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32644705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7986;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32644716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0356;AVGPOST=0.9991;RSQ=0.9901;ERATE=0.0004;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 32644890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9301;ERATE=0.0014;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32645020 . GTGTCCATTAGAT G 655 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8507;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32645076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32645165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4478;AVGPOST=0.9963;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 32645210 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32645270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0004;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32645333 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0027;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32645606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5332;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32645687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6090;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32646082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8415;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32646110 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4388;AVGPOST=0.9972;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=961;AN=2184 GT:DS:GL:BD 0.44001833 0 1 32646259 . AGTT A 184 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32646548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32646607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5794;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0102;AVGPOST=0.9996;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32646724 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32646731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4439;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32646903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0568;AVGPOST=0.9994;RSQ=0.9951;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 32646927 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9630;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32646938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0211;AVGPOST=0.9987;RSQ=0.9800;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32646981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32647055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.725;LDAF=0.0042;AVGPOST=0.9947;RSQ=0.5238;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32647351 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.941;LDAF=0.4981;AVGPOST=0.9471;RSQ=0.9242;ERATE=0.0157;THETA=0.0004;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 32647396 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5992;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32647435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6327;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32647469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0096;AVGPOST=0.9993;RSQ=0.9663;ERATE=0.0004;THETA=0.0013;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32647474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32647480 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.886;LDAF=0.0242;AVGPOST=0.9980;RSQ=0.9601;ERATE=0.0005;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32647565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0344;AVGPOST=0.9984;RSQ=0.9810;ERATE=0.0004;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32647583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4376;AVGPOST=0.9945;RSQ=0.9914;ERATE=0.0007;THETA=0.0005;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 32647660 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32647719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8594;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32647849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32647913 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32647914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9989;RSQ=0.9776;ERATE=0.0003;THETA=0.0011;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32647944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5518;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32648068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32648320 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7633;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32648409 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9427;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32648673 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0236;AVGPOST=0.9993;RSQ=0.9871;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32648768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32648813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0352;AVGPOST=0.9990;RSQ=0.9898;ERATE=0.0003;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 32648879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32649071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5426;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32649211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7276;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32649282 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32649534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.614;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7566;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32649633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32649735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5955;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32649756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32649781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.8877;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32649800 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32649866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1612;AVGPOST=0.9986;RSQ=0.9956;ERATE=0.0004;THETA=0.0006;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 32650054 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5302;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32650140 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7459;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32650158 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1597;AVGPOST=0.9985;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 32650216 . T TC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0024;AVGPOST=0.9966;RSQ=0.5108;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32650237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1194;AVGPOST=0.9981;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32650242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32650247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32650276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32650416 rs112105988 CT C 1196 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0105;AVGPOST=0.9994;RSQ=0.9740;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32650534 . ACTT A 336 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32650561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5186;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32650564 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9034;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32650587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7721;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32650614 . TTTACA T 1733 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9994;RSQ=0.9742;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32650620 . TAC T 145 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0081;AVGPOST=0.9921;RSQ=0.6865;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32650627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0327;AVGPOST=0.9985;RSQ=0.9810;ERATE=0.0004;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32650682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8364;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32650692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32650704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0067;AVGPOST=0.9989;RSQ=0.9210;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32650839 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7103;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32650862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32650865 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32650890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.8899;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32650946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32650984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6193;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=1353;AN=2184 GT:DS:GL:BD 0.61950547 1 1 32651060 . CAACA C 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32651075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8865;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32651143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6915;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32651149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32651233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8031;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32651317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32651443 . C CTT 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6883;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32651595 . AAC A 9421 PASS INDEL;BAVGPOST=0.989;BRSQ=0.940;LDAF=0.0979;AVGPOST=0.9947;RSQ=0.9758;ERATE=0.0007;THETA=0.0004;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 32651662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9764;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32651818 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32651852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3492;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32651896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32651907 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4890;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32651979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0040;AVGPOST=0.9964;RSQ=0.6785;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32652045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5816;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32652078 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9395;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32652176 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.972;LDAF=0.1532;AVGPOST=0.9954;RSQ=0.9860;ERATE=0.0007;THETA=0.0003;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 32652182 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.972;LDAF=0.1524;AVGPOST=0.9971;RSQ=0.9910;ERATE=0.0003;THETA=0.0003;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 32652184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8165;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32652207 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32652439 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1508;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 32652441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.980;LDAF=0.1146;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0004;THETA=0.0001;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 32652524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32652648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32652661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9645;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32652824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9987;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32652877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1504;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 32652885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32652902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32652912 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9998;RSQ=0.0748;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32652948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7924;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32653016 . TA T 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6898;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32653018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5532;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32653054 . TA T 661 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9985;RSQ=0.9118;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32653064 . TTAA T 916 PASS INDEL;BAVGPOST=0.960;BRSQ=0.814;LDAF=0.1302;AVGPOST=0.9649;RSQ=0.8878;ERATE=0.0009;THETA=0.0003;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 32653098 . TAATAA T 13107 PASS INDEL;BAVGPOST=0.970;BRSQ=0.877;LDAF=0.1543;AVGPOST=0.9895;RSQ=0.9664;ERATE=0.0005;THETA=0.0005;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 32653099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4466;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32653399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1027;AVGPOST=0.9982;RSQ=0.9924;ERATE=0.0003;THETA=0.0003;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 32653450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1529;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 32653460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.942;LDAF=0.1325;AVGPOST=0.9915;RSQ=0.9730;ERATE=0.0003;THETA=0.0006;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32653478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7391;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32653596 . G GGA 512 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.6838;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32653677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32653766 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.7009;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32653863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8192;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32653929 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0203;AVGPOST=0.9987;RSQ=0.9720;ERATE=0.0003;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32653945 . TGTTA T 143 PASS INDEL;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0088;AVGPOST=0.9871;RSQ=0.4688;ERATE=0.0011;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32654044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6835;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32654113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32654189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9191;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32654233 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2529;AVGPOST=0.9974;RSQ=0.9944;ERATE=0.0006;THETA=0.0004;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 32654298 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7661;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32654372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9993;RSQ=0.9562;ERATE=0.0003;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32654384 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8259;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32654447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0484;AVGPOST=0.9989;RSQ=0.9918;ERATE=0.0004;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32654504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0046;AVGPOST=0.9976;RSQ=0.8021;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32654637 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32654697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32654722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32654773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5177;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32654781 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9426;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32654975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9641;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32655132 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0986;AVGPOST=0.9982;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 32655147 . CTAATA C 529 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8805;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32655164 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3215;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0005;THETA=0.0005;AC=701;AN=2184 GT:DS:GL:BD 0.32097068 0 1 32655183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32655320 . ATC A 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5174;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655540 . CT C 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8807;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32655568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32655627 . CG C 219 PASS INDEL;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32655707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.8966;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32655730 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5423;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655766 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4030;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6114;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=1336;AN=2184 GT:DS:GL:BD 0.61172163 1 1 32655864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5836;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9995;RSQ=0.9867;ERATE=0.0002;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32655885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0232;AVGPOST=0.9984;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32655898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5060;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655932 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32655943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0956;AVGPOST=0.9984;RSQ=0.9932;ERATE=0.0005;THETA=0.0002;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 32655967 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32656049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32656143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8954;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32656159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9837;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32656278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32656312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7214;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32656424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6463;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32656434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32656476 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3255;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0003;THETA=0.0002;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 32656484 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0002;THETA=0.0012;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32656489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9527;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32656490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8321;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32656541 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8946;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32656583 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32656619 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5321;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32656653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4581;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32656792 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7793;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32656899 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2218;AVGPOST=0.9978;RSQ=0.9944;ERATE=0.0004;THETA=0.0002;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 32656929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2169;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32656971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0158;AVGPOST=0.9988;RSQ=0.9759;ERATE=0.0004;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32657028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0091;AVGPOST=0.9990;RSQ=0.9596;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32657071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0339;AVGPOST=0.9987;RSQ=0.9878;ERATE=0.0002;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32657097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.0832;AVGPOST=0.9962;RSQ=0.9834;ERATE=0.0004;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 32657172 . CATT C 821 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0085;AVGPOST=0.9994;RSQ=0.9688;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32657243 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6411;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32657244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.5729;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32657266 . GCAA G 345 PASS INDEL;BAVGPOST=0.985;BRSQ=0.667;LDAF=0.0407;AVGPOST=0.9524;RSQ=0.5129;ERATE=0.0122;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32657377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32657575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4994;AVGPOST=0.9965;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=1090;AN=2184 GT:DS:GL:BD 0.49908423 0 1 32657595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8790;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32657631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9920;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32657634 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6265;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32657818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6613;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32657834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.969;LDAF=0.1104;AVGPOST=0.9915;RSQ=0.9693;ERATE=0.0006;THETA=0.0011;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 32658160 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7880;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32658230 . GT G 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5539;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658255 . T TTAA 703 PASS INDEL;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32658310 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6334;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658397 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0153;AVGPOST=0.9983;RSQ=0.9557;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32658527 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0031;AVGPOST=0.9972;RSQ=0.6471;ERATE=0.0008;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32658573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658584 . AG A 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658639 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658675 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7133;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32658716 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32658737 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5450;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32658939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6791;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32659053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9741;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32659119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0002;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32659367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8406;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32659383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.7163;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32659386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1117;AVGPOST=0.9988;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 32659464 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7059;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32659513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8629;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32659551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5169;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32659600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8469;ERATE=0.0007;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32659629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6579;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0006;THETA=0.0003;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 32659757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4667;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32659908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0073;AVGPOST=0.9977;RSQ=0.8727;ERATE=0.0006;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32659933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6582;AVGPOST=0.9979;RSQ=0.9962;ERATE=0.0007;THETA=0.0002;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 32659978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6578;AVGPOST=0.9976;RSQ=0.9957;ERATE=0.0006;THETA=0.0008;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 32660016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32660232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6584;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 32660263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5691;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32660287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6748;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32660447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.4988;ERATE=0.0009;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32660450 . ATTTG A 977 PASS INDEL;BAVGPOST=0.997;BRSQ=0.699;LDAF=0.0081;AVGPOST=0.9928;RSQ=0.6655;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32660527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6472;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32660573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9803;ERATE=0.0003;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32660782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5085;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32660884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32660918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9676;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32661123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1491;AVGPOST=0.9982;RSQ=0.9941;ERATE=0.0004;THETA=0.0007;AC=325;AN=2184 GT:DS:GL:BD 0.14880952 0 1 32661200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6684;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32661201 . ATTAG A 206 PASS INDEL;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0056;AVGPOST=0.9964;RSQ=0.7236;ERATE=0.0006;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32661204 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9453;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32661236 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.498;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32661260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32661354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0031;AVGPOST=0.9974;RSQ=0.6941;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32661457 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7580;ERATE=0.0005;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32661544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0251;AVGPOST=0.9992;RSQ=0.9849;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32661562 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0039;AVGPOST=0.9955;RSQ=0.5593;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32661634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0027;AVGPOST=0.9955;RSQ=0.3286;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32661727 . C CT 15 PASS INDEL;BAVGPOST=0.994;BRSQ=0.428;LDAF=0.0160;AVGPOST=0.9807;RSQ=0.4911;ERATE=0.0023;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32661742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0064;AVGPOST=0.9993;RSQ=0.9540;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32661835 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9985;RSQ=0.9335;ERATE=0.0004;THETA=0.0019;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32661855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6575;AVGPOST=0.9952;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=1435;AN=2184 GT:DS:GL:BD 0.65705127 1 1 32661876 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6585;AVGPOST=0.9942;RSQ=0.9906;ERATE=0.0006;THETA=0.0005;AC=1437;AN=2184 GT:DS:GL:BD 0.65796703 1 1 32661894 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0039;AVGPOST=0.9942;RSQ=0.3954;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32661923 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.715;BRSQ=0.325;LDAF=0.3029;AVGPOST=0.7223;RSQ=0.4316;ERATE=0.0340;THETA=0.0004;AC=515;AN=2184 GT:DS:GL:BD 0.23580585 0 1 32662120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.720;BRSQ=0.530;LDAF=0.4356;AVGPOST=0.7690;RSQ=0.5868;ERATE=0.0360;THETA=0.0003;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 32662143 . T TTTCCTTCCTTCCTTCCTTCCTTCCTTCC 15799 PASS INDEL;BAVGPOST=0.925;BRSQ=0.864;LDAF=0.6140;AVGPOST=0.8158;RSQ=0.7095;ERATE=0.0153;THETA=0.0005;AC=1375;AN=2184 GT:DS:GL:BD 0.62957877 1 1 32662143 rs112749943 TTTCC T 18731 PASS INDEL;BAVGPOST=0.981;BRSQ=0.964;LDAF=0.6455;AVGPOST=0.9755;RSQ=0.9641;ERATE=0.0011;THETA=0.0007;AC=1406;AN=2184 GT:DS:GL:BD 0.64377290 1 1 32662268 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.737;LDAF=0.0480;AVGPOST=0.9778;RSQ=0.8194;ERATE=0.0005;THETA=0.0007;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 32662291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0043;AVGPOST=0.9968;RSQ=0.7284;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32662300 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5395;ERATE=0.0005;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32662355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0245;AVGPOST=0.9994;RSQ=0.9882;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32662440 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8684;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32662453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4917;AVGPOST=0.9893;RSQ=0.9842;ERATE=0.0017;THETA=0.0004;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 32662510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4808;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32662700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4793;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32662757 . AAT A 67 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0230;AVGPOST=0.9961;RSQ=0.9379;ERATE=0.0004;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32662788 . TATA T 2386 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0231;AVGPOST=0.9959;RSQ=0.9349;ERATE=0.0003;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32662790 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.566;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6501;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32662818 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32662887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0003;THETA=0.0051;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32663002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1661;AVGPOST=0.9980;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 32663055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.6999;ERATE=0.0009;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32663076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32663200 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9761;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32663295 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32663353 . TAAA T 577 PASS INDEL;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0062;AVGPOST=0.9922;RSQ=0.5075;ERATE=0.0011;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32663400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0039;AVGPOST=0.9961;RSQ=0.6373;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32663408 . TA T 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4211;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32663589 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8957;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32663656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.653;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6842;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32663769 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.765;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8773;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32663916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2162;AVGPOST=0.9892;RSQ=0.9751;ERATE=0.0011;THETA=0.0004;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32663936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6574;AVGPOST=0.9956;RSQ=0.9933;ERATE=0.0004;THETA=0.0007;AC=1438;AN=2184 GT:DS:GL:BD 0.65842491 1 1 32663979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8831;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32664011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.587;LDAF=0.0073;AVGPOST=0.9915;RSQ=0.5463;ERATE=0.0010;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32664309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.267;LDAF=0.0067;AVGPOST=0.9876;RSQ=0.2120;ERATE=0.0009;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32664333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9816;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32664550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0248;AVGPOST=0.9987;RSQ=0.9780;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32664612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.7817;ERATE=0.0005;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32664727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7514;ERATE=0.0005;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32664729 . TC T 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5218;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32664755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0002;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32664819 . G GA 228 PASS INDEL;BAVGPOST=0.965;BRSQ=0.516;LDAF=0.0705;AVGPOST=0.9183;RSQ=0.4946;ERATE=0.0153;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32664906 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0126;AVGPOST=0.9990;RSQ=0.9727;ERATE=0.0003;THETA=0.0044;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32664926 . A AC 502 PASS INDEL;BAVGPOST=0.995;BRSQ=0.760;LDAF=0.0137;AVGPOST=0.9934;RSQ=0.8202;ERATE=0.0006;THETA=0.0030;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32665069 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.742;LDAF=0.4264;AVGPOST=0.8711;RSQ=0.7352;ERATE=0.0751;THETA=0.0009;AC=912;AN=2184 GT:DS:GL:BD 0.41758242 0 1 32665074 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.944;LDAF=0.6103;AVGPOST=0.9614;RSQ=0.9384;ERATE=0.0071;THETA=0.0010;AC=1342;AN=2184 GT:DS:GL:BD 0.61446887 1 1 32665098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4866;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32665125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.425;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5112;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32665149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.3946;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32665229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4670;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32665261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.4335;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32665291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4916;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32665391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7102;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32665399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32665479 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32665575 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7012;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32665728 . AAG A 272 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0045;AVGPOST=0.9965;RSQ=0.6919;ERATE=0.0008;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32665732 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0302;AVGPOST=0.9944;RSQ=0.9331;ERATE=0.0005;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32665746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0094;AVGPOST=0.9974;RSQ=0.9001;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32665758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7826;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32665848 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.644;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7734;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32666178 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.803;LDAF=0.5684;AVGPOST=0.9085;RSQ=0.8723;ERATE=0.0015;THETA=0.0011;AC=1291;AN=2184 GT:DS:GL:BD 0.59111720 1 1 32666214 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.802;LDAF=0.5707;AVGPOST=0.8865;RSQ=0.8403;ERATE=0.0038;THETA=0.0032;AC=1294;AN=2184 GT:DS:GL:BD 0.59249085 1 1 32666215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9657;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32666281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.377;LDAF=0.0040;AVGPOST=0.9933;RSQ=0.3135;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32666326 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9464;ERATE=0.0004;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32666624 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32666708 . ATT A 1489 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9983;RSQ=0.9545;ERATE=0.0004;THETA=0.0011;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32666713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.811;LDAF=0.0099;AVGPOST=0.9964;RSQ=0.8601;ERATE=0.0005;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32666967 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0719;AVGPOST=0.9987;RSQ=0.9934;ERATE=0.0003;THETA=0.0011;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 32667002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0136;AVGPOST=0.9999;RSQ=0.9953;ERATE=0.0002;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32667149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0002;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32667182 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0366;AVGPOST=0.9997;RSQ=0.9968;ERATE=0.0002;THETA=0.0009;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 32667193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32667453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32667538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32667551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32667599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0002;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32667709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8911;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32667885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0043;AVGPOST=0.9967;RSQ=0.6747;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32668133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32668155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9988;RSQ=0.9511;ERATE=0.0003;THETA=0.0011;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32668192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=0.9968;ERATE=0.0002;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32668199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7100;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32668314 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4318;AVGPOST=0.9937;RSQ=0.9908;ERATE=0.0006;THETA=0.0006;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 32668318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7531;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32668324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8092;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32668414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7196;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32668553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0124;AVGPOST=0.9990;RSQ=0.9677;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32668641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32668704 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9993;RSQ=0.9687;ERATE=0.0002;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32668726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4802;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32668742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0260;AVGPOST=0.9988;RSQ=0.9825;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32668911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9131;ERATE=0.0007;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32669004 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0265;AVGPOST=0.9985;RSQ=0.9773;ERATE=0.0002;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32669145 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8015;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32669210 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5372;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669413 . AT A 343 PASS INDEL;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8311;ERATE=0.0005;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32669437 . C CTA 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0121;AVGPOST=0.9968;RSQ=0.8963;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32669552 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6085;AVGPOST=0.9936;RSQ=0.9892;ERATE=0.0012;THETA=0.0024;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 32669554 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669608 . CT C 195 PASS INDEL;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0077;AVGPOST=0.9981;RSQ=0.8959;ERATE=0.0006;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32669720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32669721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0064;AVGPOST=0.9976;RSQ=0.8727;ERATE=0.0002;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32669854 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32669965 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32669986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32669997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9989;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32670049 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6944;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32670058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1332;AVGPOST=0.9980;RSQ=0.9931;ERATE=0.0003;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 32670255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2268;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0002;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 32670394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0190;AVGPOST=0.9995;RSQ=0.9884;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32670470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32670531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9343;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32670660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4025;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 32670665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7991;ERATE=0.0010;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32670671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9250;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32670684 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.4526;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32670734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5904;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32670810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32670883 . TC T 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32670968 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32670974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3706;AVGPOST=0.9970;RSQ=0.9954;ERATE=0.0006;THETA=0.0007;AC=806;AN=2184 GT:DS:GL:BD 0.36904761 0 1 32671022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1650;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0002;THETA=0.0005;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 32671177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.524;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9191;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32671430 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0028;AVGPOST=0.9978;RSQ=0.6539;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32671570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32671696 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6646;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32671698 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0193;AVGPOST=0.9970;RSQ=0.9439;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32671867 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.8856;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32671956 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9363;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32672083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8083;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7090;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672158 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6035;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32672171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32672218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.1979;AVGPOST=0.9920;RSQ=0.9801;ERATE=0.0003;THETA=0.0002;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 32672225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672260 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8117;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32672450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6098;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672549 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.6073;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672570 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1405;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0005;THETA=0.0007;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 32672723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3997;AVGPOST=0.9980;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=872;AN=2184 GT:DS:GL:BD 0.39926741 0 1 32672734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9524;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0002;THETA=0.0005;AC=2080;AN=2184 GT:DS:GL:BD 0.95238096 1 1 32672772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6004;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32672864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7353;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32672918 . A AT 229 PASS INDEL;BAVGPOST=0.991;BRSQ=0.540;LDAF=0.0193;AVGPOST=0.9787;RSQ=0.5517;ERATE=0.0024;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32673047 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9541;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32673135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1389;AVGPOST=0.9949;RSQ=0.9846;ERATE=0.0006;THETA=0.0003;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 32673168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8207;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32673366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0055;AVGPOST=0.9962;RSQ=0.7231;ERATE=0.0012;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32673391 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0113;AVGPOST=0.9989;RSQ=0.9577;ERATE=0.0002;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32673424 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32673478 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32673551 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4048;AVGPOST=0.9948;RSQ=0.9919;ERATE=0.0010;THETA=0.0004;AC=880;AN=2184 GT:DS:GL:BD 0.40293041 0 1 32673573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9207;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32673605 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4847;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32673659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2256;AVGPOST=0.9981;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 32673660 . A AC 34487 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9497;AVGPOST=0.9971;RSQ=0.9746;ERATE=0.0008;THETA=0.0002;AC=2075;AN=2184 GT:DS:GL:BD 0.95009160 1 1 32673692 rs5779539 C CT 107206 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9510;AVGPOST=0.9976;RSQ=0.9771;ERATE=0.0007;THETA=0.0007;AC=2079;AN=2184 GT:DS:GL:BD 0.95192307 1 1 32673696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7164;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32673815 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3836;AVGPOST=0.9953;RSQ=0.9922;ERATE=0.0005;THETA=0.0003;AC=833;AN=2184 GT:DS:GL:BD 0.38141027 0 1 32673885 . T TAA 426 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32673889 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4676;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32673916 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32673934 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0054;AVGPOST=0.9973;RSQ=0.7967;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32674118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0096;AVGPOST=0.9990;RSQ=0.9592;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32674123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8190;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32674275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7548;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32674316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0046;AVGPOST=0.9973;RSQ=0.7597;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32674638 . T TA 284 PASS INDEL;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0049;AVGPOST=0.9963;RSQ=0.7118;ERATE=0.0008;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32674665 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.7964;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32674746 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6301;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32674775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0318;AVGPOST=0.9991;RSQ=0.9876;ERATE=0.0003;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32675008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4875;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0005;THETA=0.0011;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 32675028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9579;ERATE=0.0002;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32675086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9552;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32675130 . AG A 1991 PASS INDEL;BAVGPOST=0.994;BRSQ=0.853;LDAF=0.0217;AVGPOST=0.9934;RSQ=0.8943;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32675251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4881;AVGPOST=0.9972;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 32675292 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.4971;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32675311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32675367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6721;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32675534 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5496;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32675583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7743;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32675671 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0823;AVGPOST=0.9979;RSQ=0.9878;ERATE=0.0004;THETA=0.0004;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 32675730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6899;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32675764 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9387;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32675822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4969;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32675844 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6789;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32675929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.6918;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32675935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32675992 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0112;AVGPOST=0.9981;RSQ=0.9415;ERATE=0.0002;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32676023 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32676077 . ACT A 329 PASS INDEL;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8250;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32676109 rs72226076 G GT 12212 PASS INDEL;BAVGPOST=0.946;BRSQ=0.893;LDAF=0.3234;AVGPOST=0.9017;RSQ=0.8324;ERATE=0.0234;THETA=0.0003;AC=678;AN=2184 GT:DS:GL:BD 0.31043956 0 1 32676159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0040;AVGPOST=0.9949;RSQ=0.5100;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32676276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.727;LDAF=0.2669;AVGPOST=0.9347;RSQ=0.8727;ERATE=0.0043;THETA=0.0003;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 32676428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.2015;AVGPOST=0.9800;RSQ=0.9580;ERATE=0.0019;THETA=0.0001;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 32676561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.485;LDAF=0.0967;AVGPOST=0.9269;RSQ=0.6978;ERATE=0.0032;THETA=0.0002;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 32677074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.661;LDAF=0.1041;AVGPOST=0.9381;RSQ=0.7902;ERATE=0.0005;THETA=0.0005;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 32677373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.890;LDAF=0.0154;AVGPOST=0.9981;RSQ=0.9438;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32677592 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.688;LDAF=0.0037;AVGPOST=0.9949;RSQ=0.4768;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32677647 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2436;AVGPOST=0.9942;RSQ=0.9884;ERATE=0.0006;THETA=0.0007;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 32677674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4772;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32677733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6657;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32677740 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6616;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32678068 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7705;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32678261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.962;LDAF=0.1956;AVGPOST=0.9898;RSQ=0.9761;ERATE=0.0008;THETA=0.0017;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 32678404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8333;ERATE=0.0004;THETA=0.0018;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32678506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0147;AVGPOST=0.9988;RSQ=0.9616;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32678650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5858;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32678683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9429;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32679055 . TA T 231 PASS INDEL;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0051;AVGPOST=0.9955;RSQ=0.6306;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32679154 . T TAA 243 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32679200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0095;AVGPOST=0.9991;RSQ=0.9591;ERATE=0.0002;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32679549 . T TG 388 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8672;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32679657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32679678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.850;LDAF=0.0084;AVGPOST=0.9966;RSQ=0.8336;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32679682 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9748;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32679839 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0100;AVGPOST=0.9976;RSQ=0.9227;ERATE=0.0005;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32679898 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0224;AVGPOST=0.9986;RSQ=0.9741;ERATE=0.0004;THETA=0.0010;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32679926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0221;AVGPOST=0.9990;RSQ=0.9834;ERATE=0.0003;THETA=0.0009;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32679927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0095;AVGPOST=0.9989;RSQ=0.9606;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32680004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4559;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32680157 . A AAG 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7066;ERATE=0.0010;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32680185 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5720;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32680196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9855;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32680227 . A AATT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32680445 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.799;LDAF=0.0094;AVGPOST=0.9923;RSQ=0.6882;ERATE=0.0031;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32680558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32680663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0439;AVGPOST=0.9964;RSQ=0.9731;ERATE=0.0004;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 32680925 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0100;AVGPOST=0.9975;RSQ=0.9100;ERATE=0.0006;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32680929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7664;ERATE=0.0008;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32681631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32681741 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.5014;AVGPOST=0.9916;RSQ=0.9851;ERATE=0.0008;THETA=0.0003;AC=1097;AN=2184 GT:DS:GL:BD 0.50228935 1 1 32681912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.4972;AVGPOST=0.9871;RSQ=0.9800;ERATE=0.0017;THETA=0.0030;AC=1089;AN=2184 GT:DS:GL:BD 0.49862638 0 1 32681967 . CA C 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4953;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32681988 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0038;AVGPOST=0.9990;RSQ=0.8989;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32682038 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0043;AVGPOST=0.9973;RSQ=0.7348;ERATE=0.0012;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32682048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32682051 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32682099 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6227;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32682127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.615;LDAF=0.0177;AVGPOST=0.9844;RSQ=0.6470;ERATE=0.0014;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32682189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.609;LDAF=0.0107;AVGPOST=0.9872;RSQ=0.5124;ERATE=0.0024;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32682375 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3407;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32682516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0267;AVGPOST=0.9926;RSQ=0.8891;ERATE=0.0024;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32682697 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8140;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32683021 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.4980;AVGPOST=0.9841;RSQ=0.9737;ERATE=0.0013;THETA=0.0004;AC=1099;AN=2184 GT:DS:GL:BD 0.50320512 1 1 32683144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.828;LDAF=0.0167;AVGPOST=0.9945;RSQ=0.8875;ERATE=0.0006;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32683243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.827;LDAF=0.0166;AVGPOST=0.9947;RSQ=0.8923;ERATE=0.0005;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32683246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3539;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32683259 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6763;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32683325 . TAAGGTTA T 5071 PASS INDEL;BAVGPOST=0.871;BRSQ=0.406;LDAF=0.1582;AVGPOST=0.8513;RSQ=0.5792;ERATE=0.0232;THETA=0.0004;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 32683516 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.948;LDAF=0.4901;AVGPOST=0.9790;RSQ=0.9686;ERATE=0.0013;THETA=0.0010;AC=1086;AN=2184 GT:DS:GL:BD 0.49725273 0 1 32683599 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0456;AVGPOST=0.9960;RSQ=0.9708;ERATE=0.0005;THETA=0.0007;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 32683721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0139;AVGPOST=0.9979;RSQ=0.9331;ERATE=0.0005;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32683750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0064;AVGPOST=0.9961;RSQ=0.7421;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32683925 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9990;RSQ=0.9820;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32684030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0036;AVGPOST=0.9976;RSQ=0.7225;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32684160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0022;AVGPOST=0.9966;RSQ=0.4248;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32684215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4594;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32684319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7210;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32684350 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7520;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32684353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5081;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32684511 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3859;AVGPOST=0.9946;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=844;AN=2184 GT:DS:GL:BD 0.38644689 0 1 32684529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4614;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32684628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9993;RSQ=0.9895;ERATE=0.0003;THETA=0.0033;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32684687 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.704;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3936;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32684816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0242;AVGPOST=0.9974;RSQ=0.9598;ERATE=0.0003;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32684831 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0157;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32684925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32684969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.521;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32685025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5529;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32685038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8847;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32685122 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9442;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32685213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0162;AVGPOST=0.9987;RSQ=0.9646;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32685253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9726;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32685288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8308;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32685308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6268;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32685345 rs67012335 AT A 10862 PASS INDEL;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1942;AVGPOST=0.9949;RSQ=0.9867;ERATE=0.0008;THETA=0.0007;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 32685391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1924;AVGPOST=0.9965;RSQ=0.9905;ERATE=0.0007;THETA=0.0007;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 32685636 rs34151320 ATT A 19709 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1966;AVGPOST=0.9910;RSQ=0.9787;ERATE=0.0012;THETA=0.0015;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 32685675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6946;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32685690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0629;AVGPOST=0.9994;RSQ=0.9958;ERATE=0.0003;THETA=0.0028;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32685794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9997;RSQ=0.9905;ERATE=0.0002;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32685882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9040;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32685978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8837;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32686112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5730;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32686119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7918;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32686195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3424;AVGPOST=0.9968;RSQ=0.9941;ERATE=0.0007;THETA=0.0003;AC=749;AN=2184 GT:DS:GL:BD 0.34294870 0 1 32686218 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0169;AVGPOST=0.9994;RSQ=0.9841;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32686267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7922;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32686279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8436;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32686287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6180;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32686469 . GC G 530 PASS INDEL;BAVGPOST=0.874;BRSQ=0.467;LDAF=0.1194;AVGPOST=0.8700;RSQ=0.5586;ERATE=0.0063;THETA=0.0005;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32686483 . TC T 470 PASS INDEL;BAVGPOST=0.885;BRSQ=0.465;LDAF=0.0984;AVGPOST=0.9005;RSQ=0.6097;ERATE=0.0013;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 32686491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2498;AVGPOST=0.9970;RSQ=0.9940;ERATE=0.0005;THETA=0.0003;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 32686561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3412;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 32686677 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7310;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32686748 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5452;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0007;THETA=0.0003;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 32686749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32686763 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.792;LDAF=0.0117;AVGPOST=0.9971;RSQ=0.8956;ERATE=0.0005;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32686795 . GTAGA G 353 PASS INDEL;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8538;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32686798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.7479;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32686813 . TTG T 56 PASS INDEL;BAVGPOST=0.991;BRSQ=0.620;LDAF=0.0196;AVGPOST=0.9793;RSQ=0.5785;ERATE=0.0072;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32687013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9382;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32687096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1330;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32687109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0002;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32687177 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32687182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8853;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32687211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0002;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32687253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1330;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0003;THETA=0.0015;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32687259 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0036;AVGPOST=0.9995;RSQ=0.9426;ERATE=0.0002;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32687264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3208;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 32687295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32687407 . AGTT A 464 PASS INDEL;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9303;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32687504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0285;AVGPOST=0.9974;RSQ=0.9651;ERATE=0.0008;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32687623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32687680 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32687704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.874;LDAF=0.0177;AVGPOST=0.9977;RSQ=0.9422;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32687721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32687926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32687968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9993;RSQ=0.9815;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32687969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0628;AVGPOST=0.9993;RSQ=0.9957;ERATE=0.0003;THETA=0.0024;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32687980 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6097;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32688031 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3412;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0004;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 32688118 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0263;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32688127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3431;AVGPOST=0.9929;RSQ=0.9879;ERATE=0.0014;THETA=0.0004;AC=750;AN=2184 GT:DS:GL:BD 0.34340659 0 1 32688153 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9986;RSQ=0.9086;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32688185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7436;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32688199 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3414;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0004;THETA=0.0003;AC=748;AN=2184 GT:DS:GL:BD 0.34249085 0 1 32688200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6156;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32688225 . CA C 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5496;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32688226 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0114;AVGPOST=0.9983;RSQ=0.9411;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32688265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0650;AVGPOST=0.9969;RSQ=0.9807;ERATE=0.0004;THETA=0.0002;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 32688305 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0002;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32688413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9659;ERATE=0.0004;THETA=0.0065;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32688424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0319;AVGPOST=0.9986;RSQ=0.9803;ERATE=0.0004;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32688580 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.861;LDAF=0.0153;AVGPOST=0.9978;RSQ=0.9439;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32688711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9992;RSQ=0.9619;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32688762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0002;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32688806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9229;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32688890 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0881;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0002;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 32688909 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7925;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32688929 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0068;AVGPOST=0.9977;RSQ=0.8486;ERATE=0.0008;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32689010 . CTTA C 372 PASS INDEL;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.7275;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32689012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0044;AVGPOST=0.9957;RSQ=0.6547;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32689195 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6817;AVGPOST=0.9947;RSQ=0.9908;ERATE=0.0006;THETA=0.0004;AC=1493;AN=2184 GT:DS:GL:BD 0.68360806 1 1 32689259 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0264;AVGPOST=0.9993;RSQ=0.9877;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32689365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0041;AVGPOST=0.9964;RSQ=0.7085;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32689366 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5127;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32689380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6918;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32689558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9652;ERATE=0.0002;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32689660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9129;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0002;THETA=0.0026;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 32689670 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32689677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7133;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32689786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9250;ERATE=0.0004;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32689845 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6765;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32689868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8620;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32689932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9572;ERATE=0.0002;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32690015 . GTAA G 190 PASS INDEL;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8158;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32690024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5330;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690093 . GT G 12534 PASS INDEL;BAVGPOST=0.992;BRSQ=0.437;LDAF=0.9787;AVGPOST=0.9694;RSQ=0.4456;ERATE=0.0037;THETA=0.0006;AC=2156;AN=2184 GT:DS:GL:BD 0.98717946 1 1 32690152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0022;AVGPOST=0.9972;RSQ=0.4773;ERATE=0.0010;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32690349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2849;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0007;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 32690366 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5163;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690400 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4006;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32690422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8683;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32690526 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690564 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5835;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32690609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8019;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32690948 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7584;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32691036 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.583;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32691051 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32691103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.584;LDAF=0.0039;AVGPOST=0.9957;RSQ=0.5680;ERATE=0.0010;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32691119 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32691131 . GAT G 232 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9409;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32691165 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32691315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8436;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32691354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7448;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32691469 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.9948;AVGPOST=0.9992;RSQ=0.9309;ERATE=0.0003;THETA=0.0007;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 32691480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32691868 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0646;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32692018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32692288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32692482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5879;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32692577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4764;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32692578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2844;AVGPOST=0.9971;RSQ=0.9949;ERATE=0.0005;THETA=0.0006;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 32692590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9465;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32692617 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0227;AVGPOST=0.9993;RSQ=0.9874;ERATE=0.0003;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32692662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9092;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32692685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7568;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32692711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5320;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32692821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0646;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32693027 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32693082 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0331;AVGPOST=0.9992;RSQ=0.9888;ERATE=0.0004;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32693092 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4686;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32693168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5353;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32693169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.7025;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32693193 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32693315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0225;AVGPOST=0.9996;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32693336 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8429;ERATE=0.0002;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32693403 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6738;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32693503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0644;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0002;THETA=0.0014;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32693583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0222;AVGPOST=0.9995;RSQ=0.9905;ERATE=0.0002;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32693599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0645;AVGPOST=0.9989;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32693672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8364;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32693692 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0018;AVGPOST=0.9980;RSQ=0.5611;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32693735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0120;AVGPOST=0.9989;RSQ=0.9607;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32693736 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0035;AVGPOST=0.9973;RSQ=0.7006;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32693784 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5688;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32693815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32693883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8934;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32693930 rs35173945 CT C 5952 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0644;AVGPOST=0.9991;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32693953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9407;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32693963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2325;AVGPOST=0.9980;RSQ=0.9957;ERATE=0.0002;THETA=0.0003;AC=507;AN=2184 GT:DS:GL:BD 0.23214285 0 1 32694066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8887;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32694195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32694301 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32694327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2334;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 32694385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32694519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8534;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32694583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7898;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32694732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4467;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32694735 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0003;THETA=0.0011;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32694744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32694782 . AG A 2875 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32694798 . GA G 155 PASS INDEL;BAVGPOST=0.950;BRSQ=0.425;LDAF=0.1136;AVGPOST=0.8727;RSQ=0.5043;ERATE=0.0014;THETA=0.0012;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 32694800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5003;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32694867 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0239;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32694880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4871;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32695008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32695031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.926;LDAF=0.0415;AVGPOST=0.9927;RSQ=0.9320;ERATE=0.0003;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 32695077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32695411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9987;RSQ=0.9353;ERATE=0.0005;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32695476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0496;AVGPOST=0.9992;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32695488 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8743;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32695540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0489;AVGPOST=0.9985;RSQ=0.9885;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 32695549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0496;AVGPOST=0.9991;RSQ=0.9929;ERATE=0.0003;THETA=0.0002;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32695555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.521;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5453;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32695654 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.739;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7245;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32695678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32695732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9421;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32695792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5662;AVGPOST=0.9968;RSQ=0.9955;ERATE=0.0006;THETA=0.0005;AC=1241;AN=2184 GT:DS:GL:BD 0.56822342 1 1 32695821 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7837;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32695852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0498;AVGPOST=0.9994;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32695892 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0497;AVGPOST=0.9995;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32695899 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0500;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32696159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32696169 rs60892768 A AT 8578 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0485;AVGPOST=0.9993;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32696171 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32696288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32696377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5658;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32696546 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5310;AVGPOST=0.9954;RSQ=0.9930;ERATE=0.0014;THETA=0.0004;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 32696547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5304;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0004;THETA=0.0004;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 32696653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6891;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32696679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0110;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32696727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5299;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 32696840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.982;LDAF=0.5281;AVGPOST=0.9962;RSQ=0.9935;ERATE=0.0009;THETA=0.0005;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 32696931 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32696966 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5663;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32696992 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5312;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0005;THETA=0.0004;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 32696998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5299;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0005;THETA=0.0001;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 32697024 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7913;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32697029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5403;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0008;THETA=0.0006;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 32697035 . TG T 148 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5870;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32697046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0080;AVGPOST=0.9979;RSQ=0.8972;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32697047 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.4632;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32697049 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0179;AVGPOST=0.9980;RSQ=0.9578;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32697084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0035;AVGPOST=0.9965;RSQ=0.6161;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32697172 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.5291;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32697191 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0272;AVGPOST=0.9989;RSQ=0.9847;ERATE=0.0003;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32697218 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32697270 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9159;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32697436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32697512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5311;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0005;THETA=0.0014;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 32697559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32697675 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4751;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0004;THETA=0.0011;AC=1041;AN=2184 GT:DS:GL:BD 0.47664836 0 1 32697698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5311;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0004;THETA=0.0009;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 32697709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7011;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32697759 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.6034;AVGPOST=0.9941;RSQ=0.9917;ERATE=0.0007;THETA=0.0006;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 32697803 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.5312;AVGPOST=0.9970;RSQ=0.9953;ERATE=0.0004;THETA=0.0009;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 32697817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32697948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5322;AVGPOST=0.9967;RSQ=0.9947;ERATE=0.0010;THETA=0.0008;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 32697955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32698023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32698104 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32698284 . A AAG 33504 PASS INDEL;BAVGPOST=0.927;BRSQ=0.875;LDAF=0.4380;AVGPOST=0.9365;RSQ=0.9103;ERATE=0.0013;THETA=0.0006;AC=974;AN=2184 GT:DS:GL:BD 0.44597068 0 1 32698349 rs5779817 A AG 16243 PASS INDEL;BAVGPOST=0.916;BRSQ=0.844;LDAF=0.4008;AVGPOST=0.9190;RSQ=0.8790;ERATE=0.0054;THETA=0.0039;AC=903;AN=2184 GT:DS:GL:BD 0.41346154 0 1 32698350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.999;LDAF=0.5322;AVGPOST=0.9958;RSQ=0.9934;ERATE=0.0005;THETA=0.0005;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 32698452 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7872;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32698457 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5969;AVGPOST=0.9960;RSQ=0.9940;ERATE=0.0005;THETA=0.0006;AC=1308;AN=2184 GT:DS:GL:BD 0.59890109 1 1 32698458 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5317;AVGPOST=0.9963;RSQ=0.9941;ERATE=0.0005;THETA=0.0006;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 32698490 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.764;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9088;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32698615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4447;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32698764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.972;LDAF=0.3223;AVGPOST=0.9883;RSQ=0.9798;ERATE=0.0006;THETA=0.0005;AC=703;AN=2184 GT:DS:GL:BD 0.32188645 0 1 32698814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0039;AVGPOST=0.9982;RSQ=0.8060;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32698969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8322;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32698984 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3375;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0015;AC=737;AN=2184 GT:DS:GL:BD 0.33745420 0 1 32699092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7755;ERATE=0.0003;THETA=0.0031;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32699154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6642;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32699220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3954;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0012;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 32699360 . TTTG T 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7068;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32699376 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32699389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.730;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7630;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32699419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7165;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32699482 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8370;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32699512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32699516 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32699527 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0154;AVGPOST=0.9981;RSQ=0.9525;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32699546 . TA T 185 PASS INDEL;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0043;AVGPOST=0.9936;RSQ=0.3610;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32699593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3383;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 32699748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3390;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0005;THETA=0.0002;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 32699854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7758;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32699941 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3383;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0007;THETA=0.0011;AC=738;AN=2184 GT:DS:GL:BD 0.33791208 0 1 32699954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.781;LDAF=0.0036;AVGPOST=0.9962;RSQ=0.6165;ERATE=0.0015;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32699990 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6913;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32700006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.970;LDAF=0.3212;AVGPOST=0.9809;RSQ=0.9742;ERATE=0.0006;THETA=0.0005;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 32700089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32700117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32700119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32700168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8653;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32700232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8722;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32700263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9981;RSQ=0.8619;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32700280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6086;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32700289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1631;AVGPOST=0.9966;RSQ=0.9915;ERATE=0.0005;THETA=0.0005;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 32700347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9229;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32700413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.843;LDAF=0.0295;AVGPOST=0.9921;RSQ=0.8986;ERATE=0.0012;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32700467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8200;ERATE=0.0013;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32700494 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7950;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32700501 . GT G 253 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7254;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32700509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9317;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32700651 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7891;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32700696 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4675;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32700756 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7061;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32700777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7897;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32700839 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8512;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32700861 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.8985;ERATE=0.0005;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32700900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6012;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32700956 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.7113;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32701074 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9654;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32701143 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0098;AVGPOST=0.9986;RSQ=0.9497;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32701164 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9310;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32701167 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6213;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32701224 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32701243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7399;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32701278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9781;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32701341 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32701358 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8730;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32701375 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8168;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32701486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3702;AVGPOST=0.9954;RSQ=0.9935;ERATE=0.0005;THETA=0.0004;AC=810;AN=2184 GT:DS:GL:BD 0.37087911 0 1 32701543 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.974;LDAF=0.7063;AVGPOST=0.9793;RSQ=0.9678;ERATE=0.0020;THETA=0.0005;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 32701620 . GTA G 22564 PASS INDEL;BAVGPOST=0.991;BRSQ=0.274;LDAF=0.9870;AVGPOST=0.9795;RSQ=0.3503;ERATE=0.0030;THETA=0.0008;AC=2169;AN=2184 GT:DS:GL:BD 0.99313188 1 1 32701710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.509;LDAF=0.0039;AVGPOST=0.9974;RSQ=0.7196;ERATE=0.0007;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32701712 . ATC A 564 PASS INDEL;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0171;AVGPOST=0.9966;RSQ=0.9275;ERATE=0.0005;THETA=0.0044;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32701742 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8616;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32701755 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9170;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32701885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0054;AVGPOST=0.9988;RSQ=0.9060;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32701921 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0027;AVGPOST=0.9968;RSQ=0.5115;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32702034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.593;LDAF=0.0068;AVGPOST=0.9941;RSQ=0.6285;ERATE=0.0006;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32702182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5027;ERATE=0.0009;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32702198 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32702238 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7343;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32702305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7559;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32702347 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3434;AVGPOST=0.9924;RSQ=0.9897;ERATE=0.0006;THETA=0.0004;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 32702348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9672;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32702352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9152;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32702372 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0312;AVGPOST=0.9971;RSQ=0.9681;ERATE=0.0003;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32702420 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32702473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0074;AVGPOST=0.9988;RSQ=0.9386;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32702478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3699;AVGPOST=0.9958;RSQ=0.9945;ERATE=0.0003;THETA=0.0025;AC=809;AN=2184 GT:DS:GL:BD 0.37042123 0 1 32702482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5099;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32702488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8333;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32702534 . AT A 623 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0065;AVGPOST=0.9988;RSQ=0.9149;ERATE=0.0006;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32702535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3806;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32702536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0005;THETA=0.0028;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32702653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0804;AVGPOST=0.9935;RSQ=0.9666;ERATE=0.0004;THETA=0.0005;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 32702654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4267;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32702813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0029;AVGPOST=0.9983;RSQ=0.7735;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32702826 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.642;LDAF=0.0279;AVGPOST=0.9789;RSQ=0.7208;ERATE=0.0006;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32702896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.8854;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32702916 rs66783820 AATAC A 8195 PASS INDEL;BAVGPOST=0.860;BRSQ=0.758;LDAF=0.6399;AVGPOST=0.8249;RSQ=0.7374;ERATE=0.0070;THETA=0.0009;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 32703077 rs61281412 TAC T 7551 PASS INDEL;BAVGPOST=0.863;BRSQ=0.764;LDAF=0.6630;AVGPOST=0.8818;RSQ=0.8162;ERATE=0.0026;THETA=0.0004;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 32703083 rs61281412 T TAG 204 PASS INDEL;BAVGPOST=0.982;BRSQ=0.397;LDAF=0.0836;AVGPOST=0.8653;RSQ=0.3117;ERATE=0.0116;THETA=0.0035;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32703103 rs72101754 ATATATATATT A 2362 PASS INDEL;BAVGPOST=0.927;BRSQ=0.719;LDAF=0.1593;AVGPOST=0.9394;RSQ=0.8406;ERATE=0.0011;THETA=0.0007;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 32703110 rs60793971 ATATATATT A 2873 PASS INDEL;BAVGPOST=0.912;BRSQ=0.686;LDAF=0.1786;AVGPOST=0.9199;RSQ=0.8076;ERATE=0.0020;THETA=0.0006;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 32703112 rs60793971 TATATATTA T 829 PASS INDEL;BAVGPOST=0.900;BRSQ=0.533;LDAF=0.1114;AVGPOST=0.9336;RSQ=0.7590;ERATE=0.0014;THETA=0.0006;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32703113 . ATATATT A 2807 PASS INDEL;BAVGPOST=0.900;BRSQ=0.653;LDAF=0.2022;AVGPOST=0.8380;RSQ=0.6132;ERATE=0.0115;THETA=0.0007;AC=352;AN=2184 GT:DS:GL:BD 0.16117217 0 1 32703114 . ATT A 2311 PASS INDEL;BAVGPOST=0.924;BRSQ=0.727;LDAF=0.1492;AVGPOST=0.9412;RSQ=0.8371;ERATE=0.0033;THETA=0.0046;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 32703118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7403;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32703165 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0027;AVGPOST=0.9967;RSQ=0.4381;ERATE=0.0009;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703197 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0051;AVGPOST=0.9962;RSQ=0.6854;ERATE=0.0011;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32703198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.973;LDAF=0.1291;AVGPOST=0.9916;RSQ=0.9732;ERATE=0.0007;THETA=0.0005;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 32703233 . ATCC A 9373 PASS INDEL;BAVGPOST=0.981;BRSQ=0.929;LDAF=0.1353;AVGPOST=0.9894;RSQ=0.9657;ERATE=0.0006;THETA=0.0010;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 32703264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.947;LDAF=0.6929;AVGPOST=0.9684;RSQ=0.9489;ERATE=0.0024;THETA=0.0007;AC=1517;AN=2184 GT:DS:GL:BD 0.69459707 1 1 32703486 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0096;AVGPOST=0.9955;RSQ=0.8125;ERATE=0.0005;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32703735 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8845;ERATE=0.0006;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32703744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7087;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8210;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703805 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8392;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32703861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8126;ERATE=0.0005;THETA=0.0019;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32703862 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7111;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703898 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8480;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32703908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5663;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6820;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32703959 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6294;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32703979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0055;AVGPOST=0.9939;RSQ=0.5892;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32704030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9440;ERATE=0.0003;THETA=0.0045;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32704089 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8272;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32704138 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.967;LDAF=0.0214;AVGPOST=0.9958;RSQ=0.9205;ERATE=0.0005;THETA=0.0013;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32704281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.781;LDAF=0.0040;AVGPOST=0.9978;RSQ=0.7594;ERATE=0.0004;THETA=0.0039;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32704328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32704379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9551;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32704382 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32704425 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9066;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32704429 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32704445 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32704840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0049;AVGPOST=0.9988;RSQ=0.8931;ERATE=0.0004;THETA=0.0023;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32704852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0096;AVGPOST=0.9965;RSQ=0.8698;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32704858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0048;AVGPOST=0.9988;RSQ=0.9084;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32704865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.918;LDAF=0.4183;AVGPOST=0.9420;RSQ=0.9146;ERATE=0.0157;THETA=0.0006;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 32704885 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.8046;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32705170 . G GA 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32705201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.915;LDAF=0.0269;AVGPOST=0.9954;RSQ=0.9349;ERATE=0.0002;THETA=0.0001;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32705257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5992;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32705260 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4312;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32705345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32705358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8190;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32705674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8321;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32705677 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0260;AVGPOST=0.9989;RSQ=0.9831;ERATE=0.0005;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32705698 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0192;AVGPOST=0.9998;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32705728 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0200;AVGPOST=0.9984;RSQ=0.9681;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32705782 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0114;AVGPOST=0.9968;RSQ=0.8867;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32705947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0260;AVGPOST=0.9981;RSQ=0.9716;ERATE=0.0005;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32705957 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32705958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3684;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32705987 . CCTGA C 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32706026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2580;AVGPOST=0.9971;RSQ=0.9936;ERATE=0.0008;THETA=0.0002;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 32706068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0036;AVGPOST=0.9994;RSQ=0.9387;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32706175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8768;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32706183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0727;AVGPOST=0.9989;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 32706184 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8955;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32706212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8713;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32706354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0094;AVGPOST=0.9932;RSQ=0.7331;ERATE=0.0011;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32706359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0035;AVGPOST=0.9971;RSQ=0.6917;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32706379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0033;AVGPOST=0.9973;RSQ=0.7043;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32706415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0136;AVGPOST=0.9949;RSQ=0.8335;ERATE=0.0009;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32706451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.836;LDAF=0.0153;AVGPOST=0.9948;RSQ=0.8536;ERATE=0.0005;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32706492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0037;AVGPOST=0.9943;RSQ=0.3402;ERATE=0.0016;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32706634 rs72090877 GTTTT G 42167 PASS INDEL;BAVGPOST=0.956;BRSQ=0.868;LDAF=0.7767;AVGPOST=0.9117;RSQ=0.7983;ERATE=0.0156;THETA=0.0004;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 32706854 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9963;RSQ=0.8218;ERATE=0.0005;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32706919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.677;LDAF=0.0138;AVGPOST=0.9883;RSQ=0.6925;ERATE=0.0005;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32706983 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7382;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32707081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8040;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32707187 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7176;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32707196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2577;AVGPOST=0.9965;RSQ=0.9922;ERATE=0.0008;THETA=0.0043;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 32707308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.3067;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32707379 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5372;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32707440 . A AAG 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32707458 . AC A 142 PASS INDEL;BAVGPOST=0.998;BRSQ=0.825;LDAF=0.0060;AVGPOST=0.9973;RSQ=0.8140;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32707552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0129;AVGPOST=0.9985;RSQ=0.9499;ERATE=0.0002;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32707595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2830;AVGPOST=0.9993;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 32707711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7899;ERATE=0.0002;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32707854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0073;AVGPOST=0.9979;RSQ=0.8994;ERATE=0.0004;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32707871 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32707893 . GA G 1502 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0145;AVGPOST=0.9984;RSQ=0.9563;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32707925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8256;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32707986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5963;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32707998 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8108;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32708019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8085;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32708096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8551;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32708126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9690;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32708135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4525;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32708240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32708296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0463;AVGPOST=0.9984;RSQ=0.9868;ERATE=0.0003;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 32708578 . T TGG 261 PASS INDEL;BAVGPOST=0.996;BRSQ=0.787;LDAF=0.0161;AVGPOST=0.9829;RSQ=0.5535;ERATE=0.0066;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32708610 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9486;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32708625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.802;LDAF=0.0109;AVGPOST=0.9950;RSQ=0.8220;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32708663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7306;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32708693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7979;AVGPOST=0.9952;RSQ=0.9894;ERATE=0.0003;THETA=0.0004;AC=1745;AN=2184 GT:DS:GL:BD 0.79899269 1 1 32708907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3761;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32708960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5977;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32709013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.790;LDAF=0.0052;AVGPOST=0.9982;RSQ=0.8449;ERATE=0.0004;THETA=0.0001;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32709035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8267;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32709057 rs34633529 T TA 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0056;AVGPOST=0.9946;RSQ=0.6452;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32709067 . TA T 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0030;AVGPOST=0.9961;RSQ=0.4080;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32709108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2695;AVGPOST=0.9972;RSQ=0.9943;ERATE=0.0004;THETA=0.0002;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 32709123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9989;RSQ=0.9677;ERATE=0.0004;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32709146 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0733;AVGPOST=0.9987;RSQ=0.9940;ERATE=0.0002;THETA=0.0003;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 32709383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.676;LDAF=0.0063;AVGPOST=0.9962;RSQ=0.7841;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32709589 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7985;AVGPOST=0.9973;RSQ=0.9927;ERATE=0.0005;THETA=0.0002;AC=1746;AN=2184 GT:DS:GL:BD 0.79945058 1 1 32709606 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2643;AVGPOST=0.9983;RSQ=0.9963;ERATE=0.0004;THETA=0.0002;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 32709860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7694;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32709963 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9079;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32710011 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0073;AVGPOST=0.9987;RSQ=0.9282;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32710045 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3991;AVGPOST=0.9971;RSQ=0.9953;ERATE=0.0005;THETA=0.0004;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 32710075 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.942;LDAF=0.0214;AVGPOST=0.9984;RSQ=0.9658;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32710317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8098;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32710355 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7947;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32710395 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32710552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0100;AVGPOST=0.9990;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32710588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8623;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32710722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32710908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.6587;AVGPOST=0.9837;RSQ=0.9730;ERATE=0.0008;THETA=0.0002;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 32711014 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32711084 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.967;LDAF=0.2966;AVGPOST=0.9758;RSQ=0.9630;ERATE=0.0034;THETA=0.0006;AC=648;AN=2184 GT:DS:GL:BD 0.29670331 0 1 32711095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32711287 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0172;AVGPOST=0.9994;RSQ=0.9847;ERATE=0.0003;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32711356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32711399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0094;AVGPOST=0.9985;RSQ=0.9378;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32711413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.878;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7180;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32711416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9983;RSQ=0.8305;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32711504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7832;ERATE=0.0009;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32711552 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.7059;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32711898 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6060;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0055;AVGPOST=0.9996;RSQ=0.9666;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32712205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9461;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32712218 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2042;AVGPOST=0.9973;RSQ=0.9935;ERATE=0.0005;THETA=0.0005;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 32712294 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712375 . G GTGGC 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712391 . A ACT 136 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712393 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32712444 . CA C 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32712779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1873;AVGPOST=0.9970;RSQ=0.9916;ERATE=0.0007;THETA=0.0006;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 32712807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0051;AVGPOST=0.9985;RSQ=0.8782;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32712844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0062;AVGPOST=0.9960;RSQ=0.7596;ERATE=0.0006;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32712846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0080;AVGPOST=0.9990;RSQ=0.9454;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32712974 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7238;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32713015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32713161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7188;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32713212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32713226 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8980;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32713235 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0105;AVGPOST=0.9991;RSQ=0.9622;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32713334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32713354 rs79651473 C CA 95 PASS INDEL;BAVGPOST=0.999;BRSQ=0.539;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5457;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32713371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32713386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9484;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32713387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32713401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9537;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32713459 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1905;AVGPOST=0.9988;RSQ=0.9969;ERATE=0.0003;THETA=0.0005;AC=415;AN=2184 GT:DS:GL:BD 0.19001831 0 1 32713513 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32713565 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32713567 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7917;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32713569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9449;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32713579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0174;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32713614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7983;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32713616 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9564;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32713675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7692;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32713757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7789;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32713767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32713771 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32713819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6130;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32713866 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2101;AVGPOST=0.9982;RSQ=0.9954;ERATE=0.0006;THETA=0.0009;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 32713939 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0059;AVGPOST=0.9987;RSQ=0.9078;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32713950 . G GA 208 PASS INDEL;BAVGPOST=0.972;BRSQ=0.618;LDAF=0.0613;AVGPOST=0.9303;RSQ=0.5042;ERATE=0.0256;THETA=0.0007;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32714024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32714158 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32714284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32714492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0080;AVGPOST=0.9994;RSQ=0.9649;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32714721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.1522;AVGPOST=0.9971;RSQ=0.9910;ERATE=0.0003;THETA=0.0010;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 32714762 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1425;AVGPOST=0.9954;RSQ=0.9856;ERATE=0.0004;THETA=0.0006;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 32714777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.6399;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32714818 . AAAAC A 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5762;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32714872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7937;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32714943 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32715111 . AT A 1117 PASS INDEL;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9367;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32715131 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8787;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32715274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8372;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32715451 . T TTTTG 160 PASS INDEL;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0007;AVGPOST=0.9988;RSQ=0.2780;ERATE=0.0004;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32715609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32715706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.967;LDAF=0.3556;AVGPOST=0.9858;RSQ=0.9685;ERATE=0.0435;THETA=0.0005;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 32715773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.811;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8373;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32715873 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.9972;AVGPOST=0.9988;RSQ=0.8354;ERATE=0.0005;THETA=0.0002;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 32715924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32716034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32716067 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5087;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32716249 . TAGAG T 5875 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32716266 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32716270 . TC T 330 PASS INDEL;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7809;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32716291 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4939;AVGPOST=0.9965;RSQ=0.9947;ERATE=0.0009;THETA=0.0040;AC=1081;AN=2184 GT:DS:GL:BD 0.49496338 0 1 32716331 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0002;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32716457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4945;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0006;THETA=0.0002;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 32716469 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8986;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32716495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32716564 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9996;RSQ=0.9600;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32716599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0097;AVGPOST=0.9981;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32716670 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8461;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32716699 . CCA C 123 PASS INDEL;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7176;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32716752 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32716837 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9996;RSQ=0.9901;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32716859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9422;ERATE=0.0002;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32716894 . G GC 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32716897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3797;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 32717020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8757;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32717111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.8978;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32717119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9384;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32717212 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32717216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6722;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32717221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32717267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5074;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32717361 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32717392 . A AAT 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5217;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32717400 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.7894;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32717413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4728;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32717482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7478;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32717510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4649;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32717512 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8413;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32717614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7874;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32717653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9059;AVGPOST=0.9973;RSQ=0.9885;ERATE=0.0005;THETA=0.0002;AC=1980;AN=2184 GT:DS:GL:BD 0.90659338 1 1 32717670 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0481;AVGPOST=0.9959;RSQ=0.9631;ERATE=0.0005;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32717720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3804;AVGPOST=0.9940;RSQ=0.9911;ERATE=0.0010;THETA=0.0003;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 32717774 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9200;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32717982 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5000;AVGPOST=0.9979;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=1093;AN=2184 GT:DS:GL:BD 0.50045788 1 1 32717996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0243;AVGPOST=0.9996;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32718013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32718100 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3601;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=786;AN=2184 GT:DS:GL:BD 0.35989010 0 1 32718165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5078;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0005;THETA=0.0003;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 32718265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9298;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32718338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.764;LDAF=0.0065;AVGPOST=0.9957;RSQ=0.7151;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32718340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0081;AVGPOST=0.9987;RSQ=0.9259;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32718374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.723;LDAF=0.0055;AVGPOST=0.9964;RSQ=0.7735;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32718431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3784;AVGPOST=0.9927;RSQ=0.9883;ERATE=0.0007;THETA=0.0003;AC=828;AN=2184 GT:DS:GL:BD 0.37912089 0 1 32718494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6308;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32718501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0132;AVGPOST=0.9992;RSQ=0.9733;ERATE=0.0003;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32718546 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.3643;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32718602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4823;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32718613 . T TAAAA 109521 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8879;AVGPOST=0.9953;RSQ=0.9815;ERATE=0.0006;THETA=0.0005;AC=1943;AN=2184 GT:DS:GL:BD 0.88965201 1 1 32718629 rs71132661 TATACAC T 51528 PASS INDEL;BAVGPOST=0.975;BRSQ=0.962;LDAF=0.5079;AVGPOST=0.9808;RSQ=0.9725;ERATE=0.0035;THETA=0.0003;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 32718669 . TACATATATATAC T 712 PASS INDEL;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0072;AVGPOST=0.9904;RSQ=0.5173;ERATE=0.0008;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32718709 rs10570351 CAT C 31413 PASS INDEL;BAVGPOST=0.954;BRSQ=0.933;LDAF=0.4744;AVGPOST=0.9491;RSQ=0.9318;ERATE=0.0066;THETA=0.0005;AC=1046;AN=2184 GT:DS:GL:BD 0.47893772 0 1 32718739 rs71917656 A AGGC 6224 PASS INDEL;BAVGPOST=0.873;BRSQ=0.779;LDAF=0.3677;AVGPOST=0.8619;RSQ=0.7987;ERATE=0.0132;THETA=0.0004;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 32718756 rs67594968 T TAG 20942 PASS INDEL;BAVGPOST=0.941;BRSQ=0.901;LDAF=0.4505;AVGPOST=0.9306;RSQ=0.8979;ERATE=0.0157;THETA=0.0004;AC=999;AN=2184 GT:DS:GL:BD 0.45741758 0 1 32718758 . CAGAAAAAAA C 1924 PASS INDEL;BAVGPOST=0.995;BRSQ=0.832;LDAF=0.0173;AVGPOST=0.9956;RSQ=0.9118;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32718768 . A AG 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6079;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32718786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5074;AVGPOST=0.9985;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 32718851 . GGT G 49 PASS INDEL;BAVGPOST=0.993;BRSQ=0.655;LDAF=0.0165;AVGPOST=0.9801;RSQ=0.5308;ERATE=0.0051;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32718876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5084;AVGPOST=0.9979;RSQ=0.9972;ERATE=0.0005;THETA=0.0002;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 32718964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0181;AVGPOST=0.9983;RSQ=0.9619;ERATE=0.0019;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32718983 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6176;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32719070 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32719118 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9478;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32719174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32719297 . C CTGAT 351 PASS INDEL;BAVGPOST=0.999;BRSQ=0.647;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7924;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32719328 rs11421699 C CT 33363 PASS INDEL;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.5056;AVGPOST=0.9908;RSQ=0.9870;ERATE=0.0008;THETA=0.0006;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 32719474 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.3849;AVGPOST=0.9962;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 32719477 . G GT 6596 PASS INDEL;BAVGPOST=0.844;BRSQ=0.643;LDAF=0.2878;AVGPOST=0.8464;RSQ=0.6959;ERATE=0.0410;THETA=0.0003;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 32719498 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32719528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5875;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32719598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6901;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32719635 . A AT 68 PASS INDEL;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5309;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32719739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9994;RSQ=0.9429;ERATE=0.0002;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32719761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7555;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32719767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32719869 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9178;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32719944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32720002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4975;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0006;THETA=0.0006;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 32720053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5077;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0004;THETA=0.0004;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 32720203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32720219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32720285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9067;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=1981;AN=2184 GT:DS:GL:BD 0.90705127 1 1 32720314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9396;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32720350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9992;RSQ=0.9311;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32720405 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7331;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32720428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0798;AVGPOST=0.9991;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 32720734 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0797;AVGPOST=0.9978;RSQ=0.9904;ERATE=0.0003;THETA=0.0002;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 32720832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0075;AVGPOST=0.9971;RSQ=0.8548;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32720901 . CT C 172 PASS INDEL;BAVGPOST=0.998;BRSQ=0.549;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3852;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0622;AVGPOST=0.9996;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32721048 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32721102 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32721163 . T TTTTG 874 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9403;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32721196 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0003;AVGPOST=0.9997;RSQ=0.6564;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721216 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0324;AVGPOST=0.9966;RSQ=0.9585;ERATE=0.0007;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 32721398 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0086;AVGPOST=0.9994;RSQ=0.9720;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32721451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0453;AVGPOST=0.9967;RSQ=0.9697;ERATE=0.0003;THETA=0.0002;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32721503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721533 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8173;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32721670 . TC T 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0044;AVGPOST=0.9982;RSQ=0.8346;ERATE=0.0003;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32721886 . T TA 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3720;ERATE=0.0006;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32721985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1170;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0007;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 32722001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8282;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32722004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9212;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32722173 . A AT 12191 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0623;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32722204 rs10580194 CAG C 32851 PASS INDEL;BAVGPOST=0.989;BRSQ=0.981;LDAF=0.1999;AVGPOST=0.9908;RSQ=0.9805;ERATE=0.0007;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 32722238 . GAA G 85 PASS INDEL;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.7038;ERATE=0.0017;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32722243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32722253 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0621;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32722281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0623;AVGPOST=0.9996;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32722407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0146;AVGPOST=0.9943;RSQ=0.8487;ERATE=0.0006;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32722582 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7168;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32722704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.1949;AVGPOST=0.9974;RSQ=0.9939;ERATE=0.0005;THETA=0.0002;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 32722772 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32722809 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9984;RSQ=0.2515;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32722864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8011;ERATE=0.0008;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32722872 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9888;ERATE=0.0003;THETA=0.0001;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32722873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6468;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32722886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9340;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32722892 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0098;AVGPOST=0.9990;RSQ=0.9587;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32722947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32723039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7384;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32723158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0745;AVGPOST=0.9965;RSQ=0.9832;ERATE=0.0004;THETA=0.0002;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 32723248 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32723311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32723312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3967;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32723461 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9989;RSQ=0.9769;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32723513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.980;LDAF=0.4871;AVGPOST=0.9906;RSQ=0.9883;ERATE=0.0007;THETA=0.0002;AC=1066;AN=2184 GT:DS:GL:BD 0.48809522 0 1 32723527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.953;LDAF=0.1543;AVGPOST=0.9938;RSQ=0.9838;ERATE=0.0004;THETA=0.0004;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 32723528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7698;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32723707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7550;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32723763 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1203;AVGPOST=0.9952;RSQ=0.9802;ERATE=0.0012;THETA=0.0002;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 32723901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.973;LDAF=0.4631;AVGPOST=0.9659;RSQ=0.9516;ERATE=0.0048;THETA=0.0004;AC=1015;AN=2184 GT:DS:GL:BD 0.46474358 0 1 32723903 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32723981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1726;AVGPOST=0.9981;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 32723992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9146;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32724012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32724270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32724327 rs5780056 GT G 9749 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1189;AVGPOST=0.9960;RSQ=0.9855;ERATE=0.0004;THETA=0.0003;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 32724416 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6594;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32724422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32724468 rs79046203 CT C 14972 PASS INDEL;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1603;AVGPOST=0.9955;RSQ=0.9887;ERATE=0.0007;THETA=0.0004;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 32724494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32724502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9058;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32724713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1586;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0005;THETA=0.0001;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 32724756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0619;AVGPOST=0.9981;RSQ=0.9897;ERATE=0.0003;THETA=0.0002;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32724815 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7794;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32724985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1727;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 32725060 . AATAC A 96 PASS INDEL;BAVGPOST=0.997;BRSQ=0.813;LDAF=0.0066;AVGPOST=0.9944;RSQ=0.6509;ERATE=0.0022;THETA=0.0027;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32725070 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4507;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32725088 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9025;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32725182 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0148;AVGPOST=0.9987;RSQ=0.9635;ERATE=0.0004;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32725217 rs11455457 C CT 9528 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0616;AVGPOST=0.9990;RSQ=0.9929;ERATE=0.0006;THETA=0.0015;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32725239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6801;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32725324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0073;AVGPOST=0.9968;RSQ=0.8057;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32725334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5418;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32725402 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32725556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0100;AVGPOST=0.9984;RSQ=0.9327;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32725736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2646;AVGPOST=0.9973;RSQ=0.9950;ERATE=0.0005;THETA=0.0008;AC=576;AN=2184 GT:DS:GL:BD 0.26373628 0 1 32725846 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32725898 rs60573451 CT C 29318 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2797;AVGPOST=0.9983;RSQ=0.9964;ERATE=0.0004;THETA=0.0008;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 32725947 . TA T 972 PASS INDEL;BAVGPOST=0.891;BRSQ=0.729;LDAF=0.2017;AVGPOST=0.9228;RSQ=0.8428;ERATE=0.0025;THETA=0.0003;AC=449;AN=2184 GT:DS:GL:BD 0.20558608 0 1 32725951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4357;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=951;AN=2184 GT:DS:GL:BD 0.43543956 0 1 32726017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4190;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0007;THETA=0.0010;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 32726030 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0154;AVGPOST=0.9992;RSQ=0.9801;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32726045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0091;AVGPOST=0.9984;RSQ=0.9337;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32726085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32726092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1322;AVGPOST=0.9984;RSQ=0.9947;ERATE=0.0004;THETA=0.0003;AC=289;AN=2184 GT:DS:GL:BD 0.13232601 0 1 32726167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0088;AVGPOST=0.9979;RSQ=0.8966;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32726169 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.908;LDAF=0.0122;AVGPOST=0.9960;RSQ=0.8628;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32726180 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0142;AVGPOST=0.9973;RSQ=0.9208;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32726226 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0068;AVGPOST=0.9952;RSQ=0.7238;ERATE=0.0010;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32726254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0065;AVGPOST=0.9992;RSQ=0.9465;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32726284 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0137;AVGPOST=0.9981;RSQ=0.9377;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32726327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0175;AVGPOST=0.9993;RSQ=0.9819;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32726363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32726732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0036;AVGPOST=0.9978;RSQ=0.7714;ERATE=0.0006;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32726754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0045;AVGPOST=0.9970;RSQ=0.7584;ERATE=0.0015;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32726790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0015;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32726797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6680;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32726903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7559;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32726919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1337;AVGPOST=0.9988;RSQ=0.9967;ERATE=0.0004;THETA=0.0012;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 32726928 . T TA 35499 PASS INDEL;BAVGPOST=0.987;BRSQ=0.975;LDAF=0.2674;AVGPOST=0.9888;RSQ=0.9802;ERATE=0.0007;THETA=0.0003;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 32727017 . A AC 6944 PASS INDEL;BAVGPOST=0.969;BRSQ=0.927;LDAF=0.2544;AVGPOST=0.9734;RSQ=0.9491;ERATE=0.0012;THETA=0.0051;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 32727021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0578;AVGPOST=0.9985;RSQ=0.9926;ERATE=0.0003;THETA=0.0063;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32727026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9744;ERATE=0.0003;THETA=0.0016;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32727062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8901;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32727105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.8371;AVGPOST=0.9925;RSQ=0.9788;ERATE=0.0008;THETA=0.0089;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 32727123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7917;ERATE=0.0003;THETA=0.0160;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32727126 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0147;AVGPOST=0.9982;RSQ=0.9512;ERATE=0.0003;THETA=0.0089;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32727145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9373;ERATE=0.0003;THETA=0.0082;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32727352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.0824;AVGPOST=0.9942;RSQ=0.9731;ERATE=0.0005;THETA=0.0079;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 32727456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9608;ERATE=0.0003;THETA=0.0189;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32727655 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.921;LDAF=0.2949;AVGPOST=0.9567;RSQ=0.9222;ERATE=0.0022;THETA=0.0132;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 32727708 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5066;ERATE=0.0004;THETA=0.0093;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32727735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.924;LDAF=0.2292;AVGPOST=0.9637;RSQ=0.9291;ERATE=0.0038;THETA=0.0196;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 32727740 . C CT 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5135;ERATE=0.0005;THETA=0.0239;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32727948 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0271;AVGPOST=0.9973;RSQ=0.9654;ERATE=0.0004;THETA=0.0150;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32727965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.7399;ERATE=0.0008;THETA=0.0240;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32728016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9836;ERATE=0.0005;THETA=0.0069;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32728148 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7446;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32728210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0087;AVGPOST=0.9993;RSQ=0.9694;ERATE=0.0004;THETA=0.0162;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32728336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.971;LDAF=0.5233;AVGPOST=0.9798;RSQ=0.9744;ERATE=0.0024;THETA=0.0088;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 32728337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.814;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7976;ERATE=0.0003;THETA=0.0096;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32728343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.838;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8883;ERATE=0.0004;THETA=0.0075;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32728421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.984;LDAF=0.6642;AVGPOST=0.9889;RSQ=0.9816;ERATE=0.0013;THETA=0.0019;AC=1451;AN=2184 GT:DS:GL:BD 0.66437727 1 1 32728555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32728735 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6161;ERATE=0.0004;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32728913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.6476;AVGPOST=0.9919;RSQ=0.9878;ERATE=0.0005;THETA=0.0004;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 32728976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0818;AVGPOST=0.9985;RSQ=0.9935;ERATE=0.0003;THETA=0.0008;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 32729003 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7735;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32729018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32729062 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.5080;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32729207 . CCTT C 8866 PASS INDEL;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0597;AVGPOST=0.9975;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 32729320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0555;AVGPOST=0.9969;RSQ=0.9774;ERATE=0.0005;THETA=0.0008;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 32729431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.654;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.8162;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32729529 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.900;LDAF=0.1038;AVGPOST=0.9829;RSQ=0.9296;ERATE=0.0005;THETA=0.0004;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 32729575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32729637 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0242;AVGPOST=0.9986;RSQ=0.9807;ERATE=0.0003;THETA=0.0031;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32729719 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8380;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32729771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32730148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32730237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9488;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32730388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32730390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32730438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32730456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32730540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.989;LDAF=0.5947;AVGPOST=0.9943;RSQ=0.9923;ERATE=0.0004;THETA=0.0009;AC=1299;AN=2184 GT:DS:GL:BD 0.59478021 1 1 32730541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7814;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32730595 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6493;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32730601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32730696 . CAAA C 354 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6633;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32730760 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6423;AVGPOST=0.9928;RSQ=0.9892;ERATE=0.0012;THETA=0.0004;AC=1403;AN=2184 GT:DS:GL:BD 0.64239925 1 1 32730806 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2866;AVGPOST=0.9957;RSQ=0.9941;ERATE=0.0004;THETA=0.0004;AC=627;AN=2184 GT:DS:GL:BD 0.28708792 0 1 32730849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8511;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32731166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5831;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32731167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0894;AVGPOST=0.9988;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 32731174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6837;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32731280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6771;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32731317 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8425;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32731329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8120;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32731384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8139;ERATE=0.0009;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32731425 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5469;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32731437 . CAGG C 7254 PASS INDEL;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0447;AVGPOST=0.9971;RSQ=0.9754;ERATE=0.0004;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32731461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32731480 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8383;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32731483 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3202;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 32731708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32731915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32731948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32731955 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3209;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0004;THETA=0.0005;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 32732002 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6667;AVGPOST=0.9974;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=1456;AN=2184 GT:DS:GL:BD 0.66666669 1 1 32732004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32732021 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9150;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32732086 . CAG C 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6966;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32732270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0004;AVGPOST=0.9996;RSQ=0.6330;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32732289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8854;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32732357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6753;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0006;AC=1475;AN=2184 GT:DS:GL:BD 0.67536628 1 1 32732363 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32732469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32732478 . TCACGTATTC T 459 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32732515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6489;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32732518 . CT C 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5309;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32732587 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3205;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0005;THETA=0.0002;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 32732790 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9806;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32732807 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8003;ERATE=0.0008;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32732895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9271;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32732924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8285;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32732925 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32733037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0143;AVGPOST=0.9985;RSQ=0.9528;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32733169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32733248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0042;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32733302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32733326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32733343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0061;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32733389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9208;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32733472 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32733506 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8721;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32733553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0900;AVGPOST=0.9988;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 32733560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7148;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32733769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5733;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32733826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32733879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32733974 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6541;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32734199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0045;AVGPOST=0.9997;RSQ=0.9708;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32734333 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32734388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9993;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32734491 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9076;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32734492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32734621 . AC A 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4251;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32734809 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2778;AVGPOST=0.9976;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 32734877 rs71142593 AT A 8746 PASS INDEL;BAVGPOST=0.926;BRSQ=0.863;LDAF=0.3283;AVGPOST=0.8921;RSQ=0.8163;ERATE=0.0165;THETA=0.0005;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 32735215 . T TAC 5469 PASS INDEL;BAVGPOST=0.871;BRSQ=0.644;LDAF=0.2171;AVGPOST=0.8426;RSQ=0.6392;ERATE=0.0359;THETA=0.0006;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 32735226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.874;BRSQ=0.683;LDAF=0.3459;AVGPOST=0.8229;RSQ=0.6268;ERATE=0.0770;THETA=0.0015;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 32735228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9995;RSQ=0.9905;ERATE=0.0004;THETA=0.0006;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32735308 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32735443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32735468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.9952;AVGPOST=0.9987;RSQ=0.9019;ERATE=0.0003;THETA=0.0007;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 32735532 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7697;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32735633 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6579;AVGPOST=0.9922;RSQ=0.9903;ERATE=0.0021;THETA=0.0030;AC=1437;AN=2184 GT:DS:GL:BD 0.65796703 1 1 32735745 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9998;RSQ=0.9901;ERATE=0.0003;THETA=0.0014;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32735754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6565;AVGPOST=0.9973;RSQ=0.9964;ERATE=0.0006;THETA=0.0006;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 32735829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.8234;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32735863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6559;AVGPOST=0.9985;RSQ=0.9980;ERATE=0.0003;THETA=0.0109;AC=1432;AN=2184 GT:DS:GL:BD 0.65567768 1 1 32735864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.0946;AVGPOST=0.9980;RSQ=0.9918;ERATE=0.0004;THETA=0.0007;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 32735953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8673;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32736095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.8020;ERATE=0.0004;THETA=0.0074;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32736215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8717;AVGPOST=0.9978;RSQ=0.9919;ERATE=0.0005;THETA=0.0003;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 32736226 . CCAGTTCT C 89 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6551;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32736318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6620;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0004;AC=1446;AN=2184 GT:DS:GL:BD 0.66208792 1 1 32736382 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7336;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32736395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6554;AVGPOST=0.9990;RSQ=0.9986;ERATE=0.0003;THETA=0.0016;AC=1431;AN=2184 GT:DS:GL:BD 0.65521979 1 1 32736464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7955;ERATE=0.0004;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32736570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1508;AVGPOST=0.9973;RSQ=0.9936;ERATE=0.0005;THETA=0.0007;AC=330;AN=2184 GT:DS:GL:BD 0.15109891 0 1 32736583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9124;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32736587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0186;AVGPOST=0.9993;RSQ=0.9809;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32736600 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5767;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32736654 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8772;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32736887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8618;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32736894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9733;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32736980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8622;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32737010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32737050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1515;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0003;THETA=0.0016;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 32737073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8300;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32737176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0145;AVGPOST=0.9990;RSQ=0.9672;ERATE=0.0005;THETA=0.0066;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32737221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0263;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0030;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32737475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5106;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32737485 . T TG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32737630 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0135;AVGPOST=0.9993;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32737732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8907;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32737747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5746;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32737775 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0138;AVGPOST=0.9991;RSQ=0.9736;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32737779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.627;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4704;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32738115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8024;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32738139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.825;LDAF=0.0085;AVGPOST=0.9981;RSQ=0.9220;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32738178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0139;AVGPOST=0.9990;RSQ=0.9699;ERATE=0.0004;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32738199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32738266 . AAT A 233 PASS INDEL;BAVGPOST=0.970;BRSQ=0.742;LDAF=0.0605;AVGPOST=0.9769;RSQ=0.8723;ERATE=0.0006;THETA=0.0027;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 32738298 . ATAT A 8344 PASS INDEL;BAVGPOST=0.972;BRSQ=0.898;LDAF=0.1383;AVGPOST=0.9535;RSQ=0.8779;ERATE=0.0073;THETA=0.0037;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 32738299 . T TA 576 PASS INDEL;BAVGPOST=0.982;BRSQ=0.680;LDAF=0.0334;AVGPOST=0.9814;RSQ=0.8048;ERATE=0.0016;THETA=0.0003;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32738300 . T TAA 981 PASS INDEL;BAVGPOST=0.979;BRSQ=0.689;LDAF=0.0483;AVGPOST=0.9594;RSQ=0.6785;ERATE=0.0052;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32738302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7856;ERATE=0.0004;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32738397 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6274;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32738538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9086;ERATE=0.0004;THETA=0.0064;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32738611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0154;AVGPOST=0.9982;RSQ=0.9531;ERATE=0.0005;THETA=0.0024;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32738643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0047;AVGPOST=0.9977;RSQ=0.8223;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32738714 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32738815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0389;AVGPOST=0.9991;RSQ=0.9907;ERATE=0.0004;THETA=0.0008;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 32739069 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3544;AVGPOST=0.9947;RSQ=0.9931;ERATE=0.0003;THETA=0.0012;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 32739187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32739205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.5776;ERATE=0.0013;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32739270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5692;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32739416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7185;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32739434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0104;AVGPOST=0.9989;RSQ=0.9541;ERATE=0.0005;THETA=0.0034;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32739441 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.411;LDAF=0.0094;AVGPOST=0.9878;RSQ=0.4615;ERATE=0.0021;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32739503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8836;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32739514 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32739713 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32739729 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.508;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5081;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32739802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4802;ERATE=0.0005;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32739823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32739873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.984;LDAF=0.3590;AVGPOST=0.9756;RSQ=0.9665;ERATE=0.0016;THETA=0.0011;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 32740002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2208;AVGPOST=0.9919;RSQ=0.9854;ERATE=0.0005;THETA=0.0019;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 32740032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.801;LDAF=0.0094;AVGPOST=0.9956;RSQ=0.8315;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32740115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.8585;AVGPOST=0.9693;RSQ=0.9082;ERATE=0.0055;THETA=0.0015;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 32740194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5260;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32740473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4524;AVGPOST=0.9745;RSQ=0.9677;ERATE=0.0042;THETA=0.0008;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 32740484 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9235;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32740655 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0155;AVGPOST=0.9980;RSQ=0.9546;ERATE=0.0004;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32740678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6205;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0003;THETA=0.0036;AC=1356;AN=2184 GT:DS:GL:BD 0.62087911 1 1 32740688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8687;AVGPOST=0.9973;RSQ=0.9906;ERATE=0.0005;THETA=0.0005;AC=1899;AN=2184 GT:DS:GL:BD 0.86950547 1 1 32740734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.8190;AVGPOST=0.9965;RSQ=0.9912;ERATE=0.0005;THETA=0.0006;AC=1790;AN=2184 GT:DS:GL:BD 0.81959707 1 1 32740746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9960;RSQ=0.7272;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32740820 . GT G 1499 PASS INDEL;BAVGPOST=0.993;BRSQ=0.932;LDAF=0.0581;AVGPOST=0.9942;RSQ=0.9560;ERATE=0.0009;THETA=0.0006;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 32740859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.654;LDAF=0.0141;AVGPOST=0.9880;RSQ=0.6653;ERATE=0.0008;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32740993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5462;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32741144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32741400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32741469 . CCATGGGGAGAAG C 2594 PASS INDEL;BAVGPOST=0.995;BRSQ=0.757;LDAF=0.0104;AVGPOST=0.9953;RSQ=0.8070;ERATE=0.0004;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32741599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32741771 rs34436525 CAG C 72972 PASS INDEL;BAVGPOST=0.990;BRSQ=0.988;LDAF=0.6187;AVGPOST=0.9955;RSQ=0.9943;ERATE=0.0004;THETA=0.0004;AC=1351;AN=2184 GT:DS:GL:BD 0.61858976 1 1 32741891 . GAT G 19956 PASS INDEL;BAVGPOST=0.953;BRSQ=0.927;LDAF=0.5713;AVGPOST=0.9379;RSQ=0.9234;ERATE=0.0156;THETA=0.0006;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 32741895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0668;AVGPOST=0.9988;RSQ=0.9917;ERATE=0.0003;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 32742078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9583;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32742203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8044;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32742214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.676;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6561;ERATE=0.0015;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32742237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5861;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32742280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9287;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32742708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0336;AVGPOST=0.9992;RSQ=0.9898;ERATE=0.0003;THETA=0.0015;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32742709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.8179;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0005;THETA=0.0004;AC=1787;AN=2184 GT:DS:GL:BD 0.81822342 1 1 32742795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9118;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32742862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5957;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32742863 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32742922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5954;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32742988 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6883;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32743022 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9551;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32743207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7604;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32743210 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32743211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32743220 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32743292 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32743305 . T TC 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32743364 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0540;AVGPOST=0.9996;RSQ=0.9969;ERATE=0.0003;THETA=0.0006;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32743448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9681;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32743524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9386;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32743565 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5254;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32743595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7305;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32743656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0423;AVGPOST=0.9976;RSQ=0.9800;ERATE=0.0003;THETA=0.0006;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 32743668 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32743681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32743706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32743745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1338;AVGPOST=0.9982;RSQ=0.9945;ERATE=0.0003;THETA=0.0012;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32743785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0343;AVGPOST=0.9977;RSQ=0.9744;ERATE=0.0004;THETA=0.0009;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32743789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32743799 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32744132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0043;AVGPOST=0.9990;RSQ=0.9015;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32744143 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5911;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32744219 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32744303 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32744353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0266;AVGPOST=0.9976;RSQ=0.9688;ERATE=0.0003;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32744366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0253;AVGPOST=0.9947;RSQ=0.9175;ERATE=0.0003;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32744528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0070;AVGPOST=0.9993;RSQ=0.9683;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32744548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.9100;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32744791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9587;ERATE=0.0003;THETA=0.0065;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32744952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32744961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4859;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32744964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.8091;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32744972 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5175;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32745005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0115;AVGPOST=0.9966;RSQ=0.8931;ERATE=0.0006;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32745026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9545;ERATE=0.0003;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32745080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6163;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32745097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7208;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32745155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1946;AVGPOST=0.9914;RSQ=0.9801;ERATE=0.0004;THETA=0.0006;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 32745231 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32745261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7880;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32745276 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9523;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32745295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8107;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=1770;AN=2184 GT:DS:GL:BD 0.81043959 1 1 32745320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32745446 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0521;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32745472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32745486 . CAA C 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32745532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0014;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32745649 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0775;AVGPOST=0.9971;RSQ=0.9830;ERATE=0.0006;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32745782 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.7391;AVGPOST=0.9856;RSQ=0.9703;ERATE=0.0010;THETA=0.0006;AC=1618;AN=2184 GT:DS:GL:BD 0.74084246 1 1 32745825 rs112664086 CAAAA C 5662 PASS INDEL;BAVGPOST=0.994;BRSQ=0.964;LDAF=0.0783;AVGPOST=0.9971;RSQ=0.9828;ERATE=0.0012;THETA=0.0007;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 32745901 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.9042;AVGPOST=0.9800;RSQ=0.9225;ERATE=0.0033;THETA=0.0003;AC=1986;AN=2184 GT:DS:GL:BD 0.90934068 1 1 32745949 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0769;AVGPOST=0.9984;RSQ=0.9900;ERATE=0.0006;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32746008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0770;AVGPOST=0.9984;RSQ=0.9898;ERATE=0.0005;THETA=0.0002;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32746052 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0028;AVGPOST=0.9962;RSQ=0.4032;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32746061 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32746258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5392;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32746383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32746394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.964;LDAF=0.0762;AVGPOST=0.9981;RSQ=0.9892;ERATE=0.0003;THETA=0.0003;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32746396 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0833;AVGPOST=0.9991;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32746413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7735;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32746496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32746635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32746638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9156;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32746827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0095;AVGPOST=0.9992;RSQ=0.9673;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32746865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32746960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32746984 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2287;AVGPOST=0.9934;RSQ=0.9869;ERATE=0.0005;THETA=0.0005;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 32747174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.5600;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32747179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32747361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32747437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9605;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32747440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1172;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0004;THETA=0.0005;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 32747579 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.809;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8887;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32747595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0837;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32747647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0838;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32747677 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0838;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0009;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32747707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8408;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32747815 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9275;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32747948 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0206;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32747964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0838;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32747993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0338;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32748048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0571;AVGPOST=0.9975;RSQ=0.9826;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 32748309 . GATAA G 323 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7992;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32748433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8749;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32748439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0078;AVGPOST=0.9983;RSQ=0.9058;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32748541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0291;AVGPOST=0.9994;RSQ=0.9897;ERATE=0.0004;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32748561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.7941;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32748568 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0176;AVGPOST=0.9979;RSQ=0.9561;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32748630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7062;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32748634 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6301;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32748636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0837;AVGPOST=0.9994;RSQ=0.9963;ERATE=0.0004;THETA=0.0009;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32748656 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32748671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32748742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0290;AVGPOST=0.9994;RSQ=0.9895;ERATE=0.0003;THETA=0.0023;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32748756 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7766;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32748831 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0109;AVGPOST=0.9993;RSQ=0.9708;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32748842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6731;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32748907 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.3172;AVGPOST=0.9869;RSQ=0.9777;ERATE=0.0030;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 32749142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9169;AVGPOST=0.9984;RSQ=0.9928;ERATE=0.0003;THETA=0.0005;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 32749197 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0827;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 32749248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9022;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32749308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0291;AVGPOST=0.9984;RSQ=0.9747;ERATE=0.0005;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32749312 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32749539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.8022;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32749593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8361;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32749851 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8140;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32749861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6171;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32749869 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0097;AVGPOST=0.9959;RSQ=0.8499;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32749955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.9171;AVGPOST=0.9965;RSQ=0.9826;ERATE=0.0007;THETA=0.0004;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 32749992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0053;AVGPOST=0.9943;RSQ=0.5661;ERATE=0.0019;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32750029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.957;LDAF=0.3077;AVGPOST=0.9868;RSQ=0.9768;ERATE=0.0015;THETA=0.0005;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 32750045 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2309;AVGPOST=0.9958;RSQ=0.9919;ERATE=0.0004;THETA=0.0003;AC=503;AN=2184 GT:DS:GL:BD 0.23031135 0 1 32750185 . T TA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5026;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32750192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32750200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0829;AVGPOST=0.9969;RSQ=0.9844;ERATE=0.0005;THETA=0.0007;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 32750321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8907;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32750388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0854;AVGPOST=0.9917;RSQ=0.9599;ERATE=0.0007;THETA=0.0006;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32750483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.488;LDAF=0.0032;AVGPOST=0.9951;RSQ=0.4048;ERATE=0.0012;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32750544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6346;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32750551 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.955;LDAF=0.3262;AVGPOST=0.9675;RSQ=0.9419;ERATE=0.0019;THETA=0.0008;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 32750672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.956;LDAF=0.0314;AVGPOST=0.9959;RSQ=0.9420;ERATE=0.0006;THETA=0.0010;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32750720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5584;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32750746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9291;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32750840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1615;AVGPOST=0.9973;RSQ=0.9928;ERATE=0.0007;THETA=0.0004;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 32750841 . C CA 287 PASS INDEL;BAVGPOST=0.952;BRSQ=0.564;LDAF=0.0594;AVGPOST=0.9451;RSQ=0.6417;ERATE=0.0040;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32750877 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8258;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32750961 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1379;AVGPOST=0.9963;RSQ=0.9888;ERATE=0.0004;THETA=0.0009;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 32750994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32751020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1333;AVGPOST=0.9952;RSQ=0.9843;ERATE=0.0005;THETA=0.0116;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 32751088 . AAGT A 2655 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0202;AVGPOST=0.9963;RSQ=0.9392;ERATE=0.0003;THETA=0.0011;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32751267 . GT G 2161 PASS INDEL;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0199;AVGPOST=0.9968;RSQ=0.9417;ERATE=0.0003;THETA=0.0073;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32751269 . AGATTTTT A 5289 PASS INDEL;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0196;AVGPOST=0.9974;RSQ=0.9516;ERATE=0.0003;THETA=0.0017;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32751271 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0020;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32751476 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32751555 . C CTT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32751673 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0065;AVGPOST=0.9990;RSQ=0.9348;ERATE=0.0003;THETA=0.0045;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32751775 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0003;THETA=0.0018;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32751851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1561;AVGPOST=0.9940;RSQ=0.9854;ERATE=0.0004;THETA=0.0094;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 32752220 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0209;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32752296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0084;AVGPOST=0.9993;RSQ=0.9602;ERATE=0.0003;THETA=0.0044;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32752366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9376;ERATE=0.0003;THETA=0.0319;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32752400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0209;AVGPOST=0.9973;RSQ=0.9469;ERATE=0.0006;THETA=0.0280;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32752448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0164;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32752452 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0075;AVGPOST=0.9991;RSQ=0.9437;ERATE=0.0005;THETA=0.0205;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32752689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9697;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32752692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4940;ERATE=0.0004;THETA=0.0156;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32752864 . GTGTA G 725 PASS INDEL;BAVGPOST=0.879;BRSQ=0.405;LDAF=0.1599;AVGPOST=0.8255;RSQ=0.4705;ERATE=0.0162;THETA=0.0227;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 32752931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.831;BRSQ=0.713;LDAF=0.4043;AVGPOST=0.8011;RSQ=0.6816;ERATE=0.0280;THETA=0.0237;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 32752962 . T TAA 636 PASS INDEL;BAVGPOST=0.984;BRSQ=0.760;LDAF=0.0404;AVGPOST=0.9766;RSQ=0.7595;ERATE=0.0014;THETA=0.0015;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32752968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0094;AVGPOST=0.9978;RSQ=0.9079;ERATE=0.0006;THETA=0.0133;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32753037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.851;LDAF=0.2869;AVGPOST=0.9245;RSQ=0.8722;ERATE=0.0083;THETA=0.0190;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 32753205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0190;AVGPOST=0.9971;RSQ=0.9515;ERATE=0.0003;THETA=0.0093;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32753212 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6856;ERATE=0.0003;THETA=0.0106;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32753543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9408;ERATE=0.0003;THETA=0.0085;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32753555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9503;ERATE=0.0003;THETA=0.0227;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32753626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8928;ERATE=0.0004;THETA=0.0164;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32753670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1247;AVGPOST=0.9959;RSQ=0.9853;ERATE=0.0005;THETA=0.0026;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 32753691 . GCA G 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5516;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32753692 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.972;LDAF=0.5262;AVGPOST=0.9862;RSQ=0.9817;ERATE=0.0006;THETA=0.0053;AC=1146;AN=2184 GT:DS:GL:BD 0.52472526 1 1 32753733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0115;AVGPOST=0.9986;RSQ=0.9529;ERATE=0.0003;THETA=0.0015;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32753759 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1254;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0003;THETA=0.0013;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32753813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1255;AVGPOST=0.9984;RSQ=0.9945;ERATE=0.0004;THETA=0.0019;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32753907 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32754089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9998;RSQ=0.9953;ERATE=0.0003;THETA=0.0025;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32754144 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9363;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32754214 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7079;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=1547;AN=2184 GT:DS:GL:BD 0.70833331 1 1 32754262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7556;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32754289 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6337;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32754329 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.6956;AVGPOST=0.9946;RSQ=0.9904;ERATE=0.0006;THETA=0.0017;AC=1524;AN=2184 GT:DS:GL:BD 0.69780219 1 1 32754367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4767;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32754477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6759;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0005;THETA=0.0011;AC=1477;AN=2184 GT:DS:GL:BD 0.67628205 1 1 32754499 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5536;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32754547 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.979;LDAF=0.1419;AVGPOST=0.9878;RSQ=0.9665;ERATE=0.0005;THETA=0.0003;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 32754556 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.935;LDAF=0.0250;AVGPOST=0.9976;RSQ=0.9642;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32754595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.897;LDAF=0.0138;AVGPOST=0.9988;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32754600 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6969;AVGPOST=0.9986;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=1523;AN=2184 GT:DS:GL:BD 0.69734430 1 1 32754615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.957;LDAF=0.6566;AVGPOST=0.9599;RSQ=0.9394;ERATE=0.0090;THETA=0.0003;AC=1461;AN=2184 GT:DS:GL:BD 0.66895604 1 1 32754745 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0094;AVGPOST=0.9982;RSQ=0.9216;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32754759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0026;AVGPOST=0.9997;RSQ=0.9471;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32754820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6737;AVGPOST=0.9949;RSQ=0.9917;ERATE=0.0015;THETA=0.0010;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 32754835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9995;RSQ=0.9701;ERATE=0.0003;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32754869 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32754870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32754890 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7492;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32754974 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32755031 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32755037 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6758;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0005;THETA=0.0004;AC=1477;AN=2184 GT:DS:GL:BD 0.67628205 1 1 32755068 . AC A 12116 PASS INDEL;BAVGPOST=0.972;BRSQ=0.953;LDAF=0.6700;AVGPOST=0.9889;RSQ=0.9820;ERATE=0.0015;THETA=0.0008;AC=1472;AN=2184 GT:DS:GL:BD 0.67399269 1 1 32755069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6760;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=1477;AN=2184 GT:DS:GL:BD 0.67628205 1 1 32755070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32755133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6758;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=1477;AN=2184 GT:DS:GL:BD 0.67628205 1 1 32755136 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32755198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32755220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32755235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32755404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7987;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32755521 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0278;AVGPOST=0.9987;RSQ=0.9807;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32755601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6908;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32755671 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9986;RSQ=0.2429;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32755698 . C CGGT 2014 PASS INDEL;BAVGPOST=0.693;BRSQ=0.535;LDAF=0.3820;AVGPOST=0.7903;RSQ=0.7025;ERATE=0.0100;THETA=0.0005;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 32755763 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.7732;ERATE=0.0007;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32755801 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32755958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2693;AVGPOST=0.9976;RSQ=0.9952;ERATE=0.0004;THETA=0.0002;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 32755962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32755978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4378;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32755984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2713;AVGPOST=0.9871;RSQ=0.9741;ERATE=0.0020;THETA=0.0004;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 32755998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0066;AVGPOST=0.9936;RSQ=0.6247;ERATE=0.0008;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32756049 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0846;AVGPOST=0.9987;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 32756160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0485;AVGPOST=0.9977;RSQ=0.9774;ERATE=0.0006;THETA=0.0004;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 32756193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0232;AVGPOST=0.9991;RSQ=0.9860;ERATE=0.0003;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32756217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9894;AVGPOST=0.9989;RSQ=0.9491;ERATE=0.0005;THETA=0.0008;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 32756251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32756298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32756304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6599;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32756376 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7570;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32756423 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0034;AVGPOST=0.9985;RSQ=0.8537;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32756482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32756712 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9068;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32756723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32756765 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0786;AVGPOST=0.9994;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 32756792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32756849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9312;ERATE=0.0004;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32756910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3226;AVGPOST=0.9986;RSQ=0.9970;ERATE=0.0005;THETA=0.0003;AC=704;AN=2184 GT:DS:GL:BD 0.32234433 0 1 32756914 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8250;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32756924 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0208;AVGPOST=0.9993;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32757027 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0810;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0002;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 32757095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0367;AVGPOST=0.9986;RSQ=0.9858;ERATE=0.0004;THETA=0.0019;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32757125 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6045;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32757145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0177;AVGPOST=0.9992;RSQ=0.9786;ERATE=0.0004;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32757273 . C CAATA 613 PASS INDEL;BAVGPOST=0.991;BRSQ=0.784;LDAF=0.0210;AVGPOST=0.9956;RSQ=0.9149;ERATE=0.0008;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32757453 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2005;AVGPOST=0.9899;RSQ=0.9759;ERATE=0.0018;THETA=0.0012;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 32757456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9990;RSQ=0.9898;ERATE=0.0004;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 32757513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.858;LDAF=0.0160;AVGPOST=0.9917;RSQ=0.8132;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32757674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0795;AVGPOST=0.9976;RSQ=0.9864;ERATE=0.0006;THETA=0.0008;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 32757701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3476;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=758;AN=2184 GT:DS:GL:BD 0.34706959 0 1 32757748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8645;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32757848 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32757878 . G GA 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5387;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32757944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9899;AVGPOST=0.9997;RSQ=0.9848;ERATE=0.0003;THETA=0.0003;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 32757978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7794;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32758029 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6680;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32758059 rs11304386 CT C 15577 PASS INDEL;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1584;AVGPOST=0.9975;RSQ=0.9933;ERATE=0.0003;THETA=0.0006;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 32758081 . TC T 1024 PASS INDEL;BAVGPOST=0.957;BRSQ=0.836;LDAF=0.1533;AVGPOST=0.9941;RSQ=0.9820;ERATE=0.0005;THETA=0.0004;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 32758083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1125;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 32758151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2153;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=470;AN=2184 GT:DS:GL:BD 0.21520147 0 1 32758181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32758188 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32758192 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1595;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 32758263 . A AG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.4786;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32758318 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9596;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32758419 . ATG A 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5875;ERATE=0.0015;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32758576 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9921;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32758626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1596;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0004;THETA=0.0006;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 32758683 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32758696 rs11289180 GA G 868 PASS INDEL;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.0206;AVGPOST=0.9978;RSQ=0.9649;ERATE=0.0003;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32759076 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0203;AVGPOST=0.9984;RSQ=0.9744;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32759093 . TAAAAG T 1204 PASS INDEL;BAVGPOST=0.995;BRSQ=0.870;LDAF=0.0201;AVGPOST=0.9968;RSQ=0.9330;ERATE=0.0007;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32759093 . GAAAAGA G 2361 PASS INDEL;BAVGPOST=0.995;BRSQ=0.868;LDAF=0.0174;AVGPOST=0.9989;RSQ=0.9765;ERATE=0.0004;THETA=0.0007;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32759098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32759172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0126;AVGPOST=0.9991;RSQ=0.9700;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32759176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2040;AVGPOST=0.9950;RSQ=0.9873;ERATE=0.0023;THETA=0.0005;AC=444;AN=2184 GT:DS:GL:BD 0.20329671 0 1 32759186 rs57293342 GA G 6306 PASS INDEL;BAVGPOST=0.987;BRSQ=0.956;LDAF=0.1649;AVGPOST=0.9804;RSQ=0.9447;ERATE=0.0035;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 32759352 . A ATG 307 PASS INDEL;BAVGPOST=0.957;BRSQ=0.454;LDAF=0.0550;AVGPOST=0.9589;RSQ=0.6936;ERATE=0.0027;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 32759360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1584;AVGPOST=0.9989;RSQ=0.9965;ERATE=0.0004;THETA=0.0005;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 32759363 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6426;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32759434 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.613;LDAF=0.0051;AVGPOST=0.9968;RSQ=0.7461;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32759491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0172;AVGPOST=0.9987;RSQ=0.9679;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32759626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.7200;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32759745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0182;AVGPOST=0.9974;RSQ=0.9507;ERATE=0.0006;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32759770 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7488;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32759801 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1441;AVGPOST=0.9973;RSQ=0.9913;ERATE=0.0006;THETA=0.0003;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 32759829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.936;LDAF=0.0444;AVGPOST=0.9899;RSQ=0.9189;ERATE=0.0005;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 32759878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32759926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5587;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32759979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8493;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32760055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0174;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32760067 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0171;AVGPOST=0.9990;RSQ=0.9801;ERATE=0.0004;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32760148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1596;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0003;THETA=0.0007;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 32760183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6881;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32760212 . CAG C 10451 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0780;AVGPOST=0.9984;RSQ=0.9926;ERATE=0.0004;THETA=0.0005;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 32760277 . AAAAAT A 3963 PASS INDEL;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0423;AVGPOST=0.9955;RSQ=0.9570;ERATE=0.0007;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32760354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0036;AVGPOST=0.9969;RSQ=0.6908;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32760365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0471;AVGPOST=0.9997;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 32760439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0816;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0005;THETA=0.0005;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 32760453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32760533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2157;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 32760570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32760602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7018;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32760665 . CT C 817 PASS INDEL;BAVGPOST=0.996;BRSQ=0.734;LDAF=0.0098;AVGPOST=0.9932;RSQ=0.7384;ERATE=0.0006;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32760669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.6195;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32760684 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6471;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32760734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32760743 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9372;ERATE=0.0008;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32760805 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0084;AVGPOST=0.9985;RSQ=0.9260;ERATE=0.0004;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32760856 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1591;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=348;AN=2184 GT:DS:GL:BD 0.15934066 0 1 32760906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32760944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0195;AVGPOST=0.9993;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32760995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8776;ERATE=0.0005;THETA=0.0021;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32761029 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0047;AVGPOST=0.9980;RSQ=0.8286;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32761052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.890;LDAF=0.0098;AVGPOST=0.9953;RSQ=0.8111;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32761167 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32761277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8841;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32761357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1376;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 32761413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0064;AVGPOST=0.9987;RSQ=0.9138;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32761580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.567;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6374;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32761698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32761842 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7851;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32761875 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6543;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32761916 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6199;ERATE=0.0003;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32761951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.948;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9640;ERATE=0.0003;THETA=0.0099;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32762048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.635;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7382;ERATE=0.0005;THETA=0.0085;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32762060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0103;AVGPOST=0.9985;RSQ=0.9399;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32762158 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0026;AVGPOST=0.9997;RSQ=0.9595;ERATE=0.0003;THETA=0.0059;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32762433 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5141;AVGPOST=0.9950;RSQ=0.9927;ERATE=0.0019;THETA=0.0011;AC=1124;AN=2184 GT:DS:GL:BD 0.51465201 1 1 32762485 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.889;LDAF=0.0158;AVGPOST=0.9963;RSQ=0.9095;ERATE=0.0004;THETA=0.0039;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32762518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7610;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32762556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32762563 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1305;AVGPOST=0.9982;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 32762839 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32762857 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9586;ERATE=0.0003;THETA=0.0016;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32762975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32762987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32762990 . CACTT C 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8303;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32762993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7635;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32763050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8639;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32763051 . TC T 9808 PASS INDEL;BAVGPOST=0.958;BRSQ=0.926;LDAF=0.4419;AVGPOST=0.9456;RSQ=0.9208;ERATE=0.0062;THETA=0.0004;AC=985;AN=2184 GT:DS:GL:BD 0.45100734 0 1 32763065 rs5780539 CA C 55451 PASS INDEL;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.4647;AVGPOST=0.9876;RSQ=0.9823;ERATE=0.0009;THETA=0.0004;AC=1012;AN=2184 GT:DS:GL:BD 0.46336997 0 1 32763066 . T TC 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.4316;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32763123 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32763141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6573;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32763197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.940;LDAF=0.0186;AVGPOST=0.9962;RSQ=0.9208;ERATE=0.0006;THETA=0.0022;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32763246 . T TA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32763303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32763348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1303;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0041;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 32763391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1410;AVGPOST=0.9985;RSQ=0.9951;ERATE=0.0003;THETA=0.0006;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 32763635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3302;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0005;THETA=0.0005;AC=720;AN=2184 GT:DS:GL:BD 0.32967034 0 1 32763643 . C CA 461 PASS INDEL;BAVGPOST=0.971;BRSQ=0.567;LDAF=0.0579;AVGPOST=0.9313;RSQ=0.4733;ERATE=0.0245;THETA=0.0005;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 32763656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0989;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32763674 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0051;AVGPOST=0.9990;RSQ=0.9276;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32763685 . TTCTG T 4497 PASS INDEL;BAVGPOST=0.996;BRSQ=0.908;LDAF=0.0241;AVGPOST=0.9953;RSQ=0.9230;ERATE=0.0008;THETA=0.0002;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32763759 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0258;AVGPOST=0.9986;RSQ=0.9775;ERATE=0.0004;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32763979 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4606;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0005;THETA=0.0003;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 32763996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6500;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0005;THETA=0.0005;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 32764241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6322;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32764347 . GATT G 1033 PASS INDEL;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9428;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32764398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8124;AVGPOST=0.9982;RSQ=0.9941;ERATE=0.0006;THETA=0.0004;AC=1775;AN=2184 GT:DS:GL:BD 0.81272894 1 1 32764410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6022;AVGPOST=0.9943;RSQ=0.9911;ERATE=0.0014;THETA=0.0003;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 32764605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6901;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32764655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7049;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32764812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4748;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32764940 . G GGAAAAA 34373 PASS INDEL;BAVGPOST=0.932;BRSQ=0.896;LDAF=0.4539;AVGPOST=0.9881;RSQ=0.9802;ERATE=0.0011;THETA=0.0002;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 32764973 . G GA 7264 PASS INDEL;BAVGPOST=0.863;BRSQ=0.668;LDAF=0.2916;AVGPOST=0.8410;RSQ=0.6708;ERATE=0.0383;THETA=0.0003;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 32764980 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.977;LDAF=0.4519;AVGPOST=0.9956;RSQ=0.9932;ERATE=0.0006;THETA=0.0003;AC=988;AN=2184 GT:DS:GL:BD 0.45238096 0 1 32764994 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3290;AVGPOST=0.9975;RSQ=0.9949;ERATE=0.0005;THETA=0.0002;AC=718;AN=2184 GT:DS:GL:BD 0.32875457 0 1 32765078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32765166 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.894;LDAF=0.0231;AVGPOST=0.9931;RSQ=0.8808;ERATE=0.0006;THETA=0.0012;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32765273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9664;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32765344 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0003;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32765356 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0293;AVGPOST=0.9988;RSQ=0.9852;ERATE=0.0003;THETA=0.0002;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32765422 . A AT 89 PASS INDEL;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0098;AVGPOST=0.9981;RSQ=0.9250;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32765494 . T TA 1231 PASS INDEL;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0097;AVGPOST=0.9983;RSQ=0.9332;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32765495 . CTTTTG C 172 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32765520 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32765526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4606;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0006;THETA=0.0002;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 32765573 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0243;AVGPOST=0.9950;RSQ=0.9272;ERATE=0.0005;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32765707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1315;AVGPOST=0.9995;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 32765733 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32765741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32765772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7980;ERATE=0.0003;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32765791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8708;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32765857 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5994;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32765877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32765921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32766108 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6610;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32766285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1240;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0002;THETA=0.0002;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 32766705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32766932 . CA C 294 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8964;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32767156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2476;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=542;AN=2184 GT:DS:GL:BD 0.24816850 0 1 32767216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2120;AVGPOST=0.9969;RSQ=0.9930;ERATE=0.0008;THETA=0.0005;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 32767337 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.778;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8317;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32767529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32767588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6386;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32767589 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.4759;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32767620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32767716 . GA G 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32767722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0135;AVGPOST=0.9974;RSQ=0.9225;ERATE=0.0003;THETA=0.0001;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32767807 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8083;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32767921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6743;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32767960 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0002;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32768239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5287;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32768336 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8470;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32768337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8168;ERATE=0.0002;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32768577 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5932;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32768602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0875;AVGPOST=0.9977;RSQ=0.9896;ERATE=0.0004;THETA=0.0008;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 32768717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7932;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32768917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0053;AVGPOST=0.9981;RSQ=0.8471;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32768967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9264;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32769151 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32769193 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0002;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32769345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1213;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 32769350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9623;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32769537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32769556 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32769614 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32769621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.6022;AVGPOST=0.9914;RSQ=0.9879;ERATE=0.0034;THETA=0.0002;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 32769623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8666;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32769641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6467;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32769642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6270;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32769669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5243;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32769670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32769674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9027;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32769704 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0992;AVGPOST=0.9979;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 32769873 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8825;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32769908 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.841;LDAF=0.0213;AVGPOST=0.9935;RSQ=0.8792;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32769925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0002;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32769988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6809;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32769989 . C CA 262 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32770025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32770090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1340;AVGPOST=0.9936;RSQ=0.9806;ERATE=0.0005;THETA=0.0004;AC=292;AN=2184 GT:DS:GL:BD 0.13369964 0 1 32770280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.4719;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32770487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4355;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32770488 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0151;AVGPOST=0.9989;RSQ=0.9700;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32770517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1196;AVGPOST=0.9980;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 32770575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.666;LDAF=0.9843;AVGPOST=0.9904;RSQ=0.7595;ERATE=0.0008;THETA=0.0002;AC=2156;AN=2184 GT:DS:GL:BD 0.98717946 1 1 32770639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32770787 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8363;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32770842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9592;ERATE=0.0002;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32770891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0072;AVGPOST=0.9937;RSQ=0.6922;ERATE=0.0006;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32770960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32771052 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.0663;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 32771107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8034;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32771110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9070;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32771204 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.9255;ERATE=0.0002;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32771232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0002;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32771249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6828;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32771275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0002;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32771328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32771386 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7277;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32771511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32771519 . G GT 811 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.8978;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32771679 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9792;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32771696 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0324;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32771697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8240;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32771786 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5664;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32771794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6237;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32771889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32772064 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32772128 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0002;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32772160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5441;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32772286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0722;AVGPOST=0.9988;RSQ=0.9918;ERATE=0.0002;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 32772300 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6168;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32772329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6714;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32772356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9818;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32772511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32772660 . AAG A 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7430;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32772699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0120;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32772713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0190;AVGPOST=0.9993;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32772744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9497;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32772845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0231;AVGPOST=0.9991;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32772863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32773102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32773165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0247;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32773311 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0306;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0002;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32773461 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0297;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0002;THETA=0.0002;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32773520 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0119;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32773526 . GACA G 221 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5504;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32773547 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8778;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32773744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32773833 . T TA 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32773849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32773882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0181;AVGPOST=0.9993;RSQ=0.9840;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32773938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0002;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32773955 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7974;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32774016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0164;AVGPOST=0.9996;RSQ=0.9885;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32774065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9068;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32774349 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32774436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9998;RSQ=0.9932;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32774472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32774490 . GGA G 74 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4780;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32774543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0002;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32774610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0081;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32774770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8407;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32774778 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7355;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32774779 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0258;AVGPOST=0.9984;RSQ=0.9729;ERATE=0.0002;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32774791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0755;AVGPOST=0.9982;RSQ=0.9894;ERATE=0.0003;THETA=0.0007;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 32774899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32775123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0002;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32775140 . G GA 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6983;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32775369 . CCAAG C 4302 PASS INDEL;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0343;AVGPOST=0.9962;RSQ=0.9583;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32775392 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9328;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32775415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0306;AVGPOST=0.9995;RSQ=0.9928;ERATE=0.0002;THETA=0.0005;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32775420 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32775447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5655;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32775504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32775572 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0477;AVGPOST=0.9989;RSQ=0.9905;ERATE=0.0004;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32775605 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5924;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32775851 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32775885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6787;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32775960 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0220;AVGPOST=0.9997;RSQ=0.9937;ERATE=0.0002;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32776009 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8321;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32776027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0042;AVGPOST=0.9976;RSQ=0.7947;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32776061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9140;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32776063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0320;AVGPOST=0.9986;RSQ=0.9848;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32776103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0004;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32776250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32776265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32776353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9199;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32776372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32776413 rs35282242 G GA 665 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9141;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32776508 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32776549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.491;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.3739;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32776683 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8500;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32776844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9994;RSQ=0.9771;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32776896 . C CA 439 PASS INDEL;BAVGPOST=0.954;BRSQ=0.553;LDAF=0.0944;AVGPOST=0.8925;RSQ=0.4823;ERATE=0.0309;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 32776946 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0097;AVGPOST=0.9979;RSQ=0.9109;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32776954 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0044;AVGPOST=0.9989;RSQ=0.8957;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32776957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0035;AVGPOST=0.9964;RSQ=0.6305;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32777118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6966;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32777119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8560;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32777204 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8695;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32777243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4873;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32777382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0404;AVGPOST=0.9963;RSQ=0.9648;ERATE=0.0003;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32777412 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8527;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32777459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.963;LDAF=0.4421;AVGPOST=0.9748;RSQ=0.9651;ERATE=0.0049;THETA=0.0005;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 32777484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0296;AVGPOST=0.9982;RSQ=0.9751;ERATE=0.0004;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32777538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4470;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0006;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 32777744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32777776 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32777787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32777878 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778012 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778076 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778216 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32778289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778350 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0403;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32778372 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2765;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 32778490 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9677;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32778491 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9790;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32778513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32778518 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6525;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32778597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9513;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32778689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7817;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32778770 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.9957;AVGPOST=0.9983;RSQ=0.8457;ERATE=0.0004;THETA=0.0005;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 32778930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.575;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4274;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3593;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32778990 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9592;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32779006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0067;AVGPOST=0.9971;RSQ=0.8026;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32779026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7212;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32779035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5051;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32779069 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8802;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32779101 rs71701779 CAA C 369 PASS INDEL;BAVGPOST=0.996;BRSQ=0.714;LDAF=0.0096;AVGPOST=0.9927;RSQ=0.6743;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32779188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4464;AVGPOST=0.9964;RSQ=0.9953;ERATE=0.0007;THETA=0.0006;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 32779238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32779309 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0232;AVGPOST=0.9992;RSQ=0.9858;ERATE=0.0003;THETA=0.0009;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32779343 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32779429 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32779644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0438;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0007;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 32779767 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32779783 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32779822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32779864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2768;AVGPOST=0.9987;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=604;AN=2184 GT:DS:GL:BD 0.27655679 0 1 32780195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0064;AVGPOST=0.9993;RSQ=0.9533;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32780214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32780511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32780566 . TTTTC T 2423 PASS INDEL;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0251;AVGPOST=0.9958;RSQ=0.9316;ERATE=0.0005;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32780599 . TC T 1599 PASS INDEL;BAVGPOST=0.987;BRSQ=0.766;LDAF=0.0480;AVGPOST=0.9602;RSQ=0.6635;ERATE=0.0080;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32780610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9686;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32780624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8281;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32780694 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9992;RSQ=0.9864;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32780754 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.390;LDAF=0.9711;AVGPOST=0.9604;RSQ=0.4657;ERATE=0.0111;THETA=0.0007;AC=2152;AN=2184 GT:DS:GL:BD 0.98534799 1 1 32780785 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32780813 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32780832 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32780947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8194;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6407;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32781308 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0297;AVGPOST=0.9983;RSQ=0.9756;ERATE=0.0003;THETA=0.0013;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32781355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5335;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32781454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8829;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32781516 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32781525 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6848;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9335;ERATE=0.0003;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32781545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7727;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32781592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7797;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32781737 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32781911 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0025;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32781939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.1615;AVGPOST=0.9963;RSQ=0.9907;ERATE=0.0003;THETA=0.0021;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 32781990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32782107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.8325;ERATE=0.0003;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32782108 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9324;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32782117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0394;AVGPOST=0.9993;RSQ=0.9924;ERATE=0.0003;THETA=0.0013;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32782170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0118;AVGPOST=0.9993;RSQ=0.9732;ERATE=0.0003;THETA=0.0017;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32782185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7382;ERATE=0.0004;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32782207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5587;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32782267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32782307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9987;RSQ=0.9627;ERATE=0.0004;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32782450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0151;AVGPOST=0.9966;RSQ=0.9136;ERATE=0.0006;THETA=0.0013;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32782453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0523;AVGPOST=0.9983;RSQ=0.9879;ERATE=0.0003;THETA=0.0009;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32782466 . GGA G 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4735;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32782469 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9787;ERATE=0.0003;THETA=0.0014;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32782481 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8613;ERATE=0.0004;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32782525 . G GC 762 PASS INDEL;BAVGPOST=0.979;BRSQ=0.823;LDAF=0.0440;AVGPOST=0.9729;RSQ=0.7576;ERATE=0.0010;THETA=0.0010;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 32782639 . GCA G 132 PASS INDEL;BAVGPOST=0.975;BRSQ=0.521;LDAF=0.0384;AVGPOST=0.9541;RSQ=0.5295;ERATE=0.0107;THETA=0.0013;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32782653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9653;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32782779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32783001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9817;ERATE=0.0003;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32783020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8117;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32783042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8126;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32783052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0133;AVGPOST=0.9991;RSQ=0.9749;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32783095 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9745;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32783374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7890;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32783545 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9149;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32783600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32783604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8206;ERATE=0.0005;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32783843 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7861;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32783870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0505;AVGPOST=0.9994;RSQ=0.9947;ERATE=0.0003;THETA=0.0018;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32783891 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7225;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32783924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32783953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32784022 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32784306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32784464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32784554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32784561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32784577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9041;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32784589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.854;LDAF=0.0035;AVGPOST=0.9982;RSQ=0.7956;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32784833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32784868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32785192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32785197 . AT A 231 PASS INDEL;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5786;ERATE=0.0004;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32785248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32785294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8638;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32785399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.951;LDAF=0.0110;AVGPOST=0.9982;RSQ=0.9294;ERATE=0.0004;THETA=0.0021;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32785462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32785511 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0004;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32785516 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0078;AVGPOST=0.9993;RSQ=0.9611;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32785519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0502;AVGPOST=0.9985;RSQ=0.9893;ERATE=0.0003;THETA=0.0021;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32785573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9282;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32785575 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32785576 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0139;AVGPOST=0.9994;RSQ=0.9802;ERATE=0.0003;THETA=0.0020;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32785611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32785681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8862;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32785807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0147;AVGPOST=0.9956;RSQ=0.8925;ERATE=0.0003;THETA=0.0015;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32785850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8560;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32785871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.9026;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32786002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32786122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32786205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0310;AVGPOST=0.9954;RSQ=0.9413;ERATE=0.0006;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 32786332 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1073;AVGPOST=0.9948;RSQ=0.9845;ERATE=0.0009;THETA=0.0006;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 32786342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0077;AVGPOST=0.9969;RSQ=0.8322;ERATE=0.0006;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32786457 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.7602;AVGPOST=0.9975;RSQ=0.9940;ERATE=0.0006;THETA=0.0012;AC=1661;AN=2184 GT:DS:GL:BD 0.76053113 1 1 32786617 . TG T 109 PASS INDEL;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3084;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32786647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32786896 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5491;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32787408 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0065;AVGPOST=0.9987;RSQ=0.9144;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32787447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7102;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32787585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32787623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32787633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32787702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32787776 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32788019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32788105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32788157 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32788357 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7131;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32788476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9069;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32788596 rs68009351 TTGTC T 88952 PASS INDEL;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6338;AVGPOST=0.9856;RSQ=0.9760;ERATE=0.0045;THETA=0.0003;AC=1392;AN=2184 GT:DS:GL:BD 0.63736266 1 1 32788658 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32788708 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.958;LDAF=0.1356;AVGPOST=0.9871;RSQ=0.9605;ERATE=0.0005;THETA=0.0015;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 32788729 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9564;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32788868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0453;AVGPOST=0.9989;RSQ=0.9882;ERATE=0.0004;THETA=0.0008;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32788894 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1080;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0006;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 32788921 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0123;AVGPOST=0.9976;RSQ=0.9146;ERATE=0.0011;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32789018 . A AG 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32789027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5646;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=1233;AN=2184 GT:DS:GL:BD 0.56456041 1 1 32789055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32789280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7921;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32789331 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7431;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32789629 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8514;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32789873 . TG T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5794;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32790006 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9056;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32790028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0146;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32790052 . CT C 220 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6304;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32790053 . AT A 54 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0037;AVGPOST=0.9949;RSQ=0.4585;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32790061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5381;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32790164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32790289 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32790349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4928;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32790448 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32790762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32790941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5699;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32790942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32790986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7603;AVGPOST=0.9979;RSQ=0.9949;ERATE=0.0005;THETA=0.0002;AC=1662;AN=2184 GT:DS:GL:BD 0.76098901 1 1 32791040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32791086 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7401;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32791089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8806;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32791152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32791160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32791287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0550;AVGPOST=0.9992;RSQ=0.9944;ERATE=0.0003;THETA=0.0010;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 32791324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32791399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32791408 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0026;AVGPOST=0.9991;RSQ=0.8753;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32791675 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32791894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9231;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32792075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6396;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32792181 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8911;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32792207 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0169;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32792234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32792238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32792477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0170;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0004;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32792496 . CCTTT C 141 PASS INDEL;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32792511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0049;AVGPOST=0.9982;RSQ=0.8645;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32792579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0043;AVGPOST=0.9975;RSQ=0.7716;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32792613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.577;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5229;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32792628 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5369;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32792785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32792991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32793096 . ACAT A 5133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0250;AVGPOST=0.9974;RSQ=0.9636;ERATE=0.0004;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32793149 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5749;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32793164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.9962;AVGPOST=0.9994;RSQ=0.9338;ERATE=0.0003;THETA=0.0017;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 32793190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32793257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0059;AVGPOST=0.9989;RSQ=0.9255;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32793481 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32793498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6225;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32793521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9666;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0011;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 32793655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9335;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32793831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7834;ERATE=0.0007;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32794029 . CAG C 342 PASS INDEL;BAVGPOST=0.998;BRSQ=0.744;LDAF=0.0055;AVGPOST=0.9961;RSQ=0.6791;ERATE=0.0005;THETA=0.0025;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32794157 . G GA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4347;ERATE=0.0007;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32794224 . AG A 64 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0027;AVGPOST=0.9971;RSQ=0.5408;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32794279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4557;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32794309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8664;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32794340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5242;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32794432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4024;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32794570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0177;AVGPOST=0.9980;RSQ=0.9583;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32794575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9207;AVGPOST=0.9975;RSQ=0.9855;ERATE=0.0003;THETA=0.0004;AC=2012;AN=2184 GT:DS:GL:BD 0.92124540 1 1 32794618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32794648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.5098;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32794663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0168;AVGPOST=0.9991;RSQ=0.9777;ERATE=0.0004;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32794686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0114;AVGPOST=0.9992;RSQ=0.9719;ERATE=0.0003;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32794698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6626;AVGPOST=0.9930;RSQ=0.9860;ERATE=0.0006;THETA=0.0008;AC=1447;AN=2184 GT:DS:GL:BD 0.66254580 1 1 32794768 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7493;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32794809 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0166;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32794922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9998;RSQ=0.9695;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32795076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32795177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32795221 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32795433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8914;ERATE=0.0007;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32795649 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.6104;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32795718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8354;ERATE=0.0003;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32795789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8662;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32796158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5987;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32796273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4410;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32796369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.7415;AVGPOST=0.9963;RSQ=0.9924;ERATE=0.0003;THETA=0.0004;AC=1618;AN=2184 GT:DS:GL:BD 0.74084246 1 1 32796501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4074;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32796505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.519;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4962;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32796629 . TAGTC T 97 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32796713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32796749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.6050;ERATE=0.0003;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32796818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6772;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32796990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0698;AVGPOST=0.9988;RSQ=0.9930;ERATE=0.0003;THETA=0.0025;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 32796991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4509;AVGPOST=0.9978;RSQ=0.9969;ERATE=0.0006;THETA=0.0001;AC=987;AN=2184 GT:DS:GL:BD 0.45192307 0 1 32797090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4211;AVGPOST=0.9984;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 32797115 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32797126 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3955;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0005;THETA=0.0006;AC=865;AN=2184 GT:DS:GL:BD 0.39606228 0 1 32797362 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0307;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32797416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32797474 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9608;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32797509 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0293;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32797520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32797526 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0326;AVGPOST=0.9988;RSQ=0.9865;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 32797548 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7939;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32797699 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32797837 . TGC T 24385 PASS INDEL;BAVGPOST=0.916;BRSQ=0.837;LDAF=0.5580;AVGPOST=0.8872;RSQ=0.8222;ERATE=0.0402;THETA=0.0002;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 32797883 rs35808283 TG T 1362 PASS INDEL;BAVGPOST=0.791;BRSQ=0.645;LDAF=0.3182;AVGPOST=0.7881;RSQ=0.6681;ERATE=0.0285;THETA=0.0001;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 32797891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32798009 . GT G 138 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9985;RSQ=0.8303;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32798009 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0327;AVGPOST=0.9991;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 32798089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1106;AVGPOST=0.9986;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 32798163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1273;AVGPOST=0.9970;RSQ=0.9884;ERATE=0.0004;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 32798403 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8795;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32798460 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7914;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32798465 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.0721;AVGPOST=0.9989;RSQ=0.9930;ERATE=0.0004;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 32798621 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1827;AVGPOST=0.9968;RSQ=0.9903;ERATE=0.0010;THETA=0.0002;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 32798669 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.1816;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0005;THETA=0.0007;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 32798707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0727;AVGPOST=0.9991;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 32799043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7950;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32799046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3252;AVGPOST=0.9968;RSQ=0.9947;ERATE=0.0008;THETA=0.0003;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 32799198 . A AC 104 PASS INDEL;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7412;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32799202 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0882;AVGPOST=0.9989;RSQ=0.9958;ERATE=0.0004;THETA=0.0006;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 32799398 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6248;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32799433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32799611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9321;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32799643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32799680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0139;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0003;THETA=0.0013;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32799711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1105;AVGPOST=0.9994;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 32799798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2201;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=479;AN=2184 GT:DS:GL:BD 0.21932234 0 1 32799814 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6980;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32800000 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7852;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0004;THETA=0.0006;AC=1715;AN=2184 GT:DS:GL:BD 0.78525639 1 1 32800027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.939;LDAF=0.0833;AVGPOST=0.9960;RSQ=0.9809;ERATE=0.0004;THETA=0.0015;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 32800028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0303;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32800056 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0250;AVGPOST=0.9983;RSQ=0.9693;ERATE=0.0004;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32800061 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9990;RSQ=0.9440;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32800102 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32800113 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0179;AVGPOST=0.9995;RSQ=0.9880;ERATE=0.0003;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32800147 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32800161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5265;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32800168 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9988;RSQ=0.9837;ERATE=0.0003;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 32800222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4966;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32800254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.871;LDAF=0.0534;AVGPOST=0.9884;RSQ=0.9163;ERATE=0.0006;THETA=0.0008;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32800456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8099;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32800478 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7798;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0004;THETA=0.0003;AC=1703;AN=2184 GT:DS:GL:BD 0.77976191 1 1 32800547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7440;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32800654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5363;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32800715 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2376;AVGPOST=0.9974;RSQ=0.9945;ERATE=0.0004;THETA=0.0004;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 32800718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0073;AVGPOST=0.9968;RSQ=0.8329;ERATE=0.0008;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32800879 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8225;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32800899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7111;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32800915 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32800992 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1100;AVGPOST=0.9989;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 32801034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32801116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0106;AVGPOST=0.9993;RSQ=0.9732;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32801130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1098;AVGPOST=0.9983;RSQ=0.9926;ERATE=0.0005;THETA=0.0002;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 32801139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.929;LDAF=0.0114;AVGPOST=0.9980;RSQ=0.9267;ERATE=0.0005;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32801219 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0207;AVGPOST=0.9997;RSQ=0.9924;ERATE=0.0003;THETA=0.0002;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32801256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0037;AVGPOST=0.9952;RSQ=0.4919;ERATE=0.0011;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32801275 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32801276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9093;ERATE=0.0003;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32801356 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0860;AVGPOST=0.9981;RSQ=0.9913;ERATE=0.0003;THETA=0.0014;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 32801403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0045;AVGPOST=0.9938;RSQ=0.4100;ERATE=0.0018;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32801793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.360;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.2667;ERATE=0.0011;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32801801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.556;LDAF=0.0018;AVGPOST=0.9977;RSQ=0.4168;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32801823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0274;AVGPOST=0.9992;RSQ=0.9873;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32801866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0039;AVGPOST=0.9941;RSQ=0.3819;ERATE=0.0009;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32801985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5341;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32802022 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0277;AVGPOST=0.9986;RSQ=0.9803;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32802118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9477;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32802148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7941;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32802441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0271;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32802500 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0095;AVGPOST=0.9973;RSQ=0.8921;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32802514 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8725;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32802540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4825;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32802545 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32802580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8182;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32802700 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0475;AVGPOST=0.9976;RSQ=0.9832;ERATE=0.0004;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 32802839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7957;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32802868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9595;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32802886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7548;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32802956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32803082 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0149;AVGPOST=0.9954;RSQ=0.8862;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32803163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0069;AVGPOST=0.9955;RSQ=0.7666;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32803228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.787;LDAF=0.0071;AVGPOST=0.9960;RSQ=0.7745;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32803244 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0253;AVGPOST=0.9971;RSQ=0.9535;ERATE=0.0007;THETA=0.0008;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32803276 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7402;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32803454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8344;ERATE=0.0012;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32803555 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0270;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32803639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32803670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0022;AVGPOST=0.9994;RSQ=0.8949;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32803693 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6662;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32803758 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0063;AVGPOST=0.9963;RSQ=0.7856;ERATE=0.0022;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32803883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0062;AVGPOST=0.9978;RSQ=0.8727;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32803968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0387;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0004;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 32803997 . AT A 2939 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0275;AVGPOST=0.9985;RSQ=0.9775;ERATE=0.0006;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32804005 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32804062 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9749;ERATE=0.0003;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32804138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6362;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32804146 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5742;ERATE=0.0011;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32804180 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9831;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32804247 rs67805808 A ACC 24755 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.4239;AVGPOST=0.9870;RSQ=0.9779;ERATE=0.0010;THETA=0.0003;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 32804292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.5898;ERATE=0.0006;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32804305 . C CAT 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9988;RSQ=0.8217;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32804396 . C CT 134 PASS INDEL;BAVGPOST=0.973;BRSQ=0.502;LDAF=0.0509;AVGPOST=0.9336;RSQ=0.4305;ERATE=0.0161;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32804417 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0173;AVGPOST=0.9981;RSQ=0.9537;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32804480 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32804484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.949;LDAF=0.0776;AVGPOST=0.9986;RSQ=0.9920;ERATE=0.0004;THETA=0.0004;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 32804492 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0388;AVGPOST=0.9989;RSQ=0.9861;ERATE=0.0004;THETA=0.0013;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 32804544 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9992;RSQ=0.9514;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32804753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5409;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32804887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32804919 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32804922 . TC T 323 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9230;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32805084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7129;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32805135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1264;AVGPOST=0.9970;RSQ=0.9890;ERATE=0.0005;THETA=0.0006;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 32805306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32805349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8673;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32805469 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7728;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32805551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0386;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 32805680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8205;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32805779 . TTTTC T 364 PASS INDEL;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0062;AVGPOST=0.9971;RSQ=0.8229;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32805924 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0277;AVGPOST=0.9985;RSQ=0.9796;ERATE=0.0004;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32805989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7114;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32806133 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32806134 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32806166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.789;LDAF=0.0106;AVGPOST=0.9961;RSQ=0.8567;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32806197 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3206;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32806226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3215;AVGPOST=0.9867;RSQ=0.9758;ERATE=0.0004;THETA=0.0006;AC=703;AN=2184 GT:DS:GL:BD 0.32188645 0 1 32806268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 32806384 . AT A 490 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8977;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32806464 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9739;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32806473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9317;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32806507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9610;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32806525 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32806660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9993;RSQ=0.9794;ERATE=0.0004;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32806661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5838;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0006;THETA=0.0003;AC=1277;AN=2184 GT:DS:GL:BD 0.58470696 1 1 32806851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6209;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32806936 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9114;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32807116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4436;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32807248 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5656;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32807311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6760;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32807394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0430;AVGPOST=0.9989;RSQ=0.9896;ERATE=0.0004;THETA=0.0002;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32807510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.7305;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32807642 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32807645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8618;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32807686 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9994;RSQ=0.9717;ERATE=0.0002;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32807808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1777;AVGPOST=0.9963;RSQ=0.9908;ERATE=0.0007;THETA=0.0003;AC=390;AN=2184 GT:DS:GL:BD 0.17857143 0 1 32807863 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9705;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32807907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6468;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32808010 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32808059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0996;AVGPOST=0.9991;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32808171 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32808343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32808383 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32808642 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32808737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0577;AVGPOST=0.9988;RSQ=0.9909;ERATE=0.0003;THETA=0.0003;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 32808756 rs71674128 TTGTC T 33557 PASS INDEL;BAVGPOST=0.990;BRSQ=0.972;LDAF=0.2031;AVGPOST=0.9955;RSQ=0.9887;ERATE=0.0014;THETA=0.0006;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 32808795 . A AT 4228 PASS INDEL;BAVGPOST=0.993;BRSQ=0.977;LDAF=0.1545;AVGPOST=0.9980;RSQ=0.9939;ERATE=0.0002;THETA=0.0002;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 32808879 rs36000672 T TG 23364 PASS INDEL;BAVGPOST=0.993;BRSQ=0.976;LDAF=0.1545;AVGPOST=0.9968;RSQ=0.9899;ERATE=0.0004;THETA=0.0006;AC=338;AN=2184 GT:DS:GL:BD 0.15476191 0 1 32808881 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32808893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8976;ERATE=0.0002;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32809003 . A AG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6047;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32809113 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32809177 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0428;AVGPOST=0.9990;RSQ=0.9895;ERATE=0.0003;THETA=0.0003;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32809379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32809455 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9637;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32809462 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5170;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=1131;AN=2184 GT:DS:GL:BD 0.51785713 1 1 32809548 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7846;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32809565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5179;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0006;THETA=0.0002;AC=1133;AN=2184 GT:DS:GL:BD 0.51877290 1 1 32809663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5073;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32809671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0430;AVGPOST=0.9988;RSQ=0.9886;ERATE=0.0003;THETA=0.0002;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32809680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6372;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32809793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6643;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32809861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.696;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6800;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32810130 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0273;AVGPOST=0.9993;RSQ=0.9893;ERATE=0.0003;THETA=0.0002;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32810188 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.8094;ERATE=0.0002;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32810402 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8330;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32810509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8120;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32810588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8996;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32810591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6956;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32810674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0025;AVGPOST=0.9990;RSQ=0.8632;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32810683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3402;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0007;THETA=0.0002;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 32810739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9821;ERATE=0.0002;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32810745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0162;AVGPOST=0.9989;RSQ=0.9709;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32811035 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0116;AVGPOST=0.9988;RSQ=0.9564;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32811118 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9175;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32811148 . T TG 255 PASS INDEL;BAVGPOST=0.990;BRSQ=0.735;LDAF=0.0245;AVGPOST=0.9921;RSQ=0.8726;ERATE=0.0007;THETA=0.0001;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32811164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.938;LDAF=0.0718;AVGPOST=0.9697;RSQ=0.8279;ERATE=0.0078;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 32811167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8701;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32811365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0705;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0002;THETA=0.0002;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 32811435 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0459;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 32811514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0283;AVGPOST=0.9973;RSQ=0.9695;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32811519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7621;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32811532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9629;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32811680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32811774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1779;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0002;THETA=0.0004;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 32811775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32811781 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32811848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0726;AVGPOST=0.9967;RSQ=0.9831;ERATE=0.0004;THETA=0.0007;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 32811867 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32812005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6944;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32812026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0181;AVGPOST=0.9992;RSQ=0.9811;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32812110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6178;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0004;THETA=0.0005;AC=1349;AN=2184 GT:DS:GL:BD 0.61767399 1 1 32812135 . A AT 85 PASS INDEL;BAVGPOST=0.994;BRSQ=0.485;LDAF=0.0087;AVGPOST=0.9901;RSQ=0.5625;ERATE=0.0019;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32812160 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9431;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=2060;AN=2184 GT:DS:GL:BD 0.94322342 1 1 32812179 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9110;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32812289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=0.9996;RSQ=0.9806;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32812559 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9998;RSQ=0.9927;ERATE=0.0003;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32812560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32812591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7941;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32812660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9145;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32812669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0892;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 32812678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6638;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32812682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5956;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32812734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32812758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32812787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9896;AVGPOST=0.9983;RSQ=0.9315;ERATE=0.0003;THETA=0.0003;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 32812821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32812837 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7190;ERATE=0.0007;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32812849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0106;AVGPOST=0.9996;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32813050 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32813177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32813198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0709;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0003;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32813291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0696;AVGPOST=0.9991;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 32813426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0697;AVGPOST=0.9992;RSQ=0.9948;ERATE=0.0003;THETA=0.0008;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 32813427 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0711;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32813475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8540;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0004;THETA=0.0005;AC=1866;AN=2184 GT:DS:GL:BD 0.85439563 1 1 32813588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.646;LDAF=0.0330;AVGPOST=0.9669;RSQ=0.6119;ERATE=0.0112;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32813632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9432;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=2060;AN=2184 GT:DS:GL:BD 0.94322342 1 1 32813794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32813874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32813967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9140;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32814003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2034;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 32814045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6374;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32814100 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32814134 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0330;AVGPOST=0.9998;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32814135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32814143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32814165 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0710;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0005;THETA=0.0014;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32814211 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0105;AVGPOST=0.9997;RSQ=0.9876;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32814253 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0708;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32814380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0709;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32814391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.846;LDAF=0.0066;AVGPOST=0.9989;RSQ=0.9234;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32814664 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8830;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32814703 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6869;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32814709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0710;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32814796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0709;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32814840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0163;AVGPOST=0.9988;RSQ=0.9748;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32814896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0183;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32814951 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32815001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32815125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7911;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32815208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0330;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0007;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32815209 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6192;ERATE=0.0006;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32815255 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7815;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32815408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0216;AVGPOST=0.9995;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32815561 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6936;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32815728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0329;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0003;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32815739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32815757 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8896;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32815849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9022;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32815889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32815917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0675;AVGPOST=0.9988;RSQ=0.9926;ERATE=0.0004;THETA=0.0006;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32816156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32816169 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32816260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32816296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0030;AVGPOST=0.9993;RSQ=0.8986;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32816376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0077;AVGPOST=0.9979;RSQ=0.8998;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32816429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9998;RSQ=0.9927;ERATE=0.0003;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32816478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8567;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32816637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0075;AVGPOST=0.9983;RSQ=0.8988;ERATE=0.0004;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32816651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32816818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8750;ERATE=0.0003;THETA=0.0131;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32816943 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3370;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32817025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.978;LDAF=0.3148;AVGPOST=0.9926;RSQ=0.9870;ERATE=0.0007;THETA=0.0007;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 32817165 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.961;LDAF=0.7464;AVGPOST=0.9846;RSQ=0.9683;ERATE=0.0038;THETA=0.0006;AC=1635;AN=2184 GT:DS:GL:BD 0.74862635 1 1 32817193 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0070;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32817202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7835;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32817238 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7535;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32817294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3099;AVGPOST=0.9941;RSQ=0.9894;ERATE=0.0004;THETA=0.0012;AC=676;AN=2184 GT:DS:GL:BD 0.30952382 0 1 32817370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0314;AVGPOST=0.9981;RSQ=0.9760;ERATE=0.0003;THETA=0.0061;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32817371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6390;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32817373 . T TC 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4846;ERATE=0.0005;THETA=0.0046;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32817396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0454;AVGPOST=0.9988;RSQ=0.9881;ERATE=0.0004;THETA=0.0024;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 32817431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32817503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5410;AVGPOST=0.9897;RSQ=0.9856;ERATE=0.0007;THETA=0.0003;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 32817633 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0205;AVGPOST=0.9980;RSQ=0.9636;ERATE=0.0004;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32817645 . G GA 87 PASS INDEL;BAVGPOST=0.996;BRSQ=0.625;LDAF=0.0135;AVGPOST=0.9808;RSQ=0.4229;ERATE=0.0038;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32817766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0050;AVGPOST=0.9986;RSQ=0.9072;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32817878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9656;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32817915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8819;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32818049 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.9025;ERATE=0.0003;THETA=0.0017;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32818078 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0027;AVGPOST=0.9963;RSQ=0.4583;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32818416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6726;ERATE=0.0003;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32818418 . TTG T 197 PASS INDEL;BAVGPOST=0.983;BRSQ=0.654;LDAF=0.0411;AVGPOST=0.9553;RSQ=0.5375;ERATE=0.0164;THETA=0.0055;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32818443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0073;AVGPOST=0.9979;RSQ=0.8936;ERATE=0.0004;THETA=0.0053;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32818489 . T TAC 43 PASS INDEL;BAVGPOST=0.995;BRSQ=0.444;LDAF=0.0279;AVGPOST=0.9744;RSQ=0.6476;ERATE=0.0013;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32818497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6150;AVGPOST=0.9964;RSQ=0.9944;ERATE=0.0009;THETA=0.0004;AC=1341;AN=2184 GT:DS:GL:BD 0.61401099 1 1 32818676 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5822;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32818766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0131;AVGPOST=0.9997;RSQ=0.9908;ERATE=0.0003;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32818877 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5484;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0005;THETA=0.0005;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 32818970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0004;THETA=0.0018;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32819019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7452;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32819107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32819111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32819259 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.855;LDAF=0.0113;AVGPOST=0.9981;RSQ=0.9331;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32819263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32819343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.9127;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32819418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.0787;AVGPOST=0.9970;RSQ=0.9863;ERATE=0.0003;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 32819499 . GGA G 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32819585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9022;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32819605 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6134;AVGPOST=0.9983;RSQ=0.9968;ERATE=0.0005;THETA=0.0005;AC=1340;AN=2184 GT:DS:GL:BD 0.61355311 1 1 32819614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.4888;ERATE=0.0011;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32819684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6789;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32819729 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8251;AVGPOST=0.9983;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 32819758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6991;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32820007 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5768;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0001;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32820042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32820057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0457;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0002;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32820100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0145;AVGPOST=0.9995;RSQ=0.9880;ERATE=0.0003;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32820126 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9988;RSQ=0.9360;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32820179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0202;AVGPOST=0.9988;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32820233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0528;AVGPOST=0.9994;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 32820395 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0458;AVGPOST=0.9996;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=100;AN=2184 GT:DS:GL:BD 0.04578755 0 1 32820463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32820572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8996;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32820599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32820733 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32820747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9838;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32820758 . TCAGA T 34 PASS INDEL;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4546;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32820840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9897;ERATE=0.0004;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32820861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.878;LDAF=0.0229;AVGPOST=0.9963;RSQ=0.9364;ERATE=0.0005;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32820897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0196;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32820951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0072;AVGPOST=0.9975;RSQ=0.8596;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32820989 . TTTG T 123 PASS INDEL;BAVGPOST=0.992;BRSQ=0.719;LDAF=0.0301;AVGPOST=0.9646;RSQ=0.5003;ERATE=0.0107;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32821003 . GT G 47 PASS INDEL;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7577;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6105;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821108 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0259;AVGPOST=0.9981;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32821115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6150;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0007;THETA=0.0004;AC=1342;AN=2184 GT:DS:GL:BD 0.61446887 1 1 32821117 . G GA 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821271 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32821380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0828;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 32821416 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9887;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32821630 . G GGGT 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4140;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0196;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32821818 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32821857 rs71564714 G GCTGTAAATATAGGTA 30371 PASS INDEL;BAVGPOST=0.980;BRSQ=0.805;LDAF=0.0564;AVGPOST=0.9781;RSQ=0.8426;ERATE=0.0008;THETA=0.0002;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 32822023 . G GGTACT 9085 PASS INDEL;BAVGPOST=0.980;BRSQ=0.796;LDAF=0.0548;AVGPOST=0.9783;RSQ=0.8426;ERATE=0.0003;THETA=0.0007;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 32822035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6474;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32822056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5107;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32822080 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9435;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32822096 . T TA 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32822110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8750;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32822163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7746;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32822269 . C CT 406 PASS INDEL;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8626;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32822300 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9728;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32822371 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9574;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32822508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9802;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32822541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32822582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9765;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32822645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32822646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9147;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32822666 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32822717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5112;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32822805 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9664;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32822838 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9395;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32823079 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5895;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32823081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6637;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32823091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7746;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32823224 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0061;AVGPOST=0.9987;RSQ=0.9217;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32823238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5918;AVGPOST=0.9986;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1293;AN=2184 GT:DS:GL:BD 0.59203297 1 1 32823241 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5332;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32823321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32823429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0770;AVGPOST=0.9993;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 32823596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32823688 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3745;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 32823715 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.7015;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32823769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0869;AVGPOST=0.9978;RSQ=0.9907;ERATE=0.0004;THETA=0.0005;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 32823806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.706;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32823855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32823935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8461;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32823949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32824010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32824082 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0655;AVGPOST=0.9983;RSQ=0.9883;ERATE=0.0004;THETA=0.0006;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 32824119 . TTACTGAACA T 1010 PASS INDEL;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0044;AVGPOST=0.9983;RSQ=0.8206;ERATE=0.0010;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32824143 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0773;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 32824171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.9965;AVGPOST=0.9992;RSQ=0.9028;ERATE=0.0004;THETA=0.0003;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 32824276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32824463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9981;RSQ=0.7313;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32824503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32824508 . CT C 8782 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0774;AVGPOST=0.9989;RSQ=0.9934;ERATE=0.0004;THETA=0.0009;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 32824564 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.9986;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 32824599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.977;LDAF=0.6034;AVGPOST=0.9830;RSQ=0.9786;ERATE=0.0004;THETA=0.0032;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 32824626 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.3266;AVGPOST=0.9821;RSQ=0.9732;ERATE=0.0003;THETA=0.0002;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 32824627 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.3273;AVGPOST=0.9804;RSQ=0.9701;ERATE=0.0005;THETA=0.0003;AC=717;AN=2184 GT:DS:GL:BD 0.32829669 0 1 32824628 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0348;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0009;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32824759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.7173;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32824855 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0083;AVGPOST=0.9958;RSQ=0.8099;ERATE=0.0009;THETA=0.0001;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32824957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4061;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32825001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5429;ERATE=0.0005;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32825028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6117;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32825029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.5252;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32825052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.924;LDAF=0.1516;AVGPOST=0.9731;RSQ=0.9311;ERATE=0.0076;THETA=0.0085;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 32825072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0194;AVGPOST=0.9986;RSQ=0.9733;ERATE=0.0004;THETA=0.0011;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32825105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7608;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32825192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7350;ERATE=0.0004;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32825249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0075;AVGPOST=0.9928;RSQ=0.6203;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32825484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.763;LDAF=0.0064;AVGPOST=0.9952;RSQ=0.7070;ERATE=0.0006;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32825515 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0042;AVGPOST=0.9957;RSQ=0.6091;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32825565 . C CAA 393 PASS INDEL;BAVGPOST=0.989;BRSQ=0.596;LDAF=0.0184;AVGPOST=0.9829;RSQ=0.6255;ERATE=0.0036;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32825592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8232;ERATE=0.0004;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32825609 . CGA C 1644 PASS INDEL;BAVGPOST=0.929;BRSQ=0.850;LDAF=0.2843;AVGPOST=0.9160;RSQ=0.8455;ERATE=0.0079;THETA=0.0002;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 32825655 rs71675847 GAGAA G 23559 PASS INDEL;BAVGPOST=0.952;BRSQ=0.907;LDAF=0.3262;AVGPOST=0.9708;RSQ=0.9521;ERATE=0.0013;THETA=0.0027;AC=722;AN=2184 GT:DS:GL:BD 0.33058608 0 1 32825656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2460;AVGPOST=0.9957;RSQ=0.9922;ERATE=0.0004;THETA=0.0003;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 32825685 . ATTAG A 49 PASS INDEL;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4389;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32825876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0004;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32826160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32826184 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32826273 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0086;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32826289 . CTAA C 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4659;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826341 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826347 . AT A 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5087;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826437 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32826604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32826693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8010;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32826771 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3553;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 32826789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32826795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32826860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7693;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32826945 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0525;AVGPOST=0.9992;RSQ=0.9933;ERATE=0.0003;THETA=0.0002;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32826962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0522;AVGPOST=0.9998;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32827073 . ACT A 342 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8695;ERATE=0.0005;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32827407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0266;AVGPOST=0.9989;RSQ=0.9828;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32827465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7085;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32827472 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0003;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32827550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5981;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32827610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32827617 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8345;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32827701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0070;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32827704 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0101;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0004;THETA=0.0017;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32827707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1948;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 32827820 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7975;ERATE=0.0003;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32827868 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1820;AVGPOST=0.9959;RSQ=0.9896;ERATE=0.0003;THETA=0.0002;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 32827899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7463;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32827910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0757;AVGPOST=0.9979;RSQ=0.9878;ERATE=0.0003;THETA=0.0002;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 32827968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5725;AVGPOST=0.9912;RSQ=0.9866;ERATE=0.0023;THETA=0.0006;AC=1254;AN=2184 GT:DS:GL:BD 0.57417583 1 1 32827999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0375;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32828038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0068;AVGPOST=0.9983;RSQ=0.9066;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32828164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9732;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32828173 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5791;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0006;THETA=0.0042;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 32828192 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32828196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1956;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0022;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 32828213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32828284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32828339 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32828586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0069;AVGPOST=0.9995;RSQ=0.9631;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32828720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.7917;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32828721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.9864;AVGPOST=0.9997;RSQ=0.9908;ERATE=0.0003;THETA=0.0004;AC=2154;AN=2184 GT:DS:GL:BD 0.98626375 1 1 32828908 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32828912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32828974 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9699;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32829009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32829040 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0003;AVGPOST=0.9998;RSQ=0.7498;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32829041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32829060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.5527;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32829166 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0215;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32829173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0133;AVGPOST=0.9988;RSQ=0.9667;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32829188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0049;AVGPOST=0.9995;RSQ=0.9675;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32829239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9470;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 32829272 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32829337 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8708;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32829340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32829384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32829494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0238;AVGPOST=0.9998;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32829517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9900;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32829553 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32829560 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32829585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9076;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32829586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8865;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32829597 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9995;RSQ=0.9834;ERATE=0.0004;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32829660 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7918;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32829733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9499;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32829766 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.482;LDAF=0.0184;AVGPOST=0.9755;RSQ=0.4931;ERATE=0.0071;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32829894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4821;AVGPOST=0.9968;RSQ=0.9948;ERATE=0.0004;THETA=0.0004;AC=1052;AN=2184 GT:DS:GL:BD 0.48168498 0 1 32829897 rs59298471 T TG 76 PASS INDEL;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0046;AVGPOST=0.9968;RSQ=0.7226;ERATE=0.0009;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32829934 . GGGGGGC G 1096 PASS INDEL;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0034;AVGPOST=0.9975;RSQ=0.6713;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32829936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.8101;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32829950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32830124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.502;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5240;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32830202 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0058;AVGPOST=0.9991;RSQ=0.9483;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32830235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7968;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32830281 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.948;LDAF=0.0523;AVGPOST=0.9940;RSQ=0.9582;ERATE=0.0003;THETA=0.0007;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 32830365 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5861;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32830447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7353;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32830689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9469;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 32830706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6626;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32830713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0948;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 32830739 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5942;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32830779 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0066;AVGPOST=0.9987;RSQ=0.9110;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32830838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32830892 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9466;AVGPOST=0.9991;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=2068;AN=2184 GT:DS:GL:BD 0.94688642 1 1 32830993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4837;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 32831058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.9863;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0003;THETA=0.0016;AC=2154;AN=2184 GT:DS:GL:BD 0.98626375 1 1 32831237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831259 . GT G 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5674;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32831288 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32831343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0377;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32831344 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8064;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32831378 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1177;AVGPOST=0.9990;RSQ=0.9959;ERATE=0.0005;THETA=0.0005;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 32831464 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32831512 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1957;AVGPOST=0.9980;RSQ=0.9951;ERATE=0.0005;THETA=0.0002;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 32831606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0057;AVGPOST=0.9978;RSQ=0.8499;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32831611 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831612 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9822;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32831708 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.9074;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32831717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9564;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32831795 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1967;AVGPOST=0.9976;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 32831828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0184;AVGPOST=0.9987;RSQ=0.9779;ERATE=0.0004;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32831884 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6384;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32831958 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8893;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32832160 . A AT 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32832328 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7531;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32832377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32832392 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5750;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32832534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7946;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32832551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8327;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32832640 . GCAAAA G 333 PASS INDEL;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8504;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32832693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6900;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=1507;AN=2184 GT:DS:GL:BD 0.69001830 1 1 32832716 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8769;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32832967 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9744;ERATE=0.0002;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32833013 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32833067 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32833318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6983;AVGPOST=0.9976;RSQ=0.9954;ERATE=0.0005;THETA=0.0006;AC=1524;AN=2184 GT:DS:GL:BD 0.69780219 1 1 32833363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32833479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32833486 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32833512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8508;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32833630 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1239;AVGPOST=0.9975;RSQ=0.9915;ERATE=0.0005;THETA=0.0007;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 32833732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32833879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.9953;AVGPOST=0.9989;RSQ=0.9120;ERATE=0.0003;THETA=0.0004;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 32833886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8482;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32833948 . G GA 615 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0061;AVGPOST=0.9973;RSQ=0.8069;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32833986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8299;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32834068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8593;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32834087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32834187 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8566;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32834246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32834256 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0119;AVGPOST=0.9991;RSQ=0.9675;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32834294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6828;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32834458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6965;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0004;THETA=0.0015;AC=1521;AN=2184 GT:DS:GL:BD 0.69642860 1 1 32834657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.685;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6953;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32834678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32834786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8684;AVGPOST=0.9950;RSQ=0.9849;ERATE=0.0005;THETA=0.0004;AC=1896;AN=2184 GT:DS:GL:BD 0.86813188 1 1 32834823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0035;AVGPOST=0.9958;RSQ=0.5632;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32834856 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0058;AVGPOST=0.9975;RSQ=0.8363;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32834925 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32834976 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32834993 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32835004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8654;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32835061 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9334;ERATE=0.0002;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32835062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.8918;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32835069 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9983;RSQ=0.8914;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32835075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32835212 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0002;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32835403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32835470 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32835549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32835624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32835640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32835648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32835781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32835820 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9898;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32835855 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7496;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32836079 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1263;AVGPOST=0.9972;RSQ=0.9893;ERATE=0.0004;THETA=0.0003;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 32836103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8965;ERATE=0.0002;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32836150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0249;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0002;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32836370 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7865;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32836416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32836420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9020;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32836541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5632;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32836617 rs5781380 A AT 97064 PASS INDEL;BAVGPOST=0.994;BRSQ=0.745;LDAF=0.9820;AVGPOST=0.9821;RSQ=0.6342;ERATE=0.0026;THETA=0.0002;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 32836691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32836850 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0121;AVGPOST=0.9979;RSQ=0.9258;ERATE=0.0006;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32836923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.495;LDAF=0.0055;AVGPOST=0.9945;RSQ=0.5954;ERATE=0.0013;THETA=0.0060;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32836928 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7795;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32837076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7376;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32837083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9900;ERATE=0.0003;THETA=0.0010;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32837279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0997;AVGPOST=0.9994;RSQ=0.9968;ERATE=0.0004;THETA=0.0005;AC=218;AN=2184 GT:DS:GL:BD 0.09981685 0 1 32837286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1008;AVGPOST=0.9989;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 32837329 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.876;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7640;ERATE=0.0008;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32837473 . CA C 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32837476 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0065;AVGPOST=0.9983;RSQ=0.8973;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32837507 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.863;LDAF=0.0962;AVGPOST=0.9883;RSQ=0.9495;ERATE=0.0006;THETA=0.0003;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 32837553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.786;LDAF=0.1653;AVGPOST=0.9755;RSQ=0.9328;ERATE=0.0013;THETA=0.0003;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 32837555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0046;AVGPOST=0.9946;RSQ=0.4730;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32837615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.927;LDAF=0.0642;AVGPOST=0.9847;RSQ=0.8968;ERATE=0.0016;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 32837640 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.780;BRSQ=0.617;LDAF=0.3863;AVGPOST=0.8658;RSQ=0.8099;ERATE=0.0069;THETA=0.0006;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 32837673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.492;LDAF=0.0117;AVGPOST=0.9906;RSQ=0.7188;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32837734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8971;AVGPOST=0.9941;RSQ=0.9772;ERATE=0.0009;THETA=0.0002;AC=1960;AN=2184 GT:DS:GL:BD 0.89743590 1 1 32837782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0996;AVGPOST=0.9985;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32837846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0992;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32837925 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32837950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0993;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32838000 . C CAGT 880 PASS INDEL;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0074;AVGPOST=0.9964;RSQ=0.8258;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32838086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6717;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32838099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32838103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0001;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32838165 rs71170102 TATGA T 21885 PASS INDEL;BAVGPOST=0.988;BRSQ=0.964;LDAF=0.1874;AVGPOST=0.9910;RSQ=0.9779;ERATE=0.0005;THETA=0.0001;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 32838188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0997;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0004;THETA=0.0005;AC=217;AN=2184 GT:DS:GL:BD 0.09935898 0 1 32838200 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.967;LDAF=0.1904;AVGPOST=0.9967;RSQ=0.9917;ERATE=0.0003;THETA=0.0003;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 32838207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6744;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32838289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5730;ERATE=0.0003;THETA=0.0056;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32838382 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9164;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32838432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9352;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32838433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0818;AVGPOST=0.9964;RSQ=0.9807;ERATE=0.0004;THETA=0.0006;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 32838454 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9827;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32838630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6088;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32838706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9995;RSQ=0.9765;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32838797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0991;AVGPOST=0.9990;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 32838800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32838884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.979;LDAF=0.8823;AVGPOST=0.9947;RSQ=0.9817;ERATE=0.0004;THETA=0.0002;AC=1926;AN=2184 GT:DS:GL:BD 0.88186812 1 1 32838985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3682;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 32839081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32839085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5111;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32839186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32839318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7543;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32839398 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.2246;AVGPOST=0.9975;RSQ=0.9944;ERATE=0.0005;THETA=0.0006;AC=490;AN=2184 GT:DS:GL:BD 0.22435898 0 1 32839479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0082;AVGPOST=0.9983;RSQ=0.9218;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32839481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.8995;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32839568 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0169;AVGPOST=0.9989;RSQ=0.9714;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32839717 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4199;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32839726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32839990 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8567;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32840111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1107;AVGPOST=0.9982;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 32840259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32840450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32840850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.589;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7247;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32840855 . ATGC A 646 PASS INDEL;BAVGPOST=0.997;BRSQ=0.648;LDAF=0.0059;AVGPOST=0.9933;RSQ=0.5785;ERATE=0.0005;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32840913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0028;AVGPOST=0.9974;RSQ=0.5829;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32840926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.1196;AVGPOST=0.9968;RSQ=0.9871;ERATE=0.0010;THETA=0.0006;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32840991 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.903;LDAF=0.4515;AVGPOST=0.9263;RSQ=0.8985;ERATE=0.0173;THETA=0.0003;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 32841054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.682;LDAF=0.0019;AVGPOST=0.9969;RSQ=0.3593;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32841278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.962;LDAF=0.3667;AVGPOST=0.9880;RSQ=0.9797;ERATE=0.0010;THETA=0.0002;AC=802;AN=2184 GT:DS:GL:BD 0.36721611 0 1 32841349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.767;LDAF=0.0143;AVGPOST=0.9918;RSQ=0.7617;ERATE=0.0014;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32841365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.541;LDAF=0.0102;AVGPOST=0.9856;RSQ=0.4502;ERATE=0.0015;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32841403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.741;LDAF=0.0190;AVGPOST=0.9928;RSQ=0.8534;ERATE=0.0012;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32841476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.664;LDAF=0.0495;AVGPOST=0.9838;RSQ=0.8876;ERATE=0.0006;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32841612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0138;AVGPOST=0.9981;RSQ=0.9339;ERATE=0.0005;THETA=0.0013;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32841613 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0286;AVGPOST=0.9977;RSQ=0.9679;ERATE=0.0004;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32841624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.965;LDAF=0.4871;AVGPOST=0.9893;RSQ=0.9837;ERATE=0.0016;THETA=0.0004;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 32841644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.505;LDAF=0.0079;AVGPOST=0.9928;RSQ=0.6300;ERATE=0.0008;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32841671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.945;LDAF=0.3828;AVGPOST=0.9903;RSQ=0.9829;ERATE=0.0013;THETA=0.0002;AC=839;AN=2184 GT:DS:GL:BD 0.38415751 0 1 32841796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.917;LDAF=0.1975;AVGPOST=0.9878;RSQ=0.9734;ERATE=0.0007;THETA=0.0002;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 32841800 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0131;AVGPOST=0.9956;RSQ=0.8674;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32841905 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.932;LDAF=0.1850;AVGPOST=0.9844;RSQ=0.9610;ERATE=0.0006;THETA=0.0002;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 32841934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.450;LDAF=0.0107;AVGPOST=0.9874;RSQ=0.5198;ERATE=0.0018;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32841944 rs57379347 AAGGG A 6034 PASS INDEL;BAVGPOST=0.724;BRSQ=0.460;LDAF=0.6254;AVGPOST=0.8074;RSQ=0.6867;ERATE=0.0136;THETA=0.0005;AC=1365;AN=2184 GT:DS:GL:BD 0.62500000 1 1 32841961 rs57379347 AG A 1220 PASS INDEL;BAVGPOST=0.792;BRSQ=0.395;LDAF=0.2596;AVGPOST=0.7392;RSQ=0.4306;ERATE=0.0253;THETA=0.0019;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 32841962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.801;BRSQ=0.638;LDAF=0.5507;AVGPOST=0.7316;RSQ=0.5439;ERATE=0.0606;THETA=0.0003;AC=1225;AN=2184 GT:DS:GL:BD 0.56089741 1 1 32841965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5698;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32842012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.6073;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32842183 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32842319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32842324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32842450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9171;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32842674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0058;AVGPOST=0.9957;RSQ=0.6840;ERATE=0.0010;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32842693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.851;LDAF=0.0399;AVGPOST=0.9963;RSQ=0.9610;ERATE=0.0005;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32842800 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0031;AVGPOST=0.9956;RSQ=0.4998;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32843015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.849;LDAF=0.0181;AVGPOST=0.9968;RSQ=0.9288;ERATE=0.0007;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32843156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.795;LDAF=0.0216;AVGPOST=0.9933;RSQ=0.8875;ERATE=0.0003;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32843264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.772;LDAF=0.0064;AVGPOST=0.9962;RSQ=0.7686;ERATE=0.0007;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32843370 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0037;AVGPOST=0.9985;RSQ=0.8439;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32843415 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5724;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32843437 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.597;LDAF=0.0129;AVGPOST=0.9888;RSQ=0.6593;ERATE=0.0028;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32843488 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.945;LDAF=0.1443;AVGPOST=0.9907;RSQ=0.9722;ERATE=0.0005;THETA=0.0008;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 32843530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0243;AVGPOST=0.9960;RSQ=0.9452;ERATE=0.0003;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32843610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32843679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32843874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7580;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32843933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0188;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32844058 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4061;AVGPOST=0.9978;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 32844062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32844115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0398;AVGPOST=0.9984;RSQ=0.9855;ERATE=0.0003;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32844124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32844148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6134;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32844166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0138;AVGPOST=0.9996;RSQ=0.9872;ERATE=0.0002;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32844192 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7899;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32844204 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.577;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6133;ERATE=0.0002;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32844207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0213;AVGPOST=0.9993;RSQ=0.9868;ERATE=0.0003;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32844745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6635;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32844841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4347;ERATE=0.0008;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32844909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1327;AVGPOST=0.9984;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 32844963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32845064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4579;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32845262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32845377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32845504 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0939;AVGPOST=0.9979;RSQ=0.9908;ERATE=0.0002;THETA=0.0003;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 32845530 . AG A 8892 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0952;AVGPOST=0.9957;RSQ=0.9831;ERATE=0.0004;THETA=0.0003;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 32845531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32845592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6217;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32845642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0383;AVGPOST=0.9994;RSQ=0.9938;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32845826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9735;ERATE=0.0002;THETA=0.0001;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32845856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32845877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6759;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32846002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0179;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0002;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32846048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8266;ERATE=0.0002;THETA=0.0034;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32846151 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9997;RSQ=0.9946;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32846187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0166;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32846268 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0388;AVGPOST=0.9991;RSQ=0.9907;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 32846292 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32846341 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7956;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32846477 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5018;AVGPOST=0.9985;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1097;AN=2184 GT:DS:GL:BD 0.50228935 1 1 32846629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9002;ERATE=0.0002;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32846824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6316;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32846862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6809;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32847062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4454;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32847086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.836;LDAF=0.0134;AVGPOST=0.9960;RSQ=0.8893;ERATE=0.0004;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32847168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9987;RSQ=0.9751;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32847259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.931;LDAF=0.0155;AVGPOST=0.9990;RSQ=0.9755;ERATE=0.0002;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32847433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9561;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32847442 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0142;AVGPOST=0.9987;RSQ=0.9651;ERATE=0.0003;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32847459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0020;AVGPOST=0.9983;RSQ=0.7050;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32847633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8724;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32847657 . CTCCT C 59 PASS INDEL;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0051;AVGPOST=0.9947;RSQ=0.6072;ERATE=0.0008;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32847683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0102;AVGPOST=0.9986;RSQ=0.9485;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32847710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0102;AVGPOST=0.9987;RSQ=0.9526;ERATE=0.0002;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32847711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.454;LDAF=0.0033;AVGPOST=0.9957;RSQ=0.4224;ERATE=0.0010;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32847844 . CAG C 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32847866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5701;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32847915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0047;AVGPOST=0.9986;RSQ=0.8731;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32848071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6858;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32848259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32848321 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0323;AVGPOST=0.9964;RSQ=0.9698;ERATE=0.0002;THETA=0.0002;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32848382 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0239;AVGPOST=0.9990;RSQ=0.9820;ERATE=0.0004;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32848447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.2745;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32848449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0241;AVGPOST=0.9992;RSQ=0.9850;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32848467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0067;AVGPOST=0.9991;RSQ=0.9377;ERATE=0.0002;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32848476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7350;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32848511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8193;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32848541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3054;AVGPOST=0.9973;RSQ=0.9952;ERATE=0.0002;THETA=0.0009;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 32848633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8396;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32848638 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0697;AVGPOST=0.9984;RSQ=0.9899;ERATE=0.0003;THETA=0.0013;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 32848668 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3078;AVGPOST=0.9891;RSQ=0.9833;ERATE=0.0003;THETA=0.0044;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 32848861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32848865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6586;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32848887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7638;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32848888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6584;ERATE=0.0004;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32849021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32849129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5004;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32849187 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32849188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.9981;AVGPOST=0.9989;RSQ=0.8131;ERATE=0.0003;THETA=0.0015;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 32849340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7716;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32849399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6517;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32849401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0035;AVGPOST=0.9960;RSQ=0.5283;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32849456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.970;LDAF=0.6676;AVGPOST=0.9632;RSQ=0.9430;ERATE=0.0013;THETA=0.0028;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 32849471 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0064;AVGPOST=0.9971;RSQ=0.8200;ERATE=0.0003;THETA=0.0042;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32849494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1583;AVGPOST=0.9900;RSQ=0.9715;ERATE=0.0003;THETA=0.0269;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 32849550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4067;ERATE=0.0003;THETA=0.0188;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32849562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.888;LDAF=0.0058;AVGPOST=0.9979;RSQ=0.8530;ERATE=0.0003;THETA=0.0087;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32849587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7920;ERATE=0.0003;THETA=0.0146;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32849631 . CTCTTT C 200 PASS INDEL;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0047;AVGPOST=0.9955;RSQ=0.6579;ERATE=0.0004;THETA=0.0192;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32849824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4373;ERATE=0.0003;THETA=0.0176;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32850053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.723;LDAF=0.0039;AVGPOST=0.9973;RSQ=0.6980;ERATE=0.0005;THETA=0.0169;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32850172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.731;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7631;ERATE=0.0004;THETA=0.0041;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32850184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4506;ERATE=0.0005;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32850323 . A AGT 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.534;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3624;ERATE=0.0004;THETA=0.0096;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32850467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4920;ERATE=0.0004;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32850474 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.823;LDAF=0.0101;AVGPOST=0.9957;RSQ=0.8207;ERATE=0.0008;THETA=0.0209;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32850661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8836;ERATE=0.0003;THETA=0.0141;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32850719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.846;LDAF=0.5276;AVGPOST=0.8882;RSQ=0.8508;ERATE=0.0210;THETA=0.0092;AC=1150;AN=2184 GT:DS:GL:BD 0.52655679 1 1 32850776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0062;AVGPOST=0.9966;RSQ=0.7964;ERATE=0.0003;THETA=0.0157;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32850783 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0105;AVGPOST=0.9964;RSQ=0.8521;ERATE=0.0003;THETA=0.0097;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32850822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0039;AVGPOST=0.9944;RSQ=0.4040;ERATE=0.0010;THETA=0.0166;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32850856 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.863;LDAF=0.1763;AVGPOST=0.9398;RSQ=0.8497;ERATE=0.0087;THETA=0.0090;AC=355;AN=2184 GT:DS:GL:BD 0.16254579 0 1 32850903 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.697;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.6724;ERATE=0.0008;THETA=0.0060;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32850953 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0191;AVGPOST=0.9973;RSQ=0.9458;ERATE=0.0006;THETA=0.0152;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32851135 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.882;LDAF=0.5549;AVGPOST=0.9186;RSQ=0.8784;ERATE=0.0203;THETA=0.0047;AC=1216;AN=2184 GT:DS:GL:BD 0.55677658 1 1 32851170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.903;LDAF=0.0795;AVGPOST=0.9906;RSQ=0.9520;ERATE=0.0004;THETA=0.0048;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 32851244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6925;ERATE=0.0003;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851262 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5790;ERATE=0.0005;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32851271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32851273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0204;AVGPOST=0.9984;RSQ=0.9717;ERATE=0.0003;THETA=0.0013;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32851408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0840;AVGPOST=0.9979;RSQ=0.9882;ERATE=0.0004;THETA=0.0021;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 32851414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32851492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.950;LDAF=0.5851;AVGPOST=0.9671;RSQ=0.9491;ERATE=0.0042;THETA=0.0011;AC=1282;AN=2184 GT:DS:GL:BD 0.58699632 1 1 32851523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7548;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4659;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32851683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8564;ERATE=0.0002;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851741 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851750 . CAA C 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32851881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.950;LDAF=0.9146;AVGPOST=0.9910;RSQ=0.9551;ERATE=0.0004;THETA=0.0008;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 32851882 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7915;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32851928 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9497;ERATE=0.0003;THETA=0.0027;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32851941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0868;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0002;THETA=0.0007;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 32851999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0860;AVGPOST=0.9994;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 32852082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7655;ERATE=0.0002;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32852107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.2726;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 32852117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32852134 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8104;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32852223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6134;ERATE=0.0018;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32852240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0191;AVGPOST=0.9992;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32852272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32852308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0101;AVGPOST=0.9988;RSQ=0.9511;ERATE=0.0004;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32852420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32852436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0083;AVGPOST=0.9987;RSQ=0.9334;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32852437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7993;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32852439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9890;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32852492 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8309;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32852589 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0330;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32852628 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.1847;AVGPOST=0.9972;RSQ=0.9932;ERATE=0.0008;THETA=0.0003;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 32852755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32852767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9516;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32852856 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9375;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32852877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5361;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32853052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8950;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32853077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1845;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 32853185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9998;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32853209 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8531;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7251;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853341 . T TA 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.3793;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32853421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9691;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32853423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8852;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32853455 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9908;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32853471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7011;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32853566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5545;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853652 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0045;AVGPOST=0.9992;RSQ=0.9188;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32853668 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0105;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32853740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6269;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32853836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32853860 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853882 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32853942 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8198;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32853961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32854005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0348;AVGPOST=0.9994;RSQ=0.9927;ERATE=0.0004;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32854031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3567;AVGPOST=0.9942;RSQ=0.9908;ERATE=0.0011;THETA=0.0003;AC=779;AN=2184 GT:DS:GL:BD 0.35668498 0 1 32854098 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9980;RSQ=0.8716;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32854099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7640;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32854138 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0202;AVGPOST=0.9972;RSQ=0.9577;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32854150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0122;AVGPOST=0.9976;RSQ=0.9483;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32854187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0036;AVGPOST=0.9974;RSQ=0.7064;ERATE=0.0006;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32854202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32854345 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32854355 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7105;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32854405 . CAG C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32854464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.942;LDAF=0.0173;AVGPOST=0.9984;RSQ=0.9653;ERATE=0.0003;THETA=0.0019;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32854520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6707;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32854562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6856;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32854600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32854662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6012;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32854713 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5748;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=1255;AN=2184 GT:DS:GL:BD 0.57463372 1 1 32854717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32854720 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.5402;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0004;THETA=0.0005;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 32854773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32854779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32855050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.910;LDAF=0.0148;AVGPOST=0.9948;RSQ=0.8693;ERATE=0.0007;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32855085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6185;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32855087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32855152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32855158 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9406;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32855221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32855236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5408;AVGPOST=0.9980;RSQ=0.9971;ERATE=0.0003;THETA=0.0030;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 32855244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5319;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32855328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0037;AVGPOST=0.9961;RSQ=0.5805;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32855375 rs67273483 AAT A 14978 PASS INDEL;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1259;AVGPOST=0.9948;RSQ=0.9801;ERATE=0.0008;THETA=0.0003;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32855596 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.717;LDAF=0.0097;AVGPOST=0.9912;RSQ=0.6511;ERATE=0.0019;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32855753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0101;AVGPOST=0.9950;RSQ=0.8126;ERATE=0.0014;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32855775 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32855789 . G GTGTGTGTA 137986 PASS INDEL;BAVGPOST=0.967;BRSQ=0.945;LDAF=0.5485;AVGPOST=0.9646;RSQ=0.9471;ERATE=0.0073;THETA=0.0003;AC=1205;AN=2184 GT:DS:GL:BD 0.55173993 1 1 32855848 . G GTGTGTA 87030 PASS INDEL;BAVGPOST=0.950;BRSQ=0.911;LDAF=0.5189;AVGPOST=0.9113;RSQ=0.8686;ERATE=0.0366;THETA=0.0004;AC=1137;AN=2184 GT:DS:GL:BD 0.52060437 1 1 32855850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.3452;AVGPOST=0.9822;RSQ=0.9734;ERATE=0.0085;THETA=0.0006;AC=757;AN=2184 GT:DS:GL:BD 0.34661171 0 1 32855882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32855943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9825;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32855971 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5750;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=1255;AN=2184 GT:DS:GL:BD 0.57463372 1 1 32855984 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32856073 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8112;ERATE=0.0012;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32856159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6837;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32856220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32856223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9617;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32856262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5627;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32856273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3562;AVGPOST=0.9937;RSQ=0.9902;ERATE=0.0013;THETA=0.0011;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 32856296 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.6441;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32856465 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4680;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5402;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7294;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32856767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3186;AVGPOST=0.9981;RSQ=0.9966;ERATE=0.0004;THETA=0.0007;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 32856773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8252;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32856807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856820 . A AG 388 PASS INDEL;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0041;AVGPOST=0.9974;RSQ=0.7490;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32856832 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32856856 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8071;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32857061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32857163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9460;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32857166 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.492;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32857177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32857181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5465;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32857231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8931;AVGPOST=0.9972;RSQ=0.9884;ERATE=0.0004;THETA=0.0007;AC=1951;AN=2184 GT:DS:GL:BD 0.89331502 1 1 32857245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8297;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32857252 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6948;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32857353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6860;ERATE=0.0009;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32857406 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32857463 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7227;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32857568 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.893;LDAF=0.9414;AVGPOST=0.9825;RSQ=0.8911;ERATE=0.0005;THETA=0.0002;AC=2061;AN=2184 GT:DS:GL:BD 0.94368130 1 1 32857723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32857758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32857819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9502;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32857930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9313;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32858004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1406;AVGPOST=0.9976;RSQ=0.9928;ERATE=0.0006;THETA=0.0002;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 32858007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0022;AVGPOST=0.9987;RSQ=0.8007;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32858294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8119;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32858368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1296;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0001;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 32858420 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7498;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32858490 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7195;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32858496 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32858588 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1200;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 32858662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32858678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0087;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32858698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32858699 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9427;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32858765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1927;AVGPOST=0.9973;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 32858919 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3629;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32859030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9298;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32859069 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1939;AVGPOST=0.9980;RSQ=0.9949;ERATE=0.0007;THETA=0.0002;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 32859073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4263;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0006;THETA=0.0002;AC=930;AN=2184 GT:DS:GL:BD 0.42582417 0 1 32859148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5722;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32859201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9726;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32859224 . G GT 450 PASS INDEL;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0042;AVGPOST=0.9963;RSQ=0.6205;ERATE=0.0008;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32859283 rs71973842 AGCCCTTGGAT A 18195 PASS INDEL;BAVGPOST=0.945;BRSQ=0.878;LDAF=0.2690;AVGPOST=0.9588;RSQ=0.9192;ERATE=0.0038;THETA=0.0002;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 32859368 . T TTG 82 PASS INDEL;BAVGPOST=0.962;BRSQ=0.416;LDAF=0.0486;AVGPOST=0.9377;RSQ=0.4728;ERATE=0.0065;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32859383 . A ATCC 7869 PASS INDEL;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1302;AVGPOST=0.9981;RSQ=0.9940;ERATE=0.0004;THETA=0.0006;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 32859387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6362;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32859423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2984;AVGPOST=0.9913;RSQ=0.9855;ERATE=0.0011;THETA=0.0003;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 32859443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.853;LDAF=0.0274;AVGPOST=0.9932;RSQ=0.9003;ERATE=0.0006;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32859572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5993;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32859592 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0126;AVGPOST=0.9977;RSQ=0.9156;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32859605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7121;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32859684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8481;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32859734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9987;RSQ=0.8751;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32859845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860000 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6870;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32860016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0004;AVGPOST=0.9991;RSQ=0.2915;ERATE=0.0003;THETA=0.0001;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32860071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0322;AVGPOST=0.9985;RSQ=0.9876;ERATE=0.0003;THETA=0.0004;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32860315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0097;AVGPOST=0.9989;RSQ=0.9480;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32860410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4848;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860439 . CCT C 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4209;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860445 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.914;LDAF=0.0070;AVGPOST=0.9981;RSQ=0.9062;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32860451 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860593 . CG C 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4845;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1291;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 32860764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5665;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0682;AVGPOST=0.9982;RSQ=0.9883;ERATE=0.0003;THETA=0.0002;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 32860863 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32860946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5256;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32861079 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32861166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1293;AVGPOST=0.9980;RSQ=0.9931;ERATE=0.0004;THETA=0.0002;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 32861207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1204;AVGPOST=0.9982;RSQ=0.9941;ERATE=0.0004;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 32861211 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32861337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5764;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32861341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9096;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32861424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6773;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32861439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8435;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32861463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6441;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32861589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7305;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9099;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32861626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1201;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 32861726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7028;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6137;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32861963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9629;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32861993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32862196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0027;AVGPOST=0.9994;RSQ=0.9041;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32862238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7624;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32862294 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32862455 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8726;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32862564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7808;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32862692 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5612;AVGPOST=0.9956;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=1227;AN=2184 GT:DS:GL:BD 0.56181318 1 1 32862713 . CA C 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4941;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32862796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32862847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32862955 . T TG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32862992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0317;AVGPOST=0.9986;RSQ=0.9797;ERATE=0.0003;THETA=0.0002;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 32863062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3544;AVGPOST=0.9950;RSQ=0.9921;ERATE=0.0004;THETA=0.0005;AC=772;AN=2184 GT:DS:GL:BD 0.35347986 0 1 32863075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8673;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32863076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32863083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32863102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7171;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32863106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0093;AVGPOST=0.9987;RSQ=0.9369;ERATE=0.0004;THETA=0.0017;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32863146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8565;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32863151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32863183 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32863228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6578;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32863313 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1636;AVGPOST=0.9967;RSQ=0.9915;ERATE=0.0005;THETA=0.0004;AC=357;AN=2184 GT:DS:GL:BD 0.16346154 0 1 32863429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6873;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32863465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5369;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32863476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.7017;ERATE=0.0004;THETA=0.0026;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32863478 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8231;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32863565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5734;ERATE=0.0015;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32863761 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1431;AVGPOST=0.9969;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 32863767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32863831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0216;AVGPOST=0.9982;RSQ=0.9665;ERATE=0.0004;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32863909 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8611;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32864023 . CA C 1152 PASS INDEL;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0070;AVGPOST=0.9979;RSQ=0.8892;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32864048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32864087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7698;ERATE=0.0014;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32864127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0309;AVGPOST=0.9953;RSQ=0.9431;ERATE=0.0004;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32864172 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32864338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0119;AVGPOST=0.9995;RSQ=0.9827;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32864427 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9451;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32864528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32864535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32864668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0410;AVGPOST=0.9980;RSQ=0.9833;ERATE=0.0004;THETA=0.0007;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32864758 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.544;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.3308;ERATE=0.0004;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32864957 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8703;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32864964 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32864985 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1448;AVGPOST=0.9951;RSQ=0.9865;ERATE=0.0004;THETA=0.0005;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 32865028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6668;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32865070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32865117 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32865249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32865251 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8183;ERATE=0.0016;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32865309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32865338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32865472 . GGTTTTTTTGTTTGTTT G 40942 PASS INDEL;BAVGPOST=0.978;BRSQ=0.961;LDAF=0.3231;AVGPOST=0.9720;RSQ=0.9539;ERATE=0.0049;THETA=0.0005;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 32865552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32865599 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6022;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32865718 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8693;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32865738 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.683;LDAF=0.0220;AVGPOST=0.9760;RSQ=0.5876;ERATE=0.0090;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32865789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7038;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32865805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7343;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32865975 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32865976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8020;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32865980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1543;AVGPOST=0.9961;RSQ=0.9890;ERATE=0.0004;THETA=0.0005;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 32866025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.979;LDAF=0.3289;AVGPOST=0.9877;RSQ=0.9798;ERATE=0.0005;THETA=0.0006;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 32866033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.943;LDAF=0.0561;AVGPOST=0.9927;RSQ=0.9449;ERATE=0.0012;THETA=0.0011;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32866037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5840;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32866060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0223;AVGPOST=0.9983;RSQ=0.9743;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32866064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866086 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.739;LDAF=0.0078;AVGPOST=0.9953;RSQ=0.7681;ERATE=0.0008;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32866298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7916;ERATE=0.0004;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32866458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0043;AVGPOST=0.9983;RSQ=0.8465;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32866515 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8827;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32866564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866582 . A AG 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32866638 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8946;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32866769 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7398;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32866791 . T TA 558 PASS INDEL;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.8735;ERATE=0.0003;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32866824 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.2046;AVGPOST=0.9961;RSQ=0.9915;ERATE=0.0011;THETA=0.0006;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 32867041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7610;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32867073 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.8081;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32867092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4808;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32867167 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32867254 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32867398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0213;AVGPOST=0.9994;RSQ=0.9899;ERATE=0.0003;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32867449 . CTAT C 789 PASS INDEL;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0071;AVGPOST=0.9973;RSQ=0.8463;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32867689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0037;AVGPOST=0.9988;RSQ=0.8691;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32867726 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0335;AVGPOST=0.9977;RSQ=0.9780;ERATE=0.0004;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32867748 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0182;AVGPOST=0.9984;RSQ=0.9647;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32867762 . C CA 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.4828;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32867776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32867778 . AG A 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5595;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32867797 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0378;AVGPOST=0.9992;RSQ=0.9921;ERATE=0.0003;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 32867841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32867864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7521;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32867875 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32867937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0003;THETA=0.0031;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32868064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0918;AVGPOST=0.9985;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 32868180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0181;AVGPOST=0.9988;RSQ=0.9727;ERATE=0.0004;THETA=0.0018;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32868528 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=0.9997;RSQ=0.9790;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32868608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7054;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32868638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7996;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32868887 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.927;LDAF=0.0237;AVGPOST=0.9970;RSQ=0.9563;ERATE=0.0004;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32868961 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.927;LDAF=0.0230;AVGPOST=0.9964;RSQ=0.9459;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32868962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32869005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.6154;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32869180 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0620;AVGPOST=0.9991;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 32869196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8946;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32869204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.6018;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32869221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32869327 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0217;AVGPOST=0.9996;RSQ=0.9937;ERATE=0.0003;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32869404 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0315;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0003;THETA=0.0008;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 32869523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7106;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32869537 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.841;LDAF=0.0117;AVGPOST=0.9978;RSQ=0.9151;ERATE=0.0003;THETA=0.0019;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32869583 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1955;AVGPOST=0.9976;RSQ=0.9951;ERATE=0.0005;THETA=0.0004;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 32869607 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1941;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0004;THETA=0.0004;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 32869651 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6434;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32869791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32869816 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32869840 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2783;AVGPOST=0.9900;RSQ=0.9819;ERATE=0.0004;THETA=0.0012;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 32869911 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8234;ERATE=0.0007;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32870045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1144;AVGPOST=0.9938;RSQ=0.9798;ERATE=0.0035;THETA=0.0006;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 32870333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32870335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32870368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9853;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32870488 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32870495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32870529 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0093;AVGPOST=0.9973;RSQ=0.8813;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32870652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9996;RSQ=0.9899;ERATE=0.0003;THETA=0.0012;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32870665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32870761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2217;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=486;AN=2184 GT:DS:GL:BD 0.22252747 0 1 32870811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32870824 . TAAATC T 2136 PASS INDEL;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0129;AVGPOST=0.9993;RSQ=0.9751;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32870870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7539;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32870886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0168;AVGPOST=0.9995;RSQ=0.9876;ERATE=0.0003;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32870894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7338;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32870897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7931;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32870906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32870932 rs111590040 C CA 5112 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0009;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 32870971 . AT A 128 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8348;ERATE=0.0005;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32871163 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7107;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32871168 rs58221307 A AAATCT 3172 PASS INDEL;BAVGPOST=0.996;BRSQ=0.903;LDAF=0.0138;AVGPOST=0.9979;RSQ=0.9486;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32871172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9805;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32871243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32871264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32871275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0166;AVGPOST=0.9991;RSQ=0.9794;ERATE=0.0003;THETA=0.0030;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32871500 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9531;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32871622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8401;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32871654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6004;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32871666 . TC T 184 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8450;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32871697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9740;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32871773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9092;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32871813 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7053;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32871864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32871921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0450;AVGPOST=0.9993;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32871930 . A AT 224 PASS INDEL;BAVGPOST=0.965;BRSQ=0.489;LDAF=0.0598;AVGPOST=0.9258;RSQ=0.4462;ERATE=0.0145;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32872004 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0181;AVGPOST=0.9982;RSQ=0.9609;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32872010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0889;AVGPOST=0.9977;RSQ=0.9898;ERATE=0.0004;THETA=0.0006;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 32872018 . TCG T 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872080 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9545;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32872081 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.426;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3913;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9382;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32872281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8253;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32872407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4944;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7775;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32872659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6584;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0004;THETA=0.0005;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 32872684 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32872734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872810 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872820 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6582;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0002;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 32872838 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9533;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32872942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6997;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32872950 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9781;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32873067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9758;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32873147 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.419;LDAF=0.0039;AVGPOST=0.9947;RSQ=0.4719;ERATE=0.0010;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32873174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.732;LDAF=0.0059;AVGPOST=0.9954;RSQ=0.6601;ERATE=0.0006;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32873191 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.952;LDAF=0.6392;AVGPOST=0.9579;RSQ=0.9319;ERATE=0.0082;THETA=0.0004;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 32873264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.544;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32873318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2418;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 32873451 MERGED_DEL_2_7719 CTGTAATGCATATGTTGGAGACTCTAAAGTCTTTATCTTCAGCCCTAACTTTTTCCTGAATTTCGATTTAAATCCAGTTGGGTGCCCTTCTGCCCATAGGCCCTCAGCATGTTCAAATGTGAACTCTCTGTCTTCTCTCTTACTGCAATTCCTTCCATTGTGCCTTTTGTATTTTGATCTCAGCCGATGA C . . SV;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;CIEND=-30;25;CIPOS=-18;29;END=233446053;HOMLEN=4;HOMSEQ=TGTA;SOURCE=EMBLdelly_233434712_233446054 GT:DS:GL:BD 0.00045788 0 1 32873487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32873560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32873610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6592;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=1440;AN=2184 GT:DS:GL:BD 0.65934068 1 1 32873624 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6592;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=1440;AN=2184 GT:DS:GL:BD 0.65934068 1 1 32873640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8840;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32873679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32873740 . T TTC 52141 PASS INDEL;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.6769;AVGPOST=0.9944;RSQ=0.9892;ERATE=0.0011;THETA=0.0002;AC=1479;AN=2184 GT:DS:GL:BD 0.67719781 1 1 32873861 rs60922376 C CTT 118525 PASS INDEL;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.6798;AVGPOST=0.9931;RSQ=0.9870;ERATE=0.0007;THETA=0.0003;AC=1484;AN=2184 GT:DS:GL:BD 0.67948717 1 1 32873867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5084;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32873921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9580;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32874106 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.909;LDAF=0.0440;AVGPOST=0.9941;RSQ=0.9504;ERATE=0.0003;THETA=0.0007;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 32874276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2617;AVGPOST=0.9992;RSQ=0.9981;ERATE=0.0004;THETA=0.0003;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 32874343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32874393 rs34472142 GA G 7515 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0498;AVGPOST=0.9983;RSQ=0.9847;ERATE=0.0005;THETA=0.0009;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32874516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7372;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32874566 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.940;LDAF=0.0433;AVGPOST=0.9932;RSQ=0.9384;ERATE=0.0006;THETA=0.0003;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 32874658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9582;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32874688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6582;AVGPOST=0.9974;RSQ=0.9952;ERATE=0.0008;THETA=0.0005;AC=1440;AN=2184 GT:DS:GL:BD 0.65934068 1 1 32874721 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32874760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32874769 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8262;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32874828 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6571;AVGPOST=0.9992;RSQ=0.9984;ERATE=0.0006;THETA=0.0003;AC=1436;AN=2184 GT:DS:GL:BD 0.65750915 1 1 32874892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5489;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32874987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2399;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 32875154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6376;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=1393;AN=2184 GT:DS:GL:BD 0.63782054 1 1 32875178 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9839;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32875264 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9742;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32875359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32875389 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32875518 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6561;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 32875571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32875663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32875860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4853;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32875875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0050;AVGPOST=0.9994;RSQ=0.9504;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32875896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0161;AVGPOST=0.9984;RSQ=0.9690;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32876002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7309;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32876074 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6762;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32876294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9550;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32876296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4590;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32876351 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8315;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32876399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.671;LDAF=0.0061;AVGPOST=0.9949;RSQ=0.6742;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32876416 rs10712498 AT A 11046 PASS INDEL;BAVGPOST=0.988;BRSQ=0.972;LDAF=0.2394;AVGPOST=0.9802;RSQ=0.9600;ERATE=0.0035;THETA=0.0006;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 32876489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4568;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32876553 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0026;AVGPOST=0.9959;RSQ=0.3956;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32876611 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.817;LDAF=0.0158;AVGPOST=0.9902;RSQ=0.7697;ERATE=0.0004;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32876626 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0200;AVGPOST=0.9994;RSQ=0.9845;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32876637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2382;AVGPOST=0.9960;RSQ=0.9917;ERATE=0.0009;THETA=0.0006;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 32876641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2386;AVGPOST=0.9982;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 32876676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0189;AVGPOST=0.9996;RSQ=0.9906;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32876727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0077;AVGPOST=0.9993;RSQ=0.9601;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32876734 . A AT 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.668;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.6967;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32876800 rs10581134 ACTATC A 7859 PASS INDEL;BAVGPOST=0.957;BRSQ=0.614;LDAF=0.0605;AVGPOST=0.9635;RSQ=0.7920;ERATE=0.0005;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32876852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2392;AVGPOST=0.9969;RSQ=0.9934;ERATE=0.0005;THETA=0.0002;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 32877031 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4955;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32877059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4893;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32877312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0191;AVGPOST=0.9985;RSQ=0.9710;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32877313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7584;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32877337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.4739;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32877454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0195;AVGPOST=0.9984;RSQ=0.9720;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32877456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.0082;AVGPOST=0.9959;RSQ=0.7864;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32877517 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3987;AVGPOST=0.9965;RSQ=0.9940;ERATE=0.0007;THETA=0.0004;AC=873;AN=2184 GT:DS:GL:BD 0.39972529 0 1 32877558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32877798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32877813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0252;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32877835 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0036;AVGPOST=0.9996;RSQ=0.9594;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32877853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7782;ERATE=0.0016;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32877922 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0063;AVGPOST=0.9970;RSQ=0.8256;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32877923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0133;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32877985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0117;AVGPOST=0.9994;RSQ=0.9840;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32878022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6130;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32878041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0133;AVGPOST=0.9995;RSQ=0.9848;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32878086 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0302;AVGPOST=0.9982;RSQ=0.9781;ERATE=0.0003;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32878104 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9676;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32878121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0133;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0014;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32878191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2687;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=587;AN=2184 GT:DS:GL:BD 0.26877290 0 1 32878250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9476;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32878321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9476;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32878322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32878324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9330;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32878463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32878550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8222;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32878722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.8065;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32878729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7348;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32878735 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9598;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32878751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9805;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32878845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32878900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2681;AVGPOST=0.9984;RSQ=0.9964;ERATE=0.0004;THETA=0.0008;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 32878921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.936;LDAF=0.0373;AVGPOST=0.9941;RSQ=0.9370;ERATE=0.0005;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 32878989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9990;RSQ=0.9686;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32879039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.974;LDAF=0.0495;AVGPOST=0.9969;RSQ=0.9743;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 32879080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32879185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0006;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32879225 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.3718;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 32879277 rs113104865 GCTT G 1563 PASS INDEL;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0118;AVGPOST=0.9991;RSQ=0.9668;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32879306 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9356;ERATE=0.0003;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32879335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32879337 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32879360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32879484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0399;AVGPOST=0.9984;RSQ=0.9847;ERATE=0.0003;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32879497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9774;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32879534 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0108;AVGPOST=0.9994;RSQ=0.9760;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32879649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0063;AVGPOST=0.9994;RSQ=0.9610;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32879809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32879810 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6694;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32879814 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32879846 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6439;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32880007 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0105;AVGPOST=0.9995;RSQ=0.9820;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880120 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880136 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0109;AVGPOST=0.9991;RSQ=0.9686;ERATE=0.0004;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0016;AVGPOST=0.9997;RSQ=0.8639;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32880252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9434;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32880285 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880357 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7828;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32880385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9829;ERATE=0.0004;THETA=0.0014;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9886;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32880499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0086;AVGPOST=0.9994;RSQ=0.9786;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32880578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32880631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3169;AVGPOST=0.9961;RSQ=0.9924;ERATE=0.0008;THETA=0.0005;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 32880746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8600;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32880795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32880830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6678;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32881069 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8168;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32881131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.676;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32881200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8714;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32881209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8963;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32881218 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0096;AVGPOST=0.9977;RSQ=0.9170;ERATE=0.0004;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32881223 . C CA 1030 PASS INDEL;BAVGPOST=0.990;BRSQ=0.807;LDAF=0.0271;AVGPOST=0.9827;RSQ=0.7363;ERATE=0.0028;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 32881346 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32881417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32881425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0125;AVGPOST=0.9994;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32881494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0204;AVGPOST=0.9992;RSQ=0.9839;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32881652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32881714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32881715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0135;AVGPOST=0.9971;RSQ=0.9107;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32881825 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7513;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32881913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7735;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32881956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7595;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32882067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0641;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 32882115 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32882121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8746;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32882129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7931;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32882197 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32882200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.677;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6432;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32882250 . TC T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32882343 rs67702354 C CCCAG 37256 PASS INDEL;BAVGPOST=0.981;BRSQ=0.959;LDAF=0.3008;AVGPOST=0.9812;RSQ=0.9651;ERATE=0.0036;THETA=0.0010;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 32882366 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32882391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6963;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32882411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32882482 . ACT A 4692 PASS INDEL;BAVGPOST=0.995;BRSQ=0.929;LDAF=0.0221;AVGPOST=0.9932;RSQ=0.8883;ERATE=0.0004;THETA=0.0006;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32882505 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0251;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0003;THETA=0.0016;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32882520 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9750;ERATE=0.0003;THETA=0.0013;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32882543 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32882564 rs112342296 CAGAAA C 8034 PASS INDEL;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0526;AVGPOST=0.9953;RSQ=0.9644;ERATE=0.0006;THETA=0.0008;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 32882648 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0032;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32882652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32882694 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8767;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32882705 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0004;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32882761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32882774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.734;LDAF=0.0272;AVGPOST=0.9840;RSQ=0.7713;ERATE=0.0005;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32882831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1042;AVGPOST=0.9966;RSQ=0.9860;ERATE=0.0005;THETA=0.0014;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 32882855 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.837;LDAF=0.0426;AVGPOST=0.9864;RSQ=0.8807;ERATE=0.0008;THETA=0.0009;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32882924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.968;LDAF=0.0593;AVGPOST=0.9975;RSQ=0.9839;ERATE=0.0004;THETA=0.0010;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 32883023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5400;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32883279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8873;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32883603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.459;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5229;ERATE=0.0007;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32883645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.642;LDAF=0.0055;AVGPOST=0.9946;RSQ=0.6131;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32883666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32883690 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.576;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.6982;ERATE=0.0007;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32883792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.954;LDAF=0.7006;AVGPOST=0.9638;RSQ=0.9352;ERATE=0.0019;THETA=0.0017;AC=1543;AN=2184 GT:DS:GL:BD 0.70650184 1 1 32883850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32883972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.642;LDAF=0.0106;AVGPOST=0.9949;RSQ=0.8025;ERATE=0.0006;THETA=0.0022;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32884137 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.820;LDAF=0.0035;AVGPOST=0.9970;RSQ=0.6436;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32884160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.705;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5120;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.8080;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32884674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6696;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884754 rs10674018 C CTATT 388 PASS INDEL;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9320;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32884843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7986;ERATE=0.0005;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32884888 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6189;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32884925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884964 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4344;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32884981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7433;ERATE=0.0003;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32885041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8727;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32885050 . T TGTTC 155 PASS INDEL;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32885073 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32885078 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32885162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1072;AVGPOST=0.9972;RSQ=0.9880;ERATE=0.0025;THETA=0.0005;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32885199 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6748;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32885350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5778;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32885367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0048;AVGPOST=0.9962;RSQ=0.6909;ERATE=0.0004;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32885370 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.867;LDAF=0.5011;AVGPOST=0.9372;RSQ=0.8986;ERATE=0.0103;THETA=0.0007;AC=1114;AN=2184 GT:DS:GL:BD 0.51007324 1 1 32885391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.661;LDAF=0.0157;AVGPOST=0.9849;RSQ=0.6406;ERATE=0.0022;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32885393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.819;LDAF=0.6545;AVGPOST=0.8819;RSQ=0.7945;ERATE=0.0218;THETA=0.0005;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 32885399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.502;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4538;ERATE=0.0008;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32885406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.853;LDAF=0.0120;AVGPOST=0.9953;RSQ=0.8594;ERATE=0.0004;THETA=0.0011;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32885435 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.749;LDAF=0.0309;AVGPOST=0.9814;RSQ=0.7793;ERATE=0.0018;THETA=0.0035;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32885439 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0038;AVGPOST=0.9955;RSQ=0.5244;ERATE=0.0008;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32885440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.868;LDAF=0.0155;AVGPOST=0.9968;RSQ=0.9198;ERATE=0.0006;THETA=0.0015;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32885506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0079;AVGPOST=0.9984;RSQ=0.9200;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32885546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32885569 . TTAAG T 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0064;AVGPOST=0.9968;RSQ=0.7897;ERATE=0.0007;THETA=0.0048;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32885617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0133;AVGPOST=0.9972;RSQ=0.9139;ERATE=0.0014;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32885627 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.893;LDAF=0.0176;AVGPOST=0.9961;RSQ=0.9054;ERATE=0.0013;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32885631 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32885635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32885743 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0037;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32885756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32885820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32885837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32885840 . CTGTT C 265 PASS INDEL;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0065;AVGPOST=0.9976;RSQ=0.8399;ERATE=0.0013;THETA=0.0074;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32885970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0049;AVGPOST=0.9995;RSQ=0.9657;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32886009 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9725;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32886077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32886096 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0037;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32886291 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1020;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0008;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 32886325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886334 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9493;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32886412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7194;AVGPOST=0.9963;RSQ=0.9932;ERATE=0.0004;THETA=0.0011;AC=1572;AN=2184 GT:DS:GL:BD 0.71978021 1 1 32886426 . T TAA 56 PASS INDEL;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6358;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32886446 . AAG A 112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5142;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886468 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5730;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886472 . C CTAAT 156 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886483 rs35242859 C CAGTT 17309 PASS INDEL;BAVGPOST=0.988;BRSQ=0.945;LDAF=0.1007;AVGPOST=0.9928;RSQ=0.9712;ERATE=0.0009;THETA=0.0008;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 32886500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0020;AVGPOST=0.9967;RSQ=0.3601;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886713 . ATCT A 7294 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.0592;AVGPOST=0.9939;RSQ=0.9574;ERATE=0.0005;THETA=0.0007;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 32886735 . T TTGA 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7744;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32886758 . CAT C 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5158;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32886913 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8390;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32886933 . C CTGA 475 PASS INDEL;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0046;AVGPOST=0.9975;RSQ=0.7904;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32887196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32887280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0220;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32887404 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32887423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32887535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8927;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32887581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32887644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32887657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32887684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0112;AVGPOST=0.9968;RSQ=0.8872;ERATE=0.0005;THETA=0.0019;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32887923 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9996;RSQ=0.9763;ERATE=0.0003;THETA=0.0020;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32888111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6768;ERATE=0.0005;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32888126 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7453;ERATE=0.0003;THETA=0.0049;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32888225 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.967;LDAF=0.2188;AVGPOST=0.9770;RSQ=0.9502;ERATE=0.0033;THETA=0.0065;AC=472;AN=2184 GT:DS:GL:BD 0.21611722 0 1 32888417 . AAAAG A 136 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5576;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32888436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.962;LDAF=0.0660;AVGPOST=0.9941;RSQ=0.9676;ERATE=0.0004;THETA=0.0036;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 32888461 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0543;AVGPOST=0.9980;RSQ=0.9847;ERATE=0.0004;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 32888642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.948;LDAF=0.4219;AVGPOST=0.9642;RSQ=0.9462;ERATE=0.0024;THETA=0.0031;AC=932;AN=2184 GT:DS:GL:BD 0.42673993 0 1 32888695 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0262;AVGPOST=0.9988;RSQ=0.9806;ERATE=0.0003;THETA=0.0111;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32888801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.837;LDAF=0.0200;AVGPOST=0.9948;RSQ=0.8935;ERATE=0.0005;THETA=0.0052;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32888816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0508;AVGPOST=0.9942;RSQ=0.9567;ERATE=0.0005;THETA=0.0088;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 32888817 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5193;ERATE=0.0004;THETA=0.0102;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32888819 . GC G 1541 PASS INDEL;BAVGPOST=0.989;BRSQ=0.895;LDAF=0.0459;AVGPOST=0.9877;RSQ=0.9025;ERATE=0.0006;THETA=0.0007;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32888890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.5627;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32888893 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.878;LDAF=0.1592;AVGPOST=0.9632;RSQ=0.8994;ERATE=0.0012;THETA=0.0016;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 32888906 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.883;LDAF=0.1427;AVGPOST=0.9674;RSQ=0.9060;ERATE=0.0005;THETA=0.0047;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 32888907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.4856;ERATE=0.0007;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32888916 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.691;LDAF=0.0087;AVGPOST=0.9938;RSQ=0.6771;ERATE=0.0004;THETA=0.0066;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32888919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.603;LDAF=0.0107;AVGPOST=0.9931;RSQ=0.7432;ERATE=0.0006;THETA=0.0083;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32888928 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.861;LDAF=0.0214;AVGPOST=0.9934;RSQ=0.8735;ERATE=0.0009;THETA=0.0130;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32888980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4331;ERATE=0.0005;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32888996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0081;AVGPOST=0.9947;RSQ=0.7309;ERATE=0.0008;THETA=0.0088;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32888997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.684;LDAF=0.0058;AVGPOST=0.9961;RSQ=0.7527;ERATE=0.0005;THETA=0.0032;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32889057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.929;BRSQ=0.781;LDAF=0.1487;AVGPOST=0.9196;RSQ=0.7978;ERATE=0.0045;THETA=0.0014;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 32889094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.932;BRSQ=0.777;LDAF=0.1435;AVGPOST=0.9239;RSQ=0.7991;ERATE=0.0026;THETA=0.0095;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 32889102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.584;LDAF=0.0133;AVGPOST=0.9943;RSQ=0.8207;ERATE=0.0004;THETA=0.0056;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32889116 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.884;LDAF=0.0551;AVGPOST=0.9792;RSQ=0.8520;ERATE=0.0010;THETA=0.0103;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 32889120 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.875;BRSQ=0.819;LDAF=0.4197;AVGPOST=0.8768;RSQ=0.8403;ERATE=0.0065;THETA=0.0064;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 32889133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.838;LDAF=0.1816;AVGPOST=0.9272;RSQ=0.8417;ERATE=0.0009;THETA=0.0066;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 32889147 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.844;LDAF=0.0317;AVGPOST=0.9839;RSQ=0.8105;ERATE=0.0005;THETA=0.0086;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32889149 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.896;BRSQ=0.854;LDAF=0.4868;AVGPOST=0.8937;RSQ=0.8651;ERATE=0.0047;THETA=0.0005;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 32889153 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.902;LDAF=0.0185;AVGPOST=0.9944;RSQ=0.8818;ERATE=0.0004;THETA=0.0013;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32889167 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.863;LDAF=0.5185;AVGPOST=0.8981;RSQ=0.8654;ERATE=0.0084;THETA=0.0006;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 32889168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.810;LDAF=0.0352;AVGPOST=0.9734;RSQ=0.7038;ERATE=0.0063;THETA=0.0036;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32889177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.810;LDAF=0.1309;AVGPOST=0.9580;RSQ=0.8633;ERATE=0.0064;THETA=0.0034;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 32889186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.616;LDAF=0.0062;AVGPOST=0.9954;RSQ=0.6922;ERATE=0.0004;THETA=0.0080;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32889190 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4439;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32889197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.854;LDAF=0.0747;AVGPOST=0.9719;RSQ=0.8656;ERATE=0.0029;THETA=0.0058;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 32889200 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.920;LDAF=0.1024;AVGPOST=0.9781;RSQ=0.9115;ERATE=0.0033;THETA=0.0072;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 32889228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.798;LDAF=0.0970;AVGPOST=0.9642;RSQ=0.8520;ERATE=0.0039;THETA=0.0011;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 32889232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0004;THETA=0.0183;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32889242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.390;LDAF=0.0062;AVGPOST=0.9895;RSQ=0.3399;ERATE=0.0036;THETA=0.0111;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32889263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0059;AVGPOST=0.9952;RSQ=0.6951;ERATE=0.0007;THETA=0.0055;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32889264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.861;LDAF=0.0794;AVGPOST=0.9677;RSQ=0.8363;ERATE=0.0077;THETA=0.0046;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 32889302 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.960;LDAF=0.1312;AVGPOST=0.9867;RSQ=0.9625;ERATE=0.0005;THETA=0.0039;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 32889329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0004;THETA=0.0161;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32889334 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6924;ERATE=0.0004;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32889353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.880;LDAF=0.0432;AVGPOST=0.9886;RSQ=0.9055;ERATE=0.0005;THETA=0.0149;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32889432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.928;LDAF=0.0601;AVGPOST=0.9878;RSQ=0.9275;ERATE=0.0006;THETA=0.0046;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32889450 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.974;LDAF=0.4115;AVGPOST=0.9806;RSQ=0.9720;ERATE=0.0007;THETA=0.0012;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 32889476 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.967;LDAF=0.3977;AVGPOST=0.9825;RSQ=0.9735;ERATE=0.0004;THETA=0.0076;AC=870;AN=2184 GT:DS:GL:BD 0.39835164 0 1 32889503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.572;LDAF=0.0042;AVGPOST=0.9945;RSQ=0.4164;ERATE=0.0008;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32889510 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.938;LDAF=0.0840;AVGPOST=0.9851;RSQ=0.9347;ERATE=0.0009;THETA=0.0025;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 32889541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0157;AVGPOST=0.9933;RSQ=0.8192;ERATE=0.0008;THETA=0.0052;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32889650 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.474;LDAF=0.0046;AVGPOST=0.9919;RSQ=0.2471;ERATE=0.0009;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32889673 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.960;LDAF=0.5987;AVGPOST=0.9683;RSQ=0.9558;ERATE=0.0007;THETA=0.0017;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 32889725 rs111642352 AAT A 18769 PASS INDEL;BAVGPOST=0.868;BRSQ=0.797;LDAF=0.5157;AVGPOST=0.8137;RSQ=0.7220;ERATE=0.0217;THETA=0.0026;AC=1116;AN=2184 GT:DS:GL:BD 0.51098901 1 1 32889751 . TA T 39 PASS INDEL;BAVGPOST=0.994;BRSQ=0.709;LDAF=0.0193;AVGPOST=0.9757;RSQ=0.4982;ERATE=0.0020;THETA=0.0019;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32889763 rs58225820 TA T 9248 PASS INDEL;BAVGPOST=0.843;BRSQ=0.738;LDAF=0.4334;AVGPOST=0.7929;RSQ=0.6637;ERATE=0.0406;THETA=0.0035;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 32889765 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.959;LDAF=0.5935;AVGPOST=0.9672;RSQ=0.9508;ERATE=0.0028;THETA=0.0006;AC=1301;AN=2184 GT:DS:GL:BD 0.59569597 1 1 32889789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5745;ERATE=0.0009;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32889808 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0476;AVGPOST=0.9978;RSQ=0.9796;ERATE=0.0005;THETA=0.0045;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 32889811 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.510;LDAF=0.0073;AVGPOST=0.9908;RSQ=0.4606;ERATE=0.0010;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32889824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.307;LDAF=0.0165;AVGPOST=0.9793;RSQ=0.5019;ERATE=0.0016;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32889853 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0075;AVGPOST=0.9968;RSQ=0.8005;ERATE=0.0008;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32889929 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.966;LDAF=0.0518;AVGPOST=0.9901;RSQ=0.9283;ERATE=0.0007;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 32889958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0487;AVGPOST=0.9981;RSQ=0.9833;ERATE=0.0004;THETA=0.0044;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32889992 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.708;LDAF=0.0060;AVGPOST=0.9959;RSQ=0.7171;ERATE=0.0005;THETA=0.0042;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32890044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4635;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32890095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0484;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0004;THETA=0.0008;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32890097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7259;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32890139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6552;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32890197 . TA T 411 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0058;AVGPOST=0.9989;RSQ=0.9213;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32890198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32890200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0034;AVGPOST=0.9952;RSQ=0.6026;ERATE=0.0003;THETA=0.0066;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32890228 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0086;AVGPOST=0.9989;RSQ=0.9444;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32890289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32890379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0483;AVGPOST=0.9991;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32890409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0199;AVGPOST=0.9974;RSQ=0.9463;ERATE=0.0007;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32890424 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.945;LDAF=0.0295;AVGPOST=0.9945;RSQ=0.9352;ERATE=0.0004;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32890470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0487;AVGPOST=0.9989;RSQ=0.9920;ERATE=0.0003;THETA=0.0006;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 32890486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.2526;AVGPOST=0.9867;RSQ=0.9737;ERATE=0.0005;THETA=0.0009;AC=548;AN=2184 GT:DS:GL:BD 0.25091577 0 1 32890504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0104;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0004;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32890612 . ATG A 2325 PASS INDEL;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0166;AVGPOST=0.9978;RSQ=0.9549;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32890711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.760;LDAF=0.0235;AVGPOST=0.9890;RSQ=0.8262;ERATE=0.0006;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32890802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3788;ERATE=0.0006;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32890863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0499;AVGPOST=0.9957;RSQ=0.9651;ERATE=0.0007;THETA=0.0022;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 32890868 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0481;AVGPOST=0.9997;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32890966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.883;LDAF=0.0492;AVGPOST=0.9971;RSQ=0.9758;ERATE=0.0005;THETA=0.0004;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 32891085 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9348;ERATE=0.0007;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32891141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0481;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32891171 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7930;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32891177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9239;ERATE=0.0003;THETA=0.0022;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32891228 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0481;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32891233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32891264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9426;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32891291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9358;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32891318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0481;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32891330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0068;AVGPOST=0.9972;RSQ=0.8340;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32891480 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32891564 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0149;AVGPOST=0.9995;RSQ=0.9864;ERATE=0.0004;THETA=0.0010;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32891671 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9434;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32891679 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32891723 . AAATCAAAAAT A 1305 PASS INDEL;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0054;AVGPOST=0.9953;RSQ=0.6184;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32891728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0483;AVGPOST=0.9992;RSQ=0.9935;ERATE=0.0004;THETA=0.0027;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32891788 . G GGTT 1055 PASS INDEL;BAVGPOST=0.995;BRSQ=0.830;LDAF=0.0169;AVGPOST=0.9961;RSQ=0.9117;ERATE=0.0005;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32891808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0226;AVGPOST=0.9987;RSQ=0.9753;ERATE=0.0004;THETA=0.0008;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32891952 . AT A 4447 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0488;AVGPOST=0.9984;RSQ=0.9879;ERATE=0.0003;THETA=0.0015;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32891972 . AT A 85 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8107;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32891979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.571;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.4506;ERATE=0.0004;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32892060 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.830;LDAF=0.0157;AVGPOST=0.9946;RSQ=0.8376;ERATE=0.0011;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32892101 rs35290666 AT A 38 PASS INDEL;BAVGPOST=0.950;BRSQ=0.286;LDAF=0.0391;AVGPOST=0.9520;RSQ=0.5250;ERATE=0.0048;THETA=0.0011;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32892195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.892;LDAF=0.1412;AVGPOST=0.9805;RSQ=0.9386;ERATE=0.0010;THETA=0.0003;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 32892232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.881;LDAF=0.0728;AVGPOST=0.9806;RSQ=0.9045;ERATE=0.0006;THETA=0.0010;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 32892252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.760;LDAF=0.0114;AVGPOST=0.9920;RSQ=0.7533;ERATE=0.0007;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32892256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.874;LDAF=0.1168;AVGPOST=0.9771;RSQ=0.9282;ERATE=0.0006;THETA=0.0009;AC=253;AN=2184 GT:DS:GL:BD 0.11584249 0 1 32892273 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.894;LDAF=0.5052;AVGPOST=0.9328;RSQ=0.9093;ERATE=0.0017;THETA=0.0004;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 32892317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.898;LDAF=0.5111;AVGPOST=0.9370;RSQ=0.9150;ERATE=0.0027;THETA=0.0017;AC=1130;AN=2184 GT:DS:GL:BD 0.51739925 1 1 32892318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.958;LDAF=0.2198;AVGPOST=0.9901;RSQ=0.9793;ERATE=0.0003;THETA=0.0006;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 32892326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0978;AVGPOST=0.9959;RSQ=0.9824;ERATE=0.0005;THETA=0.0008;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 32892368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0327;AVGPOST=0.9990;RSQ=0.9867;ERATE=0.0003;THETA=0.0077;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 32892496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32892599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9074;ERATE=0.0005;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32892626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3042;AVGPOST=0.9952;RSQ=0.9907;ERATE=0.0007;THETA=0.0002;AC=666;AN=2184 GT:DS:GL:BD 0.30494505 0 1 32892635 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5011;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32892716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0187;AVGPOST=0.9993;RSQ=0.9852;ERATE=0.0003;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32892753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5198;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32892805 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6062;AVGPOST=0.9959;RSQ=0.9936;ERATE=0.0008;THETA=0.0005;AC=1325;AN=2184 GT:DS:GL:BD 0.60668498 1 1 32892813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0089;AVGPOST=0.9994;RSQ=0.9711;ERATE=0.0005;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32892990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0086;AVGPOST=0.9988;RSQ=0.9405;ERATE=0.0006;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32893035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.750;LDAF=0.0053;AVGPOST=0.9979;RSQ=0.8434;ERATE=0.0006;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32893051 . TA T 877 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9984;RSQ=0.9273;ERATE=0.0005;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32893127 rs3841804 T TA 2709 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0209;AVGPOST=0.9990;RSQ=0.9811;ERATE=0.0003;THETA=0.0015;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32893243 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.4874;AVGPOST=0.9665;RSQ=0.9544;ERATE=0.0041;THETA=0.0010;AC=1075;AN=2184 GT:DS:GL:BD 0.49221611 0 1 32893321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9445;ERATE=0.0004;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32893327 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9442;ERATE=0.0003;THETA=0.0023;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32893393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5766;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32893444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5346;ERATE=0.0003;THETA=0.0084;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32893499 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.6950;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32893515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7298;ERATE=0.0003;THETA=0.0049;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32893561 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.6913;ERATE=0.0012;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32893622 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.5128;AVGPOST=0.9957;RSQ=0.9937;ERATE=0.0007;THETA=0.0004;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 32893698 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.9189;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0004;THETA=0.0009;AC=2007;AN=2184 GT:DS:GL:BD 0.91895604 1 1 32893727 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9291;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0010;AC=2029;AN=2184 GT:DS:GL:BD 0.92902929 1 1 32893755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6811;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32893767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5092;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0005;THETA=0.0012;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 32893795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0644;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32893836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5082;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0006;THETA=0.0002;AC=1111;AN=2184 GT:DS:GL:BD 0.50869966 1 1 32893846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7537;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32893876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6250;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32894039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3306;AVGPOST=0.9931;RSQ=0.9886;ERATE=0.0004;THETA=0.0007;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 32894132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0195;AVGPOST=0.9992;RSQ=0.9816;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32894156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5449;AVGPOST=0.9972;RSQ=0.9955;ERATE=0.0009;THETA=0.0003;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 32894167 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894185 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0201;AVGPOST=0.9992;RSQ=0.9804;ERATE=0.0004;THETA=0.0029;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32894269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5682;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0183;AVGPOST=0.9991;RSQ=0.9769;ERATE=0.0004;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32894283 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32894344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5097;AVGPOST=0.9990;RSQ=0.9986;ERATE=0.0003;THETA=0.0011;AC=1113;AN=2184 GT:DS:GL:BD 0.50961536 1 1 32894382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4956;AVGPOST=0.9993;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 32894445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8075;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32894682 . G GT 116 PASS INDEL;BAVGPOST=0.995;BRSQ=0.452;LDAF=0.0118;AVGPOST=0.9855;RSQ=0.5051;ERATE=0.0030;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32894690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.944;LDAF=0.0242;AVGPOST=0.9972;RSQ=0.9575;ERATE=0.0003;THETA=0.0007;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 32894723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0357;AVGPOST=0.9999;RSQ=0.9988;ERATE=0.0003;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 32894743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32894862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32894880 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9667;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32894934 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8181;ERATE=0.0004;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32894940 . A AC 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32894947 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32895006 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0129;AVGPOST=0.9992;RSQ=0.9794;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32895039 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6870;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32895247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5288;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0007;THETA=0.0004;AC=1155;AN=2184 GT:DS:GL:BD 0.52884614 1 1 32895294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4153;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32895295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0141;AVGPOST=0.9976;RSQ=0.9292;ERATE=0.0005;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32895333 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0212;AVGPOST=0.9950;RSQ=0.8995;ERATE=0.0005;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32895349 . G GT 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6399;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32895353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.377;LDAF=0.0098;AVGPOST=0.9836;RSQ=0.3377;ERATE=0.0037;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32895363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.982;LDAF=0.5247;AVGPOST=0.9904;RSQ=0.9868;ERATE=0.0011;THETA=0.0002;AC=1151;AN=2184 GT:DS:GL:BD 0.52701467 1 1 32895404 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0168;AVGPOST=0.9949;RSQ=0.8707;ERATE=0.0008;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32895478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6640;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32895660 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3192;AVGPOST=0.9953;RSQ=0.9924;ERATE=0.0005;THETA=0.0005;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 32895909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7335;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32895985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9308;AVGPOST=0.9992;RSQ=0.9955;ERATE=0.0005;THETA=0.0003;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 32896057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7327;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32896098 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5296;AVGPOST=0.9936;RSQ=0.9917;ERATE=0.0013;THETA=0.0004;AC=1158;AN=2184 GT:DS:GL:BD 0.53021979 1 1 32896173 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9992;RSQ=0.9703;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32896333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0202;AVGPOST=0.9978;RSQ=0.9562;ERATE=0.0004;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32896410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0645;AVGPOST=0.9988;RSQ=0.9914;ERATE=0.0005;THETA=0.0002;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32896470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9413;ERATE=0.0005;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32896569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.6634;ERATE=0.0005;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32896587 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0035;AVGPOST=0.9946;RSQ=0.4526;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32896704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.581;LDAF=0.0030;AVGPOST=0.9949;RSQ=0.3211;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32896721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.962;LDAF=0.3134;AVGPOST=0.9951;RSQ=0.9913;ERATE=0.0007;THETA=0.0002;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 32896747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0074;AVGPOST=0.9977;RSQ=0.8574;ERATE=0.0006;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32896751 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.859;LDAF=0.9104;AVGPOST=0.9662;RSQ=0.8722;ERATE=0.0029;THETA=0.0006;AC=2012;AN=2184 GT:DS:GL:BD 0.92124540 1 1 32896818 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0208;AVGPOST=0.9995;RSQ=0.9881;ERATE=0.0004;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32896821 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7249;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32896824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.553;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6756;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32896826 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7804;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32896904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0100;AVGPOST=0.9971;RSQ=0.8802;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32896930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.618;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7903;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32896945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7289;ERATE=0.0008;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32896980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6770;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32896982 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.924;LDAF=0.9151;AVGPOST=0.9850;RSQ=0.9414;ERATE=0.0016;THETA=0.0005;AC=2005;AN=2184 GT:DS:GL:BD 0.91804028 1 1 32897019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.964;LDAF=0.5010;AVGPOST=0.9834;RSQ=0.9782;ERATE=0.0011;THETA=0.0005;AC=1099;AN=2184 GT:DS:GL:BD 0.50320512 1 1 32897020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.967;LDAF=0.1717;AVGPOST=0.9973;RSQ=0.9929;ERATE=0.0006;THETA=0.0003;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 32897066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0111;AVGPOST=0.9991;RSQ=0.9643;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32897137 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.842;LDAF=0.0121;AVGPOST=0.9958;RSQ=0.8478;ERATE=0.0005;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32897228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5162;AVGPOST=0.9989;RSQ=0.9984;ERATE=0.0004;THETA=0.0003;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 32897347 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4537;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32897441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0091;AVGPOST=0.9995;RSQ=0.9773;ERATE=0.0003;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32897470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32897477 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0126;AVGPOST=0.9985;RSQ=0.9506;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32897618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0091;AVGPOST=0.9986;RSQ=0.9333;ERATE=0.0005;THETA=0.0020;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32897664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5160;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=1127;AN=2184 GT:DS:GL:BD 0.51602566 1 1 32897733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32897770 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0646;AVGPOST=0.9991;RSQ=0.9938;ERATE=0.0004;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32897822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8773;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32897850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4971;AVGPOST=0.9979;RSQ=0.9969;ERATE=0.0004;THETA=0.0004;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 32897900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32897954 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32898007 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5626;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32898104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4184;AVGPOST=0.9899;RSQ=0.9845;ERATE=0.0006;THETA=0.0013;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 32898217 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5571;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32898305 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0071;AVGPOST=0.9986;RSQ=0.9355;ERATE=0.0003;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32898458 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0051;AVGPOST=0.9983;RSQ=0.8637;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32898541 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8126;ERATE=0.0004;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32898733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32898877 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32899092 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5353;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32899134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.834;BRSQ=0.713;LDAF=0.3522;AVGPOST=0.8066;RSQ=0.6935;ERATE=0.0194;THETA=0.0009;AC=735;AN=2184 GT:DS:GL:BD 0.33653846 0 1 32899406 . GTA G 1195 PASS INDEL;BAVGPOST=0.574;BRSQ=0.259;LDAF=0.5057;AVGPOST=0.6782;RSQ=0.4804;ERATE=0.0208;THETA=0.0009;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 32899423 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.221;LDAF=0.1644;AVGPOST=0.7756;RSQ=0.3371;ERATE=0.0155;THETA=0.0012;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 32899483 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.629;BRSQ=0.224;LDAF=0.3535;AVGPOST=0.6910;RSQ=0.4309;ERATE=0.0320;THETA=0.0006;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 32899559 . T TA 19 PASS INDEL;BAVGPOST=0.812;BRSQ=0.157;LDAF=0.1304;AVGPOST=0.8707;RSQ=0.5637;ERATE=0.0053;THETA=0.0037;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 32899568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5041;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32899790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32899792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32899798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9355;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32899813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6836;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32899816 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900067 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4197;AVGPOST=0.9953;RSQ=0.9930;ERATE=0.0005;THETA=0.0006;AC=918;AN=2184 GT:DS:GL:BD 0.42032966 0 1 32900129 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0654;AVGPOST=0.9998;RSQ=0.9988;ERATE=0.0003;THETA=0.0006;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32900144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0125;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0013;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32900226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32900232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4124;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900286 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0039;AVGPOST=0.9993;RSQ=0.9180;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32900329 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900332 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0652;AVGPOST=0.9996;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32900430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9618;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32900577 rs59879777 AAGG A 19537 PASS INDEL;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0654;AVGPOST=0.9985;RSQ=0.9911;ERATE=0.0010;THETA=0.0015;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32900640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7063;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900670 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6598;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32900731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5427;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7879;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32900928 . CTTA C 124 PASS INDEL;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32900989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6942;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32900995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6869;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32901063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9376;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32901112 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0105;AVGPOST=0.9993;RSQ=0.9764;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32901118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6920;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32901129 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32901130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0064;AVGPOST=0.9976;RSQ=0.8662;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32901185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5037;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32901232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.908;LDAF=0.0083;AVGPOST=0.9980;RSQ=0.9167;ERATE=0.0003;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32901236 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9579;ERATE=0.0005;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32901251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32901587 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4815;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32901595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0005;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32901630 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7787;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32901647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.6972;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32901732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32902011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0109;AVGPOST=0.9996;RSQ=0.9861;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32902032 . G GT 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32902046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.1187;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32902057 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.782;LDAF=0.0140;AVGPOST=0.9947;RSQ=0.8409;ERATE=0.0003;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32902116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9497;ERATE=0.0004;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32902216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4202;AVGPOST=0.9925;RSQ=0.9880;ERATE=0.0006;THETA=0.0003;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 32902219 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4204;AVGPOST=0.9926;RSQ=0.9884;ERATE=0.0007;THETA=0.0011;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 32902286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9026;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32902324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.836;LDAF=0.0133;AVGPOST=0.9974;RSQ=0.9190;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32902375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.5760;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32902385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7064;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32902458 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0121;AVGPOST=0.9984;RSQ=0.9417;ERATE=0.0004;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32902493 . TATAC T 2582 PASS INDEL;BAVGPOST=0.919;BRSQ=0.561;LDAF=0.1340;AVGPOST=0.8777;RSQ=0.5846;ERATE=0.0080;THETA=0.0004;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 32902632 . T TAC 670 PASS INDEL;BAVGPOST=0.817;BRSQ=0.298;LDAF=0.2132;AVGPOST=0.7435;RSQ=0.3608;ERATE=0.0222;THETA=0.0006;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 32902642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.878;LDAF=0.0622;AVGPOST=0.9819;RSQ=0.8932;ERATE=0.0013;THETA=0.0007;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 32902659 . T TAC 486 PASS INDEL;BAVGPOST=0.898;BRSQ=0.315;LDAF=0.0827;AVGPOST=0.9037;RSQ=0.5184;ERATE=0.0015;THETA=0.0009;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 32902662 . T TTA 2590 PASS INDEL;BAVGPOST=0.980;BRSQ=0.857;LDAF=0.0817;AVGPOST=0.9579;RSQ=0.8023;ERATE=0.0037;THETA=0.0020;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 32902669 . TA T 26 PASS INDEL;BAVGPOST=0.972;BRSQ=0.349;LDAF=0.0390;AVGPOST=0.9445;RSQ=0.4252;ERATE=0.0061;THETA=0.0011;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32902780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0116;AVGPOST=0.9992;RSQ=0.9680;ERATE=0.0003;THETA=0.0014;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32902874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32902882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0050;AVGPOST=0.9965;RSQ=0.7141;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32902941 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5262;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=1150;AN=2184 GT:DS:GL:BD 0.52655679 1 1 32902973 . C CAG 5953 PASS INDEL;BAVGPOST=0.971;BRSQ=0.812;LDAF=0.0897;AVGPOST=0.9576;RSQ=0.8163;ERATE=0.0049;THETA=0.0002;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 32903200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32903205 . G GAC 2907 PASS INDEL;BAVGPOST=0.983;BRSQ=0.904;LDAF=0.1066;AVGPOST=0.9843;RSQ=0.9374;ERATE=0.0020;THETA=0.0003;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 32903210 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.592;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7859;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32903421 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7332;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32903513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0106;AVGPOST=0.9969;RSQ=0.8751;ERATE=0.0005;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32903632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32903721 . TTA T 181 PASS INDEL;BAVGPOST=0.974;BRSQ=0.510;LDAF=0.0589;AVGPOST=0.9167;RSQ=0.3531;ERATE=0.0166;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32903985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5786;AVGPOST=0.9974;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 32904005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0499;AVGPOST=0.9989;RSQ=0.9932;ERATE=0.0004;THETA=0.0022;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 32904199 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32904256 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8586;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32904386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32904442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9220;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32904518 . CA C 161 PASS INDEL;BAVGPOST=0.959;BRSQ=0.479;LDAF=0.0668;AVGPOST=0.9131;RSQ=0.4230;ERATE=0.0251;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 32904581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0047;AVGPOST=0.9953;RSQ=0.6330;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32904640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7649;ERATE=0.0014;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32904697 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5995;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32904774 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1255;AVGPOST=0.9977;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 32904845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0030;AVGPOST=0.9970;RSQ=0.6471;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32904904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7705;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32905080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5650;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905081 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0579;AVGPOST=0.9987;RSQ=0.9888;ERATE=0.0003;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32905156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8830;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32905160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0471;AVGPOST=0.9988;RSQ=0.9922;ERATE=0.0003;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32905197 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32905223 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0063;AVGPOST=0.9987;RSQ=0.9217;ERATE=0.0004;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32905252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9865;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32905271 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905329 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0682;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 32905335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32905453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5265;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7698;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32905697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0051;AVGPOST=0.9992;RSQ=0.9360;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32905737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5826;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4728;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32905841 . AT A 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.5569;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32905849 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9845;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32905883 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5871;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32906037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6891;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32906160 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0483;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32906325 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32906467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32906499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32906503 . ATC A 485 PASS INDEL;BAVGPOST=0.972;BRSQ=0.657;LDAF=0.0649;AVGPOST=0.9367;RSQ=0.5593;ERATE=0.0240;THETA=0.0004;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 32906527 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8202;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32906581 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0034;AVGPOST=0.9980;RSQ=0.7456;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32906583 . GT G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6660;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32906631 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4399;AVGPOST=0.9961;RSQ=0.9931;ERATE=0.0006;THETA=0.0006;AC=961;AN=2184 GT:DS:GL:BD 0.44001833 0 1 32906702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32906708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4820;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32906718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9159;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32906800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6684;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32906808 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32906919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0579;AVGPOST=0.9979;RSQ=0.9884;ERATE=0.0004;THETA=0.0007;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 32906933 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5174;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32906952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7825;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32907125 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4448;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32907169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9443;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32907335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4760;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 32907392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32907398 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5338;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32907415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32907435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32907464 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8316;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32907686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6527;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32907780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.934;LDAF=0.9166;AVGPOST=0.9906;RSQ=0.9517;ERATE=0.0004;THETA=0.0005;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 32907860 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4647;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32907912 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32907990 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7972;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32908066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.847;LDAF=0.0076;AVGPOST=0.9988;RSQ=0.9276;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32908081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32908132 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32908186 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32908216 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5670;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32908403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1923;AVGPOST=0.9896;RSQ=0.9729;ERATE=0.0016;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 32908416 . T TGA 145 PASS INDEL;BAVGPOST=0.998;BRSQ=0.697;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5540;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32908484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0042;AVGPOST=0.9943;RSQ=0.4482;ERATE=0.0010;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32908624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.752;LDAF=0.0094;AVGPOST=0.9958;RSQ=0.8365;ERATE=0.0003;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32908630 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5644;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32908671 . AT A 241 PASS INDEL;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7846;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32908682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.673;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5023;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32908683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6879;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32908746 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.783;LDAF=0.0056;AVGPOST=0.9978;RSQ=0.8159;ERATE=0.0012;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32908760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0085;AVGPOST=0.9989;RSQ=0.9510;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32908861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5735;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32908919 . ATT A 34884 PASS INDEL;BAVGPOST=0.982;BRSQ=0.967;LDAF=0.3720;AVGPOST=0.9926;RSQ=0.9884;ERATE=0.0009;THETA=0.0006;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 32909019 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4968;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32909046 rs71172638 GAT G 26322 PASS INDEL;BAVGPOST=0.943;BRSQ=0.906;LDAF=0.3705;AVGPOST=0.9867;RSQ=0.9796;ERATE=0.0006;THETA=0.0002;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32909071 . ATC A 10613 PASS INDEL;BAVGPOST=0.904;BRSQ=0.840;LDAF=0.4290;AVGPOST=0.8803;RSQ=0.8312;ERATE=0.0060;THETA=0.0002;AC=887;AN=2184 GT:DS:GL:BD 0.40613553 0 1 32909074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3778;AVGPOST=0.9949;RSQ=0.9912;ERATE=0.0020;THETA=0.0006;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 32909290 . AAAAT A 33 PASS INDEL;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4467;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32909325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6197;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32909366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8380;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32909373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3757;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0007;THETA=0.0004;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32909381 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.3745;AVGPOST=0.9961;RSQ=0.9937;ERATE=0.0005;THETA=0.0003;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 32909486 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.3749;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0005;THETA=0.0006;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32909495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3775;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0007;THETA=0.0004;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 32909532 . AT A 459 PASS INDEL;BAVGPOST=0.992;BRSQ=0.701;LDAF=0.0168;AVGPOST=0.9874;RSQ=0.7183;ERATE=0.0008;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32909581 . TA T 27 PASS INDEL;BAVGPOST=0.999;BRSQ=0.536;LDAF=0.0040;AVGPOST=0.9936;RSQ=0.3760;ERATE=0.0008;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32909701 rs35567907 TTG T 39510 PASS INDEL;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3758;AVGPOST=0.9966;RSQ=0.9942;ERATE=0.0005;THETA=0.0007;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32909883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.3764;AVGPOST=0.9959;RSQ=0.9939;ERATE=0.0006;THETA=0.0008;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 32909895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.6995;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32909901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3755;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0005;THETA=0.0006;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32909980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0032;AVGPOST=0.9993;RSQ=0.9181;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32910098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3751;AVGPOST=0.9969;RSQ=0.9950;ERATE=0.0008;THETA=0.0004;AC=817;AN=2184 GT:DS:GL:BD 0.37408423 0 1 32910117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3761;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0005;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32910243 . TG T 218 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5230;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32910319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3830;AVGPOST=0.9948;RSQ=0.9916;ERATE=0.0012;THETA=0.0003;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 32910343 rs71702403 ATC A 19818 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1878;AVGPOST=0.9975;RSQ=0.9934;ERATE=0.0005;THETA=0.0004;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 32910374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8552;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32910386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3758;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32910474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3760;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0003;THETA=0.0040;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32910546 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3761;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0004;THETA=0.0006;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 32910709 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32910719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32910821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32910884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32910914 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3761;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 32910951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1884;AVGPOST=0.9982;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 32911017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32911031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.959;LDAF=0.0285;AVGPOST=0.9960;RSQ=0.9501;ERATE=0.0003;THETA=0.0008;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32911091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6687;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32911096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32911127 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32911288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.9012;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32911376 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3777;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0045;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 32911473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32911694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7885;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32911721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9589;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32911807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3756;AVGPOST=0.9957;RSQ=0.9935;ERATE=0.0007;THETA=0.0003;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 32911837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8186;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32911918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32911930 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9414;ERATE=0.0003;THETA=0.0042;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32912018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5900;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32912040 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2131;AVGPOST=0.9941;RSQ=0.9858;ERATE=0.0006;THETA=0.0017;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 32912046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0041;AVGPOST=0.9972;RSQ=0.7557;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32912060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5594;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32912078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.947;LDAF=0.0434;AVGPOST=0.9887;RSQ=0.9082;ERATE=0.0012;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32912146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.664;LDAF=0.0083;AVGPOST=0.9917;RSQ=0.6294;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32912157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0133;AVGPOST=0.9950;RSQ=0.8506;ERATE=0.0003;THETA=0.0012;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32912169 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.969;LDAF=0.3645;AVGPOST=0.9892;RSQ=0.9830;ERATE=0.0011;THETA=0.0006;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 32912199 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.958;LDAF=0.3668;AVGPOST=0.9916;RSQ=0.9867;ERATE=0.0007;THETA=0.0009;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 32912241 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.3742;AVGPOST=0.9947;RSQ=0.9917;ERATE=0.0004;THETA=0.0006;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 32912335 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.3740;AVGPOST=0.9946;RSQ=0.9916;ERATE=0.0005;THETA=0.0008;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 32912338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32912418 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.678;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32912467 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=1.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0008;AC=2184;AN=2184 GT:DS:GL:BD 1.00000000 1 1 32912473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7086;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32912516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0091;AVGPOST=0.9985;RSQ=0.9328;ERATE=0.0007;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32912560 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3775;AVGPOST=0.9983;RSQ=0.9973;ERATE=0.0008;THETA=0.0022;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 32912567 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9469;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32912578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3769;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0004;THETA=0.0022;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 32912602 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3832;AVGPOST=0.9983;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 32912654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3829;AVGPOST=0.9984;RSQ=0.9978;ERATE=0.0003;THETA=0.0077;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 32912673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3831;AVGPOST=0.9950;RSQ=0.9924;ERATE=0.0007;THETA=0.0108;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 32912754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0053;AVGPOST=0.9990;RSQ=0.9397;ERATE=0.0003;THETA=0.0139;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32912763 rs71172639 T TCTTCCTTCCCTTC 69479 PASS INDEL;BAVGPOST=0.963;BRSQ=0.936;LDAF=0.3406;AVGPOST=0.9595;RSQ=0.9433;ERATE=0.0014;THETA=0.0056;AC=754;AN=2184 GT:DS:GL:BD 0.34523809 0 1 32912879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.929;LDAF=0.3301;AVGPOST=0.9661;RSQ=0.9501;ERATE=0.0007;THETA=0.0006;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 32912985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7217;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32913009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.2200;AVGPOST=0.9960;RSQ=0.9915;ERATE=0.0005;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 32913094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6765;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32913226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32913255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0046;AVGPOST=0.9959;RSQ=0.6700;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32913359 . T TA 159 PASS INDEL;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0050;AVGPOST=0.9968;RSQ=0.7859;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32913361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.633;LDAF=0.0034;AVGPOST=0.9955;RSQ=0.4669;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32913412 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0023;AVGPOST=0.9992;RSQ=0.8534;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32913565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32913572 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32913584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1112;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0005;THETA=0.0004;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 32913687 . AAAACT A 218 PASS INDEL;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0033;AVGPOST=0.9955;RSQ=0.4499;ERATE=0.0011;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32913892 . AAAAG A 451 PASS INDEL;BAVGPOST=0.995;BRSQ=0.752;LDAF=0.0120;AVGPOST=0.9899;RSQ=0.6497;ERATE=0.0017;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32913944 . A AG 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0036;AVGPOST=0.9969;RSQ=0.6307;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32913946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6500;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32913982 . GGA G 1024 PASS INDEL;BAVGPOST=0.979;BRSQ=0.717;LDAF=0.0567;AVGPOST=0.9511;RSQ=0.6128;ERATE=0.0122;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 32914033 . AAAAG A 576 PASS INDEL;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0143;AVGPOST=0.9953;RSQ=0.8825;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32914064 . AAAAGAAAAG A 413 PASS INDEL;BAVGPOST=0.997;BRSQ=0.705;LDAF=0.0065;AVGPOST=0.9946;RSQ=0.6959;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32914077 . GA G 87 PASS INDEL;BAVGPOST=0.997;BRSQ=0.723;LDAF=0.0069;AVGPOST=0.9956;RSQ=0.7559;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32914081 . AAAAG A 245 PASS INDEL;BAVGPOST=0.994;BRSQ=0.717;LDAF=0.0161;AVGPOST=0.9815;RSQ=0.5278;ERATE=0.0044;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32914091 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9747;ERATE=0.0004;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32914215 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4365;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32914301 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3379;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32914331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0252;AVGPOST=0.9991;RSQ=0.9854;ERATE=0.0004;THETA=0.0003;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32914420 . GTAAC G 4420 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0210;AVGPOST=0.9991;RSQ=0.9820;ERATE=0.0004;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32914556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32914623 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32914644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7804;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32914722 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1206;AVGPOST=0.9978;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 32914801 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0130;AVGPOST=0.9988;RSQ=0.9752;ERATE=0.0004;THETA=0.0001;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32914821 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9666;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32914826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32914861 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32914864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0139;AVGPOST=0.9973;RSQ=0.9221;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32914926 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6677;ERATE=0.0010;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32915140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0129;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32915221 . T TA 122 PASS INDEL;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4847;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32915226 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2878;AVGPOST=0.9954;RSQ=0.9913;ERATE=0.0006;THETA=0.0002;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 32915231 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6150;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32915305 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6882;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0006;THETA=0.0004;AC=1502;AN=2184 GT:DS:GL:BD 0.68772894 1 1 32915455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9012;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32915513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.7958;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32915551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5778;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32915753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32915782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1098;AVGPOST=0.9979;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 32915889 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4696;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32915914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.6959;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32915952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9725;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32916052 rs34100647 A AT 10432 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1207;AVGPOST=0.9973;RSQ=0.9898;ERATE=0.0005;THETA=0.0002;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 32916126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8315;ERATE=0.0003;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32916162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8663;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32916289 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32916297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7178;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32916339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8304;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=1813;AN=2184 GT:DS:GL:BD 0.83012819 1 1 32916379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9586;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32916453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6693;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32916455 . A AG 359 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9577;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32916471 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32916501 . A AC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4118;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32916555 . C CCTTA 190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4643;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32916591 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.842;LDAF=0.0140;AVGPOST=0.9974;RSQ=0.9229;ERATE=0.0004;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32916603 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5929;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32916884 . CA C 354 PASS INDEL;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0052;AVGPOST=0.9973;RSQ=0.7892;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32916968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4295;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32917171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8144;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32917189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7425;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32917216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917217 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8007;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32917265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6565;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32917367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2829;AVGPOST=0.9983;RSQ=0.9967;ERATE=0.0004;THETA=0.0006;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 32917424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8994;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32917440 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7142;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32917470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7061;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32917589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32917685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8637;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32917698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2913;AVGPOST=0.9983;RSQ=0.9969;ERATE=0.0004;THETA=0.0002;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 32917721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917780 . CAG C 259 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8564;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32917808 . CAG C 184 PASS INDEL;BAVGPOST=0.998;BRSQ=0.729;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917902 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5362;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32917928 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32918038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9619;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32918216 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32918419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32918442 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32918472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32918510 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0268;AVGPOST=0.9992;RSQ=0.9892;ERATE=0.0003;THETA=0.0011;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 32918569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0060;AVGPOST=0.9978;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32918574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.974;LDAF=0.3433;AVGPOST=0.9819;RSQ=0.9733;ERATE=0.0006;THETA=0.0005;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 32918680 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.946;LDAF=0.6415;AVGPOST=0.9800;RSQ=0.9727;ERATE=0.0006;THETA=0.0004;AC=1406;AN=2184 GT:DS:GL:BD 0.64377290 1 1 32918725 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.949;LDAF=0.4670;AVGPOST=0.9779;RSQ=0.9713;ERATE=0.0008;THETA=0.0006;AC=1022;AN=2184 GT:DS:GL:BD 0.46794870 0 1 32918726 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.883;LDAF=0.0223;AVGPOST=0.9965;RSQ=0.9324;ERATE=0.0009;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32918773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9642;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32918803 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32918806 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1914;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 32918853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32918863 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0151;AVGPOST=0.9996;RSQ=0.9886;ERATE=0.0003;THETA=0.0022;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32918866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0706;AVGPOST=0.9991;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 32918916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32918954 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0178;AVGPOST=0.9991;RSQ=0.9773;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32918998 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32919080 rs71576066 AAG A 6171 PASS INDEL;BAVGPOST=0.981;BRSQ=0.867;LDAF=0.0661;AVGPOST=0.9868;RSQ=0.9254;ERATE=0.0004;THETA=0.0009;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 32919201 . GGT G 923 PASS INDEL;BAVGPOST=0.978;BRSQ=0.843;LDAF=0.0630;AVGPOST=0.9861;RSQ=0.9155;ERATE=0.0004;THETA=0.0008;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 32919205 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0249;AVGPOST=0.9991;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 32919247 . GC G 1520 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32919344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0275;AVGPOST=0.9996;RSQ=0.9931;ERATE=0.0003;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32919357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8045;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32919465 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.800;LDAF=0.0055;AVGPOST=0.9986;RSQ=0.9046;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32919470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32919606 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0091;AVGPOST=0.9982;RSQ=0.9275;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32919630 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9434;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32919709 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0334;AVGPOST=0.9979;RSQ=0.9773;ERATE=0.0004;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32919714 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9656;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32919746 . C CA 112 PASS INDEL;BAVGPOST=0.989;BRSQ=0.559;LDAF=0.0254;AVGPOST=0.9713;RSQ=0.5409;ERATE=0.0071;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32919775 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32919874 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32919880 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32919926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8872;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32920040 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7408;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32920041 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.7258;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32920128 . AAT A 443 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5826;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32920160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32920254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32920297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6488;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32920321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0394;AVGPOST=0.9993;RSQ=0.9917;ERATE=0.0003;THETA=0.0007;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32920363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8784;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32920466 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.6405;AVGPOST=0.9872;RSQ=0.9804;ERATE=0.0012;THETA=0.0005;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 32920550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.713;LDAF=0.0129;AVGPOST=0.9952;RSQ=0.8455;ERATE=0.0005;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32920609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.755;LDAF=0.0807;AVGPOST=0.9785;RSQ=0.8916;ERATE=0.0007;THETA=0.0004;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 32920632 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32920685 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.6851;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32920698 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32920706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0003;THETA=0.0015;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 32920726 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8616;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32920897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0016;AVGPOST=0.9983;RSQ=0.6300;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32920951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0217;AVGPOST=0.9987;RSQ=0.9757;ERATE=0.0003;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32920974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4571;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32921015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32921050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4459;AVGPOST=0.9971;RSQ=0.9946;ERATE=0.0005;THETA=0.0003;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 32921288 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.984;LDAF=0.4408;AVGPOST=0.9909;RSQ=0.9854;ERATE=0.0007;THETA=0.0003;AC=968;AN=2184 GT:DS:GL:BD 0.44322345 0 1 32921347 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32921462 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8777;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32921519 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9996;RSQ=0.9482;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32921556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8541;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32921730 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9303;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32921754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.720;LDAF=0.0088;AVGPOST=0.9967;RSQ=0.8389;ERATE=0.0008;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32921761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7583;ERATE=0.0003;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32921770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32921848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9988;RSQ=0.9722;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32921861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9690;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32921952 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6159;AVGPOST=0.9952;RSQ=0.9927;ERATE=0.0019;THETA=0.0006;AC=1348;AN=2184 GT:DS:GL:BD 0.61721611 1 1 32922091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7152;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32922102 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32922189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32922217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32922246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9079;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32922277 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5764;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32922300 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0043;AVGPOST=0.9961;RSQ=0.6170;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32922345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4882;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32922400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.5689;ERATE=0.0012;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32922484 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0243;AVGPOST=0.9983;RSQ=0.9704;ERATE=0.0003;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32922513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9678;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32922756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0540;AVGPOST=0.9984;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 32922885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0267;AVGPOST=0.9979;RSQ=0.9687;ERATE=0.0004;THETA=0.0015;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32922903 . TGAG T 149 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32922951 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0353;AVGPOST=0.9984;RSQ=0.9827;ERATE=0.0004;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 32922961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0098;AVGPOST=0.9967;RSQ=0.8567;ERATE=0.0005;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32923000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.669;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4664;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32923230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.859;LDAF=0.0168;AVGPOST=0.9964;RSQ=0.9135;ERATE=0.0005;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32923246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32923424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9135;ERATE=0.0003;THETA=0.0068;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32923455 . TGA T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5547;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32923495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.883;LDAF=0.0315;AVGPOST=0.9931;RSQ=0.9100;ERATE=0.0008;THETA=0.0007;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32923529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.5682;AVGPOST=0.9899;RSQ=0.9858;ERATE=0.0005;THETA=0.0006;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 32923534 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4112;AVGPOST=0.9923;RSQ=0.9895;ERATE=0.0007;THETA=0.0007;AC=896;AN=2184 GT:DS:GL:BD 0.41025642 0 1 32923743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6769;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32923826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9197;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32923926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32923995 . A AT 967 PASS INDEL;BAVGPOST=0.998;BRSQ=0.821;LDAF=0.0058;AVGPOST=0.9984;RSQ=0.8697;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32924059 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.6407;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32924079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32924141 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.780;LDAF=0.0119;AVGPOST=0.9960;RSQ=0.8657;ERATE=0.0007;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32924155 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0395;AVGPOST=0.9992;RSQ=0.9919;ERATE=0.0003;THETA=0.0007;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32924295 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4177;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32924304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.808;LDAF=0.0194;AVGPOST=0.9937;RSQ=0.8658;ERATE=0.0005;THETA=0.0008;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32924349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=0.9984;RSQ=0.9179;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32924433 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0051;AVGPOST=0.9976;RSQ=0.8435;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32924473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.282;LDAF=0.1590;AVGPOST=0.7899;RSQ=0.3271;ERATE=0.0291;THETA=0.0011;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 32924606 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.812;BRSQ=0.272;LDAF=0.2075;AVGPOST=0.7529;RSQ=0.3458;ERATE=0.0378;THETA=0.0007;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 32924614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.284;LDAF=0.0308;AVGPOST=0.9576;RSQ=0.4121;ERATE=0.0029;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32924648 . T TC 164 PASS INDEL;BAVGPOST=0.897;BRSQ=0.134;LDAF=0.1065;AVGPOST=0.8395;RSQ=0.2969;ERATE=0.0128;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32924652 . T TC 39 PASS INDEL;BAVGPOST=0.530;BRSQ=0.012;LDAF=0.1067;AVGPOST=0.8430;RSQ=0.3241;ERATE=0.0046;THETA=0.0007;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 32924773 . C CT 33 PASS INDEL;BAVGPOST=0.609;BRSQ=0.007;LDAF=0.1685;AVGPOST=0.7471;RSQ=0.2418;ERATE=0.0110;THETA=0.0004;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 32924776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.918;BRSQ=0.137;LDAF=0.0915;AVGPOST=0.8656;RSQ=0.3434;ERATE=0.0070;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 32924787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.196;LDAF=0.0918;AVGPOST=0.8591;RSQ=0.3229;ERATE=0.0101;THETA=0.0006;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 32924873 . CT C 3127 PASS INDEL;BAVGPOST=0.902;BRSQ=0.639;LDAF=0.1486;AVGPOST=0.9258;RSQ=0.7833;ERATE=0.0027;THETA=0.0009;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 32925085 . TG T 121 PASS INDEL;BAVGPOST=0.954;BRSQ=0.391;LDAF=0.0378;AVGPOST=0.9626;RSQ=0.5986;ERATE=0.0020;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32925093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.367;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5045;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32925369 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32925421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5448;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=1189;AN=2184 GT:DS:GL:BD 0.54441392 1 1 32925534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7324;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32925629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.819;LDAF=0.0162;AVGPOST=0.9945;RSQ=0.8650;ERATE=0.0004;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32925652 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9792;ERATE=0.0004;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32925771 rs55913237 C CA 2223 PASS INDEL;BAVGPOST=0.574;BRSQ=0.224;LDAF=0.6260;AVGPOST=0.7653;RSQ=0.6442;ERATE=0.0027;THETA=0.0008;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 32925831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4881;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32925968 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7439;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32926024 . A AT 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4210;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32926043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.8075;ERATE=0.0006;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32926188 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8387;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32926216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5255;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32926232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32926330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0396;AVGPOST=0.9992;RSQ=0.9925;ERATE=0.0004;THETA=0.0013;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32926359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0034;AVGPOST=0.9961;RSQ=0.5952;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32926372 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32926426 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32926527 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0061;AVGPOST=0.9961;RSQ=0.7606;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32926533 . TA T 106 PASS INDEL;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6336;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32926545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9518;ERATE=0.0005;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32926601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7722;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32926902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8315;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32926943 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32927012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32927345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32927457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32927573 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7222;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32927574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.7833;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32927578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5247;AVGPOST=0.9953;RSQ=0.9933;ERATE=0.0007;THETA=0.0088;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 32927584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3975;AVGPOST=0.9961;RSQ=0.9951;ERATE=0.0004;THETA=0.0008;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 32927889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32927945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7184;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32928072 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7270;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32928093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32928115 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.6971;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32928125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0049;AVGPOST=0.9963;RSQ=0.7268;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32928135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32928323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6289;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32928398 . A AG 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32928539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1429;AVGPOST=0.9983;RSQ=0.9942;ERATE=0.0007;THETA=0.0005;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 32928578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0087;AVGPOST=0.9973;RSQ=0.8993;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32928597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9234;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32928621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32928626 . C CA 179 PASS INDEL;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6305;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32928642 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.5503;AVGPOST=0.9883;RSQ=0.9835;ERATE=0.0039;THETA=0.0006;AC=1206;AN=2184 GT:DS:GL:BD 0.55219781 1 1 32928652 . CT C 692 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9994;RSQ=0.9619;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32928835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0063;AVGPOST=0.9985;RSQ=0.9167;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32928878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5270;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32928909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0161;AVGPOST=0.9984;RSQ=0.9616;ERATE=0.0004;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32928940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7697;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=1681;AN=2184 GT:DS:GL:BD 0.76968867 1 1 32929099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32929133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32929380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32929551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1431;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 32929661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9859;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32929671 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6352;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32929674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0540;AVGPOST=0.9995;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32929695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6326;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32930030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9991;RSQ=0.9694;ERATE=0.0004;THETA=0.0011;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32930049 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5926;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32930105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0122;AVGPOST=0.9995;RSQ=0.9794;ERATE=0.0004;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 32930129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4967;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32930215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32930264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5548;AVGPOST=0.9967;RSQ=0.9952;ERATE=0.0007;THETA=0.0003;AC=1210;AN=2184 GT:DS:GL:BD 0.55402929 1 1 32930388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9255;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32930389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0054;AVGPOST=0.9965;RSQ=0.7310;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32930393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.5513;AVGPOST=0.9761;RSQ=0.9663;ERATE=0.0041;THETA=0.0005;AC=1205;AN=2184 GT:DS:GL:BD 0.55173993 1 1 32930470 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0197;AVGPOST=0.9985;RSQ=0.9676;ERATE=0.0006;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32930563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6864;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32930610 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1368;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 32930662 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8588;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32930670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32930780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32930798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8853;AVGPOST=0.9983;RSQ=0.9931;ERATE=0.0004;THETA=0.0004;AC=1935;AN=2184 GT:DS:GL:BD 0.88598901 1 1 32930830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0116;AVGPOST=0.9949;RSQ=0.8349;ERATE=0.0005;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32930981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0190;AVGPOST=0.9956;RSQ=0.9277;ERATE=0.0004;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32931024 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0358;AVGPOST=0.9974;RSQ=0.9706;ERATE=0.0006;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 32931111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.541;LDAF=0.0055;AVGPOST=0.9949;RSQ=0.6169;ERATE=0.0006;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32931120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.958;LDAF=0.1422;AVGPOST=0.9887;RSQ=0.9686;ERATE=0.0008;THETA=0.0006;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 32931199 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.978;LDAF=0.1246;AVGPOST=0.9917;RSQ=0.9741;ERATE=0.0013;THETA=0.0006;AC=271;AN=2184 GT:DS:GL:BD 0.12408425 0 1 32931352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8885;AVGPOST=0.9987;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=1942;AN=2184 GT:DS:GL:BD 0.88919413 1 1 32931394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32931439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8620;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32931515 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0041;AVGPOST=0.9994;RSQ=0.9371;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32931634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0670;AVGPOST=0.9986;RSQ=0.9918;ERATE=0.0006;THETA=0.0005;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 32931663 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0157;AVGPOST=0.9985;RSQ=0.9682;ERATE=0.0004;THETA=0.0046;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32931730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32931755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.7214;ERATE=0.0008;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32931818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32931838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7293;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32931846 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0098;AVGPOST=0.9984;RSQ=0.9315;ERATE=0.0004;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32931942 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0065;AVGPOST=0.9977;RSQ=0.8908;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32931960 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1345;AVGPOST=0.9965;RSQ=0.9896;ERATE=0.0017;THETA=0.0027;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 32931976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7919;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32932148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5542;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5927;AVGPOST=0.9962;RSQ=0.9939;ERATE=0.0012;THETA=0.0007;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 32932155 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0112;AVGPOST=0.9990;RSQ=0.9689;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32932207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6239;AVGPOST=0.9953;RSQ=0.9924;ERATE=0.0008;THETA=0.0008;AC=1359;AN=2184 GT:DS:GL:BD 0.62225276 1 1 32932327 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6415;AVGPOST=0.9977;RSQ=0.9957;ERATE=0.0006;THETA=0.0006;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 32932410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9220;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32932512 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932565 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5358;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0006;THETA=0.0004;AC=1169;AN=2184 GT:DS:GL:BD 0.53525639 1 1 32932570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6357;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=1388;AN=2184 GT:DS:GL:BD 0.63553113 1 1 32932679 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6340;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8303;ERATE=0.0012;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32932690 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9647;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32932718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5644;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32932753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32932827 . TC T 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4592;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32933011 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32933033 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5202;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32933301 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8272;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32933363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0032;AVGPOST=0.9985;RSQ=0.8228;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32933404 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4527;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0007;AC=991;AN=2184 GT:DS:GL:BD 0.45375457 0 1 32933412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.684;LDAF=0.0039;AVGPOST=0.9971;RSQ=0.7062;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32933547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0068;AVGPOST=0.9953;RSQ=0.7347;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32933549 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.884;LDAF=0.0260;AVGPOST=0.9904;RSQ=0.8593;ERATE=0.0006;THETA=0.0002;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32933591 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.945;LDAF=0.2383;AVGPOST=0.9873;RSQ=0.9758;ERATE=0.0009;THETA=0.0011;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 32933599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0160;AVGPOST=0.9989;RSQ=0.9730;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 32933623 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4524;AVGPOST=0.9969;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=991;AN=2184 GT:DS:GL:BD 0.45375457 0 1 32933722 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0045;AVGPOST=0.9966;RSQ=0.7219;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32933726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4519;AVGPOST=0.9964;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=991;AN=2184 GT:DS:GL:BD 0.45375457 0 1 32933751 . GA G 147 PASS INDEL;BAVGPOST=0.971;BRSQ=0.451;LDAF=0.0421;AVGPOST=0.9439;RSQ=0.4534;ERATE=0.0135;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32933774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.737;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8625;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32933837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9097;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32933864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0592;AVGPOST=0.9993;RSQ=0.9954;ERATE=0.0003;THETA=0.0002;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 32933907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9146;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32933942 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0564;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0004;THETA=0.0007;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 32933986 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7143;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32934041 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0205;AVGPOST=0.9994;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32934058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.955;LDAF=0.0143;AVGPOST=0.9975;RSQ=0.9420;ERATE=0.0007;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32934096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6489;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32934339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4814;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934340 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9992;RSQ=0.9467;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32934387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32934435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.698;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8945;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32934463 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934468 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0400;AVGPOST=0.9992;RSQ=0.9911;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32934557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2110;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=462;AN=2184 GT:DS:GL:BD 0.21153846 0 1 32934558 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32934619 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0587;AVGPOST=0.9993;RSQ=0.9952;ERATE=0.0004;THETA=0.0016;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 32934715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32934742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6412;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32934748 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0400;AVGPOST=0.9989;RSQ=0.9879;ERATE=0.0004;THETA=0.0011;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32934767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32934788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8313;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32934797 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32934992 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32935013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9928;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32935023 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5277;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32935095 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32935186 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.555;LDAF=0.0115;AVGPOST=0.9880;RSQ=0.5853;ERATE=0.0012;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32935292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.841;LDAF=0.1067;AVGPOST=0.9940;RSQ=0.9763;ERATE=0.0005;THETA=0.0004;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 32935295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.980;LDAF=0.3147;AVGPOST=0.9862;RSQ=0.9805;ERATE=0.0009;THETA=0.0003;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 32935343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.914;LDAF=0.0392;AVGPOST=0.9947;RSQ=0.9441;ERATE=0.0004;THETA=0.0004;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32935379 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0056;AVGPOST=0.9954;RSQ=0.6453;ERATE=0.0006;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32935401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.864;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.8377;ERATE=0.0006;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32935512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8728;ERATE=0.0004;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32935590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32935591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32935603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6775;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32935647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9777;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32935698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1150;AVGPOST=0.9988;RSQ=0.9953;ERATE=0.0004;THETA=0.0017;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 32935731 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6104;AVGPOST=0.9974;RSQ=0.9963;ERATE=0.0006;THETA=0.0004;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 32935763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0243;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0004;THETA=0.0015;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32935767 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0671;AVGPOST=0.9998;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32935773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6767;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32935836 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32935908 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5969;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32935921 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9994;RSQ=0.9727;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32935922 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6025;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32936050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0735;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 32936160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32936178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32936297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9226;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32936318 . GC G 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6400;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32936332 rs10569707 AAG A 14255 PASS INDEL;BAVGPOST=0.995;BRSQ=0.980;LDAF=0.1103;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0003;THETA=0.0036;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 32936378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32936511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3146;AVGPOST=0.9974;RSQ=0.9949;ERATE=0.0005;THETA=0.0003;AC=688;AN=2184 GT:DS:GL:BD 0.31501833 0 1 32936559 . TA T 3158 PASS INDEL;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0357;AVGPOST=0.9976;RSQ=0.9772;ERATE=0.0003;THETA=0.0017;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 32936564 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0402;AVGPOST=0.9993;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 32936664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0244;AVGPOST=0.9994;RSQ=0.9893;ERATE=0.0003;THETA=0.0001;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 32936720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.933;LDAF=0.0403;AVGPOST=0.9978;RSQ=0.9794;ERATE=0.0003;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32936758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0737;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0009;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 32936773 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32936968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32936970 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6940;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32937025 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7236;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32937095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8432;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32937127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0673;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32937129 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0427;AVGPOST=0.9994;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 32937170 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0420;AVGPOST=0.9982;RSQ=0.9857;ERATE=0.0003;THETA=0.0006;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 32937233 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2025;AVGPOST=0.9979;RSQ=0.9956;ERATE=0.0003;THETA=0.0002;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 32937295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32937305 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.7982;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32937321 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32937481 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1989;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 32937482 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1192;AVGPOST=0.9989;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 32937502 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0448;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32937525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7192;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32937658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7139;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32937662 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6919;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32937721 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0432;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0004;THETA=0.0001;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 32937728 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7963;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32937731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2054;AVGPOST=0.9993;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 32937832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32937850 . TAAC T 329 PASS INDEL;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8572;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32937930 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0671;AVGPOST=0.9990;RSQ=0.9934;ERATE=0.0004;THETA=0.0004;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32937949 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9996;RSQ=0.9734;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32937981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32937999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8522;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32938046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0353;AVGPOST=0.9992;RSQ=0.9907;ERATE=0.0003;THETA=0.0008;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 32938198 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0670;AVGPOST=0.9993;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 32938233 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0098;AVGPOST=0.9978;RSQ=0.9056;ERATE=0.0004;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32938612 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.741;LDAF=0.0661;AVGPOST=0.9756;RSQ=0.8539;ERATE=0.0014;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 32938659 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0035;AVGPOST=0.9964;RSQ=0.5804;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32938668 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.740;LDAF=0.0656;AVGPOST=0.9781;RSQ=0.8658;ERATE=0.0008;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 32938669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.767;LDAF=0.0208;AVGPOST=0.9909;RSQ=0.8391;ERATE=0.0007;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32938674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.609;LDAF=0.0095;AVGPOST=0.9932;RSQ=0.7123;ERATE=0.0007;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32938679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.863;BRSQ=0.717;LDAF=0.2822;AVGPOST=0.9064;RSQ=0.8443;ERATE=0.0066;THETA=0.0004;AC=635;AN=2184 GT:DS:GL:BD 0.29075092 0 1 32938680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.448;LDAF=0.0233;AVGPOST=0.9826;RSQ=0.7242;ERATE=0.0011;THETA=0.0028;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32938686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.319;LDAF=0.0459;AVGPOST=0.9585;RSQ=0.6321;ERATE=0.0036;THETA=0.0018;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 32938690 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.517;LDAF=0.0683;AVGPOST=0.9324;RSQ=0.6118;ERATE=0.0053;THETA=0.0018;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 32938710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.452;LDAF=0.0629;AVGPOST=0.9333;RSQ=0.5823;ERATE=0.0068;THETA=0.0008;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 32938736 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.605;LDAF=0.0970;AVGPOST=0.9443;RSQ=0.7950;ERATE=0.0008;THETA=0.0019;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 32938773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.912;BRSQ=0.666;LDAF=0.1338;AVGPOST=0.9391;RSQ=0.8211;ERATE=0.0005;THETA=0.0005;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 32938780 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0042;AVGPOST=0.9976;RSQ=0.7363;ERATE=0.0006;THETA=0.0084;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32938796 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.900;LDAF=0.0678;AVGPOST=0.9830;RSQ=0.9019;ERATE=0.0010;THETA=0.0110;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 32938804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0296;AVGPOST=0.9964;RSQ=0.9496;ERATE=0.0007;THETA=0.0015;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32938948 . CT C 239 PASS INDEL;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0055;AVGPOST=0.9972;RSQ=0.8007;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32938955 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.8989;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32938987 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.861;LDAF=0.0073;AVGPOST=0.9968;RSQ=0.8369;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32939132 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0369;AVGPOST=0.9959;RSQ=0.9587;ERATE=0.0005;THETA=0.0061;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 32939147 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.955;LDAF=0.1399;AVGPOST=0.9782;RSQ=0.9343;ERATE=0.0012;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 32939283 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0290;AVGPOST=0.9968;RSQ=0.9597;ERATE=0.0005;THETA=0.0043;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32939291 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.933;LDAF=0.1437;AVGPOST=0.9716;RSQ=0.9185;ERATE=0.0044;THETA=0.0005;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 32939416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.359;LDAF=0.0039;AVGPOST=0.9933;RSQ=0.3236;ERATE=0.0012;THETA=0.0022;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32939448 rs113338290 GA G 949 PASS INDEL;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0224;AVGPOST=0.9946;RSQ=0.8984;ERATE=0.0006;THETA=0.0030;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32939471 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0303;AVGPOST=0.9777;RSQ=0.6771;ERATE=0.0020;THETA=0.0027;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32939570 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.660;LDAF=0.0285;AVGPOST=0.9777;RSQ=0.6775;ERATE=0.0024;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 32939771 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.835;LDAF=0.3309;AVGPOST=0.9354;RSQ=0.8883;ERATE=0.0048;THETA=0.0009;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 32939831 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.871;LDAF=0.0339;AVGPOST=0.9897;RSQ=0.8612;ERATE=0.0015;THETA=0.0013;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32940150 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0043;AVGPOST=0.9950;RSQ=0.4986;ERATE=0.0008;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32940525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0177;AVGPOST=0.9955;RSQ=0.9016;ERATE=0.0007;THETA=0.0085;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32940604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.900;LDAF=0.0427;AVGPOST=0.9948;RSQ=0.9459;ERATE=0.0004;THETA=0.0012;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 32940808 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0028;AVGPOST=0.9966;RSQ=0.5021;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32940875 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5316;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32940952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.3881;AVGPOST=0.9739;RSQ=0.9647;ERATE=0.0061;THETA=0.0058;AC=851;AN=2184 GT:DS:GL:BD 0.38965201 0 1 32940971 . CA C 1752 PASS INDEL;BAVGPOST=0.990;BRSQ=0.730;LDAF=0.0167;AVGPOST=0.9917;RSQ=0.7888;ERATE=0.0005;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 32941085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7289;ERATE=0.0003;THETA=0.0064;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32941201 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.935;LDAF=0.0850;AVGPOST=0.9900;RSQ=0.9524;ERATE=0.0012;THETA=0.0006;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 32941262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.909;LDAF=0.3896;AVGPOST=0.9164;RSQ=0.8762;ERATE=0.0201;THETA=0.0006;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 32941326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.9012;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32941337 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0240;AVGPOST=0.9928;RSQ=0.8934;ERATE=0.0003;THETA=0.0021;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32941343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0061;AVGPOST=0.9976;RSQ=0.8378;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32941421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.963;LDAF=0.0402;AVGPOST=0.9965;RSQ=0.9659;ERATE=0.0007;THETA=0.0046;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 32941455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32941456 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9121;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32941785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5664;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32941831 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32941887 . G GA 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5198;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32941947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0287;AVGPOST=0.9991;RSQ=0.9867;ERATE=0.0004;THETA=0.0040;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32941963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0058;AVGPOST=0.9990;RSQ=0.9284;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32942099 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0556;AVGPOST=0.9992;RSQ=0.9939;ERATE=0.0003;THETA=0.0007;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 32942165 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8653;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32942255 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0556;AVGPOST=0.9989;RSQ=0.9915;ERATE=0.0005;THETA=0.0007;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 32942282 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0286;AVGPOST=0.9993;RSQ=0.9895;ERATE=0.0004;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32942287 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0055;AVGPOST=0.9997;RSQ=0.9773;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32942372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.906;LDAF=0.0736;AVGPOST=0.9802;RSQ=0.8824;ERATE=0.0100;THETA=0.0043;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 32942472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0566;AVGPOST=0.9968;RSQ=0.9782;ERATE=0.0005;THETA=0.0008;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 32942660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0004;THETA=0.0038;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32942749 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0422;AVGPOST=0.9976;RSQ=0.9767;ERATE=0.0004;THETA=0.0006;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 32942764 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.960;LDAF=0.0438;AVGPOST=0.9971;RSQ=0.9732;ERATE=0.0004;THETA=0.0006;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 32942765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0083;AVGPOST=0.9980;RSQ=0.9089;ERATE=0.0005;THETA=0.0057;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32942767 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4182;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32942872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0273;AVGPOST=0.9971;RSQ=0.9588;ERATE=0.0004;THETA=0.0031;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 32942944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6132;ERATE=0.0008;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32943020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.672;LDAF=0.0061;AVGPOST=0.9953;RSQ=0.7178;ERATE=0.0006;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32943050 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.929;LDAF=0.0480;AVGPOST=0.9958;RSQ=0.9674;ERATE=0.0003;THETA=0.0010;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 32943057 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.964;LDAF=0.0450;AVGPOST=0.9985;RSQ=0.9859;ERATE=0.0004;THETA=0.0008;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 32943160 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0543;AVGPOST=0.9971;RSQ=0.9789;ERATE=0.0003;THETA=0.0006;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 32943377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0667;AVGPOST=0.9963;RSQ=0.9783;ERATE=0.0004;THETA=0.0005;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 32943383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6944;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32943440 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0105;AVGPOST=0.9989;RSQ=0.9518;ERATE=0.0005;THETA=0.0028;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32943477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0511;AVGPOST=0.9990;RSQ=0.9913;ERATE=0.0004;THETA=0.0014;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 32943523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9506;ERATE=0.0003;THETA=0.0045;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32943582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.4540;ERATE=0.0004;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32943592 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0087;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32943774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.0072;AVGPOST=0.9979;RSQ=0.8897;ERATE=0.0006;THETA=0.0223;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32943784 . TTGAC T 345 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7353;ERATE=0.0005;THETA=0.0086;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32943799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8392;ERATE=0.0003;THETA=0.0220;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32943870 . C CT 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0375;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32943983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8298;ERATE=0.0004;THETA=0.0328;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32944184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.968;LDAF=0.1401;AVGPOST=0.9856;RSQ=0.9641;ERATE=0.0080;THETA=0.0207;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 32944205 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.924;LDAF=0.3638;AVGPOST=0.9560;RSQ=0.9306;ERATE=0.0106;THETA=0.0145;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 32944257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0325;AVGPOST=0.9983;RSQ=0.9785;ERATE=0.0004;THETA=0.0200;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32944268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0003;THETA=0.0261;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32944334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7239;ERATE=0.0008;THETA=0.0129;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32944335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.950;LDAF=0.8952;AVGPOST=0.9867;RSQ=0.9492;ERATE=0.0008;THETA=0.0171;AC=1958;AN=2184 GT:DS:GL:BD 0.89652014 1 1 32944377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7552;ERATE=0.0004;THETA=0.0096;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32944399 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8537;ERATE=0.0004;THETA=0.0070;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32944407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0285;AVGPOST=0.9984;RSQ=0.9757;ERATE=0.0003;THETA=0.0059;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32944428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944429 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.949;LDAF=0.0283;AVGPOST=0.9984;RSQ=0.9767;ERATE=0.0005;THETA=0.0058;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32944470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.947;LDAF=0.0750;AVGPOST=0.9909;RSQ=0.9562;ERATE=0.0007;THETA=0.0040;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 32944476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.978;LDAF=0.5810;AVGPOST=0.9819;RSQ=0.9783;ERATE=0.0007;THETA=0.0059;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 32944489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9426;ERATE=0.0004;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32944510 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944535 rs58330424 TA T 3960 PASS INDEL;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.0229;AVGPOST=0.9980;RSQ=0.9687;ERATE=0.0003;THETA=0.0082;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32944599 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.966;LDAF=0.7217;AVGPOST=0.9831;RSQ=0.9705;ERATE=0.0012;THETA=0.0048;AC=1575;AN=2184 GT:DS:GL:BD 0.72115386 1 1 32944637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0004;THETA=0.0085;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0332;AVGPOST=0.9984;RSQ=0.9807;ERATE=0.0003;THETA=0.0107;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32944660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8692;ERATE=0.0003;THETA=0.0052;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32944672 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9555;ERATE=0.0003;THETA=0.0096;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32944704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32944706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9996;RSQ=0.9879;ERATE=0.0003;THETA=0.0053;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32944747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0003;THETA=0.0121;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32944748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6846;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944802 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.970;LDAF=0.5335;AVGPOST=0.9770;RSQ=0.9674;ERATE=0.0006;THETA=0.0010;AC=1162;AN=2184 GT:DS:GL:BD 0.53205127 1 1 32944821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7895;ERATE=0.0009;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32944832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32944840 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945131 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32945132 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9427;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32945143 rs34678055 G GC 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945149 . CA C 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32945162 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0029;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32945191 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0024;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32945324 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.967;LDAF=0.5508;AVGPOST=0.9830;RSQ=0.9778;ERATE=0.0007;THETA=0.0011;AC=1205;AN=2184 GT:DS:GL:BD 0.55173993 1 1 32945343 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9826;ERATE=0.0004;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32945347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32945474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945543 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945602 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.5095;AVGPOST=0.9817;RSQ=0.9779;ERATE=0.0114;THETA=0.0009;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 32945745 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.978;LDAF=0.5059;AVGPOST=0.9799;RSQ=0.9740;ERATE=0.0154;THETA=0.0076;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 32945790 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0177;AVGPOST=0.9998;RSQ=0.9957;ERATE=0.0003;THETA=0.0015;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32945791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0020;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32945796 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32945904 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32945956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9762;ERATE=0.0003;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32945964 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0043;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32946035 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32946122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0110;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32946177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5772;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0004;THETA=0.0005;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32946242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9441;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32946297 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6114;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 32946359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5774;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0004;THETA=0.0008;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 32946398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8059;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32946408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32946424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1614;AVGPOST=0.9964;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 32946425 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0312;AVGPOST=0.9995;RSQ=0.9927;ERATE=0.0004;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 32946458 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8312;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32946463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5471;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32946616 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.4469;AVGPOST=0.9974;RSQ=0.9965;ERATE=0.0005;THETA=0.0007;AC=973;AN=2184 GT:DS:GL:BD 0.44551283 0 1 32946719 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5772;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0004;THETA=0.0006;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32946784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.805;LDAF=0.0113;AVGPOST=0.9984;RSQ=0.9410;ERATE=0.0004;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32946794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32946851 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5773;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0008;THETA=0.0005;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32946918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8204;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32947001 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0081;AVGPOST=0.9977;RSQ=0.8792;ERATE=0.0004;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32947027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0072;AVGPOST=0.9986;RSQ=0.9223;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32947041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32947064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5766;AVGPOST=0.9994;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 32947077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0070;AVGPOST=0.9994;RSQ=0.9645;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32947178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5774;AVGPOST=0.9972;RSQ=0.9954;ERATE=0.0009;THETA=0.0005;AC=1260;AN=2184 GT:DS:GL:BD 0.57692307 1 1 32947282 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.5762;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0006;THETA=0.0002;AC=1257;AN=2184 GT:DS:GL:BD 0.57554942 1 1 32947392 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32947398 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5755;AVGPOST=0.9967;RSQ=0.9944;ERATE=0.0009;THETA=0.0006;AC=1255;AN=2184 GT:DS:GL:BD 0.57463372 1 1 32947468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8538;ERATE=0.0004;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32947770 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5802;AVGPOST=0.9960;RSQ=0.9932;ERATE=0.0009;THETA=0.0005;AC=1266;AN=2184 GT:DS:GL:BD 0.57967031 1 1 32947940 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5782;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=1262;AN=2184 GT:DS:GL:BD 0.57783884 1 1 32947999 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5773;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0005;THETA=0.0004;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32948039 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9522;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32948042 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32948044 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.8673;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32948185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0291;AVGPOST=0.9990;RSQ=0.9842;ERATE=0.0004;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 32948294 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0261;AVGPOST=0.9988;RSQ=0.9816;ERATE=0.0004;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32948386 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9486;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32948425 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9663;ERATE=0.0004;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32948457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.774;LDAF=0.0051;AVGPOST=0.9961;RSQ=0.6849;ERATE=0.0013;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32948568 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.7009;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32948609 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.969;LDAF=0.5744;AVGPOST=0.9919;RSQ=0.9875;ERATE=0.0005;THETA=0.0005;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 32948653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.969;LDAF=0.5744;AVGPOST=0.9918;RSQ=0.9873;ERATE=0.0004;THETA=0.0003;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 32948655 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5595;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32948699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5975;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32948724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5760;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0007;THETA=0.0008;AC=1256;AN=2184 GT:DS:GL:BD 0.57509160 1 1 32948743 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.309;LDAF=0.0418;AVGPOST=0.9588;RSQ=0.6465;ERATE=0.0010;THETA=0.0071;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 32951297 . CAT C 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0067;AVGPOST=0.9894;RSQ=0.3680;ERATE=0.0009;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32955626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.863;LDAF=0.0120;AVGPOST=0.9952;RSQ=0.8309;ERATE=0.0004;THETA=0.0060;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 32955642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.661;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0005;THETA=0.0252;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32959035 . GA G 100 PASS INDEL;BAVGPOST=0.813;BRSQ=0.058;LDAF=0.1611;AVGPOST=0.7458;RSQ=0.2278;ERATE=0.0097;THETA=0.0074;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 32967569 . AT A 1888 PASS INDEL;BAVGPOST=0.786;BRSQ=0.265;LDAF=0.2009;AVGPOST=0.7697;RSQ=0.4405;ERATE=0.0080;THETA=0.0091;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 32971056 . CACAG C 2261 PASS INDEL;BAVGPOST=0.958;BRSQ=0.444;LDAF=0.0442;AVGPOST=0.9528;RSQ=0.5270;ERATE=0.0064;THETA=0.0053;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32971082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32973077 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.738;LDAF=0.0236;AVGPOST=0.9860;RSQ=0.7776;ERATE=0.0007;THETA=0.0017;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32973140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.854;LDAF=0.1337;AVGPOST=0.9682;RSQ=0.8975;ERATE=0.0009;THETA=0.0056;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 32973246 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.615;BRSQ=0.064;LDAF=0.2743;AVGPOST=0.6502;RSQ=0.2829;ERATE=0.0233;THETA=0.0025;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 32974630 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6098;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32974653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5646;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32974763 . AC A 700 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0069;AVGPOST=0.9996;RSQ=0.9751;ERATE=0.0003;THETA=0.0024;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32974801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32974937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4558;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32974968 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32975063 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32975130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8397;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32975253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8142;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32975284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32975377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8130;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32975378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32975496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9584;ERATE=0.0004;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32975497 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9249;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32975541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32975603 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5605;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32975770 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8620;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32975971 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8210;AVGPOST=0.9983;RSQ=0.9961;ERATE=0.0004;THETA=0.0008;AC=1794;AN=2184 GT:DS:GL:BD 0.82142860 1 1 32976011 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32976052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7948;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32976291 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32976311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32976320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32976493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0049;AVGPOST=0.9983;RSQ=0.8490;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32976503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2217;AVGPOST=0.9947;RSQ=0.9861;ERATE=0.0006;THETA=0.0011;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 32976522 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0032;AVGPOST=0.9946;RSQ=0.3357;ERATE=0.0007;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32976606 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.637;LDAF=0.0081;AVGPOST=0.9984;RSQ=0.9141;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32976611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.636;LDAF=0.0082;AVGPOST=0.9915;RSQ=0.5898;ERATE=0.0008;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32976629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4064;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32976637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0151;AVGPOST=0.9966;RSQ=0.9052;ERATE=0.0006;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32976681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7602;ERATE=0.0005;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32976726 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0078;AVGPOST=0.9930;RSQ=0.6594;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32976785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.932;LDAF=0.7789;AVGPOST=0.9259;RSQ=0.8605;ERATE=0.0091;THETA=0.0004;AC=1740;AN=2184 GT:DS:GL:BD 0.79670328 1 1 32976787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5194;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32977242 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0152;AVGPOST=0.9987;RSQ=0.9664;ERATE=0.0004;THETA=0.0011;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32977284 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8057;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32977301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32977366 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8581;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32977547 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32977550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32977602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32977700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9988;RSQ=0.4721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32977708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0069;AVGPOST=0.9991;RSQ=0.9422;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32977760 . A AG 101 PASS INDEL;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0093;AVGPOST=0.9972;RSQ=0.8871;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32977795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0092;AVGPOST=0.9968;RSQ=0.8851;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32977796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9185;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32977883 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.4169;AVGPOST=0.9899;RSQ=0.9845;ERATE=0.0007;THETA=0.0007;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 32977993 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7900;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32978046 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5719;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32978081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7973;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32978170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.576;LDAF=0.0021;AVGPOST=0.9982;RSQ=0.6629;ERATE=0.0005;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32978376 rs56231009 A AT 333 PASS INDEL;BAVGPOST=0.974;BRSQ=0.544;LDAF=0.0519;AVGPOST=0.9384;RSQ=0.4955;ERATE=0.0178;THETA=0.0026;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32978426 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8175;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32978432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32978519 . CTAACT C 549 PASS INDEL;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8610;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32978719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6353;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32978873 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32978881 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6422;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32978914 . TTC T 250 PASS INDEL;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0043;AVGPOST=0.9969;RSQ=0.7064;ERATE=0.0007;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32978948 . CTG C 952 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9989;RSQ=0.9439;ERATE=0.0006;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32979049 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8027;AVGPOST=0.9937;RSQ=0.9884;ERATE=0.0004;THETA=0.0008;AC=1753;AN=2184 GT:DS:GL:BD 0.80265570 1 1 32979088 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32979094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4208;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32979107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.957;LDAF=0.1577;AVGPOST=0.9865;RSQ=0.9583;ERATE=0.0006;THETA=0.0007;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 32979207 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9259;ERATE=0.0005;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32979238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0067;AVGPOST=0.9982;RSQ=0.8994;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32979301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1981;AVGPOST=0.9884;RSQ=0.9721;ERATE=0.0007;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 32979322 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5505;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32979450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.7798;ERATE=0.0004;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32979485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6674;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32979582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0088;AVGPOST=0.9980;RSQ=0.9256;ERATE=0.0005;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32979600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.8630;AVGPOST=0.9820;RSQ=0.9416;ERATE=0.0004;THETA=0.0018;AC=1890;AN=2184 GT:DS:GL:BD 0.86538464 1 1 32979638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0040;AVGPOST=0.9985;RSQ=0.8570;ERATE=0.0003;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32979695 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32979705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0627;AVGPOST=0.9988;RSQ=0.9944;ERATE=0.0005;THETA=0.0012;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 32979737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32979753 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6488;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32979758 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3903;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32979781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32979808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32979830 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0151;AVGPOST=0.9991;RSQ=0.9776;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32979869 . A AT 276 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6916;ERATE=0.0010;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32979908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32980313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32980327 . T TTTCC 102 PASS INDEL;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.4974;ERATE=0.0008;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32980492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32980653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1298;AVGPOST=0.9974;RSQ=0.9905;ERATE=0.0004;THETA=0.0011;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 32980669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9275;ERATE=0.0004;THETA=0.0012;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32980784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0057;AVGPOST=0.9956;RSQ=0.6773;ERATE=0.0007;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32980795 . AC A 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0035;AVGPOST=0.9958;RSQ=0.5643;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32980801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0509;AVGPOST=0.9984;RSQ=0.9878;ERATE=0.0004;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32980890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8666;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32981031 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.786;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7464;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32981083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2297;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0003;THETA=0.0010;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 32981087 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0657;AVGPOST=0.9971;RSQ=0.9861;ERATE=0.0004;THETA=0.0006;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 32981138 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5986;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32981217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.879;LDAF=0.0213;AVGPOST=0.9953;RSQ=0.9114;ERATE=0.0006;THETA=0.0016;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32981235 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.7739;ERATE=0.0010;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32981281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.581;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6201;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32981371 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6722;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32981393 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0654;AVGPOST=0.9994;RSQ=0.9962;ERATE=0.0004;THETA=0.0013;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 32981432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9197;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32981502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8319;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32981524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0343;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0007;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32981565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.988;LDAF=0.5217;AVGPOST=0.9778;RSQ=0.9728;ERATE=0.0007;THETA=0.0007;AC=1135;AN=2184 GT:DS:GL:BD 0.51968867 1 1 32981566 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.9051;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32981607 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0503;AVGPOST=0.9988;RSQ=0.9921;ERATE=0.0004;THETA=0.0007;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 32981655 . A ATG 26 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4714;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32981686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8689;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32981736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4974;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32981773 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0060;AVGPOST=0.9985;RSQ=0.9022;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32981774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6124;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32982043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32982122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8649;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32982127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.757;LDAF=0.0086;AVGPOST=0.9969;RSQ=0.8670;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 32982144 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0184;AVGPOST=0.9992;RSQ=0.9837;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32982145 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0105;AVGPOST=0.9970;RSQ=0.8744;ERATE=0.0008;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32982213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8097;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32982377 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.792;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8246;ERATE=0.0010;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32982396 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.889;LDAF=0.0075;AVGPOST=0.9977;RSQ=0.8648;ERATE=0.0007;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32982498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0346;AVGPOST=0.9991;RSQ=0.9892;ERATE=0.0004;THETA=0.0012;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32982596 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0029;AVGPOST=0.9966;RSQ=0.4896;ERATE=0.0010;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32982613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0240;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0003;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32982687 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9595;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32982724 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9314;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32982759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32982765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7910;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32982840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9977;RSQ=0.9104;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32982879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0240;AVGPOST=0.9995;RSQ=0.9897;ERATE=0.0004;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32982959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32983014 . G GA 224 PASS INDEL;BAVGPOST=0.998;BRSQ=0.699;LDAF=0.0046;AVGPOST=0.9939;RSQ=0.4880;ERATE=0.0010;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32983104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2387;AVGPOST=0.9977;RSQ=0.9948;ERATE=0.0005;THETA=0.0006;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 32983115 rs60158887 C CT 6655 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0239;AVGPOST=0.9994;RSQ=0.9876;ERATE=0.0004;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32983128 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32983178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9532;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32983187 . CA C 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32983262 . TCCATCCATCCAC T 2708 PASS INDEL;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0085;AVGPOST=0.9979;RSQ=0.9142;ERATE=0.0004;THETA=0.0018;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32983291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0135;AVGPOST=0.9973;RSQ=0.9201;ERATE=0.0004;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 32983337 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32983462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6900;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32983503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9571;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32983552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32983685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7945;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32983729 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7270;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32983799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0627;AVGPOST=0.9989;RSQ=0.9946;ERATE=0.0004;THETA=0.0007;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 32983870 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9476;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32984003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0110;AVGPOST=0.9989;RSQ=0.9525;ERATE=0.0004;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32984081 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.523;LDAF=0.0126;AVGPOST=0.9838;RSQ=0.4834;ERATE=0.0039;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32984103 . AG A 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9977;RSQ=0.2994;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32984113 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6853;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32984148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.678;LDAF=0.0058;AVGPOST=0.9973;RSQ=0.8160;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32984186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0134;AVGPOST=0.9987;RSQ=0.9637;ERATE=0.0004;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 32984204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32984247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0077;AVGPOST=0.9970;RSQ=0.8400;ERATE=0.0004;THETA=0.0014;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32984292 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32984434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32984480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0499;AVGPOST=0.9984;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 32984502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0111;AVGPOST=0.9988;RSQ=0.9503;ERATE=0.0004;THETA=0.0024;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 32984591 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8156;ERATE=0.0003;THETA=0.0053;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32984604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7647;ERATE=0.0004;THETA=0.0152;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32984605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2843;AVGPOST=0.9938;RSQ=0.9908;ERATE=0.0003;THETA=0.0006;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 32984642 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.2811;AVGPOST=0.9935;RSQ=0.9901;ERATE=0.0004;THETA=0.0020;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 32984648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2000;AVGPOST=0.9963;RSQ=0.9913;ERATE=0.0004;THETA=0.0006;AC=438;AN=2184 GT:DS:GL:BD 0.20054945 0 1 32984691 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7651;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32984875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7829;ERATE=0.0004;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32984920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0946;AVGPOST=0.9963;RSQ=0.9864;ERATE=0.0004;THETA=0.0049;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 32984978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8842;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32985017 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0939;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0004;THETA=0.0015;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 32985157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0263;AVGPOST=0.9984;RSQ=0.9781;ERATE=0.0003;THETA=0.0025;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 32985229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32985294 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0679;AVGPOST=0.9965;RSQ=0.9791;ERATE=0.0005;THETA=0.0008;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 32985298 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.984;LDAF=0.1654;AVGPOST=0.9963;RSQ=0.9898;ERATE=0.0004;THETA=0.0011;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 32985336 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6088;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32985351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9231;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32985365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32985458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32985666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0102;AVGPOST=0.9975;RSQ=0.9052;ERATE=0.0003;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32985673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.1864;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0004;THETA=0.0007;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 32985678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0298;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32985713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0126;AVGPOST=0.9968;RSQ=0.8843;ERATE=0.0015;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32985729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0205;AVGPOST=0.9986;RSQ=0.9728;ERATE=0.0004;THETA=0.0010;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 32985861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0041;AVGPOST=0.9975;RSQ=0.8033;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32985867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8567;ERATE=0.0003;THETA=0.0040;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32985890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3949;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32985906 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0065;AVGPOST=0.9976;RSQ=0.8498;ERATE=0.0006;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32985994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0293;AVGPOST=0.9993;RSQ=0.9900;ERATE=0.0004;THETA=0.0010;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 32986141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986147 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9419;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32986151 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986170 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9448;ERATE=0.0004;THETA=0.0024;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32986194 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8314;ERATE=0.0005;THETA=0.0043;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32986206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6718;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32986229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2697;AVGPOST=0.9919;RSQ=0.9850;ERATE=0.0004;THETA=0.0012;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 32986273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.3740;AVGPOST=0.9902;RSQ=0.9843;ERATE=0.0007;THETA=0.0004;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 32986396 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0169;AVGPOST=0.9981;RSQ=0.9625;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 32986498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0721;AVGPOST=0.9976;RSQ=0.9840;ERATE=0.0005;THETA=0.0009;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 32986571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0061;AVGPOST=0.9991;RSQ=0.9315;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32986595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0190;AVGPOST=0.9994;RSQ=0.9871;ERATE=0.0005;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32986723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9994;RSQ=0.9816;ERATE=0.0004;THETA=0.0014;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 32986742 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.3709;AVGPOST=0.9894;RSQ=0.9829;ERATE=0.0011;THETA=0.0006;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 32986752 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32986995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7100;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32987151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.643;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5541;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32987172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6919;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32987203 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32987326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32987360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0894;AVGPOST=0.9970;RSQ=0.9871;ERATE=0.0003;THETA=0.0003;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 32987390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32987414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6796;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32987439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0049;AVGPOST=0.9974;RSQ=0.7980;ERATE=0.0006;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32987467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0201;AVGPOST=0.9984;RSQ=0.9722;ERATE=0.0004;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32987532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.2670;AVGPOST=0.9850;RSQ=0.9747;ERATE=0.0005;THETA=0.0004;AC=585;AN=2184 GT:DS:GL:BD 0.26785713 0 1 32987537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9010;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32987556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9729;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32987674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0055;AVGPOST=0.9959;RSQ=0.7134;ERATE=0.0012;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32987775 . GA G 57 PASS INDEL;BAVGPOST=0.998;BRSQ=0.826;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5071;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32987794 . G GA 1669 PASS INDEL;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0260;AVGPOST=0.9975;RSQ=0.9643;ERATE=0.0006;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 32987796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5018;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32987801 . GGAGAGGGAGAA G 4354 PASS INDEL;BAVGPOST=0.973;BRSQ=0.837;LDAF=0.0926;AVGPOST=0.9851;RSQ=0.9294;ERATE=0.0011;THETA=0.0036;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 32987855 . GGA G 921 PASS INDEL;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0125;AVGPOST=0.9967;RSQ=0.9066;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32987929 . GAGA G 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.2661;ERATE=0.0008;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32987966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4251;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32988124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.941;LDAF=0.0890;AVGPOST=0.9910;RSQ=0.9609;ERATE=0.0004;THETA=0.0028;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 32988196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9221;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32988329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.1569;AVGPOST=0.9972;RSQ=0.9912;ERATE=0.0004;THETA=0.0057;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 32988367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.920;LDAF=0.0110;AVGPOST=0.9980;RSQ=0.9293;ERATE=0.0003;THETA=0.0013;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32988386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.795;LDAF=0.0266;AVGPOST=0.9890;RSQ=0.8297;ERATE=0.0005;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 32988547 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6529;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32988549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0049;AVGPOST=0.9980;RSQ=0.8324;ERATE=0.0004;THETA=0.0029;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32988602 rs67201165 TC T 19564 PASS INDEL;BAVGPOST=0.971;BRSQ=0.955;LDAF=0.5626;AVGPOST=0.9449;RSQ=0.9231;ERATE=0.0084;THETA=0.0018;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 32988774 rs59472098 C CT 1301 PASS INDEL;BAVGPOST=0.677;BRSQ=0.241;LDAF=0.3234;AVGPOST=0.6538;RSQ=0.3064;ERATE=0.0510;THETA=0.0006;AC=447;AN=2184 GT:DS:GL:BD 0.20467032 0 1 32988783 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8888;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32988839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0881;AVGPOST=0.9939;RSQ=0.9713;ERATE=0.0004;THETA=0.0010;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 32989048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0865;AVGPOST=0.9970;RSQ=0.9849;ERATE=0.0004;THETA=0.0009;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 32989074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6981;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32989144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.925;LDAF=0.1513;AVGPOST=0.9692;RSQ=0.9164;ERATE=0.0004;THETA=0.0010;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 32989178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6354;ERATE=0.0008;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32989209 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9182;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32989279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0085;AVGPOST=0.9982;RSQ=0.9303;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 32989313 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9110;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32989411 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32989468 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0345;AVGPOST=0.9993;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 32989535 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32989595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.845;LDAF=0.0308;AVGPOST=0.9856;RSQ=0.8256;ERATE=0.0004;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 32989725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.476;LDAF=0.0099;AVGPOST=0.9876;RSQ=0.5213;ERATE=0.0029;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 32989756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0605;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 32989781 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32989955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9241;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32990034 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6423;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32990326 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.8338;AVGPOST=0.9968;RSQ=0.9910;ERATE=0.0004;THETA=0.0005;AC=1820;AN=2184 GT:DS:GL:BD 0.83333331 1 1 32990378 MERGED_DEL_2_1135 A ADELA . . SV;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5308;ERATE=0.0004;THETA=0.0004;CIEND=-17;33;CIPOS=-18;19;END=5165101;SOURCE=GenomeStrip_5163652_5165101;SVTYPE=DEL;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32990405 . C CAA 7275 PASS INDEL;BAVGPOST=0.918;BRSQ=0.779;LDAF=0.2190;AVGPOST=0.8973;RSQ=0.7697;ERATE=0.0248;THETA=0.0008;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 32990654 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.713;LDAF=0.0225;AVGPOST=0.9788;RSQ=0.6332;ERATE=0.0072;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 32990659 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0083;AVGPOST=0.9973;RSQ=0.8848;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32990688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7053;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32990689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8393;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32990824 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1702;AVGPOST=0.9966;RSQ=0.9901;ERATE=0.0004;THETA=0.0014;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 32990828 . CT C 166 PASS INDEL;BAVGPOST=0.978;BRSQ=0.465;LDAF=0.0428;AVGPOST=0.9419;RSQ=0.4282;ERATE=0.0123;THETA=0.0015;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 32990877 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32990926 . A AAAAG 70384 PASS INDEL;BAVGPOST=0.985;BRSQ=0.959;LDAF=0.8257;AVGPOST=0.9881;RSQ=0.9704;ERATE=0.0008;THETA=0.0006;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 32991032 rs34670570 A AG 17661 PASS INDEL;BAVGPOST=0.925;BRSQ=0.808;LDAF=0.7450;AVGPOST=0.8714;RSQ=0.7484;ERATE=0.0248;THETA=0.0012;AC=1691;AN=2184 GT:DS:GL:BD 0.77426738 1 1 32991035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0607;AVGPOST=0.9970;RSQ=0.9794;ERATE=0.0005;THETA=0.0007;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 32991045 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5001;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32991137 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5012;AVGPOST=0.9926;RSQ=0.9900;ERATE=0.0006;THETA=0.0014;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 32991177 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0183;AVGPOST=0.9984;RSQ=0.9665;ERATE=0.0004;THETA=0.0053;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 32991198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32991249 . TAA T 1037 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9395;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 32991288 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9479;ERATE=0.0003;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32991300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6393;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32991402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0004;THETA=0.0071;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32991454 . GTTTA G 29 PASS INDEL;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9970;RSQ=0.5423;ERATE=0.0005;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32991487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5055;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32991513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0594;AVGPOST=0.9974;RSQ=0.9820;ERATE=0.0003;THETA=0.0028;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 32991575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0101;AVGPOST=0.9975;RSQ=0.9096;ERATE=0.0003;THETA=0.0103;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 32991682 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0163;AVGPOST=0.9990;RSQ=0.9740;ERATE=0.0003;THETA=0.0060;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 32991944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.751;LDAF=0.0069;AVGPOST=0.9956;RSQ=0.7643;ERATE=0.0003;THETA=0.0133;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32992002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.901;LDAF=0.0194;AVGPOST=0.9947;RSQ=0.8875;ERATE=0.0002;THETA=0.0215;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 32992034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0072;AVGPOST=0.9957;RSQ=0.7876;ERATE=0.0003;THETA=0.0080;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 32992067 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.792;LDAF=0.0041;AVGPOST=0.9971;RSQ=0.7116;ERATE=0.0008;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32992101 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.3568;ERATE=0.0007;THETA=0.0223;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32992237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5565;ERATE=0.0004;THETA=0.0278;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32992289 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.6784;ERATE=0.0009;THETA=0.0242;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32992294 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8123;ERATE=0.0002;THETA=0.0067;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32992389 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0167;AVGPOST=0.9974;RSQ=0.9430;ERATE=0.0003;THETA=0.0016;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 32992526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7951;ERATE=0.0004;THETA=0.0095;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32992528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32992664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6693;ERATE=0.0003;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32992789 rs111245554 ACTGTTAAAT A 5868 PASS INDEL;BAVGPOST=0.995;BRSQ=0.908;LDAF=0.0243;AVGPOST=0.9918;RSQ=0.8680;ERATE=0.0016;THETA=0.0074;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 32992869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0214;AVGPOST=0.9968;RSQ=0.9532;ERATE=0.0003;THETA=0.0094;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 32992879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.743;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7694;ERATE=0.0004;THETA=0.0079;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32992982 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.773;LDAF=0.0063;AVGPOST=0.9965;RSQ=0.7914;ERATE=0.0004;THETA=0.0247;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32993064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5730;ERATE=0.0002;THETA=0.0177;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32993196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0293;AVGPOST=0.9978;RSQ=0.9697;ERATE=0.0005;THETA=0.0057;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 32993203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2119;AVGPOST=0.9915;RSQ=0.9809;ERATE=0.0004;THETA=0.0063;AC=463;AN=2184 GT:DS:GL:BD 0.21199633 0 1 32993233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5879;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32993277 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8452;AVGPOST=0.9961;RSQ=0.9882;ERATE=0.0004;THETA=0.0005;AC=1848;AN=2184 GT:DS:GL:BD 0.84615386 1 1 32993286 . TC T 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5569;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32993357 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0785;AVGPOST=0.9979;RSQ=0.9903;ERATE=0.0002;THETA=0.0010;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 32993419 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7102;ERATE=0.0004;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32993532 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0002;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32993716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0794;AVGPOST=0.9977;RSQ=0.9868;ERATE=0.0005;THETA=0.0004;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 32993744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0004;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32993777 rs35295436 ACATTAGCACTT A 83100 PASS INDEL;BAVGPOST=0.993;BRSQ=0.975;LDAF=0.8309;AVGPOST=0.9734;RSQ=0.9300;ERATE=0.0031;THETA=0.0046;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 32993903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4468;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32993934 . G GA 8 PASS INDEL;BAVGPOST=0.998;BRSQ=0.617;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4011;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32994076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4926;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32994147 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0002;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32994163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32994253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8539;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32994297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0084;AVGPOST=0.9979;RSQ=0.9080;ERATE=0.0004;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32994370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0029;AVGPOST=0.9980;RSQ=0.7066;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32994376 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0260;AVGPOST=0.9991;RSQ=0.9862;ERATE=0.0003;THETA=0.0009;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32994526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7792;ERATE=0.0004;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32994533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0266;AVGPOST=0.9980;RSQ=0.9718;ERATE=0.0003;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32994563 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0260;AVGPOST=0.9992;RSQ=0.9879;ERATE=0.0003;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 32994614 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5496;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32994642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0485;AVGPOST=0.9954;RSQ=0.9675;ERATE=0.0003;THETA=0.0033;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 32994643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0188;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0002;THETA=0.0013;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 32994654 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7754;ERATE=0.0005;THETA=0.0151;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32994879 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0034;AVGPOST=0.9990;RSQ=0.8738;ERATE=0.0007;THETA=0.0134;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32994885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9114;ERATE=0.0004;THETA=0.0050;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32994893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0005;THETA=0.0079;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32995007 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0042;AVGPOST=0.9987;RSQ=0.8713;ERATE=0.0009;THETA=0.0132;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32995066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8599;ERATE=0.0013;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32995084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0144;AVGPOST=0.9986;RSQ=0.9617;ERATE=0.0005;THETA=0.0084;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 32995117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6633;ERATE=0.0003;THETA=0.0113;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995127 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7593;ERATE=0.0004;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32995149 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9706;ERATE=0.0003;THETA=0.0148;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 32995162 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0109;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995202 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8204;ERATE=0.0004;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32995239 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.871;LDAF=0.0319;AVGPOST=0.9901;RSQ=0.8892;ERATE=0.0004;THETA=0.0088;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 32995306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.658;LDAF=0.0257;AVGPOST=0.9790;RSQ=0.6812;ERATE=0.0013;THETA=0.0136;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32995329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.885;BRSQ=0.544;LDAF=0.1509;AVGPOST=0.8584;RSQ=0.5380;ERATE=0.0084;THETA=0.0109;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 32995382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.444;LDAF=0.0427;AVGPOST=0.9476;RSQ=0.4704;ERATE=0.0040;THETA=0.0130;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 32995389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.808;BRSQ=0.250;LDAF=0.1946;AVGPOST=0.7668;RSQ=0.3574;ERATE=0.0169;THETA=0.0146;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 32995521 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.923;BRSQ=0.329;LDAF=0.0867;AVGPOST=0.8806;RSQ=0.3665;ERATE=0.0092;THETA=0.0127;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 32995528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.916;BRSQ=0.384;LDAF=0.0959;AVGPOST=0.8929;RSQ=0.5087;ERATE=0.0060;THETA=0.0258;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 32995545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.438;LDAF=0.0910;AVGPOST=0.8932;RSQ=0.4688;ERATE=0.0032;THETA=0.0066;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 32995578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.271;LDAF=0.0798;AVGPOST=0.8879;RSQ=0.3688;ERATE=0.0029;THETA=0.0073;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 32995612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7242;ERATE=0.0006;THETA=0.0215;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32995797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.937;LDAF=0.0329;AVGPOST=0.9947;RSQ=0.9402;ERATE=0.0005;THETA=0.0075;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 32995857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8025;ERATE=0.0004;THETA=0.0063;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32995862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7390;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32995866 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0004;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32995889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0258;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995896 . TCA T 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0004;THETA=0.0170;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995897 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7565;ERATE=0.0007;THETA=0.0151;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32995975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0073;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32995983 . CA C 574 PASS INDEL;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0073;AVGPOST=0.9953;RSQ=0.7063;ERATE=0.0009;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32996169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.772;LDAF=0.7600;AVGPOST=0.8953;RSQ=0.8023;ERATE=0.0150;THETA=0.0009;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 32996170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5439;ERATE=0.0004;THETA=0.0135;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32996189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.731;LDAF=0.0149;AVGPOST=0.9915;RSQ=0.7742;ERATE=0.0015;THETA=0.0225;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32996227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.908;BRSQ=0.755;LDAF=0.1885;AVGPOST=0.9187;RSQ=0.7867;ERATE=0.0207;THETA=0.0120;AC=350;AN=2184 GT:DS:GL:BD 0.16025642 0 1 32996242 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.657;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5959;ERATE=0.0004;THETA=0.0171;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32996266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8890;ERATE=0.0003;THETA=0.0145;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32996329 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.7826;ERATE=0.0016;THETA=0.0052;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32996363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.682;LDAF=0.0202;AVGPOST=0.9816;RSQ=0.6018;ERATE=0.0051;THETA=0.0216;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32996460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.874;LDAF=0.0857;AVGPOST=0.9663;RSQ=0.8331;ERATE=0.0061;THETA=0.0310;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 32996473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.578;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4358;ERATE=0.0007;THETA=0.0134;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32996693 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6303;ERATE=0.0004;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32996828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7338;ERATE=0.0004;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32996829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4095;ERATE=0.0004;THETA=0.0202;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32996919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0126;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32996920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0131;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32996964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0060;AVGPOST=0.9980;RSQ=0.8750;ERATE=0.0004;THETA=0.0234;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32997000 . CT C 116 PASS INDEL;BAVGPOST=0.980;BRSQ=0.470;LDAF=0.0248;AVGPOST=0.9702;RSQ=0.5234;ERATE=0.0057;THETA=0.0265;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 32997033 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.4460;AVGPOST=0.9825;RSQ=0.9782;ERATE=0.0021;THETA=0.0015;AC=974;AN=2184 GT:DS:GL:BD 0.44597068 0 1 32997034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.944;LDAF=0.0248;AVGPOST=0.9958;RSQ=0.9401;ERATE=0.0004;THETA=0.0032;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 32997035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8342;ERATE=0.0007;THETA=0.0030;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32997067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.989;LDAF=0.4483;AVGPOST=0.9906;RSQ=0.9887;ERATE=0.0004;THETA=0.0020;AC=978;AN=2184 GT:DS:GL:BD 0.44780219 0 1 32997183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0082;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32997207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.4414;AVGPOST=0.9871;RSQ=0.9843;ERATE=0.0012;THETA=0.0011;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 32997283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0006;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32997307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.4991;ERATE=0.0006;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32997376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32997378 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0026;AVGPOST=0.9980;RSQ=0.6909;ERATE=0.0007;THETA=0.0038;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32997392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0055;AVGPOST=0.9978;RSQ=0.8278;ERATE=0.0005;THETA=0.0062;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32997404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.829;LDAF=0.0084;AVGPOST=0.9964;RSQ=0.8427;ERATE=0.0004;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 32997455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.509;LDAF=0.0040;AVGPOST=0.9955;RSQ=0.4815;ERATE=0.0014;THETA=0.0025;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 32997568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.950;LDAF=0.0646;AVGPOST=0.9872;RSQ=0.9187;ERATE=0.0009;THETA=0.0020;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 32997569 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6533;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32997626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.956;LDAF=0.6912;AVGPOST=0.9842;RSQ=0.9734;ERATE=0.0017;THETA=0.0015;AC=1512;AN=2184 GT:DS:GL:BD 0.69230771 1 1 32997709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5817;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32997710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0050;AVGPOST=0.9983;RSQ=0.8489;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32997827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6458;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32997881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0015;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 32998006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6919;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32998086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.428;LDAF=0.0033;AVGPOST=0.9975;RSQ=0.6917;ERATE=0.0006;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 32998090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.959;LDAF=0.2426;AVGPOST=0.9836;RSQ=0.9686;ERATE=0.0007;THETA=0.0050;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 32998091 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8964;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 32998278 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0099;AVGPOST=0.9983;RSQ=0.9301;ERATE=0.0004;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 32998359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8591;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 32998386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7361;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32998396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0208;AVGPOST=0.9968;RSQ=0.9439;ERATE=0.0003;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 32998407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32998511 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7426;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 32998516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9443;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 32998529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0125;AVGPOST=0.9988;RSQ=0.9611;ERATE=0.0004;THETA=0.0014;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 32998815 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32998865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9600;ERATE=0.0004;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 32999075 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8945;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 32999106 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0118;AVGPOST=0.9976;RSQ=0.9202;ERATE=0.0016;THETA=0.0027;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32999140 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4379;AVGPOST=0.9935;RSQ=0.9912;ERATE=0.0009;THETA=0.0009;AC=956;AN=2184 GT:DS:GL:BD 0.43772894 0 1 32999339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=0.9990;RSQ=0.9694;ERATE=0.0004;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 32999461 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.869;LDAF=0.0083;AVGPOST=0.9969;RSQ=0.8542;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 32999466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0336;AVGPOST=0.9977;RSQ=0.9727;ERATE=0.0004;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 32999516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5224;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999635 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5552;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9046;ERATE=0.0006;THETA=0.0020;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 32999796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4125;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 32999832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6111;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 32999959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9459;ERATE=0.0005;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33000083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0602;AVGPOST=0.9988;RSQ=0.9930;ERATE=0.0003;THETA=0.0006;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 33000117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.9201;ERATE=0.0003;THETA=0.0026;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33000346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.605;LDAF=0.0057;AVGPOST=0.9973;RSQ=0.8045;ERATE=0.0009;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33000357 rs35810282 T TA 450 PASS INDEL;BAVGPOST=0.711;BRSQ=0.338;LDAF=0.2982;AVGPOST=0.7409;RSQ=0.4874;ERATE=0.0137;THETA=0.0010;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 33000389 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9187;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33000432 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6636;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33000667 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8316;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33000677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0259;AVGPOST=0.9992;RSQ=0.9866;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 33000795 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.7025;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33000871 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0104;AVGPOST=0.9988;RSQ=0.9451;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33000924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.857;LDAF=0.0076;AVGPOST=0.9973;RSQ=0.8571;ERATE=0.0004;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33000927 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0434;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 33000977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33000990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1697;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0008;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 33001147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7825;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33001152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9364;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33001157 . GC G 209 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.5056;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33001190 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5303;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33001692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9147;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33001771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.848;LDAF=0.0173;AVGPOST=0.9908;RSQ=0.7999;ERATE=0.0007;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 33001936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0533;AVGPOST=0.9975;RSQ=0.9857;ERATE=0.0005;THETA=0.0005;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 33001947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6253;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33001976 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33002208 . CTT C 328 PASS INDEL;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0075;AVGPOST=0.9944;RSQ=0.6976;ERATE=0.0008;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33002234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33002255 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0662;AVGPOST=0.9955;RSQ=0.9777;ERATE=0.0021;THETA=0.0004;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 33002279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.811;LDAF=0.9892;AVGPOST=0.9912;RSQ=0.6878;ERATE=0.0011;THETA=0.0007;AC=2163;AN=2184 GT:DS:GL:BD 0.99038464 1 1 33002308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33002435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9676;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33002442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33002454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6976;ERATE=0.0004;THETA=0.0044;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33002455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6550;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33002495 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33002620 . AG A 51 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5247;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33002661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7393;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33002706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0468;AVGPOST=0.9976;RSQ=0.9800;ERATE=0.0005;THETA=0.0006;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 33002721 . C CAT 230 PASS INDEL;BAVGPOST=0.957;BRSQ=0.665;LDAF=0.0720;AVGPOST=0.9477;RSQ=0.7043;ERATE=0.0059;THETA=0.0005;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 33002751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.913;BRSQ=0.755;LDAF=0.2516;AVGPOST=0.8862;RSQ=0.7395;ERATE=0.0898;THETA=0.0031;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 33002775 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0523;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 33002949 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8889;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33002971 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0904;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=198;AN=2184 GT:DS:GL:BD 0.09065934 0 1 33003066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0044;AVGPOST=0.9954;RSQ=0.6448;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33003114 . C CG 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4266;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003132 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33003155 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7876;ERATE=0.0011;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33003386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003496 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003523 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5328;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0044;AVGPOST=0.9988;RSQ=0.8857;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33003571 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8584;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33003574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33003580 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.918;LDAF=0.9249;AVGPOST=0.9895;RSQ=0.9391;ERATE=0.0005;THETA=0.0006;AC=2023;AN=2184 GT:DS:GL:BD 0.92628205 1 1 33003621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5312;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6097;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4374;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33003783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.883;LDAF=0.0150;AVGPOST=0.9956;RSQ=0.8989;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33003898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0090;AVGPOST=0.9976;RSQ=0.8900;ERATE=0.0003;THETA=0.0016;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33003899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.358;LDAF=0.0163;AVGPOST=0.9738;RSQ=0.3767;ERATE=0.0017;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33004013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.4580;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33004066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0439;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 33004205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0159;AVGPOST=0.9991;RSQ=0.9781;ERATE=0.0003;THETA=0.0011;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33004275 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0913;AVGPOST=0.9989;RSQ=0.9956;ERATE=0.0003;THETA=0.0007;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 33004323 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8943;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33004457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33004551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0909;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 33004553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0096;AVGPOST=0.9986;RSQ=0.9391;ERATE=0.0006;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33004573 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7012;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33004681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0910;AVGPOST=0.9994;RSQ=0.9971;ERATE=0.0004;THETA=0.0008;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 33004696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33004698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33004880 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0196;AVGPOST=0.9981;RSQ=0.9649;ERATE=0.0004;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33004968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8562;AVGPOST=0.9976;RSQ=0.9930;ERATE=0.0004;THETA=0.0005;AC=1871;AN=2184 GT:DS:GL:BD 0.85668498 1 1 33005009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6348;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33005051 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.600;LDAF=0.0047;AVGPOST=0.9959;RSQ=0.6212;ERATE=0.0009;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33005123 . CA C 2594 PASS INDEL;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0160;AVGPOST=0.9959;RSQ=0.9006;ERATE=0.0003;THETA=0.0017;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33005153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6083;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33005207 . GC G 714 PASS INDEL;BAVGPOST=0.996;BRSQ=0.787;LDAF=0.0075;AVGPOST=0.9969;RSQ=0.8305;ERATE=0.0003;THETA=0.0046;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33005256 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9291;AVGPOST=0.9970;RSQ=0.9836;ERATE=0.0005;THETA=0.0006;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 33005291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4842;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005384 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.801;LDAF=0.8768;AVGPOST=0.9553;RSQ=0.8504;ERATE=0.0043;THETA=0.0010;AC=1945;AN=2184 GT:DS:GL:BD 0.89056778 1 1 33005391 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.928;LDAF=0.9232;AVGPOST=0.9887;RSQ=0.9402;ERATE=0.0014;THETA=0.0007;AC=2024;AN=2184 GT:DS:GL:BD 0.92673993 1 1 33005407 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.872;LDAF=0.0543;AVGPOST=0.9890;RSQ=0.9161;ERATE=0.0007;THETA=0.0015;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 33005426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.942;LDAF=0.8499;AVGPOST=0.9944;RSQ=0.9848;ERATE=0.0005;THETA=0.0009;AC=1860;AN=2184 GT:DS:GL:BD 0.85164833 1 1 33005457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0047;AVGPOST=0.9942;RSQ=0.5066;ERATE=0.0006;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33005541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33005594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7284;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005652 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33005659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6025;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.644;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3173;ERATE=0.0008;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33005903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8412;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33005948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.7845;ERATE=0.0007;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33005956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.709;LDAF=0.0522;AVGPOST=0.9717;RSQ=0.8041;ERATE=0.0006;THETA=0.0008;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 33005973 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.851;LDAF=0.8629;AVGPOST=0.9324;RSQ=0.7959;ERATE=0.0056;THETA=0.0007;AC=1919;AN=2184 GT:DS:GL:BD 0.87866300 1 1 33005984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.557;LDAF=0.0353;AVGPOST=0.9748;RSQ=0.7260;ERATE=0.0007;THETA=0.0011;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 33006018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0031;AVGPOST=0.9986;RSQ=0.7918;ERATE=0.0006;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33006022 rs35441979 C CT 43774 PASS INDEL;BAVGPOST=0.932;BRSQ=0.765;LDAF=0.8464;AVGPOST=0.9113;RSQ=0.7405;ERATE=0.0126;THETA=0.0008;AC=1889;AN=2184 GT:DS:GL:BD 0.86492676 1 1 33006116 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0125;AVGPOST=0.9984;RSQ=0.9549;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33006141 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0198;AVGPOST=0.9969;RSQ=0.9517;ERATE=0.0004;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33006154 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.903;LDAF=0.9210;AVGPOST=0.9862;RSQ=0.9275;ERATE=0.0011;THETA=0.0005;AC=2022;AN=2184 GT:DS:GL:BD 0.92582417 1 1 33006164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8831;ERATE=0.0004;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33006212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0195;AVGPOST=0.9957;RSQ=0.9343;ERATE=0.0004;THETA=0.0028;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33006243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0072;AVGPOST=0.9983;RSQ=0.8961;ERATE=0.0004;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33006335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0044;AVGPOST=0.9949;RSQ=0.4911;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33006400 . A AT 145 PASS INDEL;BAVGPOST=0.993;BRSQ=0.548;LDAF=0.0133;AVGPOST=0.9851;RSQ=0.5186;ERATE=0.0041;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33006517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8544;AVGPOST=0.9970;RSQ=0.9908;ERATE=0.0007;THETA=0.0010;AC=1866;AN=2184 GT:DS:GL:BD 0.85439563 1 1 33006607 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.9284;AVGPOST=0.9944;RSQ=0.9658;ERATE=0.0007;THETA=0.0018;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 33006632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.892;LDAF=0.8443;AVGPOST=0.9826;RSQ=0.9548;ERATE=0.0007;THETA=0.0008;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 33006675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.850;LDAF=0.8910;AVGPOST=0.9759;RSQ=0.9067;ERATE=0.0016;THETA=0.0024;AC=1966;AN=2184 GT:DS:GL:BD 0.90018314 1 1 33006735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0043;AVGPOST=0.9967;RSQ=0.6966;ERATE=0.0005;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33006748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0196;AVGPOST=0.9983;RSQ=0.9632;ERATE=0.0004;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33006779 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.641;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7823;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33006809 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8435;ERATE=0.0006;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33006812 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.9292;AVGPOST=0.9963;RSQ=0.9787;ERATE=0.0005;THETA=0.0055;AC=2032;AN=2184 GT:DS:GL:BD 0.93040293 1 1 33006842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0052;AVGPOST=0.9980;RSQ=0.8511;ERATE=0.0003;THETA=0.0048;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33006927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9303;AVGPOST=0.9977;RSQ=0.9853;ERATE=0.0005;THETA=0.0008;AC=2034;AN=2184 GT:DS:GL:BD 0.93131870 1 1 33006983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8385;ERATE=0.0004;THETA=0.0024;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33007119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9540;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33007133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.632;LDAF=0.0074;AVGPOST=0.9926;RSQ=0.6189;ERATE=0.0007;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33007202 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5643;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33007240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33007388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6371;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33007409 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.952;LDAF=0.8476;AVGPOST=0.9880;RSQ=0.9722;ERATE=0.0005;THETA=0.0006;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 33007474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9679;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33007511 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.953;LDAF=0.0229;AVGPOST=0.9959;RSQ=0.9338;ERATE=0.0004;THETA=0.0022;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 33007648 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.900;LDAF=0.2774;AVGPOST=0.9519;RSQ=0.9265;ERATE=0.0008;THETA=0.0011;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 33007671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8545;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33007724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9312;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0003;THETA=0.0009;AC=2034;AN=2184 GT:DS:GL:BD 0.93131870 1 1 33007805 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33007811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.945;LDAF=0.0245;AVGPOST=0.9979;RSQ=0.9650;ERATE=0.0003;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 33007819 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9292;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33007846 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6942;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33007920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0132;AVGPOST=0.9964;RSQ=0.8910;ERATE=0.0004;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 33007987 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33007990 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33008009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33008082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8054;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33008181 . T TG 199 PASS INDEL;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.6586;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33008195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.0904;AVGPOST=0.9909;RSQ=0.9604;ERATE=0.0003;THETA=0.0012;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 33008262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0314;AVGPOST=0.9979;RSQ=0.9770;ERATE=0.0003;THETA=0.0012;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 33008340 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33008371 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6841;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33008479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33008543 . GGTGGGGCT G 177 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7013;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33008666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33008699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33008728 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6267;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33008925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9415;AVGPOST=0.9982;RSQ=0.9849;ERATE=0.0005;THETA=0.0008;AC=2058;AN=2184 GT:DS:GL:BD 0.94230771 1 1 33008947 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7543;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33009098 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7844;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33009193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8773;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33009200 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9423;AVGPOST=0.9993;RSQ=0.9947;ERATE=0.0003;THETA=0.0029;AC=2058;AN=2184 GT:DS:GL:BD 0.94230771 1 1 33009225 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6927;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33009274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0315;AVGPOST=0.9994;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 33009310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33009314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0270;AVGPOST=0.9996;RSQ=0.9944;ERATE=0.0003;THETA=0.0024;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 33009340 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9310;AVGPOST=0.9988;RSQ=0.9936;ERATE=0.0003;THETA=0.0008;AC=2034;AN=2184 GT:DS:GL:BD 0.93131870 1 1 33009366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6186;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33009372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9179;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33009590 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0268;AVGPOST=0.9990;RSQ=0.9855;ERATE=0.0003;THETA=0.0010;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33009631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33009703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33009718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33009754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0266;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33009825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0473;AVGPOST=0.9986;RSQ=0.9881;ERATE=0.0005;THETA=0.0018;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 33009935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.533;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6898;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33010081 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8838;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33010086 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6280;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33010130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4099;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0005;THETA=0.0027;AC=894;AN=2184 GT:DS:GL:BD 0.40934065 0 1 33010152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33010421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4364;AVGPOST=0.9952;RSQ=0.9921;ERATE=0.0010;THETA=0.0028;AC=953;AN=2184 GT:DS:GL:BD 0.43635532 0 1 33010446 . CCT C 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6164;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33010502 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0034;AVGPOST=0.9979;RSQ=0.7744;ERATE=0.0003;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33010540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5616;ERATE=0.0007;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33010589 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0040;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33010759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.940;LDAF=0.3732;AVGPOST=0.9731;RSQ=0.9566;ERATE=0.0026;THETA=0.0009;AC=815;AN=2184 GT:DS:GL:BD 0.37316850 0 1 33010760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.954;LDAF=0.3225;AVGPOST=0.9678;RSQ=0.9533;ERATE=0.0024;THETA=0.0043;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 33010770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.936;LDAF=0.0548;AVGPOST=0.9907;RSQ=0.9317;ERATE=0.0005;THETA=0.0069;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 33010826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.836;LDAF=0.0083;AVGPOST=0.9947;RSQ=0.7693;ERATE=0.0005;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33010842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.870;LDAF=0.0307;AVGPOST=0.9899;RSQ=0.8636;ERATE=0.0004;THETA=0.0104;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 33010872 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4529;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33010901 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0178;AVGPOST=0.9978;RSQ=0.9553;ERATE=0.0004;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33011082 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.955;LDAF=0.4052;AVGPOST=0.9674;RSQ=0.9478;ERATE=0.0095;THETA=0.0012;AC=884;AN=2184 GT:DS:GL:BD 0.40476191 0 1 33011095 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0401;AVGPOST=0.9983;RSQ=0.9844;ERATE=0.0004;THETA=0.0021;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 33011255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33011324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8096;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33011342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0264;AVGPOST=0.9990;RSQ=0.9838;ERATE=0.0004;THETA=0.0018;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33011416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0054;AVGPOST=0.9966;RSQ=0.7408;ERATE=0.0011;THETA=0.0061;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33011417 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7602;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33011585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0035;AVGPOST=0.9976;RSQ=0.7218;ERATE=0.0005;THETA=0.0077;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33011610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5320;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33011743 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0285;AVGPOST=0.9963;RSQ=0.9439;ERATE=0.0004;THETA=0.0013;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33011754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0344;AVGPOST=0.9971;RSQ=0.9637;ERATE=0.0006;THETA=0.0021;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 33011799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0134;AVGPOST=0.9989;RSQ=0.9710;ERATE=0.0005;THETA=0.0112;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33011809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.2272;AVGPOST=0.9927;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 33011827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.982;LDAF=0.2067;AVGPOST=0.9929;RSQ=0.9864;ERATE=0.0003;THETA=0.0008;AC=450;AN=2184 GT:DS:GL:BD 0.20604396 0 1 33011836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33011838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8171;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33011929 . A AG 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0062;AVGPOST=0.9973;RSQ=0.8354;ERATE=0.0004;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33012000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.7856;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33012014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0058;AVGPOST=0.9985;RSQ=0.9057;ERATE=0.0003;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33012060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33012092 . A AG 1896 PASS INDEL;BAVGPOST=0.993;BRSQ=0.943;LDAF=0.0455;AVGPOST=0.9899;RSQ=0.9061;ERATE=0.0015;THETA=0.0017;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 33012130 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.949;LDAF=0.0261;AVGPOST=0.9972;RSQ=0.9573;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 33012205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5198;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33012220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.2248;AVGPOST=0.9923;RSQ=0.9838;ERATE=0.0008;THETA=0.0003;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 33012249 . TC T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.4942;ERATE=0.0007;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33012256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.922;LDAF=0.0383;AVGPOST=0.9893;RSQ=0.8921;ERATE=0.0005;THETA=0.0008;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 33012348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.926;LDAF=0.4617;AVGPOST=0.9618;RSQ=0.9444;ERATE=0.0012;THETA=0.0006;AC=1011;AN=2184 GT:DS:GL:BD 0.46291208 0 1 33012412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0080;AVGPOST=0.9958;RSQ=0.7994;ERATE=0.0004;THETA=0.0031;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33012524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0031;AVGPOST=0.9983;RSQ=0.7581;ERATE=0.0003;THETA=0.0018;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33012646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.900;LDAF=0.0176;AVGPOST=0.9945;RSQ=0.8734;ERATE=0.0009;THETA=0.0060;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33012662 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.971;LDAF=0.2818;AVGPOST=0.9687;RSQ=0.9459;ERATE=0.0043;THETA=0.0016;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 33012678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33012679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33012689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.553;LDAF=0.0079;AVGPOST=0.9911;RSQ=0.5664;ERATE=0.0026;THETA=0.0043;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33012727 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.5998;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33012752 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33012812 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9058;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33012868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.865;LDAF=0.0090;AVGPOST=0.9973;RSQ=0.8925;ERATE=0.0004;THETA=0.0027;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33012882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4579;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33013013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9989;RSQ=0.9625;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33013053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.954;LDAF=0.3734;AVGPOST=0.9814;RSQ=0.9708;ERATE=0.0010;THETA=0.0074;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 33013117 . G GC 6789 PASS INDEL;BAVGPOST=0.957;BRSQ=0.919;LDAF=0.3569;AVGPOST=0.9639;RSQ=0.9395;ERATE=0.0021;THETA=0.0002;AC=776;AN=2184 GT:DS:GL:BD 0.35531136 0 1 33013274 rs78112404 C CT 31378 PASS INDEL;BAVGPOST=0.959;BRSQ=0.923;LDAF=0.3601;AVGPOST=0.9670;RSQ=0.9447;ERATE=0.0016;THETA=0.0075;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 33013277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.949;LDAF=0.7629;AVGPOST=0.9774;RSQ=0.9589;ERATE=0.0013;THETA=0.0034;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 33013369 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.952;LDAF=0.3971;AVGPOST=0.9772;RSQ=0.9642;ERATE=0.0007;THETA=0.0039;AC=864;AN=2184 GT:DS:GL:BD 0.39560440 0 1 33013372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.878;LDAF=0.0227;AVGPOST=0.9942;RSQ=0.9004;ERATE=0.0011;THETA=0.0035;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 33013405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.4975;ERATE=0.0005;THETA=0.0083;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33013464 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0035;AVGPOST=0.9962;RSQ=0.5541;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33013477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6024;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33013487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7478;ERATE=0.0003;THETA=0.0022;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33013512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0119;AVGPOST=0.9979;RSQ=0.9328;ERATE=0.0004;THETA=0.0018;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33013561 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9283;ERATE=0.0005;THETA=0.0037;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33013578 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6153;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33013589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.6939;ERATE=0.0004;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33013605 . T TCAAGG 4964 PASS INDEL;BAVGPOST=0.986;BRSQ=0.889;LDAF=0.0464;AVGPOST=0.9893;RSQ=0.9137;ERATE=0.0010;THETA=0.0019;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 33013687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9867;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33014085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9453;ERATE=0.0003;THETA=0.0084;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33014142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.947;LDAF=0.0132;AVGPOST=0.9977;RSQ=0.9355;ERATE=0.0004;THETA=0.0079;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33014202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7745;AVGPOST=0.9957;RSQ=0.9911;ERATE=0.0003;THETA=0.0010;AC=1692;AN=2184 GT:DS:GL:BD 0.77472526 1 1 33014499 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0772;AVGPOST=0.9987;RSQ=0.9946;ERATE=0.0004;THETA=0.0009;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 33014511 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0773;AVGPOST=0.9989;RSQ=0.9955;ERATE=0.0003;THETA=0.0015;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 33014578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.6159;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33014598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5610;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33014681 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9720;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33014686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0093;AVGPOST=0.9982;RSQ=0.9183;ERATE=0.0008;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33014774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5532;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33015001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.585;LDAF=0.0237;AVGPOST=0.9825;RSQ=0.6985;ERATE=0.0010;THETA=0.0009;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 33015299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0025;AVGPOST=0.9981;RSQ=0.6647;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33015376 . AT A 819 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0112;AVGPOST=0.9993;RSQ=0.9711;ERATE=0.0004;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33015457 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9709;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33015734 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8773;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33015842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.8021;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33015894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8372;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33016013 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0066;AVGPOST=0.9985;RSQ=0.9165;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33016071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33016129 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0328;AVGPOST=0.9987;RSQ=0.9862;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 33016401 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0072;AVGPOST=0.9999;RSQ=0.9912;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33016446 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0326;AVGPOST=0.9989;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 33016479 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3606;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0005;THETA=0.0004;AC=787;AN=2184 GT:DS:GL:BD 0.36034799 0 1 33016490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33016525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.5034;ERATE=0.0006;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33016623 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5013;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33016821 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.664;LDAF=0.0098;AVGPOST=0.9920;RSQ=0.6819;ERATE=0.0008;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33016977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.0066;AVGPOST=0.9974;RSQ=0.8383;ERATE=0.0005;THETA=0.0012;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33017118 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5910;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33017179 . C CA 219 PASS INDEL;BAVGPOST=0.992;BRSQ=0.575;LDAF=0.0145;AVGPOST=0.9826;RSQ=0.5072;ERATE=0.0050;THETA=0.0046;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33017225 . TAAG T 182 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0031;AVGPOST=0.9982;RSQ=0.7403;ERATE=0.0007;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33017301 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2862;AVGPOST=0.9961;RSQ=0.9925;ERATE=0.0008;THETA=0.0007;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 33017328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0397;AVGPOST=0.9991;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 33017383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1119;AVGPOST=0.9977;RSQ=0.9904;ERATE=0.0005;THETA=0.0007;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 33017389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5247;AVGPOST=0.9970;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=1148;AN=2184 GT:DS:GL:BD 0.52564102 1 1 33017430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.6162;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33017433 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0054;AVGPOST=0.9989;RSQ=0.9202;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33017501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.689;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5425;ERATE=0.0007;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33017504 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0350;AVGPOST=0.9990;RSQ=0.9904;ERATE=0.0004;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 33017544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9989;RSQ=0.9621;ERATE=0.0004;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33017554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0279;AVGPOST=0.9979;RSQ=0.9751;ERATE=0.0004;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33017654 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.826;LDAF=0.0111;AVGPOST=0.9949;RSQ=0.8096;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33017716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.435;LDAF=0.0029;AVGPOST=0.9963;RSQ=0.4939;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33017735 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9987;RSQ=0.9526;ERATE=0.0005;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33017912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9411;ERATE=0.0004;THETA=0.0010;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33018086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9358;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33018182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.872;LDAF=0.0082;AVGPOST=0.9978;RSQ=0.8848;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33018221 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0342;AVGPOST=0.9974;RSQ=0.9710;ERATE=0.0005;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 33018249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.628;LDAF=0.0068;AVGPOST=0.9952;RSQ=0.6925;ERATE=0.0007;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33018321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.857;LDAF=0.0540;AVGPOST=0.9850;RSQ=0.8850;ERATE=0.0009;THETA=0.0004;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 33018423 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33018606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33018624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33018645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33018663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3574;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0004;AC=782;AN=2184 GT:DS:GL:BD 0.35805860 0 1 33018729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33018747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33018761 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33018811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33018816 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0021;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33018889 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0105;AVGPOST=0.9997;RSQ=0.9896;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33018908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0199;AVGPOST=0.9992;RSQ=0.9884;ERATE=0.0004;THETA=0.0046;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 33018990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5956;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33019008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33019035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33019165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33019180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2636;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0002;AC=577;AN=2184 GT:DS:GL:BD 0.26419413 0 1 33019435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33019449 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33019517 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33019540 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6309;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33019752 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0004;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33019790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33019811 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0269;AVGPOST=0.9991;RSQ=0.9891;ERATE=0.0003;THETA=0.0010;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 33019818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5042;ERATE=0.0007;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33020010 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.3571;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0006;THETA=0.0004;AC=782;AN=2184 GT:DS:GL:BD 0.35805860 0 1 33020057 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0244;AVGPOST=0.9980;RSQ=0.9676;ERATE=0.0004;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 33020081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.991;LDAF=0.5195;AVGPOST=0.9936;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=1138;AN=2184 GT:DS:GL:BD 0.52106225 1 1 33020127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33020185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33020281 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33020299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5633;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33020330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33020346 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33020364 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9988;RSQ=0.9579;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020380 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1015;AVGPOST=0.9989;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=222;AN=2184 GT:DS:GL:BD 0.10164835 0 1 33020389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7166;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33020439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5993;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33020452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2797;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0005;THETA=0.0004;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 33020488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9994;RSQ=0.9784;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020559 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6839;AVGPOST=0.9934;RSQ=0.9909;ERATE=0.0005;THETA=0.0005;AC=1493;AN=2184 GT:DS:GL:BD 0.68360806 1 1 33020613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.595;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33020646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0872;AVGPOST=0.9966;RSQ=0.9857;ERATE=0.0008;THETA=0.0002;AC=189;AN=2184 GT:DS:GL:BD 0.08653846 0 1 33020662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9988;RSQ=0.9591;ERATE=0.0004;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020690 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0123;AVGPOST=0.9988;RSQ=0.9603;ERATE=0.0003;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9558;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33020785 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0142;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33020790 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4583;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33020838 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.540;LDAF=0.0189;AVGPOST=0.9770;RSQ=0.5226;ERATE=0.0045;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9933;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33020948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0077;AVGPOST=0.9989;RSQ=0.9413;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33020967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.834;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8746;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33021049 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9804;ERATE=0.0003;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33021127 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9998;RSQ=0.9918;ERATE=0.0003;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33021131 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.788;LDAF=0.0042;AVGPOST=0.9992;RSQ=0.9107;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33021222 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9997;RSQ=0.9902;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33021245 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9694;AVGPOST=0.9992;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=2117;AN=2184 GT:DS:GL:BD 0.96932232 1 1 33021297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0136;AVGPOST=0.9979;RSQ=0.9523;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33021332 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5655;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021359 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.899;LDAF=0.0093;AVGPOST=0.9976;RSQ=0.9076;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33021466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9086;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33021499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0095;AVGPOST=0.9995;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33021520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33021531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4079;AVGPOST=0.9981;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=891;AN=2184 GT:DS:GL:BD 0.40796703 0 1 33021574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021586 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0084;AVGPOST=0.9986;RSQ=0.9371;ERATE=0.0004;THETA=0.0023;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33021677 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0088;AVGPOST=0.9980;RSQ=0.9143;ERATE=0.0004;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33021833 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6160;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33021976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0489;AVGPOST=0.9992;RSQ=0.9930;ERATE=0.0003;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 33021988 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0486;AVGPOST=0.9994;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=106;AN=2184 GT:DS:GL:BD 0.04853480 0 1 33022188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8861;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33022406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.0282;AVGPOST=0.9985;RSQ=0.9809;ERATE=0.0003;THETA=0.0002;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33022445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7906;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33022468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4153;AVGPOST=0.9970;RSQ=0.9960;ERATE=0.0005;THETA=0.0002;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 33022483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7255;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33022600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9413;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33022660 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.9575;AVGPOST=0.9972;RSQ=0.9740;ERATE=0.0005;THETA=0.0006;AC=2094;AN=2184 GT:DS:GL:BD 0.95879120 1 1 33022755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1100;AVGPOST=0.9952;RSQ=0.9851;ERATE=0.0010;THETA=0.0003;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 33022756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33022774 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6703;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33022821 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0059;AVGPOST=0.9992;RSQ=0.9416;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33022838 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33022910 . CAG C 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7621;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33022931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33022994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.489;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6309;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3909;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4296;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2760;AVGPOST=0.9983;RSQ=0.9966;ERATE=0.0005;THETA=0.0003;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 33023250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4079;AVGPOST=0.9941;RSQ=0.9921;ERATE=0.0007;THETA=0.0002;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 33023364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5651;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33023441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4084;AVGPOST=0.9994;RSQ=0.9991;ERATE=0.0003;THETA=0.0004;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 33023450 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9821;AVGPOST=0.9997;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=2145;AN=2184 GT:DS:GL:BD 0.98214287 1 1 33023463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4943;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 33023485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6166;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33023514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4086;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0006;THETA=0.0003;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 33023551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2772;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 33023720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5883;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0053;AVGPOST=0.9980;RSQ=0.8641;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33023751 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4153;AVGPOST=0.9978;RSQ=0.9970;ERATE=0.0003;THETA=0.0003;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 33023778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.5118;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33023783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9940;RSQ=0.7936;ERATE=0.0007;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33024008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8532;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33024118 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9710;ERATE=0.0004;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33024148 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0522;AVGPOST=0.9938;RSQ=0.9594;ERATE=0.0006;THETA=0.0002;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 33024206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0086;AVGPOST=0.9946;RSQ=0.7592;ERATE=0.0006;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33024267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.8608;AVGPOST=0.9959;RSQ=0.9911;ERATE=0.0005;THETA=0.0005;AC=1880;AN=2184 GT:DS:GL:BD 0.86080587 1 1 33024269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0393;AVGPOST=0.9928;RSQ=0.9351;ERATE=0.0008;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 33024270 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4568;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33024278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.882;LDAF=0.0113;AVGPOST=0.9951;RSQ=0.8431;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33024292 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1025;AVGPOST=0.9962;RSQ=0.9865;ERATE=0.0007;THETA=0.0005;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 33024326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.435;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5029;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33024339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9990;RSQ=0.9598;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33024385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8313;ERATE=0.0004;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33024408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2767;AVGPOST=0.9949;RSQ=0.9902;ERATE=0.0009;THETA=0.0004;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 33024443 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0493;AVGPOST=0.9984;RSQ=0.9889;ERATE=0.0004;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 33024510 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3952;AVGPOST=0.9973;RSQ=0.9957;ERATE=0.0007;THETA=0.0005;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 33024536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33024628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7076;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33024671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33024813 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8655;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0004;THETA=0.0002;AC=1890;AN=2184 GT:DS:GL:BD 0.86538464 1 1 33024833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2760;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0006;THETA=0.0004;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 33024840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33024874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33025040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4090;AVGPOST=0.9985;RSQ=0.9978;ERATE=0.0004;THETA=0.0022;AC=892;AN=2184 GT:DS:GL:BD 0.40842491 0 1 33025169 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0063;AVGPOST=0.9992;RSQ=0.9453;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33025183 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4833;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33025190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8624;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33025211 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5296;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33025242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0046;AVGPOST=0.9973;RSQ=0.7654;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33025253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2763;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0008;AC=602;AN=2184 GT:DS:GL:BD 0.27564102 0 1 33025254 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8147;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33025255 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2468;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0005;THETA=0.0006;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 33025262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.8077;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33025393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0526;AVGPOST=0.9978;RSQ=0.9810;ERATE=0.0005;THETA=0.0011;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 33025650 . C CA 66 PASS INDEL;BAVGPOST=0.996;BRSQ=0.638;LDAF=0.0051;AVGPOST=0.9936;RSQ=0.4712;ERATE=0.0022;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33025681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.8491;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33025749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8282;ERATE=0.0008;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33025809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7882;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33025824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7602;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33025827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33025866 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6692;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33026016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33026018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0472;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 33026059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0196;AVGPOST=0.9989;RSQ=0.9811;ERATE=0.0003;THETA=0.0015;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 33026182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0189;AVGPOST=0.9996;RSQ=0.9922;ERATE=0.0003;THETA=0.0032;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33026270 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33026276 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.1782;AVGPOST=0.9971;RSQ=0.9922;ERATE=0.0005;THETA=0.0005;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 33026364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7941;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33026403 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5421;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33026556 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6908;ERATE=0.0009;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33026559 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0649;AVGPOST=0.9979;RSQ=0.9863;ERATE=0.0004;THETA=0.0002;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 33026718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0123;AVGPOST=0.9957;RSQ=0.8600;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33026720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.4536;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33026773 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5980;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33026785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6665;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33027032 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4419;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33027081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.709;LDAF=0.0064;AVGPOST=0.9957;RSQ=0.7105;ERATE=0.0006;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33027124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.868;LDAF=0.0070;AVGPOST=0.9973;RSQ=0.8346;ERATE=0.0007;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33027154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.449;LDAF=0.0055;AVGPOST=0.9919;RSQ=0.3986;ERATE=0.0030;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33027283 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.875;LDAF=0.2063;AVGPOST=0.8999;RSQ=0.7772;ERATE=0.0087;THETA=0.0006;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 33027335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.393;LDAF=0.0022;AVGPOST=0.9976;RSQ=0.5787;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33027522 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9978;RSQ=0.8696;ERATE=0.0004;THETA=0.0020;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33027666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0250;AVGPOST=0.9992;RSQ=0.9865;ERATE=0.0004;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 33027832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9279;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33027943 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.925;LDAF=0.0993;AVGPOST=0.9937;RSQ=0.9721;ERATE=0.0006;THETA=0.0005;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 33028014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4091;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33028147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0480;AVGPOST=0.9971;RSQ=0.9747;ERATE=0.0005;THETA=0.0009;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 33028243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9229;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33028247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6524;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33028450 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.981;LDAF=0.2650;AVGPOST=0.9868;RSQ=0.9754;ERATE=0.0008;THETA=0.0008;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 33028483 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7359;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33028528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0046;AVGPOST=0.9984;RSQ=0.8397;ERATE=0.0005;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33028590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9079;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33028595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0622;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 33028665 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8110;ERATE=0.0005;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33028697 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0623;AVGPOST=0.9996;RSQ=0.9972;ERATE=0.0004;THETA=0.0009;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 33028720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7717;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33028761 . CA C 212 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.7861;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33028765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.7768;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33028938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0042;AVGPOST=0.9952;RSQ=0.5528;ERATE=0.0006;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33028946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.790;LDAF=0.0073;AVGPOST=0.9955;RSQ=0.7528;ERATE=0.0004;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33028985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3705;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33028993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.656;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5913;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33029004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6564;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33029121 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33029276 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9416;ERATE=0.0004;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33029348 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0248;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 33029364 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.0859;AVGPOST=0.9967;RSQ=0.9845;ERATE=0.0004;THETA=0.0013;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 33029738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0034;AVGPOST=0.9941;RSQ=0.3234;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33029756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4324;ERATE=0.0005;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33029832 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9225;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33029969 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0869;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0007;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 33030039 . TAG T 5484 PASS INDEL;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0263;AVGPOST=0.9975;RSQ=0.9576;ERATE=0.0004;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33030045 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8914;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33030055 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4900;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33030417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7343;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33030427 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33030537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1211;AVGPOST=0.9988;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 33030571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5357;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33030587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6260;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33030592 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9465;ERATE=0.0003;THETA=0.0068;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33030597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0035;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33030653 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8899;ERATE=0.0003;THETA=0.0096;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33030772 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33030879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1173;AVGPOST=0.9969;RSQ=0.9887;ERATE=0.0008;THETA=0.0071;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 33030922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7424;ERATE=0.0004;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33031043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1096;AVGPOST=0.9948;RSQ=0.9802;ERATE=0.0004;THETA=0.0104;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 33031048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7459;ERATE=0.0005;THETA=0.0050;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33031061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.9204;ERATE=0.0004;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33031075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0041;AVGPOST=0.9980;RSQ=0.7930;ERATE=0.0009;THETA=0.0035;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33031081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0095;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33031156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7212;ERATE=0.0004;THETA=0.0063;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33031272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.718;LDAF=0.0108;AVGPOST=0.9930;RSQ=0.7734;ERATE=0.0007;THETA=0.0031;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33031338 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.434;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33031370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0835;AVGPOST=0.9914;RSQ=0.9600;ERATE=0.0006;THETA=0.0048;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 33031432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0049;AVGPOST=0.9989;RSQ=0.9209;ERATE=0.0003;THETA=0.0191;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33031448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.948;LDAF=0.0198;AVGPOST=0.9965;RSQ=0.9334;ERATE=0.0005;THETA=0.0130;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33031602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.948;LDAF=0.0524;AVGPOST=0.9886;RSQ=0.9236;ERATE=0.0009;THETA=0.0021;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 33031607 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.550;LDAF=0.0043;AVGPOST=0.9956;RSQ=0.6042;ERATE=0.0007;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33031661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6500;ERATE=0.0005;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33031671 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.512;LDAF=0.0042;AVGPOST=0.9940;RSQ=0.4033;ERATE=0.0008;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33031681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.581;LDAF=0.0052;AVGPOST=0.9924;RSQ=0.4773;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33031686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.920;LDAF=0.0195;AVGPOST=0.9964;RSQ=0.9335;ERATE=0.0003;THETA=0.0053;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33031687 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.575;LDAF=0.0041;AVGPOST=0.9940;RSQ=0.3468;ERATE=0.0013;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33031696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7909;ERATE=0.0006;THETA=0.0021;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33031745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0055;AVGPOST=0.9955;RSQ=0.6324;ERATE=0.0006;THETA=0.0068;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33031763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.937;LDAF=0.0222;AVGPOST=0.9925;RSQ=0.8628;ERATE=0.0006;THETA=0.0012;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 33031809 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.969;LDAF=0.1258;AVGPOST=0.9866;RSQ=0.9538;ERATE=0.0008;THETA=0.0027;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 33031841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.951;LDAF=0.1179;AVGPOST=0.9787;RSQ=0.9299;ERATE=0.0006;THETA=0.0010;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 33031842 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0048;AVGPOST=0.9986;RSQ=0.8755;ERATE=0.0008;THETA=0.0047;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33031954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.9912;AVGPOST=0.9979;RSQ=0.9007;ERATE=0.0006;THETA=0.0019;AC=2165;AN=2184 GT:DS:GL:BD 0.99130034 1 1 33031955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9581;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33032125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7509;ERATE=0.0019;THETA=0.0069;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33032162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.968;LDAF=0.0962;AVGPOST=0.9907;RSQ=0.9634;ERATE=0.0005;THETA=0.0008;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 33032271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4365;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032279 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0104;AVGPOST=0.9991;RSQ=0.9644;ERATE=0.0003;THETA=0.0031;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33032382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8799;ERATE=0.0010;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33032383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5249;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0025;AVGPOST=0.9982;RSQ=0.6855;ERATE=0.0016;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33032584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.6957;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33032644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33032697 rs71570164 T TTTTG 14004 PASS INDEL;BAVGPOST=0.974;BRSQ=0.904;LDAF=0.1438;AVGPOST=0.9859;RSQ=0.9593;ERATE=0.0007;THETA=0.0012;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 33032712 . T TG 115 PASS INDEL;BAVGPOST=0.965;BRSQ=0.403;LDAF=0.0330;AVGPOST=0.9643;RSQ=0.5894;ERATE=0.0017;THETA=0.0049;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 33032727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.951;LDAF=0.0290;AVGPOST=0.9950;RSQ=0.9436;ERATE=0.0005;THETA=0.0024;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33032775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.964;LDAF=0.0218;AVGPOST=0.9964;RSQ=0.9412;ERATE=0.0004;THETA=0.0008;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 33032827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0056;AVGPOST=0.9976;RSQ=0.8417;ERATE=0.0005;THETA=0.0035;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33032897 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0081;AVGPOST=0.9954;RSQ=0.7664;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33032948 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.971;LDAF=0.1035;AVGPOST=0.9911;RSQ=0.9677;ERATE=0.0007;THETA=0.0033;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 33033086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8085;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33033107 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1440;AVGPOST=0.9960;RSQ=0.9883;ERATE=0.0003;THETA=0.0008;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 33033347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1477;AVGPOST=0.9973;RSQ=0.9915;ERATE=0.0006;THETA=0.0017;AC=323;AN=2184 GT:DS:GL:BD 0.14789377 0 1 33033412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9287;ERATE=0.0006;THETA=0.0060;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33033493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8968;ERATE=0.0003;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33033511 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.977;LDAF=0.2611;AVGPOST=0.9883;RSQ=0.9805;ERATE=0.0009;THETA=0.0123;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 33033558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0158;AVGPOST=0.9986;RSQ=0.9680;ERATE=0.0003;THETA=0.0019;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33033579 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7122;ERATE=0.0003;THETA=0.0074;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33033595 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.963;LDAF=0.0306;AVGPOST=0.9978;RSQ=0.9685;ERATE=0.0004;THETA=0.0141;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33033716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6395;ERATE=0.0003;THETA=0.0200;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33033749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8511;ERATE=0.0004;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33033830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0094;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33033905 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33034020 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0135;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33034142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33034177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8199;ERATE=0.0003;THETA=0.0130;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33034277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.935;LDAF=0.0214;AVGPOST=0.9965;RSQ=0.9281;ERATE=0.0003;THETA=0.0032;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 33034643 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.933;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8397;ERATE=0.0003;THETA=0.0093;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33034650 rs35901304 TG T 12748 PASS INDEL;BAVGPOST=0.990;BRSQ=0.944;LDAF=0.0791;AVGPOST=0.9887;RSQ=0.9464;ERATE=0.0012;THETA=0.0233;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 33034693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.913;LDAF=0.5163;AVGPOST=0.9470;RSQ=0.9238;ERATE=0.0143;THETA=0.0151;AC=1126;AN=2184 GT:DS:GL:BD 0.51556778 1 1 33034789 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.925;LDAF=0.0782;AVGPOST=0.9861;RSQ=0.9286;ERATE=0.0010;THETA=0.0198;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 33034802 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.954;LDAF=0.1312;AVGPOST=0.9866;RSQ=0.9584;ERATE=0.0006;THETA=0.0060;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 33034839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.944;LDAF=0.2063;AVGPOST=0.9721;RSQ=0.9397;ERATE=0.0122;THETA=0.0033;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 33034845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9543;ERATE=0.0003;THETA=0.0111;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33034849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8710;ERATE=0.0003;THETA=0.0109;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33034852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0173;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33034871 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.7970;ERATE=0.0003;THETA=0.0132;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33034916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.934;LDAF=0.5320;AVGPOST=0.9578;RSQ=0.9423;ERATE=0.0031;THETA=0.0049;AC=1164;AN=2184 GT:DS:GL:BD 0.53296703 1 1 33035073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33035106 . A AG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0027;AVGPOST=0.9954;RSQ=0.3271;ERATE=0.0005;THETA=0.0064;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33035127 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6756;ERATE=0.0004;THETA=0.0214;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33035362 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6588;ERATE=0.0005;THETA=0.0314;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33035391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0043;AVGPOST=0.9959;RSQ=0.6024;ERATE=0.0009;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33035456 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33035479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0086;AVGPOST=0.9991;RSQ=0.9516;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33035581 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.699;LDAF=0.0025;AVGPOST=0.9962;RSQ=0.4297;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33035597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0438;AVGPOST=0.9980;RSQ=0.9838;ERATE=0.0005;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 33035651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0540;AVGPOST=0.9968;RSQ=0.9761;ERATE=0.0004;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 33035661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.513;LDAF=0.0051;AVGPOST=0.9916;RSQ=0.2769;ERATE=0.0012;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33035713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0075;AVGPOST=0.9965;RSQ=0.8383;ERATE=0.0005;THETA=0.0019;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33035845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.919;LDAF=0.1139;AVGPOST=0.9867;RSQ=0.9540;ERATE=0.0007;THETA=0.0014;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 33035902 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0188;AVGPOST=0.9989;RSQ=0.9775;ERATE=0.0003;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33035948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0080;AVGPOST=0.9992;RSQ=0.9561;ERATE=0.0005;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33036040 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0445;AVGPOST=0.9995;RSQ=0.9952;ERATE=0.0003;THETA=0.0020;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 33036091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6021;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33036205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0271;AVGPOST=0.9946;RSQ=0.9279;ERATE=0.0003;THETA=0.0025;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33036225 . A AC 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5502;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33036298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1306;AVGPOST=0.9968;RSQ=0.9894;ERATE=0.0004;THETA=0.0010;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 33036361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1748;AVGPOST=0.9974;RSQ=0.9934;ERATE=0.0005;THETA=0.0016;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 33036440 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4762;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33036449 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0989;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0004;THETA=0.0008;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 33036497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.0382;AVGPOST=0.9985;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 33036511 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0105;AVGPOST=0.9991;RSQ=0.9690;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33036516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0084;AVGPOST=0.9977;RSQ=0.8725;ERATE=0.0007;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33036553 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9687;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33036591 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9687;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33036597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.0973;AVGPOST=0.9979;RSQ=0.9932;ERATE=0.0005;THETA=0.0008;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 33036629 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6729;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33036708 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0128;AVGPOST=0.9982;RSQ=0.9498;ERATE=0.0005;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33036816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0307;AVGPOST=0.9945;RSQ=0.9221;ERATE=0.0006;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 33036984 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.936;LDAF=0.0130;AVGPOST=0.9979;RSQ=0.9488;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33036998 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0049;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33037110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.7171;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33037133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.0068;AVGPOST=0.9931;RSQ=0.6193;ERATE=0.0012;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33037368 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.514;LDAF=0.0153;AVGPOST=0.9887;RSQ=0.7166;ERATE=0.0006;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33037403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.937;LDAF=0.1402;AVGPOST=0.9867;RSQ=0.9577;ERATE=0.0016;THETA=0.0010;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 33037408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0126;AVGPOST=0.9976;RSQ=0.9191;ERATE=0.0005;THETA=0.0032;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33037537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.939;LDAF=0.1356;AVGPOST=0.9923;RSQ=0.9754;ERATE=0.0004;THETA=0.0007;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 33037594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.1499;AVGPOST=0.9925;RSQ=0.9765;ERATE=0.0005;THETA=0.0006;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 33037780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0058;AVGPOST=0.9910;RSQ=0.3165;ERATE=0.0015;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33037811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.892;LDAF=0.0051;AVGPOST=0.9966;RSQ=0.7124;ERATE=0.0006;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33037909 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.913;LDAF=0.3599;AVGPOST=0.8975;RSQ=0.8433;ERATE=0.0192;THETA=0.0006;AC=812;AN=2184 GT:DS:GL:BD 0.37179488 0 1 33037917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6559;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33037956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0391;AVGPOST=0.9994;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 33038054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33038061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0064;AVGPOST=0.9963;RSQ=0.7883;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33038269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0030;AVGPOST=0.9977;RSQ=0.7021;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33038325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0094;AVGPOST=0.9983;RSQ=0.9244;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33038354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0477;AVGPOST=0.9991;RSQ=0.9927;ERATE=0.0005;THETA=0.0057;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 33038417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0214;AVGPOST=0.9984;RSQ=0.9646;ERATE=0.0003;THETA=0.0017;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 33038751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9720;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33039026 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.858;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8467;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33039267 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0379;AVGPOST=0.9983;RSQ=0.9851;ERATE=0.0004;THETA=0.0024;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 33039342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4768;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0031;AVGPOST=0.9973;RSQ=0.6507;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33039392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4251;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0994;AVGPOST=0.9970;RSQ=0.9860;ERATE=0.0004;THETA=0.0009;AC=216;AN=2184 GT:DS:GL:BD 0.09890110 0 1 33039490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.618;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4548;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0366;AVGPOST=0.9988;RSQ=0.9865;ERATE=0.0003;THETA=0.0017;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 33039536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039577 . C CG 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.703;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5888;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33039577 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1432;AVGPOST=0.9954;RSQ=0.9862;ERATE=0.0004;THETA=0.0056;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 33039672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0798;AVGPOST=0.9969;RSQ=0.9867;ERATE=0.0004;THETA=0.0071;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 33039673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0164;AVGPOST=0.9979;RSQ=0.9473;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33039802 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33039891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9823;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33040059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9816;ERATE=0.0004;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33040064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5465;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33040065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0379;AVGPOST=0.9983;RSQ=0.9829;ERATE=0.0004;THETA=0.0010;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 33040095 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33040414 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33040428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0473;AVGPOST=0.9993;RSQ=0.9930;ERATE=0.0003;THETA=0.0011;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 33040432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33040463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8706;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 33040559 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33040590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.553;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.5422;ERATE=0.0009;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33040669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5631;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33040685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0059;AVGPOST=0.9983;RSQ=0.8915;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33040711 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.6367;ERATE=0.0004;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33040857 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.591;LDAF=0.0152;AVGPOST=0.9841;RSQ=0.5961;ERATE=0.0053;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33040978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8532;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33041102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0475;AVGPOST=0.9996;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 33041143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0234;AVGPOST=0.9956;RSQ=0.9265;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 33041173 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7324;AVGPOST=0.9981;RSQ=0.9958;ERATE=0.0004;THETA=0.0007;AC=1601;AN=2184 GT:DS:GL:BD 0.73305863 1 1 33041189 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0033;AVGPOST=0.9994;RSQ=0.9184;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33041220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33041223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=0.9998;RSQ=0.9841;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33041268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2708;AVGPOST=0.9985;RSQ=0.9971;ERATE=0.0003;THETA=0.0037;AC=591;AN=2184 GT:DS:GL:BD 0.27060440 0 1 33041284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33041298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2321;AVGPOST=0.9975;RSQ=0.9942;ERATE=0.0005;THETA=0.0003;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 33041355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0617;AVGPOST=0.9980;RSQ=0.9862;ERATE=0.0003;THETA=0.0002;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 33041404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.748;LDAF=0.0152;AVGPOST=0.9915;RSQ=0.7940;ERATE=0.0005;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33041703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0025;AVGPOST=0.9983;RSQ=0.7469;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33041708 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5677;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33041727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4628;AVGPOST=0.9953;RSQ=0.9921;ERATE=0.0006;THETA=0.0004;AC=1010;AN=2184 GT:DS:GL:BD 0.46245420 0 1 33041731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0687;AVGPOST=0.9983;RSQ=0.9909;ERATE=0.0004;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 33041807 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2712;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0006;THETA=0.0004;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 33041826 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6330;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33041849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.3785;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33041860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4807;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33041941 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33041959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0036;AVGPOST=0.9981;RSQ=0.7803;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33042119 rs111763052 AG A 334 PASS INDEL;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9178;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33042215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0366;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 33042297 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33042318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3259;AVGPOST=0.9946;RSQ=0.9923;ERATE=0.0006;THETA=0.0003;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 33042337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5536;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33042350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9549;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33042369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6475;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33042383 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33042446 . TC T 100 PASS INDEL;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0026;AVGPOST=0.9957;RSQ=0.3635;ERATE=0.0007;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33042518 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.547;LDAF=0.0063;AVGPOST=0.9929;RSQ=0.5676;ERATE=0.0029;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33042538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.961;LDAF=0.1090;AVGPOST=0.9932;RSQ=0.9750;ERATE=0.0005;THETA=0.0002;AC=237;AN=2184 GT:DS:GL:BD 0.10851648 0 1 33042567 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33042622 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9721;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33042807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0403;AVGPOST=0.9998;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 33042850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8526;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33042896 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7595;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33042897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.769;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7566;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33042975 . TCA T 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4960;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33043064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9948;ERATE=0.0003;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33043146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8701;AVGPOST=0.9984;RSQ=0.9937;ERATE=0.0005;THETA=0.0005;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 33043228 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6255;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33043261 . T TA 62 PASS INDEL;BAVGPOST=0.995;BRSQ=0.464;LDAF=0.0123;AVGPOST=0.9831;RSQ=0.4586;ERATE=0.0030;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33043341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0012;AVGPOST=0.9981;RSQ=0.4089;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33043368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9991;RSQ=0.9702;ERATE=0.0005;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 33043372 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5765;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33043375 . GT G 244 PASS INDEL;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33043567 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33043576 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5258;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33043601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33043713 . GC G 323 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33043733 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6945;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33043809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0460;AVGPOST=0.9986;RSQ=0.9853;ERATE=0.0006;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 33043837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.903;LDAF=0.8440;AVGPOST=0.9592;RSQ=0.8882;ERATE=0.0074;THETA=0.0005;AC=1863;AN=2184 GT:DS:GL:BD 0.85302198 1 1 33043912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.964;LDAF=0.0685;AVGPOST=0.9966;RSQ=0.9830;ERATE=0.0004;THETA=0.0008;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 33043925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9588;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33044013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4871;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33044098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0359;AVGPOST=0.9993;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 33044264 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33044530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33044595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8742;AVGPOST=0.9984;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=1910;AN=2184 GT:DS:GL:BD 0.87454212 1 1 33044640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9197;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33044724 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4635;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=1012;AN=2184 GT:DS:GL:BD 0.46336997 0 1 33044725 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0055;AVGPOST=0.9979;RSQ=0.8750;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33044915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33044931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5068;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33044958 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0951;AVGPOST=0.9984;RSQ=0.9921;ERATE=0.0004;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 33045102 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9698;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33045136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33045207 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9330;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33045213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9819;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33045232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.966;LDAF=0.0955;AVGPOST=0.9984;RSQ=0.9935;ERATE=0.0003;THETA=0.0042;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 33045258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9286;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33045399 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.0949;AVGPOST=0.9984;RSQ=0.9925;ERATE=0.0004;THETA=0.0010;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 33045412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0949;AVGPOST=0.9979;RSQ=0.9902;ERATE=0.0004;THETA=0.0004;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 33045415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4647;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=1014;AN=2184 GT:DS:GL:BD 0.46428570 0 1 33045421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0004;AVGPOST=0.9995;RSQ=0.5338;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33045667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8873;ERATE=0.0007;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33045668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33045670 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0005;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33045711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33045843 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7478;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33045872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33045907 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8657;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33045954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9315;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33046138 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33046158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33046172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7393;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33046240 . G GT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7354;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33046280 . A AT 260 PASS INDEL;BAVGPOST=0.975;BRSQ=0.520;LDAF=0.0370;AVGPOST=0.9561;RSQ=0.4972;ERATE=0.0155;THETA=0.0011;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 33046304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1856;AVGPOST=0.9977;RSQ=0.9942;ERATE=0.0005;THETA=0.0017;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 33046367 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2470;AVGPOST=0.9941;RSQ=0.9900;ERATE=0.0007;THETA=0.0009;AC=539;AN=2184 GT:DS:GL:BD 0.24679486 0 1 33046451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0160;AVGPOST=0.9985;RSQ=0.9641;ERATE=0.0004;THETA=0.0014;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33046452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1863;AVGPOST=0.9955;RSQ=0.9892;ERATE=0.0009;THETA=0.0009;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 33046555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5919;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33046601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.759;LDAF=0.0075;AVGPOST=0.9945;RSQ=0.6981;ERATE=0.0006;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33046621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9985;RSQ=0.9272;ERATE=0.0004;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33046690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2479;AVGPOST=0.9967;RSQ=0.9937;ERATE=0.0005;THETA=0.0013;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 33046781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7451;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33046927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33046961 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6076;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33047041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0028;AVGPOST=0.9967;RSQ=0.6075;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33047085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2768;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0004;THETA=0.0026;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 33047086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0041;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33047123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7794;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33047130 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7660;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33047169 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8815;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33047276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33047300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.848;LDAF=0.0183;AVGPOST=0.9918;RSQ=0.8110;ERATE=0.0007;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 33047349 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0417;AVGPOST=0.9983;RSQ=0.9837;ERATE=0.0004;THETA=0.0007;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 33047376 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6701;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33047385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0099;AVGPOST=0.9980;RSQ=0.9139;ERATE=0.0008;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33047493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0164;AVGPOST=0.9993;RSQ=0.9798;ERATE=0.0004;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33047515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33047556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0029;AVGPOST=0.9955;RSQ=0.4074;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33047568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2211;AVGPOST=0.9958;RSQ=0.9913;ERATE=0.0006;THETA=0.0006;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 33047618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2602;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 33047688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0093;AVGPOST=0.9994;RSQ=0.9722;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33047705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1926;AVGPOST=0.9955;RSQ=0.9897;ERATE=0.0006;THETA=0.0009;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 33047818 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8085;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33047857 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6384;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33047865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5786;ERATE=0.0007;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33047891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8077;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33047910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0169;AVGPOST=0.9978;RSQ=0.9461;ERATE=0.0004;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33047927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0093;AVGPOST=0.9990;RSQ=0.9594;ERATE=0.0004;THETA=0.0108;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33047939 rs34314223 T TG 16639 PASS INDEL;BAVGPOST=0.973;BRSQ=0.943;LDAF=0.2421;AVGPOST=0.9766;RSQ=0.9574;ERATE=0.0010;THETA=0.0004;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 33047958 . G GA 718 PASS INDEL;BAVGPOST=0.938;BRSQ=0.797;LDAF=0.1692;AVGPOST=0.8968;RSQ=0.7195;ERATE=0.0049;THETA=0.0005;AC=337;AN=2184 GT:DS:GL:BD 0.15430403 0 1 33047960 . G GA 848 PASS INDEL;BAVGPOST=0.939;BRSQ=0.813;LDAF=0.1736;AVGPOST=0.8990;RSQ=0.7346;ERATE=0.0019;THETA=0.0013;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 33047963 rs67591515 GA G 7146 PASS INDEL;BAVGPOST=0.965;BRSQ=0.919;LDAF=0.2422;AVGPOST=0.9745;RSQ=0.9547;ERATE=0.0007;THETA=0.0011;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 33047964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.962;LDAF=0.2712;AVGPOST=0.9877;RSQ=0.9800;ERATE=0.0004;THETA=0.0018;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 33047965 rs67591515 A AG 793 PASS INDEL;BAVGPOST=0.940;BRSQ=0.814;LDAF=0.1549;AVGPOST=0.9413;RSQ=0.8510;ERATE=0.0007;THETA=0.0065;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 33047965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9754;ERATE=0.0003;THETA=0.0062;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33048001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.2564;AVGPOST=0.9899;RSQ=0.9819;ERATE=0.0009;THETA=0.0049;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 33048224 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2480;AVGPOST=0.9899;RSQ=0.9820;ERATE=0.0007;THETA=0.0025;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 33048246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.942;LDAF=0.2478;AVGPOST=0.9888;RSQ=0.9792;ERATE=0.0006;THETA=0.0004;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 33048267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.945;LDAF=0.2548;AVGPOST=0.9874;RSQ=0.9778;ERATE=0.0006;THETA=0.0013;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 33048269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0042;AVGPOST=0.9967;RSQ=0.6983;ERATE=0.0004;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33048301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9601;ERATE=0.0004;THETA=0.0026;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33048330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.672;LDAF=0.0076;AVGPOST=0.9919;RSQ=0.5670;ERATE=0.0008;THETA=0.0049;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33048354 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.944;LDAF=0.2788;AVGPOST=0.9828;RSQ=0.9718;ERATE=0.0004;THETA=0.0016;AC=613;AN=2184 GT:DS:GL:BD 0.28067765 0 1 33048394 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.940;LDAF=0.2480;AVGPOST=0.9821;RSQ=0.9683;ERATE=0.0010;THETA=0.0035;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 33048396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.649;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33048434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.961;LDAF=0.1553;AVGPOST=0.9743;RSQ=0.9301;ERATE=0.0043;THETA=0.0028;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 33048492 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4239;ERATE=0.0005;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33048509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0058;AVGPOST=0.9966;RSQ=0.7638;ERATE=0.0008;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33048514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0058;AVGPOST=0.9963;RSQ=0.7467;ERATE=0.0005;THETA=0.0037;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33048515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.888;LDAF=0.0160;AVGPOST=0.9966;RSQ=0.9190;ERATE=0.0006;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33048556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.615;LDAF=0.0178;AVGPOST=0.9907;RSQ=0.7965;ERATE=0.0006;THETA=0.0015;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33048631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0104;AVGPOST=0.9949;RSQ=0.8202;ERATE=0.0008;THETA=0.0021;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33048658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.926;LDAF=0.1359;AVGPOST=0.9680;RSQ=0.9007;ERATE=0.0010;THETA=0.0018;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 33048723 . TTTC T 86 PASS INDEL;BAVGPOST=0.989;BRSQ=0.651;LDAF=0.0251;AVGPOST=0.9722;RSQ=0.5269;ERATE=0.0083;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33048845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.901;LDAF=0.2395;AVGPOST=0.9804;RSQ=0.9637;ERATE=0.0009;THETA=0.0030;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 33048855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.684;LDAF=0.1213;AVGPOST=0.9127;RSQ=0.6764;ERATE=0.0147;THETA=0.0030;AC=212;AN=2184 GT:DS:GL:BD 0.09706960 0 1 33048949 . C CCTT 4122 PASS INDEL;BAVGPOST=0.922;BRSQ=0.621;LDAF=0.1146;AVGPOST=0.9112;RSQ=0.6776;ERATE=0.0106;THETA=0.0008;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 33048972 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.632;LDAF=0.0321;AVGPOST=0.9697;RSQ=0.6269;ERATE=0.0021;THETA=0.0010;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 33048973 . TTCCTCTTCC T 16607 PASS INDEL;BAVGPOST=0.924;BRSQ=0.779;LDAF=0.1716;AVGPOST=0.9229;RSQ=0.8041;ERATE=0.0101;THETA=0.0022;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 33048988 rs71014922 T TTTCTTC 2221 PASS INDEL;BAVGPOST=0.939;BRSQ=0.686;LDAF=0.1147;AVGPOST=0.9284;RSQ=0.7294;ERATE=0.0080;THETA=0.0004;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 33049054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0030;AVGPOST=0.9956;RSQ=0.3961;ERATE=0.0014;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33049071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0161;AVGPOST=0.9987;RSQ=0.9709;ERATE=0.0005;THETA=0.0065;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33049097 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33049119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.7071;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33049142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9694;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33049163 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0028;AVGPOST=0.9980;RSQ=0.7115;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33049217 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33049241 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0186;AVGPOST=0.9974;RSQ=0.9414;ERATE=0.0006;THETA=0.0014;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 33049310 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9490;ERATE=0.0004;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33049348 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0077;AVGPOST=0.9984;RSQ=0.9219;ERATE=0.0004;THETA=0.0012;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33049398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2789;AVGPOST=0.9980;RSQ=0.9963;ERATE=0.0006;THETA=0.0009;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 33049465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8220;ERATE=0.0004;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33049500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33049563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9837;ERATE=0.0004;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33049657 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33049721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33049722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2537;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0006;THETA=0.0008;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 33049770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33049923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0264;AVGPOST=0.9989;RSQ=0.9831;ERATE=0.0005;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33050129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0055;AVGPOST=0.9968;RSQ=0.7658;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33050204 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33050236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8804;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33050332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0418;AVGPOST=0.9996;RSQ=0.9957;ERATE=0.0004;THETA=0.0023;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 33050356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0142;AVGPOST=0.9985;RSQ=0.9638;ERATE=0.0004;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 33050417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7495;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33050454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0431;AVGPOST=0.9990;RSQ=0.9901;ERATE=0.0004;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 33050541 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7385;AVGPOST=0.9970;RSQ=0.9941;ERATE=0.0004;THETA=0.0027;AC=1612;AN=2184 GT:DS:GL:BD 0.73809522 1 1 33050571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9338;ERATE=0.0005;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33050577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33050649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.937;LDAF=0.9809;AVGPOST=0.9960;RSQ=0.9192;ERATE=0.0005;THETA=0.0075;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 33050888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.472;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5023;ERATE=0.0007;THETA=0.0072;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33051045 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.958;LDAF=0.9583;AVGPOST=0.9942;RSQ=0.9474;ERATE=0.0005;THETA=0.0052;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 33051059 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.4984;ERATE=0.0004;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33051089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5089;ERATE=0.0003;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33051178 . TG T 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5022;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33051254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0120;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33051570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5742;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33051612 . T TG 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.4206;ERATE=0.0005;THETA=0.0036;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33051695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33051933 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0079;AVGPOST=0.9988;RSQ=0.9354;ERATE=0.0004;THETA=0.0015;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33051967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0047;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33051998 . GCTGA G 3857 PASS INDEL;BAVGPOST=0.991;BRSQ=0.813;LDAF=0.0181;AVGPOST=0.9898;RSQ=0.8029;ERATE=0.0005;THETA=0.0046;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33052029 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.857;LDAF=0.0173;AVGPOST=0.9952;RSQ=0.8746;ERATE=0.0006;THETA=0.0046;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33052086 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7772;ERATE=0.0003;THETA=0.0052;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33052103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0057;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33052123 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0047;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33052175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.5753;AVGPOST=0.9927;RSQ=0.9902;ERATE=0.0004;THETA=0.0007;AC=1253;AN=2184 GT:DS:GL:BD 0.57371795 1 1 33052189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33052195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.5535;AVGPOST=0.9930;RSQ=0.9914;ERATE=0.0005;THETA=0.0033;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 33052310 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0103;AVGPOST=0.9992;RSQ=0.9668;ERATE=0.0003;THETA=0.0024;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33052632 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33052638 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33052710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0171;AVGPOST=0.9994;RSQ=0.9838;ERATE=0.0004;THETA=0.0002;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33052768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7297;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33052794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.913;LDAF=0.0199;AVGPOST=0.9940;RSQ=0.8728;ERATE=0.0005;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 33052896 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.923;LDAF=0.1559;AVGPOST=0.9747;RSQ=0.9339;ERATE=0.0008;THETA=0.0006;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 33052925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4734;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33052955 rs67116402 CA C 7411 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0527;AVGPOST=0.9972;RSQ=0.9806;ERATE=0.0005;THETA=0.0009;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 33052980 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.917;LDAF=0.0853;AVGPOST=0.9839;RSQ=0.9264;ERATE=0.0004;THETA=0.0010;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 33053036 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.988;LDAF=0.4278;AVGPOST=0.9875;RSQ=0.9823;ERATE=0.0007;THETA=0.0017;AC=941;AN=2184 GT:DS:GL:BD 0.43086082 0 1 33053082 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0523;AVGPOST=0.9981;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 33053115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8390;ERATE=0.0005;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33053121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0070;AVGPOST=0.9976;RSQ=0.8791;ERATE=0.0003;THETA=0.0027;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33053182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.685;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33053253 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5971;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33053273 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0062;AVGPOST=0.9971;RSQ=0.8302;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33053323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0171;AVGPOST=0.9993;RSQ=0.9811;ERATE=0.0005;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33053405 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7718;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33053411 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053461 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9309;ERATE=0.0003;THETA=0.0017;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33053611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9788;ERATE=0.0003;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33053617 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.9021;ERATE=0.0004;THETA=0.0030;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33053619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0609;AVGPOST=0.9989;RSQ=0.9935;ERATE=0.0003;THETA=0.0041;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 33053684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5598;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053818 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9262;ERATE=0.0003;THETA=0.0021;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33053828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33053886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0632;AVGPOST=0.9987;RSQ=0.9927;ERATE=0.0003;THETA=0.0044;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 33054218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0175;AVGPOST=0.9983;RSQ=0.9620;ERATE=0.0004;THETA=0.0013;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33054247 . CCTT C 7289 PASS INDEL;BAVGPOST=0.992;BRSQ=0.930;LDAF=0.0446;AVGPOST=0.9933;RSQ=0.9445;ERATE=0.0007;THETA=0.0047;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 33054326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.942;LDAF=0.0303;AVGPOST=0.9972;RSQ=0.9603;ERATE=0.0004;THETA=0.0011;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33054376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0032;AVGPOST=0.9976;RSQ=0.7353;ERATE=0.0004;THETA=0.0075;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33054377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0686;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0003;THETA=0.0085;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 33054387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33054443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0040;AVGPOST=0.9987;RSQ=0.8674;ERATE=0.0003;THETA=0.0038;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33054570 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0075;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33054571 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33054582 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.968;LDAF=0.0741;AVGPOST=0.9921;RSQ=0.9628;ERATE=0.0018;THETA=0.0093;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 33054635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.889;LDAF=0.0200;AVGPOST=0.9950;RSQ=0.9082;ERATE=0.0006;THETA=0.0118;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 33054783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0006;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33054785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9878;ERATE=0.0003;THETA=0.0100;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33054821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7950;ERATE=0.0003;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33054844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8162;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33054891 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9795;ERATE=0.0003;THETA=0.0104;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33054960 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6204;ERATE=0.0004;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33055124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.940;LDAF=0.0584;AVGPOST=0.9910;RSQ=0.9470;ERATE=0.0003;THETA=0.0109;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 33055141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6754;ERATE=0.0010;THETA=0.0110;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33055192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7867;ERATE=0.0004;THETA=0.0189;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33055281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4655;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33055290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5403;ERATE=0.0005;THETA=0.0070;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33055331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6594;ERATE=0.0004;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33055413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.924;LDAF=0.0577;AVGPOST=0.9910;RSQ=0.9411;ERATE=0.0008;THETA=0.0164;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 33055426 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.879;LDAF=0.1675;AVGPOST=0.9533;RSQ=0.8898;ERATE=0.0055;THETA=0.0062;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 33055609 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.836;LDAF=0.0768;AVGPOST=0.9654;RSQ=0.8252;ERATE=0.0011;THETA=0.0168;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 33055614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7034;ERATE=0.0004;THETA=0.0159;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33055656 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.800;LDAF=0.0148;AVGPOST=0.9937;RSQ=0.8432;ERATE=0.0003;THETA=0.0144;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33055671 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.475;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4256;ERATE=0.0005;THETA=0.0101;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33055818 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33055910 . GTTC G 1194 PASS INDEL;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0074;AVGPOST=0.9977;RSQ=0.8843;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33055940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33055953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33055966 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0713;AVGPOST=0.9956;RSQ=0.9754;ERATE=0.0003;THETA=0.0002;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 33056103 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33056324 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9442;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33056330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9450;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33056334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33056335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056336 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33056356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33056482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33056595 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9854;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33056674 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0011;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33056751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33056821 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33056841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33056848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33056876 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9841;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33056904 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4822;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8923;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0072;AVGPOST=0.9974;RSQ=0.8601;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33057214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1368;AVGPOST=0.9965;RSQ=0.9898;ERATE=0.0004;THETA=0.0005;AC=297;AN=2184 GT:DS:GL:BD 0.13598901 0 1 33057265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7696;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057283 . A AT 2274 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9802;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33057308 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0119;AVGPOST=0.9963;RSQ=0.8861;ERATE=0.0007;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33057315 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33057347 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4956;AVGPOST=0.9943;RSQ=0.9911;ERATE=0.0008;THETA=0.0008;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 33057350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9694;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33057360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9410;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33057377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5569;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9411;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33057469 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6693;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057810 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4141;AVGPOST=0.9985;RSQ=0.9975;ERATE=0.0004;THETA=0.0010;AC=905;AN=2184 GT:DS:GL:BD 0.41437730 0 1 33057904 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057913 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33057995 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33057999 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8517;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33058008 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33058022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1368;AVGPOST=0.9987;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 33058067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5071;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0004;THETA=0.0007;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 33058142 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33058235 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058312 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058441 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0013;AVGPOST=1.0000;RSQ=0.9839;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33058484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0367;AVGPOST=0.9997;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 33058567 . TG T 167 PASS INDEL;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7584;ERATE=0.0004;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33058652 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9172;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33058755 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33058822 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0246;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 33059330 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9360;ERATE=0.0010;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33059341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33059353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33059560 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33059621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059634 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059692 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059693 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059791 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7797;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33059898 . A AC 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9290;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33059965 . C CA 940 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9539;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33059966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33059973 . T TCA 147 PASS INDEL;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33060001 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060026 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9729;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33060105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33060152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7882;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060217 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0057;AVGPOST=0.9993;RSQ=0.9539;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33060295 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8230;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33060327 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33060405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 33060452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33060515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0229;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 33060557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33060577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33060593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0262;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33060673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8665;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0660;AVGPOST=0.9963;RSQ=0.9813;ERATE=0.0030;THETA=0.0006;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 33060750 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0759;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 33060774 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9165;ERATE=0.0008;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33060789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0498;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 33060821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33060822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33060842 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33060878 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9038;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33061108 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33061225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33061240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33061253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5503;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33061324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9866;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33061345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7944;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33061383 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0064;AVGPOST=0.9985;RSQ=0.9163;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33061398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061628 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6828;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33061688 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33061724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33061759 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7775;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9406;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0071;AVGPOST=0.9983;RSQ=0.9017;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33061845 . A AGT 255 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8646;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33061853 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1691;AVGPOST=0.9984;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 33062081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062089 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33062305 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7726;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33062367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8373;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33062410 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7827;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33062479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5741;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33062551 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4509;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062707 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4551;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.8080;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33062807 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062836 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5735;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062887 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5265;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33062992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0674;AVGPOST=0.9980;RSQ=0.9880;ERATE=0.0003;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 33063192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33063354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33063489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8313;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33063731 . GCA G 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0077;AVGPOST=0.9919;RSQ=0.5697;ERATE=0.0006;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33063893 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.8079;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33063979 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9526;AVGPOST=0.9968;RSQ=0.9701;ERATE=0.0006;THETA=0.0004;AC=2081;AN=2184 GT:DS:GL:BD 0.95283884 1 1 33064188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.489;LDAF=0.0047;AVGPOST=0.9955;RSQ=0.6124;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33064327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.840;LDAF=0.0121;AVGPOST=0.9967;RSQ=0.8787;ERATE=0.0005;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33064736 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9130;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33064914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0037;AVGPOST=0.9980;RSQ=0.7578;ERATE=0.0007;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33064934 . AAG A 68 PASS INDEL;BAVGPOST=0.994;BRSQ=0.575;LDAF=0.0252;AVGPOST=0.9702;RSQ=0.5091;ERATE=0.0059;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33064952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.7176;ERATE=0.0004;THETA=0.0035;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33064972 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0162;AVGPOST=0.9985;RSQ=0.9602;ERATE=0.0004;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33065054 . CT C 93 PASS INDEL;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4847;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33065114 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2109;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=459;AN=2184 GT:DS:GL:BD 0.21016483 0 1 33065163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1707;AVGPOST=0.9982;RSQ=0.9953;ERATE=0.0004;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 33065216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0038;AVGPOST=0.9969;RSQ=0.7276;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33065223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33065316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2113;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0005;THETA=0.0006;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 33065471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0025;AVGPOST=0.9964;RSQ=0.4768;ERATE=0.0008;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33065523 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5766;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33065532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8578;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33065619 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8047;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33065669 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33065697 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2097;AVGPOST=0.9969;RSQ=0.9926;ERATE=0.0007;THETA=0.0002;AC=458;AN=2184 GT:DS:GL:BD 0.20970696 0 1 33065785 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0162;AVGPOST=0.9967;RSQ=0.9206;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33065900 . AAG A 14 PASS INDEL;BAVGPOST=0.998;BRSQ=0.571;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.5978;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33066030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.950;BRSQ=0.804;LDAF=0.1786;AVGPOST=0.9312;RSQ=0.8029;ERATE=0.0134;THETA=0.0003;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 33066073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.903;LDAF=0.1207;AVGPOST=0.9716;RSQ=0.8944;ERATE=0.0114;THETA=0.0039;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 33067201 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0048;AVGPOST=0.9972;RSQ=0.7733;ERATE=0.0033;THETA=0.0030;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33067228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.939;LDAF=0.1390;AVGPOST=0.9895;RSQ=0.9663;ERATE=0.0005;THETA=0.0013;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 33067266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.895;LDAF=0.1420;AVGPOST=0.9564;RSQ=0.8535;ERATE=0.0173;THETA=0.0036;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 33067272 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.1059;AVGPOST=0.9963;RSQ=0.9841;ERATE=0.0003;THETA=0.0014;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 33067282 . CAG C 262 PASS INDEL;BAVGPOST=0.979;BRSQ=0.625;LDAF=0.0402;AVGPOST=0.9639;RSQ=0.6136;ERATE=0.0165;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33067630 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0160;AVGPOST=0.9979;RSQ=0.9394;ERATE=0.0006;THETA=0.0013;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33067649 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.749;LDAF=0.5399;AVGPOST=0.8505;RSQ=0.7795;ERATE=0.0640;THETA=0.0008;AC=1230;AN=2184 GT:DS:GL:BD 0.56318682 1 1 33068082 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.687;LDAF=0.0089;AVGPOST=0.9951;RSQ=0.8022;ERATE=0.0003;THETA=0.0089;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33068104 . A AT 46 PASS INDEL;BAVGPOST=0.998;BRSQ=0.772;LDAF=0.0060;AVGPOST=0.9953;RSQ=0.6833;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33068139 . TAGAG T 327 PASS INDEL;BAVGPOST=0.988;BRSQ=0.565;LDAF=0.0238;AVGPOST=0.9713;RSQ=0.5004;ERATE=0.0056;THETA=0.0040;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33068244 . CGGT C 1242 PASS INDEL;BAVGPOST=0.579;BRSQ=0.028;LDAF=0.7525;AVGPOST=0.6623;RSQ=0.2276;ERATE=0.0206;THETA=0.0035;AC=1922;AN=2184 GT:DS:GL:BD 0.88003665 1 1 33068363 . GGT G 111 PASS INDEL;BAVGPOST=0.388;BRSQ=0.014;LDAF=0.2888;AVGPOST=0.6019;RSQ=0.1774;ERATE=0.0215;THETA=0.0004;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 33068364 . GTAC G 1072 PASS INDEL;BAVGPOST=0.413;BRSQ=0.015;LDAF=0.6794;AVGPOST=0.5937;RSQ=0.2009;ERATE=0.0292;THETA=0.0015;AC=1743;AN=2184 GT:DS:GL:BD 0.79807693 1 1 33068365 rs66490414 AC A 410 PASS INDEL;BAVGPOST=0.740;BRSQ=0.003;LDAF=0.8928;AVGPOST=0.8204;RSQ=0.2199;ERATE=0.0067;THETA=0.0011;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 33068367 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.911;BRSQ=0.185;LDAF=0.1367;AVGPOST=0.7824;RSQ=0.2269;ERATE=0.0219;THETA=0.0017;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 33068377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.215;LDAF=0.0308;AVGPOST=0.9462;RSQ=0.2426;ERATE=0.0022;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33068385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.870;LDAF=0.0311;AVGPOST=0.9915;RSQ=0.8980;ERATE=0.0005;THETA=0.0025;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 33068451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.810;LDAF=0.0479;AVGPOST=0.9952;RSQ=0.9610;ERATE=0.0004;THETA=0.0022;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 33068525 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33068577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.613;LDAF=0.0324;AVGPOST=0.9694;RSQ=0.6238;ERATE=0.0143;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 33068585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.714;LDAF=0.0166;AVGPOST=0.9863;RSQ=0.7030;ERATE=0.0043;THETA=0.0010;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33068639 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8917;ERATE=0.0003;THETA=0.0029;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33068642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.798;LDAF=0.0212;AVGPOST=0.9870;RSQ=0.7594;ERATE=0.0080;THETA=0.0023;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33068721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.738;LDAF=0.0121;AVGPOST=0.9912;RSQ=0.7219;ERATE=0.0030;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33068762 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.971;LDAF=0.8841;AVGPOST=0.9883;RSQ=0.9658;ERATE=0.0064;THETA=0.0020;AC=1938;AN=2184 GT:DS:GL:BD 0.88736266 1 1 33068803 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33068908 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33068994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1114;AVGPOST=0.9981;RSQ=0.9937;ERATE=0.0003;THETA=0.0009;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 33069008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0402;AVGPOST=0.9980;RSQ=0.9820;ERATE=0.0003;THETA=0.0008;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 33069019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0096;AVGPOST=0.9941;RSQ=0.7588;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33069066 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.812;LDAF=0.0758;AVGPOST=0.9802;RSQ=0.8890;ERATE=0.0007;THETA=0.0015;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 33069099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.803;LDAF=0.0732;AVGPOST=0.9811;RSQ=0.8875;ERATE=0.0013;THETA=0.0005;AC=149;AN=2184 GT:DS:GL:BD 0.06822345 0 1 33069100 rs5772947 GC G 3834 PASS INDEL;BAVGPOST=0.675;BRSQ=0.429;LDAF=0.5515;AVGPOST=0.8062;RSQ=0.7006;ERATE=0.0114;THETA=0.0034;AC=1261;AN=2184 GT:DS:GL:BD 0.57738096 1 1 33069122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.340;LDAF=0.0388;AVGPOST=0.9510;RSQ=0.4835;ERATE=0.0016;THETA=0.0016;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33069394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.831;LDAF=0.0971;AVGPOST=0.9608;RSQ=0.8222;ERATE=0.0023;THETA=0.0006;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 33069440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.832;LDAF=0.0713;AVGPOST=0.9853;RSQ=0.9118;ERATE=0.0016;THETA=0.0020;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 33069501 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.471;LDAF=0.0242;AVGPOST=0.9863;RSQ=0.7838;ERATE=0.0006;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 33069513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.816;BRSQ=0.603;LDAF=0.7265;AVGPOST=0.7727;RSQ=0.5771;ERATE=0.0324;THETA=0.0081;AC=1739;AN=2184 GT:DS:GL:BD 0.79624540 1 1 33069516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.921;LDAF=0.1455;AVGPOST=0.9932;RSQ=0.9792;ERATE=0.0003;THETA=0.0013;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 33069865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.917;LDAF=0.5262;AVGPOST=0.9829;RSQ=0.9771;ERATE=0.0010;THETA=0.0004;AC=1147;AN=2184 GT:DS:GL:BD 0.52518314 1 1 33069867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.833;LDAF=0.0720;AVGPOST=0.9930;RSQ=0.9593;ERATE=0.0007;THETA=0.0059;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 33069928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.519;LDAF=0.0135;AVGPOST=0.9835;RSQ=0.5418;ERATE=0.0014;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33069941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.855;LDAF=0.0846;AVGPOST=0.9861;RSQ=0.9297;ERATE=0.0009;THETA=0.0009;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 33070037 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.852;LDAF=0.6752;AVGPOST=0.9150;RSQ=0.8595;ERATE=0.0085;THETA=0.0007;AC=1526;AN=2184 GT:DS:GL:BD 0.69871795 1 1 33070059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.824;LDAF=0.0302;AVGPOST=0.9976;RSQ=0.9681;ERATE=0.0004;THETA=0.0038;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33070267 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.690;LDAF=0.0124;AVGPOST=0.9854;RSQ=0.5404;ERATE=0.0037;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33070274 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.7406;AVGPOST=0.9925;RSQ=0.9874;ERATE=0.0006;THETA=0.0024;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 33070276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.785;LDAF=0.0222;AVGPOST=0.9948;RSQ=0.8978;ERATE=0.0004;THETA=0.0030;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 33070292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.675;LDAF=0.0104;AVGPOST=0.9885;RSQ=0.5790;ERATE=0.0043;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33070307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.596;LDAF=0.0021;AVGPOST=0.9969;RSQ=0.3507;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33070377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.824;LDAF=0.6252;AVGPOST=0.8746;RSQ=0.8136;ERATE=0.0276;THETA=0.0006;AC=1443;AN=2184 GT:DS:GL:BD 0.66071427 1 1 33070387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.770;LDAF=0.6298;AVGPOST=0.8473;RSQ=0.7681;ERATE=0.0153;THETA=0.0024;AC=1456;AN=2184 GT:DS:GL:BD 0.66666669 1 1 33070426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0104;AVGPOST=0.9980;RSQ=0.9151;ERATE=0.0003;THETA=0.0011;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33070478 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.714;LDAF=0.0071;AVGPOST=0.9972;RSQ=0.8378;ERATE=0.0004;THETA=0.0026;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33070481 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5963;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33070493 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.879;LDAF=0.7088;AVGPOST=0.9505;RSQ=0.9195;ERATE=0.0038;THETA=0.0013;AC=1575;AN=2184 GT:DS:GL:BD 0.72115386 1 1 33070528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.965;LDAF=0.7356;AVGPOST=0.9859;RSQ=0.9775;ERATE=0.0006;THETA=0.0012;AC=1610;AN=2184 GT:DS:GL:BD 0.73717946 1 1 33070589 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.647;LDAF=0.0032;AVGPOST=0.9962;RSQ=0.4514;ERATE=0.0007;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33070590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.470;LDAF=0.0037;AVGPOST=0.9953;RSQ=0.4675;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33070622 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.891;BRSQ=0.819;LDAF=0.6771;AVGPOST=0.8904;RSQ=0.8388;ERATE=0.0104;THETA=0.0084;AC=1549;AN=2184 GT:DS:GL:BD 0.70924908 1 1 33070689 . T TG 2822 PASS INDEL;BAVGPOST=0.570;BRSQ=0.419;LDAF=0.4556;AVGPOST=0.7048;RSQ=0.5950;ERATE=0.0109;THETA=0.0017;AC=1069;AN=2184 GT:DS:GL:BD 0.48946887 0 1 33070719 . G GT 440 PASS INDEL;BAVGPOST=0.514;BRSQ=0.283;LDAF=0.3737;AVGPOST=0.6884;RSQ=0.4968;ERATE=0.0097;THETA=0.0028;AC=777;AN=2184 GT:DS:GL:BD 0.35576922 0 1 33070721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.749;BRSQ=0.644;LDAF=0.6178;AVGPOST=0.7549;RSQ=0.6745;ERATE=0.0205;THETA=0.0047;AC=1486;AN=2184 GT:DS:GL:BD 0.68040293 1 1 33070796 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.407;LDAF=0.0410;AVGPOST=0.9525;RSQ=0.5188;ERATE=0.0029;THETA=0.0006;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 33070817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.7405;AVGPOST=0.9889;RSQ=0.9813;ERATE=0.0006;THETA=0.0029;AC=1620;AN=2184 GT:DS:GL:BD 0.74175823 1 1 33070872 . CG C 123 PASS INDEL;BAVGPOST=0.997;BRSQ=0.637;LDAF=0.0060;AVGPOST=0.9952;RSQ=0.6751;ERATE=0.0009;THETA=0.0056;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33070880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.534;LDAF=0.0128;AVGPOST=0.9884;RSQ=0.6132;ERATE=0.0005;THETA=0.0053;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33070890 . AG A 1990 PASS INDEL;BAVGPOST=0.804;BRSQ=0.208;LDAF=0.1570;AVGPOST=0.8679;RSQ=0.6011;ERATE=0.0077;THETA=0.0062;AC=290;AN=2184 GT:DS:GL:BD 0.13278389 0 1 33071143 . A AG 4764 PASS INDEL;BAVGPOST=0.557;BRSQ=0.301;LDAF=0.6681;AVGPOST=0.7195;RSQ=0.5862;ERATE=0.0053;THETA=0.0010;AC=1616;AN=2184 GT:DS:GL:BD 0.73992676 1 1 33071258 . G GA 1067 PASS INDEL;BAVGPOST=0.463;BRSQ=0.284;LDAF=0.5597;AVGPOST=0.6574;RSQ=0.4702;ERATE=0.0152;THETA=0.0058;AC=1335;AN=2184 GT:DS:GL:BD 0.61126375 1 1 33071260 . T TG 139 PASS INDEL;BAVGPOST=0.897;BRSQ=0.097;LDAF=0.0845;AVGPOST=0.8693;RSQ=0.2986;ERATE=0.0072;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33071262 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.967;LDAF=0.7295;AVGPOST=0.9640;RSQ=0.9395;ERATE=0.0008;THETA=0.0047;AC=1614;AN=2184 GT:DS:GL:BD 0.73901099 1 1 33071288 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.540;LDAF=0.0257;AVGPOST=0.9786;RSQ=0.6847;ERATE=0.0008;THETA=0.0048;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 33071342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.842;BRSQ=0.724;LDAF=0.6550;AVGPOST=0.8457;RSQ=0.7687;ERATE=0.0073;THETA=0.0040;AC=1509;AN=2184 GT:DS:GL:BD 0.69093406 1 1 33071369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.759;LDAF=0.0397;AVGPOST=0.9747;RSQ=0.7435;ERATE=0.0036;THETA=0.0100;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 33071612 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.862;LDAF=0.0748;AVGPOST=0.9903;RSQ=0.9424;ERATE=0.0006;THETA=0.0028;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 33071683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.719;LDAF=0.0404;AVGPOST=0.9711;RSQ=0.7058;ERATE=0.0052;THETA=0.0040;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 33071701 MERGED_DEL_2_2211 G ADELA . . SV;BAVGPOST=0.996;BRSQ=0.656;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8031;ERATE=0.0006;THETA=0.0136;CIEND=-62;91;CIPOS=-93;64;END=21760173;SOURCE=BreakDancer_21757273_21760182;EMBLdelly_21757278_21 GT:DS:GL:BD 0.00457875 0 1 33071793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.590;LDAF=0.0412;AVGPOST=0.9655;RSQ=0.6747;ERATE=0.0046;THETA=0.0101;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 33071947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0324;AVGPOST=0.9945;RSQ=0.9398;ERATE=0.0005;THETA=0.0012;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 33072032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0276;AVGPOST=0.9964;RSQ=0.9544;ERATE=0.0003;THETA=0.0048;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 33072132 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.569;LDAF=0.0059;AVGPOST=0.9928;RSQ=0.4809;ERATE=0.0008;THETA=0.0080;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33072153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.900;LDAF=0.0205;AVGPOST=0.9972;RSQ=0.9407;ERATE=0.0003;THETA=0.0056;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 33072164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.772;LDAF=0.1153;AVGPOST=0.9707;RSQ=0.8919;ERATE=0.0012;THETA=0.0010;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 33072185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.889;LDAF=0.0360;AVGPOST=0.9963;RSQ=0.9628;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 33072864 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6485;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33072992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33073060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33073417 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7936;AVGPOST=0.9991;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 33073530 . TTC T 76 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.9163;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33073674 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33073895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33073902 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9833;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33073906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4522;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=989;AN=2184 GT:DS:GL:BD 0.45283884 0 1 33073919 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33073969 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5076;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33073976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3881;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 33073984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0048;AVGPOST=0.9987;RSQ=0.8952;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33074037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074117 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6305;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9516;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33074173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4773;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074184 rs35787544 TA T 32813 PASS INDEL;BAVGPOST=0.993;BRSQ=0.983;LDAF=0.2414;AVGPOST=0.9954;RSQ=0.9908;ERATE=0.0007;THETA=0.0002;AC=527;AN=2184 GT:DS:GL:BD 0.24130036 0 1 33074467 . AG A 4916 PASS INDEL;BAVGPOST=0.988;BRSQ=0.973;LDAF=0.2387;AVGPOST=0.9940;RSQ=0.9878;ERATE=0.0005;THETA=0.0002;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 33074469 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074565 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5673;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074659 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6944;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33074723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0050;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33074772 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33074827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6015;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33074889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8342;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33074899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8675;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33075111 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8765;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33075162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8475;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33075218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33075584 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33075648 . CT C 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6637;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33075702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0003;AVGPOST=0.9993;RSQ=0.3496;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33075713 . CGTT C 467 PASS INDEL;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0061;AVGPOST=0.9969;RSQ=0.8073;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33075761 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33075812 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33075832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4246;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=928;AN=2184 GT:DS:GL:BD 0.42490843 0 1 33075863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7955;AVGPOST=0.9992;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=1739;AN=2184 GT:DS:GL:BD 0.79624540 1 1 33075892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0254;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0003;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 33075954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33075971 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33075999 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33076015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33076220 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33076316 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0005;THETA=0.0029;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33076317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33076683 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33076738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9889;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33076744 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33076797 . TTATCAAAGACCAC T 534 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6592;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33076844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6559;ERATE=0.0011;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33076891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33077011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33077033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33077284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2437;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 33077347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33077433 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 33077495 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33077506 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33077591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33077622 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 33077626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33077823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7880;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33077990 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33078085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33078130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33078150 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7059;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33078218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.7833;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33078392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.867;LDAF=0.0095;AVGPOST=0.9964;RSQ=0.8500;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33078482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5324;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33078485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33078498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9628;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33078563 . C CA 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6470;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33078602 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33078731 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8671;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33078846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3061;AVGPOST=0.9966;RSQ=0.9947;ERATE=0.0006;THETA=0.0004;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 33078919 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33079023 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.9030;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33079037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33079061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0371;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 33079433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33079436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9996;RSQ=0.9514;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33079489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4619;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33079543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33079597 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33079653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5548;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33079672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7049;AVGPOST=0.9909;RSQ=0.9849;ERATE=0.0005;THETA=0.0043;AC=1541;AN=2184 GT:DS:GL:BD 0.70558608 1 1 33079735 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3095;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0005;THETA=0.0003;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 33079765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33079831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0380;AVGPOST=0.9992;RSQ=0.9924;ERATE=0.0004;THETA=0.0003;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 33079902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7682;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33079990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5379;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080066 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6674;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9989;RSQ=0.9457;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33080219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080257 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9451;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33080269 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5697;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33080297 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9435;ERATE=0.0006;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33080322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080342 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9143;ERATE=0.0014;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33080400 . TG T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4622;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080433 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9231;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33080469 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3241;AVGPOST=0.9976;RSQ=0.9961;ERATE=0.0003;THETA=0.0013;AC=707;AN=2184 GT:DS:GL:BD 0.32371795 0 1 33080486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0024;AVGPOST=0.9978;RSQ=0.6445;ERATE=0.0004;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33080761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.749;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33080784 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0410;AVGPOST=0.9950;RSQ=0.9539;ERATE=0.0006;THETA=0.0008;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 33080831 rs71023286 C CG 55579 PASS INDEL;BAVGPOST=0.995;BRSQ=0.242;LDAF=0.9916;AVGPOST=0.9891;RSQ=0.5051;ERATE=0.0014;THETA=0.0006;AC=2171;AN=2184 GT:DS:GL:BD 0.99404764 1 1 33080848 . A AG 26 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6321;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33080861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0081;AVGPOST=0.9981;RSQ=0.9073;ERATE=0.0005;THETA=0.0019;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33080879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0376;AVGPOST=0.9988;RSQ=0.9873;ERATE=0.0005;THETA=0.0032;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 33081294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9652;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33081393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5519;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33081516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0456;AVGPOST=0.9981;RSQ=0.9855;ERATE=0.0004;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 33081614 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8716;ERATE=0.0017;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33081678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8164;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33081704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7040;AVGPOST=0.9964;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=1539;AN=2184 GT:DS:GL:BD 0.70467031 1 1 33081735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7743;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33081813 rs34201079 TC T 2798 PASS INDEL;BAVGPOST=0.992;BRSQ=0.839;LDAF=0.0283;AVGPOST=0.9901;RSQ=0.8723;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 33081824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33081834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8767;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33082009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8731;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33082122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33082198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3297;AVGPOST=0.9953;RSQ=0.9922;ERATE=0.0007;THETA=0.0007;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 33082230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6106;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33082244 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0061;AVGPOST=0.9972;RSQ=0.8302;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33082299 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33082322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33082349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1635;AVGPOST=0.9975;RSQ=0.9929;ERATE=0.0004;THETA=0.0006;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 33082439 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0888;AVGPOST=0.9971;RSQ=0.9847;ERATE=0.0009;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 33082505 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0097;AVGPOST=0.9973;RSQ=0.8880;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33082528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.1662;AVGPOST=0.9947;RSQ=0.9856;ERATE=0.0004;THETA=0.0005;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 33082532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4903;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33082565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0110;AVGPOST=0.9973;RSQ=0.9029;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33082658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0027;AVGPOST=0.9956;RSQ=0.3205;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33082681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.407;LDAF=0.0564;AVGPOST=0.9410;RSQ=0.5757;ERATE=0.0036;THETA=0.0014;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 33082829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.921;BRSQ=0.828;LDAF=0.6642;AVGPOST=0.7915;RSQ=0.6288;ERATE=0.0217;THETA=0.0014;AC=1547;AN=2184 GT:DS:GL:BD 0.70833331 1 1 33082837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.7400;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33082977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6070;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33083066 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8772;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33083109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.740;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6263;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33083170 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8837;ERATE=0.0004;THETA=0.0022;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33083176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33083230 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33083370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33083461 . C CA 21 PASS INDEL;BAVGPOST=0.996;BRSQ=0.371;LDAF=0.0096;AVGPOST=0.9888;RSQ=0.5379;ERATE=0.0017;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33083723 . TTTC T 611 PASS INDEL;BAVGPOST=0.998;BRSQ=0.849;LDAF=0.0077;AVGPOST=0.9985;RSQ=0.9109;ERATE=0.0009;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33083857 . C CT 55 PASS INDEL;BAVGPOST=0.997;BRSQ=0.688;LDAF=0.0063;AVGPOST=0.9964;RSQ=0.7930;ERATE=0.0005;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33083860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9414;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33084036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0708;AVGPOST=0.9971;RSQ=0.9855;ERATE=0.0005;THETA=0.0007;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 33084072 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33084136 . G GT 55 PASS INDEL;BAVGPOST=0.994;BRSQ=0.535;LDAF=0.0112;AVGPOST=0.9846;RSQ=0.4636;ERATE=0.0038;THETA=0.0014;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33084165 . G GT 203 PASS INDEL;BAVGPOST=0.991;BRSQ=0.492;LDAF=0.0125;AVGPOST=0.9844;RSQ=0.5023;ERATE=0.0038;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33084179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0184;AVGPOST=0.9983;RSQ=0.9633;ERATE=0.0004;THETA=0.0023;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33084229 . TCTTA T 370 PASS INDEL;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0095;AVGPOST=0.9946;RSQ=0.7745;ERATE=0.0013;THETA=0.0009;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33084479 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0081;AVGPOST=0.9969;RSQ=0.8357;ERATE=0.0004;THETA=0.0022;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33084596 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33084694 . CGT C 31 PASS INDEL;BAVGPOST=0.994;BRSQ=0.545;LDAF=0.0149;AVGPOST=0.9784;RSQ=0.3849;ERATE=0.0037;THETA=0.0015;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33084818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0741;AVGPOST=0.9867;RSQ=0.9221;ERATE=0.0029;THETA=0.0011;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 33084828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0041;AVGPOST=0.9955;RSQ=0.5350;ERATE=0.0010;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33084838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33084933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33084991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33084993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9330;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33085068 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0279;AVGPOST=0.9990;RSQ=0.9827;ERATE=0.0005;THETA=0.0012;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33085135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.641;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6696;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33085155 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.4655;AVGPOST=0.9651;RSQ=0.9438;ERATE=0.0008;THETA=0.0009;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 33085206 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9987;RSQ=0.8507;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33085267 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0066;AVGPOST=0.9968;RSQ=0.7984;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33085346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33085358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8070;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33085402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0013;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 33085444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33085546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33085662 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9998;RSQ=0.9872;ERATE=0.0003;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33085800 . GC G 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6469;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33085918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0073;AVGPOST=0.9972;RSQ=0.8430;ERATE=0.0008;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33086008 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7332;ERATE=0.0004;THETA=0.0031;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33086013 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33086249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33086415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4734;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33086433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.454;LDAF=0.0016;AVGPOST=0.9975;RSQ=0.3088;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33086478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.530;LDAF=0.0082;AVGPOST=0.9940;RSQ=0.6969;ERATE=0.0008;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33086518 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.467;LDAF=0.0113;AVGPOST=0.9845;RSQ=0.4382;ERATE=0.0017;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33086602 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.946;LDAF=0.0416;AVGPOST=0.9832;RSQ=0.8174;ERATE=0.0021;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 33086616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8374;ERATE=0.0004;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33086795 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6160;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33086821 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4705;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33087048 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33087049 rs72389919 CCT C 4323 PASS INDEL;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0277;AVGPOST=0.9994;RSQ=0.9892;ERATE=0.0004;THETA=0.0011;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 33087114 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.869;LDAF=0.0061;AVGPOST=0.9984;RSQ=0.8762;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33087174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6029;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33087185 . AG A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.6953;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33087314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7220;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33087320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7640;ERATE=0.0005;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33087321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33087344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0072;AVGPOST=0.9973;RSQ=0.8474;ERATE=0.0007;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33087375 . A AT 479 PASS INDEL;BAVGPOST=0.860;BRSQ=0.305;LDAF=0.1851;AVGPOST=0.7726;RSQ=0.3780;ERATE=0.0276;THETA=0.0004;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 33087425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.859;LDAF=0.0361;AVGPOST=0.9853;RSQ=0.8302;ERATE=0.0019;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 33087493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3903;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33087503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.585;LDAF=0.0025;AVGPOST=0.9975;RSQ=0.5894;ERATE=0.0006;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33087654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6109;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33087728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0098;AVGPOST=0.9991;RSQ=0.9574;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 33087770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0655;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 33087870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33087936 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0173;AVGPOST=0.9983;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 33087976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0649;AVGPOST=0.9988;RSQ=0.9919;ERATE=0.0004;THETA=0.0010;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 33088122 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7778;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33088156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6200;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33088186 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33088191 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0287;AVGPOST=0.9989;RSQ=0.9822;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 33088240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8713;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33088377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0279;AVGPOST=0.9989;RSQ=0.9866;ERATE=0.0004;THETA=0.0009;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 33088499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5895;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33088591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9153;ERATE=0.0003;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33088606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0942;AVGPOST=0.9985;RSQ=0.9930;ERATE=0.0004;THETA=0.0007;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 33088620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33088679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9823;ERATE=0.0003;THETA=0.0016;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33088700 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33088766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33088796 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8430;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33088902 . T TCTA 4415 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0157;AVGPOST=0.9981;RSQ=0.9544;ERATE=0.0004;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33088939 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33089045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33089057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8869;ERATE=0.0006;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33089119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33089175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9140;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33089226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9706;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33089284 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0081;AVGPOST=0.9992;RSQ=0.9601;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33089463 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9815;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 33089474 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0376;AVGPOST=0.9996;RSQ=0.9955;ERATE=0.0004;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 33089490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2880;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0003;THETA=0.0009;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 33089626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33089651 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33089868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5697;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33089889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.604;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33090010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0284;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 33090059 . GC G 240 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6459;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33090293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0661;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0011;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 33090394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33090762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0286;AVGPOST=0.9995;RSQ=0.9918;ERATE=0.0003;THETA=0.0008;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 33090763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.0610;AVGPOST=0.9978;RSQ=0.9861;ERATE=0.0003;THETA=0.0009;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 33090831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4662;ERATE=0.0005;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33090832 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0307;AVGPOST=0.9993;RSQ=0.9885;ERATE=0.0005;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 33090854 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7174;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33091213 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0288;AVGPOST=0.9975;RSQ=0.9662;ERATE=0.0004;THETA=0.0004;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 33091273 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0050;AVGPOST=0.9954;RSQ=0.6065;ERATE=0.0008;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33091337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0650;AVGPOST=0.9944;RSQ=0.9684;ERATE=0.0007;THETA=0.0072;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 33091353 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0199;AVGPOST=0.9943;RSQ=0.8914;ERATE=0.0008;THETA=0.0009;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33091428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.959;LDAF=0.0702;AVGPOST=0.9969;RSQ=0.9803;ERATE=0.0008;THETA=0.0007;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 33091429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.606;LDAF=0.0157;AVGPOST=0.9902;RSQ=0.7613;ERATE=0.0015;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 33091458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4198;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33091500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0519;AVGPOST=0.9960;RSQ=0.9721;ERATE=0.0008;THETA=0.0008;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 33091557 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4830;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33091603 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9881;ERATE=0.0003;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 33091665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0055;AVGPOST=0.9993;RSQ=0.9546;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33091743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0108;AVGPOST=0.9983;RSQ=0.9317;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33091768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0629;AVGPOST=0.9993;RSQ=0.9944;ERATE=0.0004;THETA=0.0007;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 33091801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33091968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4543;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0509;AVGPOST=0.9984;RSQ=0.9903;ERATE=0.0003;THETA=0.0009;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 33092161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6782;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33092185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1252;AVGPOST=0.9953;RSQ=0.9843;ERATE=0.0006;THETA=0.0009;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 33092227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33092403 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9336;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33092414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092431 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9995;RSQ=0.9910;ERATE=0.0004;THETA=0.0007;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 33092451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0140;AVGPOST=0.9973;RSQ=0.9294;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33092670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092722 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8192;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33092753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33092879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0137;AVGPOST=0.9948;RSQ=0.8450;ERATE=0.0005;THETA=0.0030;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33093080 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5039;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33093249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6683;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33093301 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093440 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6933;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093570 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093573 . AC A 93 PASS INDEL;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4936;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093680 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093703 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7934;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33093758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.9119;ERATE=0.0003;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33093966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33093982 . GA G 37642 PASS INDEL;BAVGPOST=0.989;BRSQ=0.391;LDAF=0.9812;AVGPOST=0.9716;RSQ=0.3765;ERATE=0.0076;THETA=0.0015;AC=2166;AN=2184 GT:DS:GL:BD 0.99175823 1 1 33093982 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.667;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5599;ERATE=0.0005;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33094066 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6274;ERATE=0.0007;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33094212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3903;ERATE=0.0005;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33094221 . C CT 147 PASS INDEL;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5439;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33094283 . C CA 278 PASS INDEL;BAVGPOST=0.968;BRSQ=0.477;LDAF=0.0541;AVGPOST=0.9318;RSQ=0.4560;ERATE=0.0128;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33094289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6971;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33094301 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5298;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33094421 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33094490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6943;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33094501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33094537 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8790;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33094586 . G GT 447 PASS INDEL;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0075;AVGPOST=0.9968;RSQ=0.8285;ERATE=0.0004;THETA=0.0018;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33094600 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7653;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33095065 . TTTA T 216 PASS INDEL;BAVGPOST=0.973;BRSQ=0.461;LDAF=0.0552;AVGPOST=0.9185;RSQ=0.3542;ERATE=0.0066;THETA=0.0012;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 33095117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.658;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.4867;ERATE=0.0008;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33095515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.309;LDAF=0.0102;AVGPOST=0.9825;RSQ=0.2431;ERATE=0.0018;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33096295 . C CCCGG 764 PASS INDEL;BAVGPOST=0.984;BRSQ=0.774;LDAF=0.0527;AVGPOST=0.9651;RSQ=0.7045;ERATE=0.0026;THETA=0.0010;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 33096818 . CGGGAGA C 89 PASS INDEL;BAVGPOST=0.990;BRSQ=0.208;LDAF=0.0163;AVGPOST=0.9760;RSQ=0.3739;ERATE=0.0015;THETA=0.0016;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33097122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.896;LDAF=0.0951;AVGPOST=0.9804;RSQ=0.9148;ERATE=0.0008;THETA=0.0012;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 33097152 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.969;LDAF=0.0976;AVGPOST=0.9961;RSQ=0.9842;ERATE=0.0004;THETA=0.0023;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 33097393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8471;ERATE=0.0005;THETA=0.0063;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33097429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.8994;ERATE=0.0004;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33097453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0066;AVGPOST=0.9980;RSQ=0.8959;ERATE=0.0005;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33097461 . C CA 700 PASS INDEL;BAVGPOST=0.932;BRSQ=0.458;LDAF=0.1193;AVGPOST=0.8594;RSQ=0.4453;ERATE=0.0305;THETA=0.0013;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 33097478 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0024;AVGPOST=0.9973;RSQ=0.5073;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33097497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.947;BRSQ=0.594;LDAF=0.0710;AVGPOST=0.9254;RSQ=0.5535;ERATE=0.0110;THETA=0.0021;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 33097591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.301;LDAF=0.0120;AVGPOST=0.9846;RSQ=0.4692;ERATE=0.0019;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33097661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0129;AVGPOST=0.9987;RSQ=0.9532;ERATE=0.0005;THETA=0.0016;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 33097823 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.969;LDAF=0.2098;AVGPOST=0.9956;RSQ=0.9896;ERATE=0.0004;THETA=0.0011;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 33097847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33097937 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.2513;AVGPOST=0.9956;RSQ=0.9918;ERATE=0.0007;THETA=0.0003;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 33097993 . TC T 151 PASS INDEL;BAVGPOST=0.998;BRSQ=0.777;LDAF=0.0058;AVGPOST=0.9968;RSQ=0.7883;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33098002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4277;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33098025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0026;AVGPOST=0.9968;RSQ=0.5642;ERATE=0.0004;THETA=0.0025;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33098182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0081;AVGPOST=0.9949;RSQ=0.7597;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33098229 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6714;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33098230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9449;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33098355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1046;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0007;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 33098377 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0101;AVGPOST=0.9991;RSQ=0.9612;ERATE=0.0003;THETA=0.0008;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33098408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7544;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33098414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8346;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33098468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0380;AVGPOST=0.9968;RSQ=0.9678;ERATE=0.0004;THETA=0.0025;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 33098469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8881;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33098479 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0178;AVGPOST=0.9968;RSQ=0.9337;ERATE=0.0007;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 33098596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6729;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33098618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0175;AVGPOST=0.9975;RSQ=0.9492;ERATE=0.0004;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33098723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3480;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33098794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.708;LDAF=0.0012;AVGPOST=0.9980;RSQ=0.2424;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33098806 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3758;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33098807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.895;LDAF=0.1980;AVGPOST=0.9748;RSQ=0.9402;ERATE=0.0016;THETA=0.0010;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 33098867 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9980;RSQ=0.8850;ERATE=0.0007;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33098991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7842;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33099101 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9277;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33099181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9734;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33099230 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.640;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5301;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33099231 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33099238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8918;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33099258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0155;AVGPOST=0.9992;RSQ=0.9820;ERATE=0.0003;THETA=0.0011;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33099312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1037;AVGPOST=0.9972;RSQ=0.9892;ERATE=0.0005;THETA=0.0009;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 33099334 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33099395 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5411;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33099408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9149;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33099411 . C CA 326 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9126;ERATE=0.0003;THETA=0.0048;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33099504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0027;AVGPOST=0.9976;RSQ=0.6352;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33099588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6711;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33099622 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9979;RSQ=0.8180;ERATE=0.0005;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33099720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5039;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33099723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8797;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33099802 . AAAAAG A 43 PASS INDEL;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6622;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33099866 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7610;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33099927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.643;LDAF=0.0231;AVGPOST=0.9753;RSQ=0.5905;ERATE=0.0051;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 33100096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5793;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33100249 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0224;AVGPOST=0.9977;RSQ=0.9545;ERATE=0.0004;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 33100277 . C CA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5466;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33100554 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33100595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9197;ERATE=0.0004;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33100599 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0074;AVGPOST=0.9980;RSQ=0.9031;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33100618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0070;AVGPOST=0.9982;RSQ=0.9075;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33100810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4004;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33100862 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0885;AVGPOST=0.9984;RSQ=0.9924;ERATE=0.0004;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 33100947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9540;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33100959 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0027;AVGPOST=0.9997;RSQ=0.9548;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33101014 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1066;AVGPOST=0.9976;RSQ=0.9894;ERATE=0.0005;THETA=0.0011;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 33101034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0127;AVGPOST=0.9991;RSQ=0.9677;ERATE=0.0003;THETA=0.0019;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 33101056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6813;ERATE=0.0004;THETA=0.0041;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33101074 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0089;AVGPOST=0.9987;RSQ=0.9341;ERATE=0.0003;THETA=0.0014;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33101220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33101288 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33101425 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6159;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33101464 . AT A 412 PASS INDEL;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0076;AVGPOST=0.9994;RSQ=0.9629;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33101586 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0077;AVGPOST=0.9992;RSQ=0.9519;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33101592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0068;AVGPOST=0.9960;RSQ=0.7774;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33101922 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.756;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5940;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33101992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.9980;AVGPOST=0.9987;RSQ=0.7383;ERATE=0.0004;THETA=0.0025;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 33102033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5661;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33102165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6381;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33102167 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.702;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8236;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33102209 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0203;AVGPOST=0.9996;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 33102240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9589;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33102245 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33102304 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33102452 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33102666 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7358;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33102685 . TC T 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0047;AVGPOST=0.9944;RSQ=0.5752;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33102762 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0911;AVGPOST=0.9993;RSQ=0.9965;ERATE=0.0003;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 33102792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8221;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33102900 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1836;AVGPOST=0.9983;RSQ=0.9952;ERATE=0.0004;THETA=0.0005;AC=402;AN=2184 GT:DS:GL:BD 0.18406594 0 1 33102968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33103048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6887;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33103156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0032;AVGPOST=0.9996;RSQ=0.9482;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33103281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33103316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9482;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33103369 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2682;AVGPOST=0.9985;RSQ=0.9969;ERATE=0.0006;THETA=0.0008;AC=586;AN=2184 GT:DS:GL:BD 0.26831502 0 1 33103500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33103853 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8278;ERATE=0.0008;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33103855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.881;LDAF=0.0135;AVGPOST=0.9972;RSQ=0.9242;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33103927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33103957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33104174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33104223 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2460;AVGPOST=0.9979;RSQ=0.9959;ERATE=0.0004;THETA=0.0005;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 33104335 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.875;LDAF=0.0144;AVGPOST=0.9978;RSQ=0.9399;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 33104371 . C CA 113 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5522;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33104637 . T TA 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5924;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33104752 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0926;AVGPOST=0.9960;RSQ=0.9816;ERATE=0.0008;THETA=0.0002;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 33105040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0193;AVGPOST=0.9950;RSQ=0.8941;ERATE=0.0010;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 33105067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.5646;AVGPOST=0.9908;RSQ=0.9871;ERATE=0.0010;THETA=0.0003;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 33105092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0049;AVGPOST=0.9939;RSQ=0.4993;ERATE=0.0008;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33105172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.660;LDAF=0.0050;AVGPOST=0.9952;RSQ=0.6567;ERATE=0.0006;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33105266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0019;AVGPOST=0.9970;RSQ=0.3224;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33105333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.971;LDAF=0.4652;AVGPOST=0.9735;RSQ=0.9678;ERATE=0.0036;THETA=0.0056;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 33105346 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0135;AVGPOST=0.9990;RSQ=0.9646;ERATE=0.0005;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33105433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7012;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33105554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33105694 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5811;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33105725 . CACTA C 88 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4728;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33105813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.653;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4719;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33106009 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.672;LDAF=0.0018;AVGPOST=0.9971;RSQ=0.4569;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33106029 . CTG C 274 PASS INDEL;BAVGPOST=0.985;BRSQ=0.656;LDAF=0.0404;AVGPOST=0.9596;RSQ=0.5942;ERATE=0.0083;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 33106214 . TG T 344 PASS INDEL;BAVGPOST=0.988;BRSQ=0.715;LDAF=0.0231;AVGPOST=0.9821;RSQ=0.6938;ERATE=0.0034;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 33106227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.835;LDAF=0.0280;AVGPOST=0.9892;RSQ=0.8497;ERATE=0.0016;THETA=0.0014;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 33106228 . GT G 66 PASS INDEL;BAVGPOST=0.978;BRSQ=0.481;LDAF=0.0392;AVGPOST=0.9490;RSQ=0.4830;ERATE=0.0118;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 33106228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8779;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33106325 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.394;LDAF=0.0025;AVGPOST=0.9967;RSQ=0.4499;ERATE=0.0009;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33106414 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.921;LDAF=0.5303;AVGPOST=0.9092;RSQ=0.8906;ERATE=0.0106;THETA=0.0020;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 33106426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0050;AVGPOST=0.9950;RSQ=0.5822;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33106468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0170;AVGPOST=0.9979;RSQ=0.9479;ERATE=0.0006;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 33106505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0170;AVGPOST=0.9989;RSQ=0.9742;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33106612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4851;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33106954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0444;AVGPOST=0.9955;RSQ=0.9626;ERATE=0.0004;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 33107103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33107117 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9427;ERATE=0.0003;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33107136 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7551;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33107146 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6074;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33107325 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33107350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5668;AVGPOST=0.9970;RSQ=0.9955;ERATE=0.0008;THETA=0.0005;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 33107402 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9121;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33107545 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5681;AVGPOST=0.9962;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=1243;AN=2184 GT:DS:GL:BD 0.56913918 1 1 33107614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9305;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33107645 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7594;ERATE=0.0005;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33107734 . TG T 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.767;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4623;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33107886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0179;AVGPOST=0.9966;RSQ=0.9352;ERATE=0.0002;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 33107915 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33107954 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9104;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33108101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6677;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33108120 . A AG 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0021;AVGPOST=0.9987;RSQ=0.7544;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33108211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33108305 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5665;AVGPOST=0.9984;RSQ=0.9975;ERATE=0.0005;THETA=0.0026;AC=1239;AN=2184 GT:DS:GL:BD 0.56730771 1 1 33108369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33108746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33108752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.877;LDAF=0.0098;AVGPOST=0.9963;RSQ=0.8673;ERATE=0.0005;THETA=0.0019;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33108799 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0700;AVGPOST=0.9975;RSQ=0.9879;ERATE=0.0002;THETA=0.0002;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 33108834 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33108884 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.564;LDAF=0.0049;AVGPOST=0.9968;RSQ=0.7584;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33108920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33108974 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33109008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0036;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33109031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9420;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33109181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33109210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9824;ERATE=0.0002;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33109246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33109297 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33109310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5710;AVGPOST=0.9988;RSQ=0.9982;ERATE=0.0002;THETA=0.0004;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 33109378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7705;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33109529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5407;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.850;LDAF=0.0126;AVGPOST=0.9956;RSQ=0.8671;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33109583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109681 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5316;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33109759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.1128;AVGPOST=0.9935;RSQ=0.9747;ERATE=0.0003;THETA=0.0009;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 33109912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33109995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9180;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33110082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33110104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33110106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33110324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8832;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33110355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7217;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33110437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5853;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33110467 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6486;AVGPOST=0.9956;RSQ=0.9923;ERATE=0.0009;THETA=0.0008;AC=1421;AN=2184 GT:DS:GL:BD 0.65064102 1 1 33110597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.5672;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0006;THETA=0.0003;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 33110673 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5140;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33110773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.973;LDAF=0.6465;AVGPOST=0.9932;RSQ=0.9889;ERATE=0.0004;THETA=0.0006;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 33110787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6844;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33110831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9981;RSQ=0.7878;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33110853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9989;RSQ=0.3191;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33110864 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33111016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8800;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33111049 . TG T 14512 PASS INDEL;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0731;AVGPOST=0.9967;RSQ=0.9829;ERATE=0.0004;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 33111139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6753;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33111308 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3914;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33111394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.929;LDAF=0.7205;AVGPOST=0.9716;RSQ=0.9504;ERATE=0.0007;THETA=0.0003;AC=1583;AN=2184 GT:DS:GL:BD 0.72481686 1 1 33111672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.957;LDAF=0.5297;AVGPOST=0.9750;RSQ=0.9688;ERATE=0.0009;THETA=0.0006;AC=1165;AN=2184 GT:DS:GL:BD 0.53342491 1 1 33111673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5277;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33111738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9624;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33111830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9994;RSQ=0.9265;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33112014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33112092 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33112124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1365;AVGPOST=0.9979;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 33112317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6012;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33112339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6987;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33112419 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2092;AVGPOST=0.9968;RSQ=0.9925;ERATE=0.0004;THETA=0.0005;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 33112533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4225;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33112556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7606;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33112610 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0045;AVGPOST=0.9959;RSQ=0.7026;ERATE=0.0005;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33112654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.862;LDAF=0.0164;AVGPOST=0.9965;RSQ=0.9115;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33112718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7437;ERATE=0.0004;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33112721 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0048;AVGPOST=0.9939;RSQ=0.4505;ERATE=0.0009;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33112848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0025;AVGPOST=0.9959;RSQ=0.3193;ERATE=0.0006;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33112926 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.935;LDAF=0.7059;AVGPOST=0.9559;RSQ=0.9274;ERATE=0.0050;THETA=0.0005;AC=1554;AN=2184 GT:DS:GL:BD 0.71153843 1 1 33112934 . CTTT C 81 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5687;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4978;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8364;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33113343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4741;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113350 rs111917834 C CA 18415 PASS INDEL;BAVGPOST=0.988;BRSQ=0.967;LDAF=0.2095;AVGPOST=0.9889;RSQ=0.9753;ERATE=0.0019;THETA=0.0007;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 33113418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33113619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33113647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33113725 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33113740 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8619;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33113751 . G GT 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7129;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33113885 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33113939 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0003;THETA=0.0024;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33113951 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33114050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.906;LDAF=0.7452;AVGPOST=0.9307;RSQ=0.8707;ERATE=0.0138;THETA=0.0005;AC=1655;AN=2184 GT:DS:GL:BD 0.75778389 1 1 33114076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6057;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33114320 . TG T 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.3957;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33114421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0076;AVGPOST=0.9961;RSQ=0.8289;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33114486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4604;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33114649 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5945;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33114740 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7658;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33114917 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.956;LDAF=0.2144;AVGPOST=0.9596;RSQ=0.9157;ERATE=0.0065;THETA=0.0005;AC=448;AN=2184 GT:DS:GL:BD 0.20512821 0 1 33115125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0074;AVGPOST=0.9980;RSQ=0.8836;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33115161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0116;AVGPOST=0.9985;RSQ=0.9431;ERATE=0.0006;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33115202 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5492;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33115349 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9303;ERATE=0.0003;THETA=0.0021;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33115547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.790;LDAF=0.0566;AVGPOST=0.9861;RSQ=0.8979;ERATE=0.0004;THETA=0.0004;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 33115709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.3487;AVGPOST=0.9932;RSQ=0.9891;ERATE=0.0007;THETA=0.0018;AC=762;AN=2184 GT:DS:GL:BD 0.34890109 0 1 33115741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9112;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33115744 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5148;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33115776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.777;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9054;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33115800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0021;AVGPOST=0.9966;RSQ=0.3461;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33115893 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33115940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.600;LDAF=0.0039;AVGPOST=0.9930;RSQ=0.3555;ERATE=0.0008;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33116020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.5210;ERATE=0.0006;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33116061 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.432;LDAF=0.0086;AVGPOST=0.9904;RSQ=0.5747;ERATE=0.0007;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33116100 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5967;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33116257 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.906;BRSQ=0.801;LDAF=0.3676;AVGPOST=0.8663;RSQ=0.7702;ERATE=0.0569;THETA=0.0030;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 33116304 . A AT 33806 PASS INDEL;BAVGPOST=0.999;BRSQ=0.427;LDAF=0.9941;AVGPOST=0.9928;RSQ=0.5513;ERATE=0.0008;THETA=0.0006;AC=2175;AN=2184 GT:DS:GL:BD 0.99587911 1 1 33116304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7423;AVGPOST=0.9942;RSQ=0.9887;ERATE=0.0005;THETA=0.0005;AC=1622;AN=2184 GT:DS:GL:BD 0.74267399 1 1 33116351 . CT C 248 PASS INDEL;BAVGPOST=0.894;BRSQ=0.298;LDAF=0.1641;AVGPOST=0.7873;RSQ=0.3532;ERATE=0.0321;THETA=0.0003;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 33116423 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0125;AVGPOST=0.9987;RSQ=0.9581;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 33116631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8963;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33116771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0033;AVGPOST=0.9971;RSQ=0.6755;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33116913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.629;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8011;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33116928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.335;LDAF=0.0229;AVGPOST=0.9694;RSQ=0.4855;ERATE=0.0027;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 33117030 . C CA 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4255;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117110 . AT A 2461 PASS INDEL;BAVGPOST=0.922;BRSQ=0.704;LDAF=0.1664;AVGPOST=0.9187;RSQ=0.7773;ERATE=0.0059;THETA=0.0021;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 33117506 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3189;ERATE=0.0006;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.3759;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117541 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7089;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117608 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117669 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7066;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33117776 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.770;LDAF=0.0067;AVGPOST=0.9958;RSQ=0.7773;ERATE=0.0005;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33117903 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3926;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33117949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4264;ERATE=0.0005;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33118092 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.602;LDAF=0.0060;AVGPOST=0.9977;RSQ=0.8262;ERATE=0.0007;THETA=0.0013;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 33118131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.869;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7692;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33118135 . CT C 71 PASS INDEL;BAVGPOST=0.972;BRSQ=0.390;LDAF=0.0458;AVGPOST=0.9367;RSQ=0.4322;ERATE=0.0114;THETA=0.0010;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 33118195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0092;AVGPOST=0.9946;RSQ=0.7537;ERATE=0.0010;THETA=0.0012;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33118281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.956;LDAF=0.1168;AVGPOST=0.9850;RSQ=0.9419;ERATE=0.0034;THETA=0.0010;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 33118411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33118519 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.553;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7887;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33118531 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7677;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33118593 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7934;ERATE=0.0004;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33118633 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0219;AVGPOST=0.9977;RSQ=0.9609;ERATE=0.0004;THETA=0.0007;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 33118665 . CAG C 5525 PASS INDEL;BAVGPOST=0.587;BRSQ=0.201;LDAF=0.6224;AVGPOST=0.6457;RSQ=0.3415;ERATE=0.0615;THETA=0.0013;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 33118665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1114;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0003;THETA=0.0010;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 33118786 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1563;AVGPOST=0.9972;RSQ=0.9915;ERATE=0.0004;THETA=0.0015;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 33118929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0031;AVGPOST=0.9989;RSQ=0.8401;ERATE=0.0003;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33118945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0019;AVGPOST=0.9975;RSQ=0.4856;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33119332 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6767;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33119377 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8750;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33119407 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.569;LDAF=0.0054;AVGPOST=0.9971;RSQ=0.7821;ERATE=0.0004;THETA=0.0038;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33119508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4827;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33119664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0031;AVGPOST=0.9990;RSQ=0.8587;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33119714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33119748 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0023;AVGPOST=0.9994;RSQ=0.8838;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33119876 . CTG C 1731 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0111;AVGPOST=0.9963;RSQ=0.8817;ERATE=0.0004;THETA=0.0015;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33119944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6980;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33119974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.843;LDAF=0.0155;AVGPOST=0.9982;RSQ=0.9488;ERATE=0.0004;THETA=0.0016;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 33120183 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.886;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9058;ERATE=0.0004;THETA=0.0018;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33120411 . AC A 540 PASS INDEL;BAVGPOST=0.986;BRSQ=0.749;LDAF=0.0294;AVGPOST=0.9820;RSQ=0.7439;ERATE=0.0006;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33120455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.722;LDAF=0.0269;AVGPOST=0.9905;RSQ=0.8619;ERATE=0.0008;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 33120466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.700;LDAF=0.0305;AVGPOST=0.9887;RSQ=0.8556;ERATE=0.0011;THETA=0.0015;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33120467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.721;LDAF=0.0316;AVGPOST=0.9866;RSQ=0.8340;ERATE=0.0010;THETA=0.0019;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33120476 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.623;LDAF=0.0412;AVGPOST=0.9651;RSQ=0.6643;ERATE=0.0051;THETA=0.0009;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 33120543 . TA T 1616 PASS INDEL;BAVGPOST=0.956;BRSQ=0.812;LDAF=0.1551;AVGPOST=0.9266;RSQ=0.7863;ERATE=0.0069;THETA=0.0018;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 33120543 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.756;LDAF=0.1756;AVGPOST=0.9118;RSQ=0.7574;ERATE=0.0183;THETA=0.0019;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 33120544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.538;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5706;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33120552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9455;ERATE=0.0005;THETA=0.0062;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33120571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.917;BRSQ=0.884;LDAF=0.5455;AVGPOST=0.9593;RSQ=0.9446;ERATE=0.0023;THETA=0.0015;AC=1196;AN=2184 GT:DS:GL:BD 0.54761904 1 1 33120678 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8909;ERATE=0.0004;THETA=0.0016;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33120697 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5070;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33120717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33120755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6305;ERATE=0.0006;THETA=0.0019;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33120857 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0028;AVGPOST=0.9983;RSQ=0.7846;ERATE=0.0005;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33121001 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7290;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33121099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.665;LDAF=0.0136;AVGPOST=0.9924;RSQ=0.7762;ERATE=0.0005;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33121155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.615;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4912;ERATE=0.0005;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33121164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.4722;ERATE=0.0008;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33121238 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9404;ERATE=0.0003;THETA=0.0040;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33121249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4648;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33121574 . TATATATATATATATATATATATA T 566 PASS INDEL;BAVGPOST=0.919;BRSQ=0.117;LDAF=0.1241;AVGPOST=0.8170;RSQ=0.3449;ERATE=0.0101;THETA=0.0013;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 33122061 . TATATA T 1877 PASS INDEL;BAVGPOST=0.475;BRSQ=0.163;LDAF=0.4567;AVGPOST=0.6554;RSQ=0.4190;ERATE=0.0171;THETA=0.0019;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 33122079 . TATA T 2109 PASS INDEL;BAVGPOST=0.455;BRSQ=0.174;LDAF=0.4968;AVGPOST=0.7084;RSQ=0.5089;ERATE=0.0066;THETA=0.0029;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 33122081 rs56928521 TA T 1951 PASS INDEL;BAVGPOST=0.447;BRSQ=0.173;LDAF=0.5144;AVGPOST=0.6877;RSQ=0.4707;ERATE=0.0105;THETA=0.0012;AC=1107;AN=2184 GT:DS:GL:BD 0.50686812 1 1 33122083 rs56928521 A ATAT 760 PASS INDEL;BAVGPOST=0.468;BRSQ=0.047;LDAF=0.3777;AVGPOST=0.6250;RSQ=0.2853;ERATE=0.0332;THETA=0.0009;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 33122084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0048;AVGPOST=0.9920;RSQ=0.3513;ERATE=0.0006;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33122335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4094;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33122467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9375;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33122493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0164;AVGPOST=0.9978;RSQ=0.9568;ERATE=0.0004;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 33122526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9783;ERATE=0.0003;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33122867 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.9227;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33122981 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0057;AVGPOST=0.9979;RSQ=0.8418;ERATE=0.0008;THETA=0.0038;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33122983 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7703;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33123000 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5044;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33123124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9741;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33123183 . GGT G 1250 PASS INDEL;BAVGPOST=0.945;BRSQ=0.827;LDAF=0.1784;AVGPOST=0.9839;RSQ=0.9589;ERATE=0.0006;THETA=0.0003;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 33123209 rs11343900 GT G 15899 PASS INDEL;BAVGPOST=0.989;BRSQ=0.964;LDAF=0.1855;AVGPOST=0.9940;RSQ=0.9840;ERATE=0.0005;THETA=0.0032;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 33123210 . TTTTG T 484 PASS INDEL;BAVGPOST=0.995;BRSQ=0.750;LDAF=0.0146;AVGPOST=0.9893;RSQ=0.6917;ERATE=0.0032;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 33123283 . G GC 46137 PASS INDEL;BAVGPOST=0.953;BRSQ=0.899;LDAF=0.7687;AVGPOST=0.9622;RSQ=0.9206;ERATE=0.0011;THETA=0.0006;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 33123355 rs5773398 CT C 43669 PASS INDEL;BAVGPOST=0.982;BRSQ=0.954;LDAF=0.7927;AVGPOST=0.9860;RSQ=0.9698;ERATE=0.0004;THETA=0.0004;AC=1736;AN=2184 GT:DS:GL:BD 0.79487181 1 1 33123356 rs56002689 TCAA T 86261 PASS INDEL;BAVGPOST=0.979;BRSQ=0.946;LDAF=0.7923;AVGPOST=0.9849;RSQ=0.9676;ERATE=0.0004;THETA=0.0004;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 33123357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8537;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33123412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33123431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0153;AVGPOST=0.9979;RSQ=0.9401;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33123504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7652;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0005;THETA=0.0010;AC=1672;AN=2184 GT:DS:GL:BD 0.76556778 1 1 33123665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6860;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33123670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33123672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5270;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33123780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33123793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8594;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33123807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7711;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=1685;AN=2184 GT:DS:GL:BD 0.77152014 1 1 33123839 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8502;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33123884 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0328;AVGPOST=0.9993;RSQ=0.9913;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 33123943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1773;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0004;THETA=0.0009;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 33123946 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5940;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33123950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.935;LDAF=0.7854;AVGPOST=0.9730;RSQ=0.9372;ERATE=0.0015;THETA=0.0006;AC=1729;AN=2184 GT:DS:GL:BD 0.79166669 1 1 33124191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.669;LDAF=0.0039;AVGPOST=0.9942;RSQ=0.3850;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33124287 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7645;AVGPOST=0.9977;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=1672;AN=2184 GT:DS:GL:BD 0.76556778 1 1 33124644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.613;LDAF=0.0040;AVGPOST=0.9972;RSQ=0.6906;ERATE=0.0004;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33124828 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6773;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33125053 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.699;LDAF=0.0179;AVGPOST=0.9848;RSQ=0.6664;ERATE=0.0018;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 33125244 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9987;RSQ=0.9821;ERATE=0.0003;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 33125672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0173;AVGPOST=0.9991;RSQ=0.9778;ERATE=0.0003;THETA=0.0010;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 33125680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9203;ERATE=0.0004;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33125746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0085;AVGPOST=0.9968;RSQ=0.8608;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33125763 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9583;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33125769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0054;AVGPOST=0.9973;RSQ=0.7825;ERATE=0.0008;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33125771 . G GCTAA 306 PASS INDEL;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0051;AVGPOST=0.9956;RSQ=0.6728;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33125838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33126037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0129;AVGPOST=0.9984;RSQ=0.9461;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 33126057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8520;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33126342 . A AG 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33126391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33126413 . GT G 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6599;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33126420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7899;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33126513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7339;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33126518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8745;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33126646 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33126670 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8982;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33126671 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8722;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33126863 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8166;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33126920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.941;LDAF=0.0109;AVGPOST=0.9985;RSQ=0.9485;ERATE=0.0004;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 33126921 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0225;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 33127077 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 33127165 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9411;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33127205 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33127415 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0094;AVGPOST=0.9984;RSQ=0.9353;ERATE=0.0004;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 33127616 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33127733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.8021;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33127774 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33127782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7238;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33127882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8086;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33128023 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0076;AVGPOST=0.9971;RSQ=0.8455;ERATE=0.0008;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33128101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.9171;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 33128153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9997;RSQ=0.9908;ERATE=0.0003;THETA=0.0015;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33128242 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0137;AVGPOST=0.9990;RSQ=0.9700;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 33128254 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.8196;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33128272 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33128466 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5250;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33128587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.876;LDAF=0.0081;AVGPOST=0.9968;RSQ=0.8501;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 33128735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33128807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33128845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5974;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33128942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33128988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7491;AVGPOST=0.9971;RSQ=0.9931;ERATE=0.0007;THETA=0.0005;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 33129047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33129133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33129144 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5113;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33129196 . TG T 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0038;AVGPOST=0.9975;RSQ=0.7414;ERATE=0.0004;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33129321 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.7914;AVGPOST=0.9947;RSQ=0.9876;ERATE=0.0007;THETA=0.0002;AC=1731;AN=2184 GT:DS:GL:BD 0.79258239 1 1 33129345 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.644;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7606;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33129362 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9213;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33129472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0052;AVGPOST=0.9992;RSQ=0.9296;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33129538 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.8799;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 33129579 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.8975;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33129639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 33129676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33129717 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.8979;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33129726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 33129792 . A AC 772 PASS INDEL;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0057;AVGPOST=0.9981;RSQ=0.8737;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 33129858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33129876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 33129897 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7489;AVGPOST=0.9972;RSQ=0.9942;ERATE=0.0007;THETA=0.0002;AC=1636;AN=2184 GT:DS:GL:BD 0.74908423 1 1 33129931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.7489;AVGPOST=0.9993;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 33130000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33130320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33130497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0540;AVGPOST=0.9972;RSQ=0.9777;ERATE=0.0003;THETA=0.0005;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 33130498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9011;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 33130572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1404;AVGPOST=0.9963;RSQ=0.9888;ERATE=0.0003;THETA=0.0003;AC=309;AN=2184 GT:DS:GL:BD 0.14148352 0 1 33130665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 33130759 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7899;AVGPOST=0.9979;RSQ=0.9946;ERATE=0.0003;THETA=0.0013;AC=1728;AN=2184 GT:DS:GL:BD 0.79120880 1 1 33130770 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33130796 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9650;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 33130858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8119;AVGPOST=0.9990;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=1775;AN=2184 GT:DS:GL:BD 0.81272894 1 1 33130971 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0043;AVGPOST=0.9979;RSQ=0.8288;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 33131206 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7049;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33131301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7603;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33131365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33131504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.927;LDAF=0.7568;AVGPOST=0.9352;RSQ=0.8648;ERATE=0.0248;THETA=0.0004;AC=1677;AN=2184 GT:DS:GL:BD 0.76785713 1 1 33131635 . CAG C 306 PASS INDEL;BAVGPOST=0.970;BRSQ=0.558;LDAF=0.0647;AVGPOST=0.9240;RSQ=0.4814;ERATE=0.0177;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 33131682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.776;LDAF=0.6524;AVGPOST=0.8782;RSQ=0.7542;ERATE=0.0822;THETA=0.0004;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 33131729 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33131746 . CAG C 222 PASS INDEL;BAVGPOST=0.982;BRSQ=0.631;LDAF=0.0346;AVGPOST=0.9614;RSQ=0.5224;ERATE=0.0133;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 33131760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.777;LDAF=0.0087;AVGPOST=0.9958;RSQ=0.8185;ERATE=0.0006;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 33131905 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0381;AVGPOST=0.9993;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 33132006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.7195;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33132096 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4943;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33132237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9784;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 33132385 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7604;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33132512 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4529;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33132518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.852;LDAF=0.0129;AVGPOST=0.9940;RSQ=0.8109;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 33132594 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8521;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 33132635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4261;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33132659 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0106;AVGPOST=0.9984;RSQ=0.9368;ERATE=0.0005;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33132669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0102;AVGPOST=0.9993;RSQ=0.9709;ERATE=0.0004;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 33132670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4936;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 33132680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.844;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7538;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 33133077 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0150;AVGPOST=0.9987;RSQ=0.9731;ERATE=0.0003;THETA=0.0012;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 33133090 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 33133100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.766;LDAF=0.0049;AVGPOST=0.9977;RSQ=0.8102;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0