1092 10000 1 69634638 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5417;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69634667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0668;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0003;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 69634712 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69634824 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69634852 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5262;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69635094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1860;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0003;THETA=0.0004;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 69635133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7248;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=1584;AN=2184 GT:DS:GL:BD 0.72527474 1 1 69635149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0347;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 69635209 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0377;AVGPOST=0.9994;RSQ=0.9924;ERATE=0.0003;THETA=0.0007;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 69635320 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69635352 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3758;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69635354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9117;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69635411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69635413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4484;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69635727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0375;AVGPOST=0.9993;RSQ=0.9917;ERATE=0.0004;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 69635866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0176;AVGPOST=0.9974;RSQ=0.9422;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69635933 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9535;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69636011 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7803;ERATE=0.0005;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69636185 . CCCA C 186 PASS INDEL;BAVGPOST=0.996;BRSQ=0.772;LDAF=0.0074;AVGPOST=0.9985;RSQ=0.9162;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69636224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5719;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69636258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4614;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69636261 . CCTGT C 134 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69636282 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9220;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69636352 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4468;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69636523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9507;ERATE=0.0004;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69636616 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.3242;AVGPOST=0.9921;RSQ=0.9862;ERATE=0.0015;THETA=0.0002;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 69636817 . CTT C 1342 PASS INDEL;BAVGPOST=0.997;BRSQ=0.873;LDAF=0.0106;AVGPOST=0.9948;RSQ=0.8211;ERATE=0.0004;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69636878 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.7345;AVGPOST=0.9973;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=1607;AN=2184 GT:DS:GL:BD 0.73580587 1 1 69636904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.2860;AVGPOST=0.9892;RSQ=0.9808;ERATE=0.0013;THETA=0.0003;AC=629;AN=2184 GT:DS:GL:BD 0.28800365 0 1 69636914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69636956 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4881;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69637159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3246;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 69637227 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69637260 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4467;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69637295 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.882;LDAF=0.0100;AVGPOST=0.9976;RSQ=0.9032;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69637383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5977;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69637434 . T TA 11 PASS INDEL;BAVGPOST=0.998;BRSQ=0.681;LDAF=0.0040;AVGPOST=0.9948;RSQ=0.5014;ERATE=0.0006;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69637516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6652;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69637647 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0115;AVGPOST=0.9996;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69637656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6348;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69637778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6060;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69637785 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0048;AVGPOST=0.9988;RSQ=0.8964;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69637867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.842;LDAF=0.0068;AVGPOST=0.9980;RSQ=0.8748;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69637906 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69637946 . CT C 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4501;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69638019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6578;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69638038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0375;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 69638221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9780;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69638306 . GAATGTTA G 1041 PASS INDEL;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0052;AVGPOST=0.9993;RSQ=0.9473;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69638322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69638374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7262;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=1587;AN=2184 GT:DS:GL:BD 0.72664833 1 1 69638402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69638408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69638574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69638575 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7408;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0002;AC=1619;AN=2184 GT:DS:GL:BD 0.74130034 1 1 69638643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6088;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69638675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3643;AVGPOST=0.9996;RSQ=0.9994;ERATE=0.0003;THETA=0.0002;AC=796;AN=2184 GT:DS:GL:BD 0.36446887 0 1 69638676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3241;AVGPOST=0.9955;RSQ=0.9929;ERATE=0.0009;THETA=0.0002;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 69638987 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69639059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9176;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69639329 . TG T 183 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8540;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69639447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0101;AVGPOST=0.9976;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69639529 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3244;AVGPOST=0.9995;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 69639706 . CAGG C 303 PASS INDEL;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0069;AVGPOST=0.9956;RSQ=0.7825;ERATE=0.0005;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69639785 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69640036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69640039 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69640054 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2516;AVGPOST=0.9963;RSQ=0.9927;ERATE=0.0006;THETA=0.0003;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 69640370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0113;AVGPOST=0.9991;RSQ=0.9632;ERATE=0.0003;THETA=0.0042;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69640399 . TAA T 247 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8516;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69640467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69640544 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7925;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69640742 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9562;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69640968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2588;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 69640989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.1697;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0004;THETA=0.0005;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 69641099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69641230 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9983;RSQ=0.7904;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69641333 . GCCA G 107 PASS INDEL;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0045;AVGPOST=0.9956;RSQ=0.5617;ERATE=0.0027;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69641354 . CACA C 21306 PASS INDEL;BAVGPOST=0.990;BRSQ=0.978;LDAF=0.2515;AVGPOST=0.9919;RSQ=0.9840;ERATE=0.0013;THETA=0.0006;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 69641360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1710;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=373;AN=2184 GT:DS:GL:BD 0.17078754 0 1 69641458 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9993;RSQ=0.9705;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69641560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69641695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69641738 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8481;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69641800 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5035;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69641802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2589;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0003;THETA=0.0002;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 69641822 . AAT A 5406 PASS INDEL;BAVGPOST=0.958;BRSQ=0.887;LDAF=0.2182;AVGPOST=0.9511;RSQ=0.8982;ERATE=0.0074;THETA=0.0004;AC=474;AN=2184 GT:DS:GL:BD 0.21703297 0 1 69641843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.607;LDAF=0.0085;AVGPOST=0.9892;RSQ=0.5317;ERATE=0.0021;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69641887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.2619;AVGPOST=0.9959;RSQ=0.9916;ERATE=0.0009;THETA=0.0003;AC=574;AN=2184 GT:DS:GL:BD 0.26282051 0 1 69642066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3225;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0007;THETA=0.0003;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 69642136 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6958;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69642197 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0786;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69642268 rs59338763 A AG 10456 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0790;AVGPOST=0.9980;RSQ=0.9909;ERATE=0.0007;THETA=0.0002;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69642325 . AC A 1215 PASS INDEL;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0098;AVGPOST=0.9964;RSQ=0.8628;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69642413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2624;AVGPOST=0.9985;RSQ=0.9968;ERATE=0.0006;THETA=0.0003;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 69642486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0034;AVGPOST=0.9981;RSQ=0.7477;ERATE=0.0020;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69642528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0265;AVGPOST=0.9975;RSQ=0.9643;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69642712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2628;AVGPOST=0.9982;RSQ=0.9960;ERATE=0.0005;THETA=0.0002;AC=573;AN=2184 GT:DS:GL:BD 0.26236263 0 1 69642723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.951;LDAF=0.0367;AVGPOST=0.9959;RSQ=0.9570;ERATE=0.0003;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 69642903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0346;AVGPOST=0.9988;RSQ=0.9874;ERATE=0.0004;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 69642947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69643296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0005;AVGPOST=0.9993;RSQ=0.4209;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69643361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7874;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69643391 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0050;AVGPOST=0.9955;RSQ=0.6213;ERATE=0.0010;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69643546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9800;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69643549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.902;LDAF=0.0231;AVGPOST=0.9947;RSQ=0.9101;ERATE=0.0005;THETA=0.0038;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69643832 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.918;LDAF=0.0303;AVGPOST=0.9941;RSQ=0.9246;ERATE=0.0004;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69643861 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1713;AVGPOST=0.9983;RSQ=0.9952;ERATE=0.0004;THETA=0.0004;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 69643995 . A AT 318 PASS INDEL;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5393;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69644067 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5663;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69644106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8270;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69644150 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.752;LDAF=0.1893;AVGPOST=0.9109;RSQ=0.7598;ERATE=0.0249;THETA=0.0002;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 69644204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6279;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69644270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0781;AVGPOST=0.9971;RSQ=0.9884;ERATE=0.0005;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 69644286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5833;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0006;THETA=0.0003;AC=1274;AN=2184 GT:DS:GL:BD 0.58333331 1 1 69644300 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7748;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69644305 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0021;AVGPOST=0.9973;RSQ=0.5175;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69644354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7314;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69644390 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9702;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69644442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2311;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0003;THETA=0.0002;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 69644483 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2319;AVGPOST=0.9988;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 69644491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9634;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69644638 . GCAC G 990 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0116;AVGPOST=0.9995;RSQ=0.9795;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69644710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7416;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69644738 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6582;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69644843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7716;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69644895 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0090;AVGPOST=0.9987;RSQ=0.9401;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69644899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69645047 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0091;AVGPOST=0.9963;RSQ=0.8434;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69645075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0083;AVGPOST=0.9956;RSQ=0.7853;ERATE=0.0007;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69645082 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0098;AVGPOST=0.9973;RSQ=0.8836;ERATE=0.0005;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69645125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.3194;AVGPOST=0.9967;RSQ=0.9943;ERATE=0.0011;THETA=0.0003;AC=697;AN=2184 GT:DS:GL:BD 0.31913918 0 1 69645179 . CG C 141 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6149;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69645186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.7555;AVGPOST=0.9964;RSQ=0.9927;ERATE=0.0007;THETA=0.0002;AC=1653;AN=2184 GT:DS:GL:BD 0.75686812 1 1 69645203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.903;LDAF=0.0827;AVGPOST=0.9898;RSQ=0.9552;ERATE=0.0008;THETA=0.0003;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69645326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.905;LDAF=0.5650;AVGPOST=0.9516;RSQ=0.9280;ERATE=0.0044;THETA=0.0003;AC=1251;AN=2184 GT:DS:GL:BD 0.57280219 1 1 69645333 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6488;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69645494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69645644 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9700;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69645803 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6718;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69645865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6612;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69645909 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69645954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69646010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.912;LDAF=0.0206;AVGPOST=0.9936;RSQ=0.8852;ERATE=0.0005;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69646029 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69646034 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9574;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69646098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0051;AVGPOST=0.9981;RSQ=0.8607;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69646108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5769;AVGPOST=0.9926;RSQ=0.9886;ERATE=0.0014;THETA=0.0005;AC=1258;AN=2184 GT:DS:GL:BD 0.57600731 1 1 69646232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.9354;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69646328 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9259;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69646352 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69646441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8608;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69646482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9590;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69646591 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69646608 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69646624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8948;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69646639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0333;AVGPOST=0.9991;RSQ=0.9893;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 69646675 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69646702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9637;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69646827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69646891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7393;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69646985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9405;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69647053 . TATAAG T 673 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9684;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69647178 . ATTG A 424 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8920;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69647189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9644;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69647220 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5513;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69647235 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1455;AVGPOST=0.9972;RSQ=0.9932;ERATE=0.0003;THETA=0.0009;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 69647315 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69647439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9449;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69647440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69647495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7757;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69647507 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69647579 . AC A 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5878;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69647828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69647965 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0023;AVGPOST=0.9973;RSQ=0.5921;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69648037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8841;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69648101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.946;LDAF=0.0784;AVGPOST=0.9925;RSQ=0.9594;ERATE=0.0009;THETA=0.0006;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 69648104 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5149;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69648120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5224;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69648285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7463;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69648369 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69648470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8873;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69648584 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69648603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7410;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69648863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69648995 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6416;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69649019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69649141 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9677;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69649165 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69649187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0190;AVGPOST=0.9963;RSQ=0.9353;ERATE=0.0003;THETA=0.0010;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 69649312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69649361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6796;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69649442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7739;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69649546 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9585;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69649684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.925;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9397;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69649693 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4933;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69649877 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0036;AVGPOST=0.9991;RSQ=0.8875;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69649959 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.584;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4247;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69649960 . AT A 70 PASS INDEL;BAVGPOST=0.997;BRSQ=0.571;LDAF=0.0043;AVGPOST=0.9941;RSQ=0.5280;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69649960 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69650110 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5092;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69650130 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1808;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0003;THETA=0.0011;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 69650327 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69650373 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.814;LDAF=0.0106;AVGPOST=0.9932;RSQ=0.7418;ERATE=0.0004;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69650412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0032;AVGPOST=0.9977;RSQ=0.6970;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69650426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5573;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69650509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.658;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.6297;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69650526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.746;LDAF=0.0107;AVGPOST=0.9931;RSQ=0.7565;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69650694 . A AT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6118;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69650833 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7237;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69650834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1810;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0005;THETA=0.0003;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 69650880 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69650922 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69650995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8320;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69651000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8983;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69651025 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1297;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0004;THETA=0.0009;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 69651074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69651075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4196;AVGPOST=0.9960;RSQ=0.9937;ERATE=0.0005;THETA=0.0030;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 69651148 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0047;AVGPOST=0.9990;RSQ=0.9142;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69651262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69651297 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1812;AVGPOST=0.9985;RSQ=0.9965;ERATE=0.0004;THETA=0.0004;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 69651336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7999;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69651351 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0023;AVGPOST=0.9997;RSQ=0.9521;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69651355 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1807;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 69651385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1814;AVGPOST=0.9981;RSQ=0.9955;ERATE=0.0005;THETA=0.0003;AC=394;AN=2184 GT:DS:GL:BD 0.18040293 0 1 69651489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69651492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0142;AVGPOST=0.9970;RSQ=0.9302;ERATE=0.0004;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69651644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69651830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0283;AVGPOST=0.9990;RSQ=0.9863;ERATE=0.0003;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69651849 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6281;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69651958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0104;AVGPOST=0.9977;RSQ=0.9176;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69652019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9989;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 69652248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69652474 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0204;AVGPOST=0.9994;RSQ=0.9872;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69652624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69652630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0261;AVGPOST=0.9993;RSQ=0.9886;ERATE=0.0004;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 69652760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69652789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69652825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1322;AVGPOST=0.9987;RSQ=0.9960;ERATE=0.0004;THETA=0.0012;AC=288;AN=2184 GT:DS:GL:BD 0.13186814 0 1 69652844 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6169;ERATE=0.0004;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69652881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8048;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69652990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0049;AVGPOST=0.9984;RSQ=0.8906;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69653180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69653329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1666;AVGPOST=0.9970;RSQ=0.9932;ERATE=0.0004;THETA=0.0004;AC=363;AN=2184 GT:DS:GL:BD 0.16620879 0 1 69653452 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69653522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69653559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69653788 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0280;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69653835 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69653881 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69653897 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9379;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69653918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9338;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69654107 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69654108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8370;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69654122 . TC T 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6280;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69654140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0039;AVGPOST=0.9992;RSQ=0.9299;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69654184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69654206 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69654207 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69654288 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0063;AVGPOST=0.9987;RSQ=0.9233;ERATE=0.0003;THETA=0.0011;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69654378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69654410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1654;AVGPOST=0.9984;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 69654458 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8850;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69654500 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7424;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69654553 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0115;AVGPOST=0.9992;RSQ=0.9714;ERATE=0.0005;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69654602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8475;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69654612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69654988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69655028 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8309;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69655045 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69655060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6406;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69655087 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9993;RSQ=0.9584;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69655137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.900;LDAF=0.0173;AVGPOST=0.9977;RSQ=0.9511;ERATE=0.0003;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69655189 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0289;AVGPOST=0.9983;RSQ=0.9755;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69655222 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69655231 . GA G 68 PASS INDEL;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4429;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69655244 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6292;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69655305 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2368;AVGPOST=0.9988;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 69655401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.7108;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69655428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0044;AVGPOST=0.9981;RSQ=0.8409;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69655478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0038;AVGPOST=0.9980;RSQ=0.8063;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69655491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.710;LDAF=0.0048;AVGPOST=0.9949;RSQ=0.6523;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69655817 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.943;LDAF=0.0445;AVGPOST=0.9954;RSQ=0.9597;ERATE=0.0003;THETA=0.0003;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 69656002 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.540;LDAF=0.0026;AVGPOST=0.9976;RSQ=0.7050;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69656155 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8654;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69656183 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7533;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69656655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.7697;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69656805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0015;AVGPOST=0.9992;RSQ=0.7792;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69657011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9736;ERATE=0.0004;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69657047 . AATCC A 2839 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9989;RSQ=0.9657;ERATE=0.0004;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69657057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0022;AVGPOST=0.9968;RSQ=0.4601;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69657084 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.530;LDAF=0.0051;AVGPOST=0.9962;RSQ=0.7232;ERATE=0.0008;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69657144 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69657249 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9262;ERATE=0.0002;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69657286 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6637;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69657468 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.6860;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=1499;AN=2184 GT:DS:GL:BD 0.68635529 1 1 69657613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7002;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69657865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8838;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69658027 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6475;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69658239 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0031;AVGPOST=0.9947;RSQ=0.4177;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69658240 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0079;AVGPOST=0.9991;RSQ=0.9513;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69658512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.952;LDAF=0.0134;AVGPOST=0.9994;RSQ=0.9851;ERATE=0.0002;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69658513 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6633;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69658548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0187;AVGPOST=0.9990;RSQ=0.9775;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69658550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0126;AVGPOST=0.9995;RSQ=0.9841;ERATE=0.0002;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69658617 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69658642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0491;AVGPOST=0.9994;RSQ=0.9950;ERATE=0.0003;THETA=0.0005;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 69658644 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69658719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8660;ERATE=0.0004;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69658744 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4334;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69658771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69658964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69659054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1418;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 69659059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6701;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69659078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9990;RSQ=0.9397;ERATE=0.0005;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69659123 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.630;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.9035;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69659233 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8985;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69659265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0088;AVGPOST=0.9994;RSQ=0.9692;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69659328 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.905;LDAF=0.6621;AVGPOST=0.9127;RSQ=0.8715;ERATE=0.0218;THETA=0.0003;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 69659383 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0144;AVGPOST=0.9983;RSQ=0.9501;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69659487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69659636 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5581;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69659643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.7006;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69659645 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.4754;ERATE=0.0005;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69659854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.2277;AVGPOST=0.9976;RSQ=0.9947;ERATE=0.0004;THETA=0.0002;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 69659956 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8632;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69660085 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5934;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69660224 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7560;ERATE=0.0003;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69660278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69660290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0827;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 69660305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6890;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69660354 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8856;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69660371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0001;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69660578 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.861;LDAF=0.0093;AVGPOST=0.9965;RSQ=0.8516;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69660767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.969;LDAF=0.6465;AVGPOST=0.9926;RSQ=0.9883;ERATE=0.0009;THETA=0.0005;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 69660780 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0837;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69660801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0027;AVGPOST=0.9975;RSQ=0.6347;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69660820 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69660824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8399;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69660841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69660847 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9034;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69660876 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0836;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69660965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0836;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69661008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5005;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69661033 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0192;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69661046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0411;AVGPOST=0.9983;RSQ=0.9814;ERATE=0.0003;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69661059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1724;AVGPOST=0.9984;RSQ=0.9958;ERATE=0.0003;THETA=0.0001;AC=376;AN=2184 GT:DS:GL:BD 0.17216118 0 1 69661060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0836;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69661146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0837;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0002;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69661158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8114;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69661159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5502;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69661183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1170;AVGPOST=0.9996;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 69661194 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.940;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9862;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69661199 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3032;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 69661210 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69661268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0842;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69661297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5554;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69661300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8746;ERATE=0.0008;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69661441 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9660;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69661545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69661606 . C CT 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8399;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69661684 . T TC 534 PASS INDEL;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8173;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69661685 rs79626614 CT C 11358 PASS INDEL;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.1857;AVGPOST=0.9919;RSQ=0.9805;ERATE=0.0012;THETA=0.0002;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 69661686 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0843;AVGPOST=0.9994;RSQ=0.9961;ERATE=0.0004;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69661940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0871;AVGPOST=0.9979;RSQ=0.9895;ERATE=0.0003;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 69662013 rs79120942 TG T 18400 PASS INDEL;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.1911;AVGPOST=0.9960;RSQ=0.9904;ERATE=0.0006;THETA=0.0002;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 69662071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69662078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0835;AVGPOST=0.9992;RSQ=0.9951;ERATE=0.0004;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 69662155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0848;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0004;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69662190 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0117;AVGPOST=0.9971;RSQ=0.9022;ERATE=0.0003;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69662304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0839;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69662314 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.977;LDAF=0.0841;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69662319 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69662428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.0842;AVGPOST=0.9997;RSQ=0.9981;ERATE=0.0003;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69662590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0848;AVGPOST=0.9990;RSQ=0.9950;ERATE=0.0003;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 69662608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6133;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69662610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69662931 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69662951 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0202;AVGPOST=0.9987;RSQ=0.9724;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69663001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0840;AVGPOST=0.9996;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69663008 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9970;RSQ=0.8005;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69663041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0840;AVGPOST=0.9993;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69663043 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0840;AVGPOST=0.9994;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69663061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69663290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0842;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0004;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69663333 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69663641 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6451;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69663648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9731;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69663655 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9966;ERATE=0.0003;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69663776 . A AT 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69663809 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0841;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69663841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0082;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69663863 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0197;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69663907 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69663962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0054;AVGPOST=0.9992;RSQ=0.9264;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69663985 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1837;AVGPOST=0.9983;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 69664003 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0890;AVGPOST=0.9985;RSQ=0.9928;ERATE=0.0003;THETA=0.0008;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 69664010 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9341;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69664089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0846;AVGPOST=0.9989;RSQ=0.9953;ERATE=0.0003;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 69664104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0841;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69664215 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0085;AVGPOST=0.9978;RSQ=0.8931;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69664242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0843;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69664243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0064;AVGPOST=0.9997;RSQ=0.9799;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69664303 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69664309 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7494;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69664357 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9611;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69664377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69664517 . C CA 8439 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0851;AVGPOST=0.9980;RSQ=0.9893;ERATE=0.0005;THETA=0.0005;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 69664520 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0039;AVGPOST=0.9980;RSQ=0.8002;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69664555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0843;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69664573 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8679;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69664659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.703;LDAF=0.0042;AVGPOST=0.9969;RSQ=0.7413;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69664778 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.705;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.7912;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69664926 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9703;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69664945 . T TG 166 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6444;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69664945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.963;LDAF=0.0842;AVGPOST=0.9984;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69664962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0843;AVGPOST=0.9993;RSQ=0.9961;ERATE=0.0003;THETA=0.0002;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69665014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69665063 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6571;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69665098 . T TTG 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3606;ERATE=0.0008;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69665104 . CTTTTAG C 200 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8540;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69665123 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4692;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69665163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.768;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7426;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69665173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69665204 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0039;AVGPOST=0.9974;RSQ=0.7391;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69665215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.953;LDAF=0.0838;AVGPOST=0.9992;RSQ=0.9954;ERATE=0.0003;THETA=0.0005;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69665216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.987;LDAF=0.1285;AVGPOST=0.9919;RSQ=0.9762;ERATE=0.0009;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 69665241 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0842;AVGPOST=0.9994;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69665259 . CAATGTGAA C 1203 PASS INDEL;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0074;AVGPOST=0.9952;RSQ=0.7401;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69665377 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.6890;ERATE=0.0008;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69665411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0587;AVGPOST=0.9984;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 69665417 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=0.9991;RSQ=0.2949;ERATE=0.0004;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69665419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5520;ERATE=0.0005;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69665521 . CAT C 1895 PASS INDEL;BAVGPOST=0.993;BRSQ=0.889;LDAF=0.0309;AVGPOST=0.9973;RSQ=0.9690;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69665545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6059;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69665578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69665609 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4064;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69665699 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0358;AVGPOST=0.9995;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 69665789 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69665878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.865;LDAF=0.0074;AVGPOST=0.9966;RSQ=0.8200;ERATE=0.0003;THETA=0.0017;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69665898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.9231;AVGPOST=0.9985;RSQ=0.9909;ERATE=0.0004;THETA=0.0015;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 69666014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.5981;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69666195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8018;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69666241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69666307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4024;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69666513 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0275;AVGPOST=0.9945;RSQ=0.9203;ERATE=0.0004;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69666583 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69666874 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8194;ERATE=0.0007;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69666995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6314;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69667075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.725;LDAF=0.0052;AVGPOST=0.9973;RSQ=0.7975;ERATE=0.0006;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69667139 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6707;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69667246 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.4061;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69667285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0042;AVGPOST=0.9956;RSQ=0.5961;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69667302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0031;AVGPOST=0.9958;RSQ=0.4423;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69667325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0069;AVGPOST=0.9936;RSQ=0.6307;ERATE=0.0005;THETA=0.0039;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69667326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0910;AVGPOST=0.9887;RSQ=0.9561;ERATE=0.0005;THETA=0.0015;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 69667342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.777;LDAF=0.0136;AVGPOST=0.9920;RSQ=0.7828;ERATE=0.0009;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69667352 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0121;AVGPOST=0.9983;RSQ=0.9460;ERATE=0.0004;THETA=0.0016;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69667533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5351;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69667585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0051;AVGPOST=0.9996;RSQ=0.9657;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69667607 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4769;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69667939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9230;AVGPOST=0.9986;RSQ=0.9914;ERATE=0.0003;THETA=0.0009;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 69667964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6968;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69668005 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69668056 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7085;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69668354 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6343;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69668394 MERGED_DEL_2_4352 T ADELA . . SV;BAVGPOST=0.998;BRSQ=0.708;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.7034;ERATE=0.0016;THETA=0.0009;CIEND=-60;93;CIPOS=-65;92;END=93193110;SOURCE=BreakDancer_93187914_93193121;GenomeStrip_93187886_ GT:DS:GL:BD 0.00183150 0 1 69668426 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.759;LDAF=0.8723;AVGPOST=0.9312;RSQ=0.7613;ERATE=0.0092;THETA=0.0012;AC=1943;AN=2184 GT:DS:GL:BD 0.88965201 1 1 69668493 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5306;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69668507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.782;LDAF=0.0101;AVGPOST=0.9935;RSQ=0.7306;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69668665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.611;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5676;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69668667 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4452;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69668760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.553;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5994;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69668785 . AC A 84 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6533;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69668918 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69669053 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7431;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69669100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7689;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69669190 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.589;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5013;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69669306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4776;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69669372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6151;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69669379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69669494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0003;THETA=0.0007;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69669653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0259;AVGPOST=0.9994;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69669671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6407;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69669681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7178;ERATE=0.0006;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69669726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.668;LDAF=0.0409;AVGPOST=0.9673;RSQ=0.6940;ERATE=0.0036;THETA=0.0008;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 69669795 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.938;LDAF=0.9164;AVGPOST=0.9877;RSQ=0.9426;ERATE=0.0015;THETA=0.0028;AC=2007;AN=2184 GT:DS:GL:BD 0.91895604 1 1 69669838 . T TA 168 PASS INDEL;BAVGPOST=0.999;BRSQ=0.700;LDAF=0.0029;AVGPOST=0.9969;RSQ=0.5952;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69669995 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69670137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0262;AVGPOST=0.9988;RSQ=0.9820;ERATE=0.0005;THETA=0.0009;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69670345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69670407 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9985;RSQ=0.8826;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69670430 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69670531 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7804;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69670559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1928;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69670610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0006;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69670656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69670800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.913;LDAF=0.0131;AVGPOST=0.9984;RSQ=0.9533;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69670886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1930;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0006;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69670945 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1384;AVGPOST=0.9994;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 69671008 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6371;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69671060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1932;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69671095 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69671132 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1753;AVGPOST=0.9980;RSQ=0.9955;ERATE=0.0008;THETA=0.0004;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 69671213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69671293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0065;AVGPOST=0.9996;RSQ=0.9731;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69671318 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1929;AVGPOST=0.9990;RSQ=0.9977;ERATE=0.0004;THETA=0.0007;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69671404 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1930;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69671486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1931;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69671612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1931;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 69671682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1936;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0005;THETA=0.0005;AC=422;AN=2184 GT:DS:GL:BD 0.19322345 0 1 69671708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9878;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69671740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69671775 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4752;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69671820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1935;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 69671849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1931;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69671988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8104;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69671996 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6439;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69672059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69672144 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1929;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0007;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69672154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1929;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0005;THETA=0.0003;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69672189 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69672233 . TTC T 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4310;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69672249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9656;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69672432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1940;AVGPOST=0.9984;RSQ=0.9970;ERATE=0.0005;THETA=0.0003;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 69672434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1930;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0003;THETA=0.0003;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69672442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69672478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.901;LDAF=0.0158;AVGPOST=0.9983;RSQ=0.9534;ERATE=0.0003;THETA=0.0006;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69672500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6023;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69672551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3264;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0007;AC=713;AN=2184 GT:DS:GL:BD 0.32646519 0 1 69672773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3522;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 69672796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69672932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69672977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69673144 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1936;AVGPOST=0.9990;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=423;AN=2184 GT:DS:GL:BD 0.19368131 0 1 69673248 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1924;AVGPOST=0.9983;RSQ=0.9961;ERATE=0.0005;THETA=0.0005;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 69673289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0669;AVGPOST=0.9991;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 69673457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69673482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6531;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69673587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4357;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69673606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3515;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0005;THETA=0.0005;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 69673681 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0081;AVGPOST=0.9987;RSQ=0.9318;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69673717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9992;RSQ=0.9090;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69673754 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69673989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69674011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1928;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69674051 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69674142 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9741;ERATE=0.0004;THETA=0.0009;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69674170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6415;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69674299 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69674436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1930;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69674455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0029;AVGPOST=0.9968;RSQ=0.6131;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69674607 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5174;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69674667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1475;AVGPOST=0.9982;RSQ=0.9945;ERATE=0.0005;THETA=0.0003;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 69674687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0932;AVGPOST=0.9963;RSQ=0.9839;ERATE=0.0007;THETA=0.0005;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 69674713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.704;LDAF=0.0228;AVGPOST=0.9794;RSQ=0.6453;ERATE=0.0014;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69674780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1932;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0008;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69675070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1936;AVGPOST=0.9981;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 69675205 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3632;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69675243 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69675276 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.867;LDAF=0.0107;AVGPOST=0.9981;RSQ=0.9276;ERATE=0.0004;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69675285 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6768;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0004;THETA=0.0029;AC=1480;AN=2184 GT:DS:GL:BD 0.67765570 1 1 69675372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.901;BRSQ=0.824;LDAF=0.5899;AVGPOST=0.8436;RSQ=0.7683;ERATE=0.0106;THETA=0.0108;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 69675443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0072;AVGPOST=0.9934;RSQ=0.6287;ERATE=0.0006;THETA=0.0073;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69675455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.799;LDAF=0.0093;AVGPOST=0.9950;RSQ=0.7507;ERATE=0.0007;THETA=0.0271;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69675470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0058;AVGPOST=0.9923;RSQ=0.4780;ERATE=0.0007;THETA=0.0042;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69675523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.752;LDAF=0.0134;AVGPOST=0.9938;RSQ=0.8154;ERATE=0.0006;THETA=0.0066;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69675529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6163;ERATE=0.0011;THETA=0.0364;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69675547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.892;LDAF=0.0172;AVGPOST=0.9927;RSQ=0.8405;ERATE=0.0004;THETA=0.0245;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69675551 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.930;LDAF=0.0587;AVGPOST=0.9781;RSQ=0.8565;ERATE=0.0007;THETA=0.0259;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 69675553 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3304;ERATE=0.0005;THETA=0.0195;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69675564 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.855;LDAF=0.0134;AVGPOST=0.9936;RSQ=0.8261;ERATE=0.0007;THETA=0.0050;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69675566 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.466;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4242;ERATE=0.0004;THETA=0.0160;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69675571 . ACT A 470 PASS INDEL;BAVGPOST=0.987;BRSQ=0.623;LDAF=0.0144;AVGPOST=0.9856;RSQ=0.5803;ERATE=0.0008;THETA=0.0150;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69675588 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9200;ERATE=0.0004;THETA=0.0151;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69675847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.889;LDAF=0.0585;AVGPOST=0.9862;RSQ=0.9059;ERATE=0.0008;THETA=0.0182;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 69675850 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0262;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69675868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.904;LDAF=0.0065;AVGPOST=0.9981;RSQ=0.8887;ERATE=0.0016;THETA=0.0452;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69676032 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8470;ERATE=0.0003;THETA=0.0447;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69676128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.879;LDAF=0.0064;AVGPOST=0.9980;RSQ=0.8898;ERATE=0.0011;THETA=0.0117;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69676204 . CT C 173 PASS INDEL;BAVGPOST=0.980;BRSQ=0.427;LDAF=0.0266;AVGPOST=0.9564;RSQ=0.2695;ERATE=0.0026;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69676232 . TC T 1364 PASS INDEL;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8847;ERATE=0.0005;THETA=0.0093;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69676234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.909;LDAF=0.0740;AVGPOST=0.9809;RSQ=0.8849;ERATE=0.0212;THETA=0.0312;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 69676256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.847;LDAF=0.9520;AVGPOST=0.9815;RSQ=0.8506;ERATE=0.0046;THETA=0.0255;AC=2091;AN=2184 GT:DS:GL:BD 0.95741761 1 1 69676365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0079;AVGPOST=0.9967;RSQ=0.8250;ERATE=0.0004;THETA=0.0078;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69676448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0049;AVGPOST=0.9975;RSQ=0.8125;ERATE=0.0003;THETA=0.0137;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69676603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6656;ERATE=0.0003;THETA=0.0220;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69676604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0100;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69676626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6057;ERATE=0.0004;THETA=0.0311;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69676657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69676673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8235;ERATE=0.0003;THETA=0.0334;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69676688 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.680;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6838;ERATE=0.0003;THETA=0.0278;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69676720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.874;LDAF=0.1922;AVGPOST=0.9471;RSQ=0.8799;ERATE=0.0080;THETA=0.0526;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 69676723 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.574;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5055;ERATE=0.0004;THETA=0.0162;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69676747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.961;LDAF=0.0974;AVGPOST=0.9868;RSQ=0.9533;ERATE=0.0006;THETA=0.0087;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 69676966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9159;ERATE=0.0004;THETA=0.0131;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69676984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.825;LDAF=0.0349;AVGPOST=0.9846;RSQ=0.8129;ERATE=0.0043;THETA=0.0099;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 69676990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5466;ERATE=0.0005;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69677004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.747;LDAF=0.0082;AVGPOST=0.9960;RSQ=0.8117;ERATE=0.0023;THETA=0.0026;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69677020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0282;AVGPOST=0.9968;RSQ=0.9539;ERATE=0.0005;THETA=0.0144;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 69677066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.0991;AVGPOST=0.9946;RSQ=0.9798;ERATE=0.0006;THETA=0.0074;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69677109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0219;AVGPOST=0.9967;RSQ=0.9383;ERATE=0.0003;THETA=0.0064;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69677119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.886;LDAF=0.4994;AVGPOST=0.9148;RSQ=0.8826;ERATE=0.0042;THETA=0.0072;AC=1085;AN=2184 GT:DS:GL:BD 0.49679488 0 1 69677223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.962;BRSQ=0.854;LDAF=0.8613;AVGPOST=0.9522;RSQ=0.8457;ERATE=0.0041;THETA=0.0114;AC=1905;AN=2184 GT:DS:GL:BD 0.87225276 1 1 69677233 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.966;LDAF=0.1015;AVGPOST=0.9898;RSQ=0.9602;ERATE=0.0006;THETA=0.0157;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 69677317 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9087;ERATE=0.0003;THETA=0.0103;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69677344 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.956;LDAF=0.8721;AVGPOST=0.9836;RSQ=0.9448;ERATE=0.0015;THETA=0.0058;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 69677500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69677752 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9995;RSQ=0.9798;ERATE=0.0003;THETA=0.0094;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69677760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.976;LDAF=0.1117;AVGPOST=0.9931;RSQ=0.9734;ERATE=0.0008;THETA=0.0037;AC=241;AN=2184 GT:DS:GL:BD 0.11034799 0 1 69677832 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9994;RSQ=0.9785;ERATE=0.0004;THETA=0.0056;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69677834 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8016;ERATE=0.0004;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69677842 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6019;ERATE=0.0003;THETA=0.0050;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69677867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.965;LDAF=0.2772;AVGPOST=0.9800;RSQ=0.9631;ERATE=0.0004;THETA=0.0009;AC=600;AN=2184 GT:DS:GL:BD 0.27472529 0 1 69677966 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.959;LDAF=0.0186;AVGPOST=0.9973;RSQ=0.9393;ERATE=0.0003;THETA=0.0013;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69678207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69678341 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7592;ERATE=0.0003;THETA=0.0116;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69678428 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0154;AVGPOST=0.9994;RSQ=0.9816;ERATE=0.0004;THETA=0.0029;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69678566 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69678616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9553;ERATE=0.0003;THETA=0.0009;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69678866 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.926;LDAF=0.0103;AVGPOST=0.9978;RSQ=0.9312;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69678956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.993;LDAF=0.4882;AVGPOST=0.9920;RSQ=0.9879;ERATE=0.0024;THETA=0.0004;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 69679157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69679271 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4651;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0006;THETA=0.0016;AC=1016;AN=2184 GT:DS:GL:BD 0.46520147 0 1 69679277 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9305;ERATE=0.0003;THETA=0.0001;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69679396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0158;AVGPOST=0.9991;RSQ=0.9737;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69679521 . AG A 2146 PASS INDEL;BAVGPOST=0.965;BRSQ=0.804;LDAF=0.0985;AVGPOST=0.9487;RSQ=0.7845;ERATE=0.0117;THETA=0.0005;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 69679653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.988;LDAF=0.4615;AVGPOST=0.9952;RSQ=0.9929;ERATE=0.0016;THETA=0.0005;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 69679655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0545;AVGPOST=0.9949;RSQ=0.9678;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 69679658 . A AG 5401 PASS INDEL;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0545;AVGPOST=0.9944;RSQ=0.9645;ERATE=0.0003;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 69679658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.936;LDAF=0.0087;AVGPOST=0.9989;RSQ=0.9447;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69679660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0158;AVGPOST=0.9996;RSQ=0.9895;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69679701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69679903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69679977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.4942;AVGPOST=0.9950;RSQ=0.9928;ERATE=0.0005;THETA=0.0005;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 69680082 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0646;AVGPOST=0.9995;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 69680175 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7640;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69680224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8938;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69680331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69680375 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69680526 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6038;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69680583 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9066;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69680589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.903;LDAF=0.0104;AVGPOST=0.9961;RSQ=0.8607;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69680760 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.967;LDAF=0.4548;AVGPOST=0.9716;RSQ=0.9602;ERATE=0.0086;THETA=0.0003;AC=1007;AN=2184 GT:DS:GL:BD 0.46108058 0 1 69680847 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69680903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69680921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.3088;AVGPOST=0.9970;RSQ=0.9954;ERATE=0.0004;THETA=0.0005;AC=675;AN=2184 GT:DS:GL:BD 0.30906594 0 1 69681129 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4671;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=1020;AN=2184 GT:DS:GL:BD 0.46703297 0 1 69681167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4489;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69681193 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6580;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69681251 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.724;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69681278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0065;AVGPOST=0.9993;RSQ=0.9504;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69681340 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0090;AVGPOST=0.9984;RSQ=0.9170;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69681365 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1566;AVGPOST=0.9992;RSQ=0.9975;ERATE=0.0003;THETA=0.0025;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 69681368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1474;AVGPOST=0.9973;RSQ=0.9906;ERATE=0.0004;THETA=0.0001;AC=322;AN=2184 GT:DS:GL:BD 0.14743590 0 1 69681492 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3114;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0004;THETA=0.0002;AC=681;AN=2184 GT:DS:GL:BD 0.31181318 0 1 69681541 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69681952 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69682083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0284;AVGPOST=0.9988;RSQ=0.9859;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69682122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6400;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69682123 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9732;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69682145 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8580;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69682146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5929;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69682156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6127;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69682223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7277;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69682348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69682460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9995;RSQ=0.9901;ERATE=0.0003;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69682743 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8781;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69682746 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.8175;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69682783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69682843 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7765;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69682895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6720;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69682898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0057;AVGPOST=0.9974;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69683152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0193;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0002;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69683206 . AG A 1168 PASS INDEL;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0125;AVGPOST=0.9968;RSQ=0.9071;ERATE=0.0004;THETA=0.0009;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69683488 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5309;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69683489 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0281;AVGPOST=0.9995;RSQ=0.9927;ERATE=0.0004;THETA=0.0001;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69683674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0405;AVGPOST=0.9985;RSQ=0.9869;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 69683753 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0274;AVGPOST=0.9989;RSQ=0.9851;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 69683897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6145;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69683956 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4956;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69684221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0272;AVGPOST=0.9996;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 69684360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9983;RSQ=0.2648;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69684364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5513;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69684384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4808;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69684436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5566;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69684487 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5039;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69684501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0062;AVGPOST=0.9986;RSQ=0.9174;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69684535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69684558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6681;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69684583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8236;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69684641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3105;AVGPOST=0.9986;RSQ=0.9971;ERATE=0.0006;THETA=0.0003;AC=679;AN=2184 GT:DS:GL:BD 0.31089744 0 1 69684668 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1732;AVGPOST=0.9963;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 69684694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4733;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69684985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.906;LDAF=0.0256;AVGPOST=0.9986;RSQ=0.9747;ERATE=0.0004;THETA=0.0004;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 69685064 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.964;LDAF=0.4595;AVGPOST=0.9727;RSQ=0.9612;ERATE=0.0059;THETA=0.0002;AC=1006;AN=2184 GT:DS:GL:BD 0.46062270 0 1 69685089 . A AAAAT 284 PASS INDEL;BAVGPOST=0.996;BRSQ=0.622;LDAF=0.0045;AVGPOST=0.9964;RSQ=0.6362;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69685135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0083;AVGPOST=0.9978;RSQ=0.8962;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69685338 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0233;AVGPOST=0.9991;RSQ=0.9832;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69685484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69685485 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7064;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69685513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0105;AVGPOST=0.9992;RSQ=0.9724;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69685615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5849;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69685641 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0137;AVGPOST=1.0000;RSQ=0.9984;ERATE=0.0002;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69685670 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9642;ERATE=0.0002;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69685744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69685770 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2321;AVGPOST=0.9974;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=508;AN=2184 GT:DS:GL:BD 0.23260073 0 1 69685773 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9118;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69685795 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69685800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8571;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69685858 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69685864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0056;AVGPOST=0.9995;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69685878 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0288;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0002;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69685941 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7439;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69686048 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0289;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69686159 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6722;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69686220 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69686230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7495;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686503 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5968;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69686525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5539;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69686559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686663 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0082;AVGPOST=0.9997;RSQ=0.9847;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69686767 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0091;AVGPOST=0.9986;RSQ=0.9422;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69686831 . A AG 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6107;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69686856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7513;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69686907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6993;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69686954 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9805;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69686997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0083;AVGPOST=0.9996;RSQ=0.9799;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69687123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2324;AVGPOST=0.9981;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=509;AN=2184 GT:DS:GL:BD 0.23305860 0 1 69687132 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0673;AVGPOST=0.9989;RSQ=0.9935;ERATE=0.0004;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 69687179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5453;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69687225 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6941;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69687283 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7820;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69687314 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69687353 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1132;ERATE=0.0002;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69687435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9816;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69687454 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69687673 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7596;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69687675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8390;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69687743 . A AGCT 380 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69687748 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7603;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69687858 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7634;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69687956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0924;AVGPOST=0.9996;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 69688014 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5402;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69688086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8300;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69688121 . TC T 9 PASS INDEL;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4590;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69688138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0002;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69688160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69688209 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0924;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 69688257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5977;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69688289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9443;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69688351 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69688489 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3266;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0003;THETA=0.0002;AC=714;AN=2184 GT:DS:GL:BD 0.32692307 0 1 69688511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7361;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69688519 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1072;AVGPOST=0.9990;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 69688601 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9803;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69688648 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0034;AVGPOST=0.9973;RSQ=0.7279;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69688649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0099;AVGPOST=0.9985;RSQ=0.9363;ERATE=0.0002;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69688676 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6636;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69688722 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.718;LDAF=0.0037;AVGPOST=0.9976;RSQ=0.7413;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69688926 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0046;AVGPOST=0.9985;RSQ=0.8645;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69688949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8646;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69689017 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9191;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69689107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69689113 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69689133 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69689215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9261;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69689387 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69689393 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5332;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69689432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0022;AVGPOST=0.9988;RSQ=0.7634;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69689454 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5638;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69689700 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69689936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690030 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0384;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0002;THETA=0.0037;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 69690045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9763;ERATE=0.0002;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69690252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0412;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 69690260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690333 . CTT C 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690385 . T TTTC 293 PASS INDEL;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6250;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69690403 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8436;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69690457 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8770;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69690458 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690499 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.807;LDAF=0.0082;AVGPOST=0.9972;RSQ=0.8619;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69690603 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4648;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0004;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69690750 . CAG C 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.722;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4107;ERATE=0.0005;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690757 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6249;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69690981 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0203;AVGPOST=0.9988;RSQ=0.9741;ERATE=0.0005;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69691142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9371;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69691183 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0053;AVGPOST=0.9987;RSQ=0.8907;ERATE=0.0005;THETA=0.0030;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69691273 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4174;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69691336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9986;RSQ=0.9033;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69691337 . TTAA T 85 PASS INDEL;BAVGPOST=0.999;BRSQ=0.637;LDAF=0.0031;AVGPOST=0.9953;RSQ=0.3555;ERATE=0.0009;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69691471 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6693;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69691551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0169;AVGPOST=0.9988;RSQ=0.9666;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69691621 . A AT 296 PASS INDEL;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0135;AVGPOST=0.9876;RSQ=0.6290;ERATE=0.0019;THETA=0.0010;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69691664 . T TG 67 PASS INDEL;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6706;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69691774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0200;AVGPOST=0.9993;RSQ=0.9835;ERATE=0.0005;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69691830 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0132;AVGPOST=0.9936;RSQ=0.8228;ERATE=0.0007;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69691860 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0093;AVGPOST=0.9975;RSQ=0.8912;ERATE=0.0006;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69691882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8293;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69691908 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.4454;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69691928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5063;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69691966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4184;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69692097 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.6108;ERATE=0.0005;THETA=0.0033;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69692374 . G GA 1122 PASS INDEL;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0441;AVGPOST=0.9732;RSQ=0.7724;ERATE=0.0042;THETA=0.0008;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 69692384 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8805;ERATE=0.0006;THETA=0.0016;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69692393 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0017;AVGPOST=0.9978;RSQ=0.4321;ERATE=0.0007;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69692394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0039;AVGPOST=0.9958;RSQ=0.5631;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69692420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0044;AVGPOST=0.9994;RSQ=0.9319;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69692517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.7839;ERATE=0.0004;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69692523 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9917;ERATE=0.0003;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69692531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0104;AVGPOST=0.9977;RSQ=0.9201;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69692611 . CA C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0015;AVGPOST=0.9976;RSQ=0.3049;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69692810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6698;ERATE=0.0011;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69692871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4261;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69692877 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0196;AVGPOST=0.9998;RSQ=0.9948;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69692891 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5731;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69692966 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0352;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0007;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 69693065 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4247;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69693076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7872;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69693079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.808;LDAF=0.0073;AVGPOST=0.9969;RSQ=0.8544;ERATE=0.0005;THETA=0.0014;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69693099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0295;AVGPOST=0.9983;RSQ=0.9781;ERATE=0.0003;THETA=0.0006;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69693103 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0254;AVGPOST=0.9984;RSQ=0.9736;ERATE=0.0005;THETA=0.0014;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69693134 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0199;AVGPOST=0.9993;RSQ=0.9851;ERATE=0.0003;THETA=0.0005;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69693188 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5118;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69693390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9984;RSQ=0.8869;ERATE=0.0004;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69693404 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.553;LDAF=0.0442;AVGPOST=0.9419;RSQ=0.4473;ERATE=0.0143;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69693411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8859;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69693478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6250;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69693480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0059;AVGPOST=0.9966;RSQ=0.7940;ERATE=0.0006;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69693627 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0087;AVGPOST=0.9963;RSQ=0.8268;ERATE=0.0004;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69693830 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7469;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69693893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69693949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0288;AVGPOST=0.9995;RSQ=0.9919;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69693967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9663;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69694209 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0007;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69694226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69694295 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6920;ERATE=0.0004;THETA=0.0022;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69694449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8266;AVGPOST=0.9968;RSQ=0.9907;ERATE=0.0008;THETA=0.0009;AC=1806;AN=2184 GT:DS:GL:BD 0.82692307 1 1 69694491 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8959;AVGPOST=0.9987;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=1957;AN=2184 GT:DS:GL:BD 0.89606225 1 1 69694513 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69694653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8656;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69694725 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0154;AVGPOST=0.9984;RSQ=0.9593;ERATE=0.0004;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 69694834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6091;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69694988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8253;AVGPOST=0.9979;RSQ=0.9947;ERATE=0.0003;THETA=0.0010;AC=1802;AN=2184 GT:DS:GL:BD 0.82509160 1 1 69695053 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5417;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69695066 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9014;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69695142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5371;ERATE=0.0009;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69695143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69695176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0565;AVGPOST=0.9950;RSQ=0.9655;ERATE=0.0005;THETA=0.0013;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 69695283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9900;ERATE=0.0003;THETA=0.0022;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69695390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4389;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69695543 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0259;AVGPOST=0.9992;RSQ=0.9863;ERATE=0.0003;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 69695682 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.844;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69695735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6602;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69695739 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69695912 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.562;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5584;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69695937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6943;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69695990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2259;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0006;THETA=0.0001;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 69696009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7565;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69696129 . C CA 24 PASS INDEL;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5326;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69696138 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2253;AVGPOST=0.9978;RSQ=0.9944;ERATE=0.0008;THETA=0.0005;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 69696220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69696360 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.884;LDAF=0.0099;AVGPOST=0.9958;RSQ=0.8282;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69696361 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.607;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69696368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69696374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.863;LDAF=0.0218;AVGPOST=0.9968;RSQ=0.9409;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69696419 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.584;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5659;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69696482 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6619;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69696579 . T TA 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7941;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69696635 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6715;AVGPOST=0.9985;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=1467;AN=2184 GT:DS:GL:BD 0.67170328 1 1 69696675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5898;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69696694 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.8004;AVGPOST=0.9970;RSQ=0.9918;ERATE=0.0005;THETA=0.0002;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 69696836 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4331;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0007;THETA=0.0003;AC=947;AN=2184 GT:DS:GL:BD 0.43360806 0 1 69696857 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5717;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.9981;AVGPOST=0.9976;RSQ=0.5165;ERATE=0.0006;THETA=0.0003;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 69697151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0075;AVGPOST=0.9987;RSQ=0.9348;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69697279 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5456;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69697289 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5569;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6583;AVGPOST=0.9975;RSQ=0.9950;ERATE=0.0006;THETA=0.0004;AC=1439;AN=2184 GT:DS:GL:BD 0.65888280 1 1 69697335 . AG A 315 PASS INDEL;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0043;AVGPOST=0.9963;RSQ=0.6358;ERATE=0.0009;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69697375 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697428 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2252;AVGPOST=0.9986;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 69697470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8072;AVGPOST=0.9984;RSQ=0.9952;ERATE=0.0005;THETA=0.0012;AC=1762;AN=2184 GT:DS:GL:BD 0.80677658 1 1 69697475 . CCTT C 806 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0060;AVGPOST=0.9993;RSQ=0.9509;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69697561 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8075;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0005;THETA=0.0002;AC=1763;AN=2184 GT:DS:GL:BD 0.80723441 1 1 69697587 . A AG 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697645 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6398;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69697662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.754;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8179;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69697683 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.764;LDAF=0.0069;AVGPOST=0.9977;RSQ=0.8579;ERATE=0.0008;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69697812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697823 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6941;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697827 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69697828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5375;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697869 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697882 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7377;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69697890 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5301;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0031;AVGPOST=0.9977;RSQ=0.6923;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69697901 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697904 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4764;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69697975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4348;AVGPOST=0.9895;RSQ=0.9840;ERATE=0.0027;THETA=0.0005;AC=949;AN=2184 GT:DS:GL:BD 0.43452382 0 1 69698043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4604;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69698050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.923;LDAF=0.0113;AVGPOST=0.9994;RSQ=0.9749;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69698111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69698188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0128;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0010;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69698201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69698207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9744;ERATE=0.0004;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69698330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69698409 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69698461 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0285;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0004;THETA=0.0002;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69698463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.666;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5276;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69698707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1366;AVGPOST=0.9987;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 69698734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0095;AVGPOST=0.9996;RSQ=0.9802;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69698736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1499;AVGPOST=0.9982;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 69698746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6064;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69698822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0098;AVGPOST=0.9994;RSQ=0.9718;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69698918 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0398;AVGPOST=0.9977;RSQ=0.9735;ERATE=0.0004;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69699036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.734;LDAF=0.0296;AVGPOST=0.9795;RSQ=0.7165;ERATE=0.0080;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69699041 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.4185;AVGPOST=0.9708;RSQ=0.9572;ERATE=0.0112;THETA=0.0003;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 69699045 rs35852977 A AT 382 PASS INDEL;BAVGPOST=0.816;BRSQ=0.186;LDAF=0.1038;AVGPOST=0.8778;RSQ=0.4836;ERATE=0.0048;THETA=0.0005;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 69699216 rs71575670 A ATC 879 PASS INDEL;BAVGPOST=0.808;BRSQ=0.209;LDAF=0.1377;AVGPOST=0.8388;RSQ=0.4789;ERATE=0.0072;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 69699218 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.621;LDAF=0.1221;AVGPOST=0.9639;RSQ=0.8766;ERATE=0.0016;THETA=0.0003;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 69699315 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.661;LDAF=0.1492;AVGPOST=0.8984;RSQ=0.6921;ERATE=0.0072;THETA=0.0005;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 69699378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.541;LDAF=0.0120;AVGPOST=0.9822;RSQ=0.4374;ERATE=0.0010;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69699397 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.5866;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69699425 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.324;LDAF=0.0173;AVGPOST=0.9786;RSQ=0.5213;ERATE=0.0016;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69699479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.551;LDAF=0.1532;AVGPOST=0.8430;RSQ=0.5452;ERATE=0.0101;THETA=0.0006;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69699520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.450;LDAF=0.0044;AVGPOST=0.9941;RSQ=0.4740;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69699784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.900;LDAF=0.1281;AVGPOST=0.9792;RSQ=0.9257;ERATE=0.0034;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 69699857 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0063;AVGPOST=0.9986;RSQ=0.9058;ERATE=0.0005;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69699957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7355;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69700126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0579;AVGPOST=0.9975;RSQ=0.9812;ERATE=0.0005;THETA=0.0003;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 69700181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0081;AVGPOST=0.9940;RSQ=0.7387;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69700187 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6856;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69700397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8684;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69700404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5372;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69700456 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6414;AVGPOST=0.9967;RSQ=0.9937;ERATE=0.0006;THETA=0.0004;AC=1400;AN=2184 GT:DS:GL:BD 0.64102566 1 1 69700457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6737;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69700515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0027;AVGPOST=0.9985;RSQ=0.7838;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69700648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8470;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69700787 . CCA C 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3993;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69700803 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9989;RSQ=0.9621;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69700829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69700846 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69700886 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0014;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69700945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0295;AVGPOST=0.9991;RSQ=0.9878;ERATE=0.0003;THETA=0.0010;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69701136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.699;LDAF=0.0105;AVGPOST=0.9939;RSQ=0.7908;ERATE=0.0005;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69701233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.909;LDAF=0.2024;AVGPOST=0.9833;RSQ=0.9662;ERATE=0.0004;THETA=0.0016;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 69701235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69701472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9113;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69701503 . A AT 498 PASS INDEL;BAVGPOST=0.992;BRSQ=0.710;LDAF=0.0271;AVGPOST=0.9727;RSQ=0.5978;ERATE=0.0061;THETA=0.0008;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69701503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9180;ERATE=0.0002;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69701543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69701597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7352;ERATE=0.0002;THETA=0.0040;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69701629 . T TC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0041;AVGPOST=0.9947;RSQ=0.5157;ERATE=0.0006;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69701669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0361;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0030;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 69701697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0002;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69701853 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69701909 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69701942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69701968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69701970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69701984 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8423;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69702040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69702052 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9927;ERATE=0.0002;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69702150 . TCC T 34788 PASS INDEL;BAVGPOST=0.916;BRSQ=0.501;LDAF=0.8656;AVGPOST=0.8556;RSQ=0.5303;ERATE=0.0328;THETA=0.0009;AC=1986;AN=2184 GT:DS:GL:BD 0.90934068 1 1 69702183 rs72154704 C CT 231 PASS INDEL;BAVGPOST=0.677;BRSQ=0.186;LDAF=0.3250;AVGPOST=0.6591;RSQ=0.3412;ERATE=0.0295;THETA=0.0010;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 69702185 . AT A 357 PASS INDEL;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7898;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69702360 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5543;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69702514 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0002;AVGPOST=0.9997;RSQ=0.3498;ERATE=0.0002;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69702702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0295;AVGPOST=0.9996;RSQ=0.9939;ERATE=0.0002;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69702736 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69702957 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9640;ERATE=0.0003;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69702986 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69703050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69703082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0009;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69703170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69703266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69703329 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4464;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69703456 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0068;AVGPOST=0.9993;RSQ=0.9636;ERATE=0.0003;THETA=0.0021;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69703519 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0435;AVGPOST=0.9991;RSQ=0.9922;ERATE=0.0003;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69703527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9461;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69703617 rs66615807 CAT C 2539 PASS INDEL;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0230;AVGPOST=0.9979;RSQ=0.9607;ERATE=0.0003;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69703797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5554;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69704008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69704035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69704060 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.785;LDAF=0.0165;AVGPOST=0.9930;RSQ=0.8437;ERATE=0.0010;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69704382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0929;AVGPOST=0.9986;RSQ=0.9945;ERATE=0.0002;THETA=0.0008;AC=203;AN=2184 GT:DS:GL:BD 0.09294872 0 1 69704431 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0104;AVGPOST=0.9985;RSQ=0.9486;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69704469 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0366;AVGPOST=0.9990;RSQ=0.9924;ERATE=0.0002;THETA=0.0012;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 69704520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0022;AVGPOST=0.9991;RSQ=0.8085;ERATE=0.0005;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69704611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0159;AVGPOST=0.9992;RSQ=0.9777;ERATE=0.0002;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69704708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0297;AVGPOST=0.9991;RSQ=0.9878;ERATE=0.0002;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69704797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0114;AVGPOST=0.9982;RSQ=0.9259;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69704802 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9524;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69704854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0132;AVGPOST=0.9991;RSQ=0.9777;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69705015 . CCAT C 6884 PASS INDEL;BAVGPOST=0.986;BRSQ=0.900;LDAF=0.0583;AVGPOST=0.9707;RSQ=0.8094;ERATE=0.0006;THETA=0.0008;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 69705045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6423;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69705070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0491;AVGPOST=0.9990;RSQ=0.9910;ERATE=0.0003;THETA=0.0051;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 69705088 . G GA 624 PASS INDEL;BAVGPOST=0.933;BRSQ=0.528;LDAF=0.1117;AVGPOST=0.8813;RSQ=0.5027;ERATE=0.0309;THETA=0.0012;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69705219 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.922;LDAF=0.0287;AVGPOST=0.9987;RSQ=0.9836;ERATE=0.0003;THETA=0.0014;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69705234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5696;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69705316 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2143;AVGPOST=0.9980;RSQ=0.9953;ERATE=0.0004;THETA=0.0010;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 69705334 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8197;ERATE=0.0004;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69705390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0378;AVGPOST=0.9982;RSQ=0.9836;ERATE=0.0003;THETA=0.0005;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 69705669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0252;AVGPOST=0.9986;RSQ=0.9801;ERATE=0.0002;THETA=0.0006;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69705844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2652;AVGPOST=0.9963;RSQ=0.9928;ERATE=0.0004;THETA=0.0006;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 69705930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.992;LDAF=0.6390;AVGPOST=0.9897;RSQ=0.9834;ERATE=0.0012;THETA=0.0006;AC=1399;AN=2184 GT:DS:GL:BD 0.64056778 1 1 69706076 MERGED_DEL_2_4469 G ADELA . . SV;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;CIEND=-75;78;CIPOS=-93;64;END=101688173;SOURCE=BreakDancer_101684447_101688169;GenomeStrip_101684 GT:DS:GL:BD 0.00091575 0 1 69706108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9484;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69706165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1242;AVGPOST=0.9967;RSQ=0.9885;ERATE=0.0008;THETA=0.0003;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 69706179 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0164;AVGPOST=0.9983;RSQ=0.9565;ERATE=0.0003;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69706256 . GTTTA G 308 PASS INDEL;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0079;AVGPOST=0.9921;RSQ=0.6115;ERATE=0.0034;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69706298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1108;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=242;AN=2184 GT:DS:GL:BD 0.11080586 0 1 69706379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8284;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69706403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1112;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0003;THETA=0.0007;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 69706597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69706704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69706758 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7656;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69706765 . AT A 38 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8177;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69706958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2450;AVGPOST=0.9972;RSQ=0.9937;ERATE=0.0003;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 69707089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.8005;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69707100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8989;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69707102 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.779;LDAF=0.0078;AVGPOST=0.9960;RSQ=0.7940;ERATE=0.0004;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69707248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1229;AVGPOST=0.9904;RSQ=0.9699;ERATE=0.0008;THETA=0.0003;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 69707301 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.1721;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69707364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9982;RSQ=0.8669;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69707380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9346;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69707405 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8967;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69707536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69707562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69707579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.666;LDAF=0.0026;AVGPOST=0.9987;RSQ=0.7893;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69707625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9982;RSQ=0.9165;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69707712 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5647;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69707747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0031;AVGPOST=0.9995;RSQ=0.9352;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69707753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69707824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0092;AVGPOST=0.9984;RSQ=0.9475;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69707830 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69707941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9082;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69707989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69708037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.970;LDAF=0.0438;AVGPOST=0.9975;RSQ=0.9764;ERATE=0.0004;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69708093 . T TG 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.6591;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69708130 . A AT 545 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0071;AVGPOST=0.9963;RSQ=0.8060;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69708131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7702;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69708139 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0102;AVGPOST=0.9995;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69708316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708334 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8860;ERATE=0.0009;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69708353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69708376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708426 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708641 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.5185;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708675 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69708763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9505;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69708817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6809;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69708895 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1120;AVGPOST=0.9998;RSQ=0.9990;ERATE=0.0003;THETA=0.0002;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 69708950 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0104;AVGPOST=0.9975;RSQ=0.9044;ERATE=0.0004;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69708952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.1120;AVGPOST=0.9995;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 69709142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1073;AVGPOST=0.9987;RSQ=0.9953;ERATE=0.0004;THETA=0.0003;AC=234;AN=2184 GT:DS:GL:BD 0.10714286 0 1 69709159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69709334 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3936;AVGPOST=0.9976;RSQ=0.9959;ERATE=0.0005;THETA=0.0003;AC=862;AN=2184 GT:DS:GL:BD 0.39468864 0 1 69709418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0069;AVGPOST=0.9995;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69709422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8937;ERATE=0.0007;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69709458 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1074;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0003;THETA=0.0006;AC=235;AN=2184 GT:DS:GL:BD 0.10760073 0 1 69709503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7105;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69709539 . C CT 82 PASS INDEL;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5797;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69709552 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0189;AVGPOST=0.9982;RSQ=0.9578;ERATE=0.0003;THETA=0.0006;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 69709574 . G GT 117 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0041;AVGPOST=0.9956;RSQ=0.6364;ERATE=0.0006;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69709697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.0859;AVGPOST=0.9965;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 69709740 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69709848 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7726;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69709854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.8088;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69709855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5852;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69709898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1120;AVGPOST=0.9992;RSQ=0.9968;ERATE=0.0004;THETA=0.0002;AC=245;AN=2184 GT:DS:GL:BD 0.11217949 0 1 69709918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6184;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69710009 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6418;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69710031 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5652;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69710043 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0043;AVGPOST=0.9974;RSQ=0.7914;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69710300 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4734;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710324 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6009;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710384 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710651 . ACTAT A 1808 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0106;AVGPOST=0.9988;RSQ=0.9551;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69710711 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6512;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69710764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6684;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710773 rs66964286 TTCTCTCTCTC T 561 PASS INDEL;BAVGPOST=0.711;BRSQ=0.080;LDAF=0.2120;AVGPOST=0.7216;RSQ=0.3190;ERATE=0.0163;THETA=0.0003;AC=254;AN=2184 GT:DS:GL:BD 0.11630037 0 1 69710889 . T TCC 859 PASS INDEL;BAVGPOST=0.942;BRSQ=0.621;LDAF=0.0827;AVGPOST=0.9438;RSQ=0.7515;ERATE=0.0019;THETA=0.0006;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 69710916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4576;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69710934 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69711009 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69711162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0615;AVGPOST=0.9992;RSQ=0.9939;ERATE=0.0003;THETA=0.0002;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 69711165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1233;AVGPOST=0.9992;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=270;AN=2184 GT:DS:GL:BD 0.12362637 0 1 69711221 . CT C 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0039;AVGPOST=0.9967;RSQ=0.7052;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69711223 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.3170;AVGPOST=0.9948;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 69711232 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.3162;AVGPOST=0.9947;RSQ=0.9903;ERATE=0.0003;THETA=0.0004;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 69711235 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0706;AVGPOST=0.9984;RSQ=0.9899;ERATE=0.0004;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69711238 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5908;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69711256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6630;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69711318 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7701;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69711390 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9907;AVGPOST=0.9997;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 69711410 . T TA 364 PASS INDEL;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0116;AVGPOST=0.9979;RSQ=0.9317;ERATE=0.0005;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69711467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3012;AVGPOST=0.9977;RSQ=0.9953;ERATE=0.0006;THETA=0.0004;AC=657;AN=2184 GT:DS:GL:BD 0.30082417 0 1 69711508 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69711521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9166;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69711567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.4923;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69711574 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69711620 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6383;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69711734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8555;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69711868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69711880 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9591;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69712002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0614;AVGPOST=0.9997;RSQ=0.9979;ERATE=0.0002;THETA=0.0004;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 69712099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0676;AVGPOST=0.9994;RSQ=0.9956;ERATE=0.0003;THETA=0.0007;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 69712120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9890;ERATE=0.0003;THETA=0.0040;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69712143 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5408;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=1181;AN=2184 GT:DS:GL:BD 0.54075092 1 1 69712170 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0985;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0002;THETA=0.0004;AC=214;AN=2184 GT:DS:GL:BD 0.09798535 0 1 69712280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9899;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0010;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 69712334 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0125;AVGPOST=0.9988;RSQ=0.9586;ERATE=0.0003;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69712363 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0155;AVGPOST=0.9995;RSQ=0.9860;ERATE=0.0003;THETA=0.0010;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69712372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0102;AVGPOST=0.9997;RSQ=0.9870;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69712375 rs79778358 CA C 7737 PASS INDEL;BAVGPOST=0.995;BRSQ=0.962;LDAF=0.0752;AVGPOST=0.9981;RSQ=0.9892;ERATE=0.0004;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 69712409 . AAG A 5898 PASS INDEL;BAVGPOST=0.994;BRSQ=0.961;LDAF=0.0752;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0002;THETA=0.0005;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 69712412 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.976;LDAF=0.0751;AVGPOST=0.9984;RSQ=0.9913;ERATE=0.0003;THETA=0.0007;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 69712415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6472;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69712424 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7843;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69712462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5391;AVGPOST=0.9977;RSQ=0.9963;ERATE=0.0005;THETA=0.0003;AC=1177;AN=2184 GT:DS:GL:BD 0.53891939 1 1 69712467 . AT A 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4155;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69712514 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.1382;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69712604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.9903;AVGPOST=0.9989;RSQ=0.9601;ERATE=0.0003;THETA=0.0002;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 69712714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69712955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6803;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69713054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69713055 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0694;AVGPOST=0.9974;RSQ=0.9848;ERATE=0.0003;THETA=0.0016;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 69713057 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2116;AVGPOST=0.9961;RSQ=0.9899;ERATE=0.0004;THETA=0.0003;AC=461;AN=2184 GT:DS:GL:BD 0.21108058 0 1 69713122 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.904;LDAF=0.0270;AVGPOST=0.9941;RSQ=0.9140;ERATE=0.0005;THETA=0.0007;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69713169 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.0868;AVGPOST=0.9946;RSQ=0.9757;ERATE=0.0004;THETA=0.0004;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 69713219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.817;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7595;ERATE=0.0005;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69713220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.402;LDAF=0.0172;AVGPOST=0.9755;RSQ=0.4488;ERATE=0.0025;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69713228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.699;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.7949;ERATE=0.0005;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69713252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8174;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69713257 . TC T 26 PASS INDEL;BAVGPOST=0.992;BRSQ=0.449;LDAF=0.0047;AVGPOST=0.9956;RSQ=0.5960;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69713259 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9101;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69713312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5488;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69713336 rs35252531 G GA 64375 PASS INDEL;BAVGPOST=0.963;BRSQ=0.913;LDAF=0.7806;AVGPOST=0.9576;RSQ=0.9167;ERATE=0.0034;THETA=0.0005;AC=1704;AN=2184 GT:DS:GL:BD 0.78021979 1 1 69713379 rs67287726 AC A 26131 PASS INDEL;BAVGPOST=0.991;BRSQ=0.982;LDAF=0.7655;AVGPOST=0.9870;RSQ=0.9739;ERATE=0.0008;THETA=0.0003;AC=1679;AN=2184 GT:DS:GL:BD 0.76877290 1 1 69713383 rs67287726 C CT 10403 PASS INDEL;BAVGPOST=0.908;BRSQ=0.815;LDAF=0.6728;AVGPOST=0.8527;RSQ=0.7581;ERATE=0.0310;THETA=0.0005;AC=1553;AN=2184 GT:DS:GL:BD 0.71108061 1 1 69713384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9342;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69713399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0708;AVGPOST=0.9982;RSQ=0.9886;ERATE=0.0004;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69713413 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4370;ERATE=0.0005;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69713478 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.592;LDAF=0.0047;AVGPOST=0.9940;RSQ=0.4686;ERATE=0.0010;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69713484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.5320;ERATE=0.0006;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69713490 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7727;AVGPOST=0.9971;RSQ=0.9935;ERATE=0.0007;THETA=0.0007;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 69713522 . C CA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.4997;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69713575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0708;AVGPOST=0.9985;RSQ=0.9913;ERATE=0.0004;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69713624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0753;AVGPOST=0.9977;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 69713625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0699;AVGPOST=0.9981;RSQ=0.9893;ERATE=0.0003;THETA=0.0003;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 69713642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.964;LDAF=0.0742;AVGPOST=0.9964;RSQ=0.9813;ERATE=0.0004;THETA=0.0024;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 69713701 . TA T 195 PASS INDEL;BAVGPOST=0.997;BRSQ=0.679;LDAF=0.0058;AVGPOST=0.9982;RSQ=0.8651;ERATE=0.0004;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69713735 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7721;AVGPOST=0.9964;RSQ=0.9926;ERATE=0.0006;THETA=0.0007;AC=1688;AN=2184 GT:DS:GL:BD 0.77289379 1 1 69713797 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7284;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69713812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5697;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69713835 . A AACAG 14598 PASS INDEL;BAVGPOST=0.985;BRSQ=0.891;LDAF=0.0699;AVGPOST=0.9979;RSQ=0.9874;ERATE=0.0004;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69713839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0124;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69713845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0041;AVGPOST=0.9935;RSQ=0.4829;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69713850 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0707;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69713868 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.599;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5080;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69713918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0707;AVGPOST=0.9994;RSQ=0.9966;ERATE=0.0002;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69714101 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0016;AVGPOST=0.9997;RSQ=0.8653;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69714134 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5568;ERATE=0.0002;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714139 rs71088194 A AC 98360 PASS INDEL;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.9876;AVGPOST=0.9959;RSQ=0.8597;ERATE=0.0005;THETA=0.0011;AC=2159;AN=2184 GT:DS:GL:BD 0.98855311 1 1 69714198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7662;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714223 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0051;AVGPOST=0.9961;RSQ=0.7119;ERATE=0.0008;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69714280 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0708;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0004;THETA=0.0008;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69714291 . CA C 28 PASS INDEL;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6215;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69714293 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.748;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.5875;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69714311 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0028;AVGPOST=0.9976;RSQ=0.6480;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69714324 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9600;ERATE=0.0003;THETA=0.0013;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69714463 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6522;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5330;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69714522 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0710;AVGPOST=0.9984;RSQ=0.9893;ERATE=0.0005;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69714546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7476;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69714560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0705;AVGPOST=0.9996;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69714579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5587;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714681 . C CT 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5159;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69714720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.967;LDAF=0.0371;AVGPOST=0.9991;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 69714759 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9835;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69714887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0086;AVGPOST=0.9993;RSQ=0.9637;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69714913 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0704;AVGPOST=0.9973;RSQ=0.9839;ERATE=0.0006;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69714923 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.965;LDAF=0.0703;AVGPOST=0.9992;RSQ=0.9948;ERATE=0.0003;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.965;LDAF=0.0705;AVGPOST=0.9991;RSQ=0.9945;ERATE=0.0002;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9991;RSQ=0.0808;ERATE=0.0004;THETA=0.0010;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69715140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8091;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69715239 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0028;AVGPOST=0.9995;RSQ=0.9266;ERATE=0.0002;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69715268 rs76091538 C CT 8688 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0708;AVGPOST=0.9988;RSQ=0.9926;ERATE=0.0004;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69715377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0703;AVGPOST=0.9994;RSQ=0.9958;ERATE=0.0003;THETA=0.0009;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0703;AVGPOST=0.9994;RSQ=0.9960;ERATE=0.0003;THETA=0.0002;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715463 rs67601631 AT A 6397 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0708;AVGPOST=0.9990;RSQ=0.9935;ERATE=0.0004;THETA=0.0008;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8857;ERATE=0.0006;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69715610 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0716;AVGPOST=0.9973;RSQ=0.9841;ERATE=0.0007;THETA=0.0005;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.9905;AVGPOST=0.9992;RSQ=0.9579;ERATE=0.0004;THETA=0.0009;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 69715775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69715779 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0713;AVGPOST=0.9976;RSQ=0.9869;ERATE=0.0004;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715792 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.930;LDAF=0.0199;AVGPOST=0.9963;RSQ=0.9338;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69715811 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9424;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69715835 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.945;LDAF=0.1128;AVGPOST=0.9832;RSQ=0.9369;ERATE=0.0004;THETA=0.0006;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 69715850 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0704;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69715865 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8494;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69715884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.944;LDAF=0.1404;AVGPOST=0.9797;RSQ=0.9378;ERATE=0.0004;THETA=0.0003;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 69715897 . G GA 54 PASS INDEL;BAVGPOST=0.800;BRSQ=0.007;LDAF=0.1611;AVGPOST=0.7517;RSQ=0.2610;ERATE=0.0092;THETA=0.0068;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 69793277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.835;LDAF=0.0056;AVGPOST=0.9969;RSQ=0.8185;ERATE=0.0003;THETA=0.0014;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69794632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5350;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69794864 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4313;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69794870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69794957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6725;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69795364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7689;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69795454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6452;ERATE=0.0004;THETA=0.0032;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69795455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.785;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7519;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69795473 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69795476 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6800;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69795520 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7079;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69795662 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7152;ERATE=0.0003;THETA=0.0021;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69795714 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7533;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69795798 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6242;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69796082 . TTCAATAGAATAC T 547 PASS INDEL;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6824;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69796401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4258;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69796451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4439;ERATE=0.0006;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69796674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0256;AVGPOST=0.9957;RSQ=0.9427;ERATE=0.0003;THETA=0.0014;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 69796707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69796750 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7677;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69796863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69796993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5246;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69797174 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0043;AVGPOST=0.9985;RSQ=0.8406;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69797194 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0064;AVGPOST=0.9972;RSQ=0.8517;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69797202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.6257;ERATE=0.0007;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69797280 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.828;LDAF=0.0074;AVGPOST=0.9960;RSQ=0.7917;ERATE=0.0004;THETA=0.0015;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69797358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.753;LDAF=0.0094;AVGPOST=0.9945;RSQ=0.7743;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69797571 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.682;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7498;ERATE=0.0005;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69797764 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7159;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69797869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0006;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69798061 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0386;AVGPOST=0.9919;RSQ=0.9185;ERATE=0.0005;THETA=0.0011;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 69798088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69798128 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0039;AVGPOST=0.9982;RSQ=0.8065;ERATE=0.0004;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69798251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0055;AVGPOST=0.9988;RSQ=0.9248;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69798583 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1335;AVGPOST=0.9974;RSQ=0.9917;ERATE=0.0004;THETA=0.0005;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 69798615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0243;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0010;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 69798689 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9828;ERATE=0.0004;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69798702 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69798792 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0194;AVGPOST=0.9986;RSQ=0.9749;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69798804 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69798850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69798894 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1190;AVGPOST=0.9970;RSQ=0.9880;ERATE=0.0004;THETA=0.0008;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 69798930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69799047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5347;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69799062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5736;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69799117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.881;LDAF=0.0109;AVGPOST=0.9957;RSQ=0.8420;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69799161 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0186;AVGPOST=0.9993;RSQ=0.9857;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69799182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0073;AVGPOST=0.9990;RSQ=0.9448;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69799256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1805;AVGPOST=0.9971;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 69799441 . C CTTGT 6438 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0185;AVGPOST=0.9993;RSQ=0.9831;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69799638 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.5920;AVGPOST=0.9977;RSQ=0.9960;ERATE=0.0005;THETA=0.0004;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 69799725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8385;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69799797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0136;AVGPOST=0.9983;RSQ=0.9542;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69799882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0135;AVGPOST=0.9984;RSQ=0.9554;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69799883 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6437;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69799950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69800063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9994;RSQ=0.1418;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69800073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1215;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0004;THETA=0.0002;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 69800098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5722;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69800181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0059;AVGPOST=0.9994;RSQ=0.9589;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69800182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69800191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6921;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69800249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8207;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69800301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0181;AVGPOST=0.9994;RSQ=0.9849;ERATE=0.0004;THETA=0.0002;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69800319 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0027;AVGPOST=0.9977;RSQ=0.6764;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69800342 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.773;LDAF=0.0456;AVGPOST=0.9795;RSQ=0.8332;ERATE=0.0004;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 69800345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.883;LDAF=0.0125;AVGPOST=0.9994;RSQ=0.9775;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69800352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.830;LDAF=0.0174;AVGPOST=0.9948;RSQ=0.8728;ERATE=0.0009;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69800390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.881;LDAF=0.0220;AVGPOST=0.9924;RSQ=0.8611;ERATE=0.0010;THETA=0.0003;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69800407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.962;LDAF=0.1562;AVGPOST=0.9816;RSQ=0.9521;ERATE=0.0034;THETA=0.0006;AC=331;AN=2184 GT:DS:GL:BD 0.15155677 0 1 69800488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69800533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.803;LDAF=0.0089;AVGPOST=0.9947;RSQ=0.7667;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69800734 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.2948;AVGPOST=0.9937;RSQ=0.9883;ERATE=0.0004;THETA=0.0003;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 69800876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69800879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1338;AVGPOST=0.9985;RSQ=0.9945;ERATE=0.0006;THETA=0.0002;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 69800909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69800944 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=0.9991;RSQ=0.9801;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69800973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0084;AVGPOST=0.9937;RSQ=0.7218;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69801015 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4451;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801022 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4791;AVGPOST=0.9975;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=1048;AN=2184 GT:DS:GL:BD 0.47985348 0 1 69801168 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6301;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69801228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0125;AVGPOST=0.9996;RSQ=0.9845;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69801256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.824;LDAF=0.0112;AVGPOST=0.9962;RSQ=0.8690;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69801267 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9249;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69801325 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.880;LDAF=0.0082;AVGPOST=0.9971;RSQ=0.8605;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69801387 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0238;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69801418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9221;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69801529 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8483;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69801540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.736;LDAF=0.0052;AVGPOST=0.9976;RSQ=0.8122;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69801594 . CAG C 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0031;AVGPOST=0.9966;RSQ=0.5278;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69801599 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0143;AVGPOST=0.9990;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69801623 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801709 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5935;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69801918 . T TG 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6295;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69801942 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4789;AVGPOST=0.9804;RSQ=0.9692;ERATE=0.0035;THETA=0.0004;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 69802054 rs35629875 C CT 382 PASS INDEL;BAVGPOST=0.676;BRSQ=0.260;LDAF=0.3447;AVGPOST=0.6545;RSQ=0.3402;ERATE=0.0231;THETA=0.0021;AC=594;AN=2184 GT:DS:GL:BD 0.27197802 0 1 69802092 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0285;AVGPOST=0.9943;RSQ=0.9239;ERATE=0.0008;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69802377 . ATTAG A 1895 PASS INDEL;BAVGPOST=0.993;BRSQ=0.807;LDAF=0.0148;AVGPOST=0.9914;RSQ=0.7677;ERATE=0.0006;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69802551 . CT C 647 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0047;AVGPOST=0.9987;RSQ=0.8955;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69802565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69802580 . TTTAA T 106 PASS INDEL;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0045;AVGPOST=0.9975;RSQ=0.7781;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69802719 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.653;LDAF=0.0030;AVGPOST=0.9968;RSQ=0.5715;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69802744 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9465;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69802776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69802783 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.861;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6145;ERATE=0.0011;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69802827 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0077;AVGPOST=0.9995;RSQ=0.9732;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69802846 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8089;ERATE=0.0005;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69802891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0041;AVGPOST=0.9978;RSQ=0.7525;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69802949 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8106;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69802950 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1336;AVGPOST=0.9993;RSQ=0.9973;ERATE=0.0004;THETA=0.0006;AC=291;AN=2184 GT:DS:GL:BD 0.13324176 0 1 69802999 . A ATAC 6026 PASS INDEL;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0266;AVGPOST=0.9984;RSQ=0.9779;ERATE=0.0004;THETA=0.0010;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69803001 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6116;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69803102 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803125 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69803230 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8145;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69803233 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803273 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6467;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803396 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5582;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69803515 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0207;AVGPOST=0.9997;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69803545 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9168;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69803624 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5670;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69803684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9470;ERATE=0.0004;THETA=0.0041;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69803861 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69803913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.882;LDAF=0.0223;AVGPOST=0.9950;RSQ=0.9090;ERATE=0.0005;THETA=0.0009;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69803950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8756;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69804008 . A ACG 21 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0061;AVGPOST=0.9941;RSQ=0.6339;ERATE=0.0011;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69804073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0091;AVGPOST=0.9977;RSQ=0.9196;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69804135 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=0.9981;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69804168 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0025;AVGPOST=0.9968;RSQ=0.5152;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69804196 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69804267 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69804580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7950;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69804665 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0297;AVGPOST=0.9958;RSQ=0.9427;ERATE=0.0005;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69804674 . CA C 694 PASS INDEL;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0083;AVGPOST=0.9957;RSQ=0.8001;ERATE=0.0003;THETA=0.0025;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69804678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8207;ERATE=0.0004;THETA=0.0014;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69804795 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9158;ERATE=0.0003;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69804797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69804854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.679;LDAF=0.0043;AVGPOST=0.9962;RSQ=0.6859;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69804868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5084;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69804933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1809;AVGPOST=0.9982;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=393;AN=2184 GT:DS:GL:BD 0.17994505 0 1 69805027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7627;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69805106 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6384;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69805175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.955;LDAF=0.0472;AVGPOST=0.9951;RSQ=0.9578;ERATE=0.0004;THETA=0.0015;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 69805181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7383;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69805183 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0027;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69805192 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0100;AVGPOST=0.9989;RSQ=0.9518;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69805196 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0161;AVGPOST=0.9995;RSQ=0.9868;ERATE=0.0003;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69805329 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0309;AVGPOST=0.9996;RSQ=0.9954;ERATE=0.0003;THETA=0.0006;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 69805379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=1.0000;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69805390 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69805580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69805606 . CATAA C 633 PASS INDEL;BAVGPOST=0.995;BRSQ=0.806;LDAF=0.0061;AVGPOST=0.9975;RSQ=0.8354;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69805724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69805802 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6711;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69805932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0226;AVGPOST=0.9995;RSQ=0.9913;ERATE=0.0003;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69805946 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8719;ERATE=0.0004;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69806061 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5130;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69806105 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8331;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69806117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0268;AVGPOST=0.9993;RSQ=0.9885;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69806118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9712;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69806197 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69806204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1833;AVGPOST=0.9958;RSQ=0.9894;ERATE=0.0006;THETA=0.0006;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 69806275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69806302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.9907;AVGPOST=0.9972;RSQ=0.8875;ERATE=0.0005;THETA=0.0008;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 69806324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5467;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69806506 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69806525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9444;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69806655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0048;AVGPOST=0.9981;RSQ=0.8255;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69806845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8626;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69806913 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8179;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69806931 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7396;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69806932 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0228;AVGPOST=0.9992;RSQ=0.9858;ERATE=0.0003;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69806980 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69806994 . CAT C 274 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0049;AVGPOST=0.9991;RSQ=0.9329;ERATE=0.0003;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69807088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69807137 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7140;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69807192 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0406;AVGPOST=0.9991;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69807259 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1824;AVGPOST=0.9982;RSQ=0.9949;ERATE=0.0005;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 69807293 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7912;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69807383 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7599;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69807430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6517;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69807438 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.8351;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69807452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8670;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69807487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0266;AVGPOST=0.9989;RSQ=0.9834;ERATE=0.0004;THETA=0.0006;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69807495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.789;LDAF=0.0046;AVGPOST=0.9980;RSQ=0.8057;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69807496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69807528 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0272;AVGPOST=0.9991;RSQ=0.9834;ERATE=0.0004;THETA=0.0006;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 69807626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5678;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69807713 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8305;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69807766 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9985;RSQ=0.9015;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69807868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6342;ERATE=0.0003;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69807984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9108;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69808005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8509;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69808052 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808190 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1204;AVGPOST=0.9963;RSQ=0.9868;ERATE=0.0004;THETA=0.0004;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 69808195 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6730;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808213 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0203;AVGPOST=0.9985;RSQ=0.9758;ERATE=0.0003;THETA=0.0004;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69808223 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808226 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69808294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69808297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69808379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8243;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69808403 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2337;AVGPOST=0.9955;RSQ=0.9895;ERATE=0.0005;THETA=0.0007;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 69808419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6077;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9156;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69808502 . G GA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808526 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0263;AVGPOST=0.9995;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69808573 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9864;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69808650 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9256;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69808654 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808664 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7989;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69808710 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8553;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69808844 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69808854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69808977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7759;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69809138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69809157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9305;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69809187 . AGG A 74 PASS INDEL;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7441;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69809233 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6644;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69809302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5033;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69809405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7836;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69809515 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9535;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69809540 . GA G 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6222;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69809543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6042;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69809653 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5980;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69809674 . CAA C 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.735;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6150;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69809685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6204;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69809731 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7673;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69809822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8690;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69809828 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0144;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0004;THETA=0.0012;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69810024 . GC G 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5576;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69810043 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69810125 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69810191 rs66468147 AC A 9373 PASS INDEL;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0737;AVGPOST=0.9969;RSQ=0.9818;ERATE=0.0005;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 69810246 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4011;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69810433 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8156;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69810467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69810574 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.7038;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69810630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8908;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69810652 . A AT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4829;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69810724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6738;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69810784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7205;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69810794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69810837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6606;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69810838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69810848 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3821;AVGPOST=0.9956;RSQ=0.9920;ERATE=0.0004;THETA=0.0003;AC=836;AN=2184 GT:DS:GL:BD 0.38278389 0 1 69810861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0268;AVGPOST=0.9988;RSQ=0.9823;ERATE=0.0003;THETA=0.0009;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69811155 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8362;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69811187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811212 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8657;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69811256 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1963;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 69811264 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811312 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69811418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9385;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69811448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1939;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 69811553 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8276;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69811579 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1997;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0005;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 69811583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69811672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69811676 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1528;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0003;THETA=0.0005;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 69811687 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4909;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8695;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69811794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811816 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1936;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 69811832 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1974;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0003;THETA=0.0003;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 69811905 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5567;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69811958 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9555;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69812091 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8757;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69812094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.8974;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69812152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69812194 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.822;LDAF=0.0055;AVGPOST=0.9986;RSQ=0.9106;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69812264 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0115;AVGPOST=0.9991;RSQ=0.9661;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69812283 . GA G 270 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69812304 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4683;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69812363 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5394;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69812434 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0042;AVGPOST=0.9972;RSQ=0.7363;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69812446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0085;AVGPOST=0.9980;RSQ=0.9124;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69812534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6712;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69812704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69812720 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9708;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69812723 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0191;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0003;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69812785 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0596;AVGPOST=0.9986;RSQ=0.9905;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 69812796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0594;AVGPOST=0.9990;RSQ=0.9935;ERATE=0.0003;THETA=0.0004;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 69812801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6620;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69812981 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7225;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69812987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6508;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69813108 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.891;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9345;ERATE=0.0004;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69813143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9633;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0005;AC=2104;AN=2184 GT:DS:GL:BD 0.96336997 1 1 69813165 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69813202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8711;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69813215 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2000;AVGPOST=0.9985;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=437;AN=2184 GT:DS:GL:BD 0.20009157 0 1 69813219 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9217;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69813226 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0055;AVGPOST=0.9977;RSQ=0.8362;ERATE=0.0006;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69813230 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9658;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69813278 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6293;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69813290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8440;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69813291 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9826;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69813320 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9941;AVGPOST=0.9993;RSQ=0.9517;ERATE=0.0004;THETA=0.0008;AC=2171;AN=2184 GT:DS:GL:BD 0.99404764 1 1 69813323 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7620;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69813550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0163;AVGPOST=0.9979;RSQ=0.9540;ERATE=0.0004;THETA=0.0011;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69813703 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7313;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69813704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0080;AVGPOST=0.9978;RSQ=0.8872;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69813724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1992;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 69813786 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5549;AVGPOST=0.9962;RSQ=0.9941;ERATE=0.0006;THETA=0.0003;AC=1211;AN=2184 GT:DS:GL:BD 0.55448717 1 1 69813815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6923;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69813850 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69813866 . AT A 256 PASS INDEL;BAVGPOST=0.998;BRSQ=0.641;LDAF=0.0036;AVGPOST=0.9958;RSQ=0.5729;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69813907 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69813911 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.934;LDAF=0.0175;AVGPOST=0.9958;RSQ=0.9187;ERATE=0.0003;THETA=0.0014;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 69813919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1992;AVGPOST=0.9995;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 69814013 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8685;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69814107 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6773;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69814132 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9995;RSQ=0.2597;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69814135 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5104;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69814206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.1934;AVGPOST=0.9839;RSQ=0.9675;ERATE=0.0032;THETA=0.0002;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 69814319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0076;AVGPOST=0.9987;RSQ=0.9206;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69814375 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8131;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69814436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0085;AVGPOST=0.9966;RSQ=0.8262;ERATE=0.0006;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69814514 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0085;AVGPOST=0.9973;RSQ=0.8647;ERATE=0.0006;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69814517 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8728;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69814524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0040;AVGPOST=0.9967;RSQ=0.6718;ERATE=0.0005;THETA=0.0029;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69814530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1622;AVGPOST=0.9967;RSQ=0.9905;ERATE=0.0004;THETA=0.0001;AC=354;AN=2184 GT:DS:GL:BD 0.16208792 0 1 69814541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1424;AVGPOST=0.9964;RSQ=0.9890;ERATE=0.0008;THETA=0.0003;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 69814566 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5905;AVGPOST=0.9975;RSQ=0.9959;ERATE=0.0005;THETA=0.0005;AC=1289;AN=2184 GT:DS:GL:BD 0.59020144 1 1 69814625 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5894;AVGPOST=0.9978;RSQ=0.9965;ERATE=0.0006;THETA=0.0004;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 69814847 . A AT 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5369;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69814989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7183;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69814999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69815004 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0127;AVGPOST=0.9993;RSQ=0.9762;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69815102 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8335;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69815108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2080;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0002;AC=455;AN=2184 GT:DS:GL:BD 0.20833333 0 1 69815140 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5972;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69815178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0304;AVGPOST=0.9979;RSQ=0.9779;ERATE=0.0003;THETA=0.0043;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69815352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.522;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69815364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5602;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69815547 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69815604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69815644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0073;AVGPOST=0.9987;RSQ=0.9321;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69815648 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7505;ERATE=0.0013;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69815666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3198;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=698;AN=2184 GT:DS:GL:BD 0.31959707 0 1 69815667 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4611;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69815773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1424;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69815782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1420;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69815850 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4924;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69815921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6335;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69815958 rs10632344 T TGTTGA 89633 PASS INDEL;BAVGPOST=0.954;BRSQ=0.934;LDAF=0.4360;AVGPOST=0.9595;RSQ=0.9505;ERATE=0.0099;THETA=0.0003;AC=970;AN=2184 GT:DS:GL:BD 0.44413918 0 1 69815969 . G GTTGAT 38186 PASS INDEL;BAVGPOST=0.952;BRSQ=0.922;LDAF=0.3902;AVGPOST=0.9227;RSQ=0.8952;ERATE=0.0410;THETA=0.0003;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 69815975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4358;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816157 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6847;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69816216 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1422;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69816238 . GA G 169 PASS INDEL;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8500;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69816252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1170;AVGPOST=0.9983;RSQ=0.9939;ERATE=0.0004;THETA=0.0003;AC=255;AN=2184 GT:DS:GL:BD 0.11675824 0 1 69816266 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69816314 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1434;AVGPOST=0.9976;RSQ=0.9930;ERATE=0.0004;THETA=0.0002;AC=313;AN=2184 GT:DS:GL:BD 0.14331502 0 1 69816420 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8581;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69816471 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7026;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69816569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1423;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0004;THETA=0.0009;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 69816590 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1423;AVGPOST=0.9993;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69816644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69816722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69816741 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0267;AVGPOST=0.9995;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69816786 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5617;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6259;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69816794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1427;AVGPOST=0.9988;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69816858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8958;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69816859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1422;AVGPOST=0.9996;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69816930 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1423;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0004;THETA=0.0001;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69816955 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69817134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7883;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69817146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9236;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69817228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.8451;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69817262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0031;AVGPOST=0.9967;RSQ=0.6116;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69817342 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0142;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69817347 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.2069;AVGPOST=0.9956;RSQ=0.9909;ERATE=0.0005;THETA=0.0003;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 69817349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69817364 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.3949;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69817477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9993;RSQ=0.9542;ERATE=0.0003;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69817540 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3180;AVGPOST=0.9954;RSQ=0.9923;ERATE=0.0005;THETA=0.0002;AC=695;AN=2184 GT:DS:GL:BD 0.31822345 0 1 69817661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9377;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69817710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0085;AVGPOST=0.9993;RSQ=0.9626;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69817780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7444;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69817801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6599;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69818037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8517;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69818042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7350;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69818067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69818098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6612;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69818100 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8118;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69818166 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69818193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1430;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0011;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 69818352 . GA G 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0045;AVGPOST=0.9949;RSQ=0.5630;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69818583 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1298;AVGPOST=0.9936;RSQ=0.9802;ERATE=0.0004;THETA=0.0005;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 69818636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.978;LDAF=0.1290;AVGPOST=0.9931;RSQ=0.9786;ERATE=0.0006;THETA=0.0002;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 69818637 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69818696 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4807;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69818851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5320;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69818953 . CAGTA C 256 PASS INDEL;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0038;AVGPOST=0.9962;RSQ=0.5942;ERATE=0.0007;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69819024 . TTA T 71 PASS INDEL;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5487;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69819053 . TACA T 140 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8347;ERATE=0.0006;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69819065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6981;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69819388 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0021;AVGPOST=0.9990;RSQ=0.8108;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69819495 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69819517 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69819524 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4427;AVGPOST=0.9972;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=968;AN=2184 GT:DS:GL:BD 0.44322345 0 1 69819579 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7359;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69819612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69819656 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69819681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0053;AVGPOST=0.9988;RSQ=0.9033;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69819785 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0439;AVGPOST=0.9992;RSQ=0.9916;ERATE=0.0004;THETA=0.0009;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69820000 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69820096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7572;ERATE=0.0009;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69820132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9983;RSQ=0.8785;ERATE=0.0006;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69820306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7248;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69820322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0449;AVGPOST=0.9990;RSQ=0.9900;ERATE=0.0005;THETA=0.0009;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 69820372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.495;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4487;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69820383 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.760;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.5931;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69820411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.682;LDAF=0.0105;AVGPOST=0.9951;RSQ=0.8191;ERATE=0.0006;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69820446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9770;AVGPOST=0.9978;RSQ=0.9648;ERATE=0.0004;THETA=0.0002;AC=2136;AN=2184 GT:DS:GL:BD 0.97802198 1 1 69820459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6432;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69820503 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.816;LDAF=0.0054;AVGPOST=0.9968;RSQ=0.7359;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69820912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.571;LDAF=0.0050;AVGPOST=0.9927;RSQ=0.4407;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69820942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0357;AVGPOST=0.9982;RSQ=0.9785;ERATE=0.0004;THETA=0.0005;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 69821083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9313;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69821185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5944;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69821214 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0053;AVGPOST=0.9981;RSQ=0.8580;ERATE=0.0006;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69821234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0806;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0003;THETA=0.0003;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 69821335 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.9061;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69821697 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9651;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69821805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4468;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69821997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0450;AVGPOST=0.9993;RSQ=0.9924;ERATE=0.0004;THETA=0.0003;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 69822033 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0068;AVGPOST=0.9962;RSQ=0.7922;ERATE=0.0006;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69822162 rs11425211 C CA 32841 PASS INDEL;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4588;AVGPOST=0.9800;RSQ=0.9702;ERATE=0.0039;THETA=0.0004;AC=1002;AN=2184 GT:DS:GL:BD 0.45879120 0 1 69822179 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0116;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69822197 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0410;AVGPOST=0.9992;RSQ=0.9916;ERATE=0.0004;THETA=0.0005;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69822332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0018;AVGPOST=0.9978;RSQ=0.5420;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69822349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0805;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0004;THETA=0.0004;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 69822437 . G GA 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5470;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69822523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0813;AVGPOST=0.9983;RSQ=0.9909;ERATE=0.0004;THETA=0.0005;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 69822573 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4788;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69822580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.6878;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69822606 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0066;AVGPOST=0.9995;RSQ=0.9678;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69822632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69822673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5592;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69822692 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0073;AVGPOST=0.9991;RSQ=0.9521;ERATE=0.0004;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69822706 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0407;AVGPOST=0.9995;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69822819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0067;AVGPOST=0.9985;RSQ=0.9118;ERATE=0.0005;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69822826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0340;AVGPOST=0.9977;RSQ=0.9715;ERATE=0.0003;THETA=0.0005;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 69822902 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0047;AVGPOST=0.9996;RSQ=0.9594;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69822905 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5296;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69823175 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.418;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5395;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69823242 rs34767135 TCAA T 7213 PASS INDEL;BAVGPOST=0.993;BRSQ=0.956;LDAF=0.0896;AVGPOST=0.9861;RSQ=0.9256;ERATE=0.0055;THETA=0.0003;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 69823367 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7455;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69823383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0442;AVGPOST=0.9991;RSQ=0.9898;ERATE=0.0003;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69823520 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=0.9992;RSQ=0.9712;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69823545 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.680;LDAF=0.0318;AVGPOST=0.9681;RSQ=0.5901;ERATE=0.0081;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69823594 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.9723;AVGPOST=0.9840;RSQ=0.7529;ERATE=0.0021;THETA=0.0013;AC=2134;AN=2184 GT:DS:GL:BD 0.97710621 1 1 69823660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.975;LDAF=0.1044;AVGPOST=0.9909;RSQ=0.9620;ERATE=0.0009;THETA=0.0004;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 69823661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.680;LDAF=0.0122;AVGPOST=0.9929;RSQ=0.7688;ERATE=0.0006;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69823761 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0385;AVGPOST=0.9996;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 69823775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69823920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69823956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69823996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69823997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69824018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69824131 rs68155428 A ATG 5119 PASS INDEL;BAVGPOST=0.931;BRSQ=0.823;LDAF=0.2827;AVGPOST=0.8617;RSQ=0.7277;ERATE=0.0128;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 69824218 . T TAC 108 PASS INDEL;BAVGPOST=0.969;BRSQ=0.174;LDAF=0.0534;AVGPOST=0.9133;RSQ=0.3304;ERATE=0.0071;THETA=0.0009;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 69824231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69824278 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.756;LDAF=0.0108;AVGPOST=0.9950;RSQ=0.8211;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69824399 . G GCTGCCA 1638 PASS INDEL;BAVGPOST=0.993;BRSQ=0.844;LDAF=0.0181;AVGPOST=0.9936;RSQ=0.8625;ERATE=0.0009;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69824447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7669;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69824480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8695;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69824646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69824661 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69824785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69824804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69824839 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69825002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69825059 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69825163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8499;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69825194 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2390;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0004;THETA=0.0003;AC=523;AN=2184 GT:DS:GL:BD 0.23946886 0 1 69825298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69825538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69825556 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69825557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69825724 rs60925079 A AC 208 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8007;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69825783 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69825812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9360;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69825991 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9994;RSQ=0.8758;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69826032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69826383 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0433;AVGPOST=0.9980;RSQ=0.9812;ERATE=0.0005;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 69826402 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69826413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0043;AVGPOST=0.9953;RSQ=0.5875;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69826414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0079;AVGPOST=0.9984;RSQ=0.9112;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69826429 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.708;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5544;ERATE=0.0007;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69826474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5580;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69826568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.450;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4715;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69826569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0262;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69826643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69826726 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69826853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69826876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0133;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69826958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8998;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69827084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0245;AVGPOST=0.9977;RSQ=0.9658;ERATE=0.0009;THETA=0.0002;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 69827388 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827472 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827475 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827480 . T TA 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827490 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69827534 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0008;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69827621 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69827775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9791;ERATE=0.0010;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69827804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69827991 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69828094 . AAAG A 707 PASS INDEL;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0047;AVGPOST=0.9991;RSQ=0.9129;ERATE=0.0005;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69828152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69828192 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0077;AVGPOST=0.9983;RSQ=0.9007;ERATE=0.0010;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69828494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0046;AVGPOST=0.9977;RSQ=0.7871;ERATE=0.0008;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69828498 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.961;LDAF=0.0230;AVGPOST=0.9963;RSQ=0.9330;ERATE=0.0004;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69828531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0003;THETA=0.0009;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69828591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.7291;AVGPOST=0.9930;RSQ=0.9869;ERATE=0.0016;THETA=0.0003;AC=1591;AN=2184 GT:DS:GL:BD 0.72847986 1 1 69828655 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69828691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0153;AVGPOST=0.9987;RSQ=0.9659;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69828782 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6671;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69828989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8891;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69829013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69829101 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69829125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.868;LDAF=0.0327;AVGPOST=0.9972;RSQ=0.9612;ERATE=0.0003;THETA=0.0007;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69829177 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.9042;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69829191 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8111;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69829207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2314;AVGPOST=0.9957;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 69829408 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69829412 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8061;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69829487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5241;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69829636 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0123;AVGPOST=0.9988;RSQ=0.9656;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69829673 rs35255398 A AT 358 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9104;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69829800 rs71096388 TC T 22739 PASS INDEL;BAVGPOST=0.989;BRSQ=0.974;LDAF=0.2615;AVGPOST=0.9944;RSQ=0.9893;ERATE=0.0008;THETA=0.0002;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 69829809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.561;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8502;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69829845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7071;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69829914 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7038;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69830027 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1524;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0004;THETA=0.0008;AC=333;AN=2184 GT:DS:GL:BD 0.15247253 0 1 69830034 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2437;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 69830116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0036;AVGPOST=0.9987;RSQ=0.8373;ERATE=0.0006;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69830132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1914;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0004;THETA=0.0004;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 69830456 rs34450829 AT A 82 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8492;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69830480 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.8331;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69830562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2438;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0005;THETA=0.0004;AC=532;AN=2184 GT:DS:GL:BD 0.24358974 0 1 69830625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8145;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69830641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0042;AVGPOST=0.9993;RSQ=0.9303;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69830655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0403;AVGPOST=0.9981;RSQ=0.9811;ERATE=0.0004;THETA=0.0003;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69830714 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1915;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 69830803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0533;AVGPOST=0.9983;RSQ=0.9862;ERATE=0.0003;THETA=0.0003;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 69830851 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7269;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69830899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0078;AVGPOST=0.9979;RSQ=0.8832;ERATE=0.0006;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69830925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69830926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0010;AVGPOST=0.9981;RSQ=0.2820;ERATE=0.0004;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69830930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4276;AVGPOST=0.9974;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 69830948 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6072;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69831097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5195;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69831105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69831114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69831188 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7666;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69831420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0218;AVGPOST=0.9979;RSQ=0.9634;ERATE=0.0004;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69831421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0062;AVGPOST=0.9975;RSQ=0.8563;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69831455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69831513 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69831559 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0527;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 69831926 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9595;ERATE=0.0003;THETA=0.0013;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69831929 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69832108 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2758;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0007;THETA=0.0009;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 69832149 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69832701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5281;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69832708 rs11295369 TG T 33335 PASS INDEL;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4282;AVGPOST=0.9966;RSQ=0.9943;ERATE=0.0005;THETA=0.0004;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 69832885 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69832899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69832968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9988;RSQ=0.9142;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69832979 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9220;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69833007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7638;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69833079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0134;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69833265 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69833280 . G GA 8 PASS INDEL;BAVGPOST=0.998;BRSQ=0.452;LDAF=0.0057;AVGPOST=0.9947;RSQ=0.6810;ERATE=0.0006;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69833319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1519;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0004;THETA=0.0008;AC=332;AN=2184 GT:DS:GL:BD 0.15201466 0 1 69833326 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9430;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69833334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8696;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69833385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.678;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7383;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69833516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.5916;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69833659 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0034;AVGPOST=0.9959;RSQ=0.5246;ERATE=0.0009;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69833681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.695;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5659;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69833826 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.900;LDAF=0.0105;AVGPOST=0.9934;RSQ=0.7627;ERATE=0.0007;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69834723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.832;BRSQ=0.745;LDAF=0.3345;AVGPOST=0.8455;RSQ=0.7990;ERATE=0.0027;THETA=0.0011;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 69834760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.815;BRSQ=0.702;LDAF=0.3260;AVGPOST=0.8523;RSQ=0.8072;ERATE=0.0011;THETA=0.0020;AC=723;AN=2184 GT:DS:GL:BD 0.33104396 0 1 69834764 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.437;LDAF=0.0093;AVGPOST=0.9888;RSQ=0.5142;ERATE=0.0009;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69834919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.706;LDAF=0.0223;AVGPOST=0.9840;RSQ=0.7230;ERATE=0.0015;THETA=0.0029;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69835238 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.943;LDAF=0.4576;AVGPOST=0.9427;RSQ=0.9311;ERATE=0.0006;THETA=0.0006;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 69835366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0524;AVGPOST=0.9929;RSQ=0.9460;ERATE=0.0005;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 69835393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.949;LDAF=0.4628;AVGPOST=0.9478;RSQ=0.9368;ERATE=0.0012;THETA=0.0012;AC=1004;AN=2184 GT:DS:GL:BD 0.45970696 0 1 69835396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.541;LDAF=0.0038;AVGPOST=0.9957;RSQ=0.5309;ERATE=0.0009;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69835415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0331;AVGPOST=0.9972;RSQ=0.9706;ERATE=0.0006;THETA=0.0018;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 69835433 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0187;AVGPOST=0.9972;RSQ=0.9343;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69835445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.954;BRSQ=0.940;LDAF=0.5094;AVGPOST=0.9337;RSQ=0.9193;ERATE=0.0029;THETA=0.0006;AC=1117;AN=2184 GT:DS:GL:BD 0.51144689 1 1 69835486 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.584;LDAF=0.0376;AVGPOST=0.9744;RSQ=0.7306;ERATE=0.0011;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69835516 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0085;AVGPOST=0.9955;RSQ=0.7895;ERATE=0.0006;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69835551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.503;LDAF=0.0072;AVGPOST=0.9938;RSQ=0.6627;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69835578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.813;LDAF=0.0587;AVGPOST=0.9612;RSQ=0.7588;ERATE=0.0029;THETA=0.0009;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69835630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.845;LDAF=0.0161;AVGPOST=0.9913;RSQ=0.8163;ERATE=0.0004;THETA=0.0008;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69835646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.943;LDAF=0.4626;AVGPOST=0.9228;RSQ=0.9055;ERATE=0.0061;THETA=0.0004;AC=1013;AN=2184 GT:DS:GL:BD 0.46382785 0 1 69835665 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4208;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69835669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0050;AVGPOST=0.9982;RSQ=0.8290;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69835773 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.721;LDAF=0.0044;AVGPOST=0.9933;RSQ=0.4243;ERATE=0.0012;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69835879 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69835966 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6585;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69835973 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0024;AVGPOST=0.9970;RSQ=0.4706;ERATE=0.0007;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69835978 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5399;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69836040 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.684;LDAF=0.0006;AVGPOST=0.9988;RSQ=0.1928;ERATE=0.0004;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69836044 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0032;AVGPOST=0.9954;RSQ=0.4363;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69836159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0086;AVGPOST=0.9985;RSQ=0.9456;ERATE=0.0005;THETA=0.0016;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69836161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.968;LDAF=0.5009;AVGPOST=0.9608;RSQ=0.9515;ERATE=0.0005;THETA=0.0006;AC=1083;AN=2184 GT:DS:GL:BD 0.49587911 0 1 69836208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5567;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69836217 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.968;LDAF=0.4823;AVGPOST=0.9621;RSQ=0.9531;ERATE=0.0005;THETA=0.0008;AC=1043;AN=2184 GT:DS:GL:BD 0.47756410 0 1 69836224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8040;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69836235 . C CT 16 PASS INDEL;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0031;AVGPOST=0.9948;RSQ=0.2596;ERATE=0.0007;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69836379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.964;LDAF=0.5362;AVGPOST=0.9596;RSQ=0.9484;ERATE=0.0005;THETA=0.0005;AC=1156;AN=2184 GT:DS:GL:BD 0.52930403 1 1 69836397 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9585;ERATE=0.0004;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69836415 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0167;AVGPOST=0.9938;RSQ=0.8629;ERATE=0.0005;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69836436 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.8671;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69836489 . A AG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.694;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5560;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69836512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.968;LDAF=0.5707;AVGPOST=0.9620;RSQ=0.9507;ERATE=0.0004;THETA=0.0004;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 69836550 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0065;AVGPOST=0.9953;RSQ=0.6734;ERATE=0.0016;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69836612 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.968;LDAF=0.5375;AVGPOST=0.9610;RSQ=0.9504;ERATE=0.0004;THETA=0.0027;AC=1161;AN=2184 GT:DS:GL:BD 0.53159338 1 1 69836647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0074;AVGPOST=0.9967;RSQ=0.8662;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69836744 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.4835;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69836825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.963;LDAF=0.5389;AVGPOST=0.9598;RSQ=0.9489;ERATE=0.0004;THETA=0.0005;AC=1166;AN=2184 GT:DS:GL:BD 0.53388280 1 1 69836849 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4111;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69836859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.962;LDAF=0.5765;AVGPOST=0.9594;RSQ=0.9475;ERATE=0.0006;THETA=0.0048;AC=1247;AN=2184 GT:DS:GL:BD 0.57097071 1 1 69836861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.833;LDAF=0.0092;AVGPOST=0.9980;RSQ=0.9098;ERATE=0.0004;THETA=0.0063;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69836914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.722;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5604;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69836968 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8921;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69837138 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6468;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69837305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9982;ERATE=0.0003;THETA=0.0038;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69837328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8218;ERATE=0.0003;THETA=0.0094;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69837358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6213;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69837445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7045;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69837452 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69837530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8978;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69837547 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.893;LDAF=0.0131;AVGPOST=0.9963;RSQ=0.8787;ERATE=0.0006;THETA=0.0019;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69837551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69837564 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6725;AVGPOST=0.9966;RSQ=0.9940;ERATE=0.0004;THETA=0.0006;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 69837596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0438;AVGPOST=0.9990;RSQ=0.9917;ERATE=0.0003;THETA=0.0009;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69837649 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8949;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69837709 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.519;LDAF=0.0025;AVGPOST=0.9963;RSQ=0.3849;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69837716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0088;AVGPOST=0.9983;RSQ=0.9224;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69837787 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69837788 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69837892 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69837929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0321;AVGPOST=0.9991;RSQ=0.9887;ERATE=0.0004;THETA=0.0005;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69838031 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.5772;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69838034 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6292;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0007;THETA=0.0006;AC=1373;AN=2184 GT:DS:GL:BD 0.62866300 1 1 69838118 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9163;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69838234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69838241 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69838248 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69838286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.6413;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69838314 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0358;AVGPOST=0.9998;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 69838330 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0440;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 69838489 . GGT G 5547 PASS INDEL;BAVGPOST=0.996;BRSQ=0.953;LDAF=0.0359;AVGPOST=0.9994;RSQ=0.9920;ERATE=0.0004;THETA=0.0004;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 69838511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69838516 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69838518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.6272;AVGPOST=0.9854;RSQ=0.9790;ERATE=0.0027;THETA=0.0003;AC=1369;AN=2184 GT:DS:GL:BD 0.62683153 1 1 69838523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.735;LDAF=0.0132;AVGPOST=0.9911;RSQ=0.7334;ERATE=0.0004;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69838531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6891;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69838619 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0076;AVGPOST=0.9956;RSQ=0.7734;ERATE=0.0007;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69838637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5441;ERATE=0.0006;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69838677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.741;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6350;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69838679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.610;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8047;ERATE=0.0004;THETA=0.0056;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69838750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7425;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0003;THETA=0.0011;AC=1621;AN=2184 GT:DS:GL:BD 0.74221611 1 1 69838853 . CA C 429 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8802;ERATE=0.0003;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69838859 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69838902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7517;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69838919 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69839220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6736;AVGPOST=0.9967;RSQ=0.9947;ERATE=0.0005;THETA=0.0004;AC=1471;AN=2184 GT:DS:GL:BD 0.67353481 1 1 69839221 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.720;LDAF=0.0045;AVGPOST=0.9963;RSQ=0.7240;ERATE=0.0004;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69839226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69839282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3432;AVGPOST=0.9898;RSQ=0.9826;ERATE=0.0011;THETA=0.0004;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 69839406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9476;ERATE=0.0003;THETA=0.0074;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69839421 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7420;AVGPOST=0.9970;RSQ=0.9951;ERATE=0.0004;THETA=0.0005;AC=1620;AN=2184 GT:DS:GL:BD 0.74175823 1 1 69839440 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6724;AVGPOST=0.9961;RSQ=0.9945;ERATE=0.0004;THETA=0.0004;AC=1469;AN=2184 GT:DS:GL:BD 0.67261904 1 1 69839456 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0128;AVGPOST=0.9991;RSQ=0.9791;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69839468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7409;AVGPOST=0.9960;RSQ=0.9928;ERATE=0.0006;THETA=0.0002;AC=1618;AN=2184 GT:DS:GL:BD 0.74084246 1 1 69839476 . CA C 56 PASS INDEL;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.5363;ERATE=0.0008;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69839492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7059;AVGPOST=0.9977;RSQ=0.9958;ERATE=0.0006;THETA=0.0006;AC=1541;AN=2184 GT:DS:GL:BD 0.70558608 1 1 69839556 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8033;ERATE=0.0005;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69839643 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0309;AVGPOST=0.9989;RSQ=0.9882;ERATE=0.0004;THETA=0.0021;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69839657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7582;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69839691 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0057;AVGPOST=0.9996;RSQ=0.9660;ERATE=0.0003;THETA=0.0031;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69839784 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0105;AVGPOST=0.9950;RSQ=0.8138;ERATE=0.0010;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69839840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9382;ERATE=0.0003;THETA=0.0037;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69840118 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5701;AVGPOST=0.9951;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 69840227 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0060;AVGPOST=0.9994;RSQ=0.9593;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69840236 . GA G 114 PASS INDEL;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69840273 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8411;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69840331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.654;LDAF=0.0075;AVGPOST=0.9937;RSQ=0.6632;ERATE=0.0012;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69840386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0635;AVGPOST=0.9986;RSQ=0.9902;ERATE=0.0003;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69840457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5072;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69840475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69840547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.3131;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69840642 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0095;AVGPOST=0.9985;RSQ=0.9319;ERATE=0.0005;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69840667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.937;LDAF=0.1433;AVGPOST=0.9922;RSQ=0.9756;ERATE=0.0005;THETA=0.0007;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 69840770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.938;LDAF=0.1420;AVGPOST=0.9945;RSQ=0.9828;ERATE=0.0004;THETA=0.0003;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69840780 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.936;LDAF=0.0158;AVGPOST=0.9991;RSQ=0.9757;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69840853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7877;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69840940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69840973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69841075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69841120 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69841122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1993;AVGPOST=0.9936;RSQ=0.9863;ERATE=0.0004;THETA=0.0004;AC=432;AN=2184 GT:DS:GL:BD 0.19780220 0 1 69841163 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0222;AVGPOST=0.9984;RSQ=0.9673;ERATE=0.0007;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69841230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0522;AVGPOST=0.9990;RSQ=0.9920;ERATE=0.0003;THETA=0.0005;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 69841262 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69841266 . A AT 2202 PASS INDEL;BAVGPOST=0.981;BRSQ=0.753;LDAF=0.0294;AVGPOST=0.9921;RSQ=0.9004;ERATE=0.0007;THETA=0.0005;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69841379 . T TA 4429 PASS INDEL;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0725;AVGPOST=0.9968;RSQ=0.9809;ERATE=0.0005;THETA=0.0003;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 69841381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0082;AVGPOST=0.9933;RSQ=0.7121;ERATE=0.0008;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69841484 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.950;LDAF=0.0758;AVGPOST=0.9864;RSQ=0.9235;ERATE=0.0015;THETA=0.0004;AC=157;AN=2184 GT:DS:GL:BD 0.07188645 0 1 69841491 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9965;RSQ=0.7703;ERATE=0.0010;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69841497 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.777;LDAF=0.0110;AVGPOST=0.9931;RSQ=0.7310;ERATE=0.0005;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69841605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0114;AVGPOST=0.9948;RSQ=0.8183;ERATE=0.0008;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69841655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0221;AVGPOST=0.9947;RSQ=0.9100;ERATE=0.0005;THETA=0.0017;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69841693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5545;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69841749 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.661;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.6083;ERATE=0.0005;THETA=0.0017;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69841752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0692;AVGPOST=0.9989;RSQ=0.9919;ERATE=0.0004;THETA=0.0004;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 69841753 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.974;LDAF=0.0699;AVGPOST=0.9989;RSQ=0.9928;ERATE=0.0004;THETA=0.0047;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 69841794 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0697;AVGPOST=0.9977;RSQ=0.9846;ERATE=0.0007;THETA=0.0002;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 69841889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0698;AVGPOST=0.9973;RSQ=0.9840;ERATE=0.0006;THETA=0.0004;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 69841895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.585;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7327;ERATE=0.0004;THETA=0.0029;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69841982 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5877;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69842083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.588;LDAF=0.0199;AVGPOST=0.9800;RSQ=0.5903;ERATE=0.0011;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69842135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.8265;AVGPOST=0.9816;RSQ=0.9525;ERATE=0.0013;THETA=0.0004;AC=1814;AN=2184 GT:DS:GL:BD 0.83058608 1 1 69842139 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.815;LDAF=0.0162;AVGPOST=0.9964;RSQ=0.9043;ERATE=0.0008;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69842142 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0481;AVGPOST=0.9996;RSQ=0.9959;ERATE=0.0003;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 69842193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0083;AVGPOST=0.9997;RSQ=0.9857;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69842257 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0480;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 69842589 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69842601 . TCAC T 8950 PASS INDEL;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0679;AVGPOST=0.9992;RSQ=0.9945;ERATE=0.0003;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69842834 . GA G 4551 PASS INDEL;BAVGPOST=0.995;BRSQ=0.963;LDAF=0.0675;AVGPOST=0.9986;RSQ=0.9901;ERATE=0.0004;THETA=0.0006;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69843069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69843128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7293;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69843147 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6049;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69843296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0682;AVGPOST=0.9987;RSQ=0.9935;ERATE=0.0003;THETA=0.0016;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69843325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9646;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69843326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=0.9996;RSQ=0.9799;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69843365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0213;AVGPOST=0.9995;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69843401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9993;RSQ=0.9394;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69843402 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7684;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69843415 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.927;LDAF=0.0271;AVGPOST=0.9905;RSQ=0.8501;ERATE=0.0005;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 69843494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.613;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7140;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69843574 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7822;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69843811 . GT G 80 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.6227;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69843858 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0677;AVGPOST=0.9997;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69844033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4961;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69844118 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0681;AVGPOST=0.9982;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69844130 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4770;AVGPOST=0.9962;RSQ=0.9953;ERATE=0.0005;THETA=0.0003;AC=1042;AN=2184 GT:DS:GL:BD 0.47710621 0 1 69844291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8070;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69844376 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6525;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69844401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4764;AVGPOST=0.9975;RSQ=0.9968;ERATE=0.0003;THETA=0.0005;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 69844431 . CAAAT C 369 PASS INDEL;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7430;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69844468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69844524 . TGAGA T 396 PASS INDEL;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9146;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69844685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7172;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69844706 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0677;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69844771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6805;AVGPOST=0.9970;RSQ=0.9950;ERATE=0.0004;THETA=0.0008;AC=1485;AN=2184 GT:DS:GL:BD 0.67994505 1 1 69845071 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69845085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0353;AVGPOST=0.9997;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 69845121 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0959;AVGPOST=0.9985;RSQ=0.9922;ERATE=0.0005;THETA=0.0005;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 69845137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69845161 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845293 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0394;AVGPOST=0.9997;RSQ=0.9965;ERATE=0.0003;THETA=0.0005;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69845331 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6102;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69845466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7753;AVGPOST=0.9987;RSQ=0.9967;ERATE=0.0004;THETA=0.0005;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 69845506 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9369;AVGPOST=0.9984;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=2047;AN=2184 GT:DS:GL:BD 0.93727106 1 1 69845602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9997;RSQ=0.9884;ERATE=0.0003;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69845652 . ATT A 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4727;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8299;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69845738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7855;ERATE=0.0011;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69845764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8456;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69845769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0288;AVGPOST=0.9995;RSQ=0.9909;ERATE=0.0003;THETA=0.0009;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 69845897 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0394;AVGPOST=0.9996;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69845904 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69845908 . AAATC A 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6389;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69845942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69845961 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9280;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69845963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69845990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69845995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8383;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69846146 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69846179 . TGC T 143 PASS INDEL;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69846190 . GCA G 411 PASS INDEL;BAVGPOST=0.983;BRSQ=0.727;LDAF=0.0466;AVGPOST=0.9602;RSQ=0.6216;ERATE=0.0221;THETA=0.0006;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 69846191 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7335;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69846269 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69846306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7751;AVGPOST=0.9996;RSQ=0.9990;ERATE=0.0003;THETA=0.0005;AC=1693;AN=2184 GT:DS:GL:BD 0.77518314 1 1 69846350 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69846358 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6810;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0006;THETA=0.0006;AC=1487;AN=2184 GT:DS:GL:BD 0.68086082 1 1 69846398 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69846424 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0049;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69846470 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0394;AVGPOST=0.9996;RSQ=0.9960;ERATE=0.0004;THETA=0.0009;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69846577 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0891;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=195;AN=2184 GT:DS:GL:BD 0.08928572 0 1 69846675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6859;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0005;AC=1498;AN=2184 GT:DS:GL:BD 0.68589741 1 1 69846688 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69846699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.7762;AVGPOST=0.9991;RSQ=0.9978;ERATE=0.0003;THETA=0.0003;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 69846751 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5739;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69846752 . AG A 780 PASS INDEL;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0056;AVGPOST=0.9968;RSQ=0.7756;ERATE=0.0006;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69846755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0227;AVGPOST=0.9994;RSQ=0.9885;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69846865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0188;AVGPOST=0.9990;RSQ=0.9806;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69846874 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69846877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0030;AVGPOST=0.9984;RSQ=0.8186;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69846914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0058;AVGPOST=0.9970;RSQ=0.8101;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69846920 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6844;AVGPOST=0.9979;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 69846946 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8281;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69847017 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0187;AVGPOST=0.9992;RSQ=0.9847;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69847048 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8556;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69847080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5956;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69847146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6450;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69847172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8713;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69847174 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0073;AVGPOST=0.9978;RSQ=0.8543;ERATE=0.0009;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69847259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.0866;AVGPOST=0.9973;RSQ=0.9875;ERATE=0.0004;THETA=0.0006;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 69847368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8308;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69847411 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9993;RSQ=0.9403;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69847589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5270;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69847595 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8625;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69847617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7460;ERATE=0.0004;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69847684 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.8946;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69847698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69847772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0239;AVGPOST=0.9997;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69847777 rs57813821 AC A 1186 PASS INDEL;BAVGPOST=0.998;BRSQ=0.877;LDAF=0.0077;AVGPOST=0.9972;RSQ=0.8749;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69847820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9586;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69847846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5195;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69847879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0051;AVGPOST=0.9995;RSQ=0.9540;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69847963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69847975 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69848221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8237;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69848259 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0059;AVGPOST=0.9981;RSQ=0.8912;ERATE=0.0003;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69848277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8557;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69848320 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69848467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0948;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0004;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 69848502 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9125;AVGPOST=0.9987;RSQ=0.9944;ERATE=0.0003;THETA=0.0007;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 69848597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7986;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69848598 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.943;LDAF=0.2674;AVGPOST=0.9692;RSQ=0.9450;ERATE=0.0012;THETA=0.0003;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 69848682 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4845;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69848684 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0947;AVGPOST=0.9991;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 69848699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69848717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6159;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69848830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9141;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0005;THETA=0.0010;AC=1998;AN=2184 GT:DS:GL:BD 0.91483516 1 1 69848836 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9754;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69848867 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9130;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=1995;AN=2184 GT:DS:GL:BD 0.91346157 1 1 69848898 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69848907 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.4124;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69848934 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69848959 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0391;AVGPOST=0.9994;RSQ=0.9933;ERATE=0.0003;THETA=0.0007;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 69849048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8122;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69849088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5645;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69849121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.947;LDAF=0.0146;AVGPOST=0.9968;RSQ=0.9148;ERATE=0.0004;THETA=0.0009;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69849122 . TG T 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6633;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69849168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8091;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69849181 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8977;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69849191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9136;AVGPOST=0.9987;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=1997;AN=2184 GT:DS:GL:BD 0.91437727 1 1 69849220 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0104;AVGPOST=0.9972;RSQ=0.8969;ERATE=0.0005;THETA=0.0007;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69849221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0055;AVGPOST=0.9987;RSQ=0.9050;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69849329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5808;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69849338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7754;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69849400 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5218;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69849412 . C CT 2307 PASS INDEL;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0373;AVGPOST=0.9918;RSQ=0.9101;ERATE=0.0009;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 69849456 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.400;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.5211;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69849462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8141;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69849514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9507;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69849544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9558;ERATE=0.0004;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69849586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0319;AVGPOST=0.9989;RSQ=0.9862;ERATE=0.0004;THETA=0.0012;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69849593 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0953;AVGPOST=0.9984;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 69849612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.985;LDAF=0.6265;AVGPOST=0.9903;RSQ=0.9861;ERATE=0.0007;THETA=0.0004;AC=1370;AN=2184 GT:DS:GL:BD 0.62728935 1 1 69849636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0067;AVGPOST=0.9988;RSQ=0.9297;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69849641 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0150;AVGPOST=0.9993;RSQ=0.9834;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 69849688 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0031;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69849709 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6788;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 69849788 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9782;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69849798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6839;AVGPOST=0.9968;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=1494;AN=2184 GT:DS:GL:BD 0.68406594 1 1 69849847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0960;AVGPOST=0.9988;RSQ=0.9939;ERATE=0.0005;THETA=0.0004;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 69849901 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6802;AVGPOST=0.9966;RSQ=0.9952;ERATE=0.0006;THETA=0.0009;AC=1484;AN=2184 GT:DS:GL:BD 0.67948717 1 1 69850059 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1231;AVGPOST=0.9976;RSQ=0.9913;ERATE=0.0004;THETA=0.0003;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 69850234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3172;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 69850331 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.0301;AVGPOST=0.9969;RSQ=0.9604;ERATE=0.0004;THETA=0.0003;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 69850404 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0218;AVGPOST=0.9996;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69850500 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9999;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850560 . AC A 1626 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9999;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69850594 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850604 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9942;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850612 rs72189057 AC A 1419 PASS INDEL;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0157;AVGPOST=0.9996;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850615 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69850659 rs35595206 GA G 2293 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0158;AVGPOST=0.9995;RSQ=0.9882;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69850665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69850686 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0261;AVGPOST=0.9998;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69850983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7255;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69851004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69851025 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9981;RSQ=0.6392;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69851035 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69851080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8536;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69851183 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.7194;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69851186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0051;AVGPOST=0.9988;RSQ=0.9010;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69851190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0141;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69851258 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0142;AVGPOST=0.9997;RSQ=0.9906;ERATE=0.0003;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69851262 . TC T 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4414;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69851299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6785;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69851350 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.676;LDAF=0.0039;AVGPOST=0.9975;RSQ=0.7510;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69851374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0041;AVGPOST=0.9995;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69851386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0143;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69851486 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69851595 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0144;AVGPOST=0.9995;RSQ=0.9820;ERATE=0.0004;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69851607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6674;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69851685 rs71717647 CCAAGAACA C 3924 PASS INDEL;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0157;AVGPOST=0.9989;RSQ=0.9704;ERATE=0.0005;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69851763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1278;AVGPOST=0.9992;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 69851854 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4826;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69851911 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0040;AVGPOST=0.9982;RSQ=0.8121;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69851978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8326;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69852270 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0142;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69852299 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1699;AVGPOST=0.9989;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 69852437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9197;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69852527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0160;AVGPOST=0.9989;RSQ=0.9723;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69852548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69852691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.837;LDAF=0.4140;AVGPOST=0.9081;RSQ=0.8079;ERATE=0.0676;THETA=0.0002;AC=906;AN=2184 GT:DS:GL:BD 0.41483516 0 1 69852705 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2285;AVGPOST=0.9980;RSQ=0.9958;ERATE=0.0003;THETA=0.0002;AC=497;AN=2184 GT:DS:GL:BD 0.22756410 0 1 69852828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0268;AVGPOST=0.9986;RSQ=0.9801;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69852830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69852856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5792;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69852868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0031;AVGPOST=0.9988;RSQ=0.8469;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69852952 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7407;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69852974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.8844;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69853116 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0107;AVGPOST=0.9941;RSQ=0.7972;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69853139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69853145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.9005;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69853174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1700;AVGPOST=0.9982;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 69853178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69853179 . GT G 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69853200 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1139;AVGPOST=0.9993;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=249;AN=2184 GT:DS:GL:BD 0.11401099 0 1 69853276 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8263;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69853303 . TTG T 165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7516;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69853312 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5458;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69853357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.754;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8080;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69853426 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0043;AVGPOST=0.9976;RSQ=0.7898;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69853444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69853455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9991;RSQ=0.9788;ERATE=0.0003;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69853491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0048;AVGPOST=0.9980;RSQ=0.8452;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69853494 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3152;AVGPOST=0.9966;RSQ=0.9931;ERATE=0.0007;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 69853528 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69853537 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1704;AVGPOST=0.9993;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 69853564 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69853847 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6407;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69853868 . T TA 13 PASS INDEL;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5953;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69854098 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0156;AVGPOST=0.9998;RSQ=0.9930;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69854101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0157;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69854143 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6388;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69854195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7060;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69854205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69854303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0075;AVGPOST=0.9986;RSQ=0.9356;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69854317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1142;AVGPOST=0.9984;RSQ=0.9944;ERATE=0.0003;THETA=0.0004;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 69854410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.1147;AVGPOST=0.9988;RSQ=0.9950;ERATE=0.0003;THETA=0.0002;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 69854415 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0056;AVGPOST=0.9967;RSQ=0.8004;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69854472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0142;AVGPOST=0.9998;RSQ=0.9937;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69854507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69854637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9667;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69854680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0086;AVGPOST=0.9992;RSQ=0.9575;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69854688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0146;AVGPOST=0.9991;RSQ=0.9720;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69854718 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6237;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69854724 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7574;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69854802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9442;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69854851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0079;AVGPOST=0.9992;RSQ=0.9559;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69854856 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8932;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69854898 . AT A 152 PASS INDEL;BAVGPOST=0.991;BRSQ=0.657;LDAF=0.0124;AVGPOST=0.9887;RSQ=0.6122;ERATE=0.0022;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69855009 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0054;AVGPOST=0.9959;RSQ=0.6869;ERATE=0.0013;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69855204 . CTTA C 113 PASS INDEL;BAVGPOST=0.999;BRSQ=0.828;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.7895;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69855284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6658;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69855394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0220;AVGPOST=0.9983;RSQ=0.9698;ERATE=0.0003;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69855409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8067;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69855414 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69855465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69855501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9626;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69855542 . CAT C 205 PASS INDEL;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69855552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7678;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69855560 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9993;RSQ=0.9687;ERATE=0.0004;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69855716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5817;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69855766 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.4992;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69855889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6056;ERATE=0.0004;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69855907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1579;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0003;THETA=0.0009;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 69855912 . G GA 573 PASS INDEL;BAVGPOST=0.981;BRSQ=0.590;LDAF=0.0367;AVGPOST=0.9578;RSQ=0.5152;ERATE=0.0120;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69855980 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69856003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.5688;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69856233 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.7078;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69856306 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69856345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.920;LDAF=0.0065;AVGPOST=0.9986;RSQ=0.9188;ERATE=0.0004;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69856373 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9548;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69856399 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6126;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69856515 . C CCAT 647 PASS INDEL;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7335;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69856655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69856703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69856952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0033;AVGPOST=0.9986;RSQ=0.8145;ERATE=0.0011;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69857025 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9721;ERATE=0.0003;THETA=0.0017;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69857153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69857167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69857324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1860;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69857661 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69857669 . TC T 100 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69857765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.7638;ERATE=0.0003;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69858028 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69858364 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.7104;ERATE=0.0008;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69858528 . CTA C 651 PASS INDEL;BAVGPOST=0.997;BRSQ=0.749;LDAF=0.0070;AVGPOST=0.9967;RSQ=0.8075;ERATE=0.0005;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69858539 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8474;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69858558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6264;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69858576 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0109;AVGPOST=0.9981;RSQ=0.9366;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69858589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9015;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69858750 . C CT 8 PASS INDEL;BAVGPOST=0.991;BRSQ=0.473;LDAF=0.0145;AVGPOST=0.9823;RSQ=0.4845;ERATE=0.0050;THETA=0.0010;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69858886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69858896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69858912 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8112;ERATE=0.0004;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69858924 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0792;AVGPOST=0.9995;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 69859042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9843;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69859051 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0072;AVGPOST=0.9980;RSQ=0.8947;ERATE=0.0003;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69859086 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2380;AVGPOST=0.9986;RSQ=0.9983;ERATE=0.0003;THETA=0.0012;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 69859202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.505;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5402;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69859254 . A AC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5070;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859447 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859482 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69859497 . AT A 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4822;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859612 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0416;AVGPOST=0.9982;RSQ=0.9854;ERATE=0.0004;THETA=0.0009;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 69859646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859772 . CTT C 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859821 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5968;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69859870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6832;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69859960 . CCA C 54 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4766;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69860097 . TC T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0033;AVGPOST=0.9955;RSQ=0.4402;ERATE=0.0013;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69860211 . TG T 898 PASS INDEL;BAVGPOST=0.941;BRSQ=0.563;LDAF=0.1106;AVGPOST=0.8765;RSQ=0.4796;ERATE=0.0244;THETA=0.0009;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 69860245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1114;AVGPOST=0.9967;RSQ=0.9898;ERATE=0.0006;THETA=0.0012;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 69860248 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0321;AVGPOST=0.9988;RSQ=0.9832;ERATE=0.0005;THETA=0.0016;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69860249 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6634;ERATE=0.0010;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69860266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69860451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8699;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69860543 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69860560 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.7360;AVGPOST=0.9957;RSQ=0.9911;ERATE=0.0006;THETA=0.0004;AC=1608;AN=2184 GT:DS:GL:BD 0.73626375 1 1 69860839 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0403;AVGPOST=0.9983;RSQ=0.9825;ERATE=0.0005;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 69860852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6343;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69860867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1257;AVGPOST=0.9991;RSQ=0.9964;ERATE=0.0003;THETA=0.0006;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 69861193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6401;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69861217 . AT A 35 PASS INDEL;BAVGPOST=0.968;BRSQ=0.339;LDAF=0.0519;AVGPOST=0.9314;RSQ=0.4490;ERATE=0.0165;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69861379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6958;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69861416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7674;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69861489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69861637 . CTTTCTCA C 1298 PASS INDEL;BAVGPOST=0.998;BRSQ=0.801;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9285;ERATE=0.0003;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69861750 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8063;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69861817 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0185;AVGPOST=0.9995;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69861892 . G GT 254 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4651;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69861935 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.910;LDAF=0.0791;AVGPOST=0.9863;RSQ=0.9360;ERATE=0.0005;THETA=0.0002;AC=174;AN=2184 GT:DS:GL:BD 0.07967033 0 1 69861952 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0878;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 69861976 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69862014 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69862089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9553;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69862159 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8025;ERATE=0.0004;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69862241 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9993;RSQ=0.8601;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69862385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0882;AVGPOST=0.9993;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 69862528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9799;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69862597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5249;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69862681 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.9923;AVGPOST=0.9987;RSQ=0.9439;ERATE=0.0004;THETA=0.0005;AC=2167;AN=2184 GT:DS:GL:BD 0.99221611 1 1 69862742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7027;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69862879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69862885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5560;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69862902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0647;AVGPOST=0.9992;RSQ=0.9943;ERATE=0.0003;THETA=0.0008;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 69863348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0823;AVGPOST=0.9988;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 69863361 rs71750799 AC A 8443 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0912;AVGPOST=0.9991;RSQ=0.9953;ERATE=0.0004;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 69863378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9729;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69863394 . TTC T 103 PASS INDEL;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69863459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0035;AVGPOST=0.9972;RSQ=0.7378;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69863520 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7276;ERATE=0.0006;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69863577 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0910;AVGPOST=0.9991;RSQ=0.9956;ERATE=0.0003;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 69863579 . AC A 8 PASS INDEL;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5040;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69863615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9995;RSQ=0.9557;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69863621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7138;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69863737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69863793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69863835 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0083;AVGPOST=0.9996;RSQ=0.9789;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69863864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8404;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69864048 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69864099 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6162;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69864222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5123;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69864236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69864350 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6172;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69864517 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8849;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69864581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1256;AVGPOST=0.9969;RSQ=0.9886;ERATE=0.0015;THETA=0.0002;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 69864617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0130;AVGPOST=0.9988;RSQ=0.9670;ERATE=0.0005;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69864674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.529;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.4999;ERATE=0.0014;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69864678 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6249;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69864698 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6733;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69864705 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2917;AVGPOST=0.9966;RSQ=0.9933;ERATE=0.0008;THETA=0.0004;AC=638;AN=2184 GT:DS:GL:BD 0.29212454 0 1 69864817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.735;LDAF=0.0274;AVGPOST=0.9874;RSQ=0.8379;ERATE=0.0006;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 69864874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2825;AVGPOST=0.9959;RSQ=0.9921;ERATE=0.0009;THETA=0.0002;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 69864905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69864964 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5718;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69865006 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8204;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69865267 . TTTTC T 19725 PASS INDEL;BAVGPOST=0.914;BRSQ=0.878;LDAF=0.4347;AVGPOST=0.9371;RSQ=0.9156;ERATE=0.0034;THETA=0.0010;AC=964;AN=2184 GT:DS:GL:BD 0.44139194 0 1 69865417 . TTTC T 21818 PASS INDEL;BAVGPOST=0.919;BRSQ=0.876;LDAF=0.4513;AVGPOST=0.9588;RSQ=0.9440;ERATE=0.0011;THETA=0.0004;AC=998;AN=2184 GT:DS:GL:BD 0.45695969 0 1 69865434 rs68080699 TC T 27263 PASS INDEL;BAVGPOST=0.901;BRSQ=0.844;LDAF=0.4866;AVGPOST=0.8719;RSQ=0.8178;ERATE=0.0270;THETA=0.0003;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 69865436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0065;AVGPOST=0.9943;RSQ=0.6496;ERATE=0.0007;THETA=0.0036;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69865471 rs71070743 C CAGGCTGG 59251 PASS INDEL;BAVGPOST=0.918;BRSQ=0.869;LDAF=0.4375;AVGPOST=0.9570;RSQ=0.9452;ERATE=0.0005;THETA=0.0005;AC=974;AN=2184 GT:DS:GL:BD 0.44597068 0 1 69865483 . G GCTGGAGC 56508 PASS INDEL;BAVGPOST=0.918;BRSQ=0.869;LDAF=0.4200;AVGPOST=0.9139;RSQ=0.8898;ERATE=0.0100;THETA=0.0005;AC=921;AN=2184 GT:DS:GL:BD 0.42170331 0 1 69865486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8627;ERATE=0.0003;THETA=0.0021;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69865504 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0113;AVGPOST=0.9943;RSQ=0.8087;ERATE=0.0006;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69865522 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9883;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69865597 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4722;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 69865721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0002;THETA=0.0054;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69865742 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69865783 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69865824 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2747;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0002;AC=599;AN=2184 GT:DS:GL:BD 0.27426741 0 1 69865842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69865933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4732;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0005;THETA=0.0005;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 69866071 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4714;AVGPOST=0.9987;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 69866126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69866248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7759;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69866252 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69866277 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9873;AVGPOST=0.9992;RSQ=0.9735;ERATE=0.0003;THETA=0.0007;AC=2157;AN=2184 GT:DS:GL:BD 0.98763734 1 1 69866347 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0129;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69866361 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0260;AVGPOST=0.9994;RSQ=0.9900;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69866393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4736;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0011;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 69866407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4738;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0004;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 69866499 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69866500 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0035;AVGPOST=0.9986;RSQ=0.8410;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69866579 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9551;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69866764 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0040;AVGPOST=0.9968;RSQ=0.7057;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69866870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4757;AVGPOST=0.9947;RSQ=0.9922;ERATE=0.0011;THETA=0.0003;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 69866985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=0.9983;RSQ=0.8318;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69867027 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5538;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69867039 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.681;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5572;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69867093 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4735;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0008;THETA=0.0004;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 69867286 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69867302 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4735;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0005;THETA=0.0002;AC=1032;AN=2184 GT:DS:GL:BD 0.47252747 0 1 69867309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69867337 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4726;AVGPOST=0.9973;RSQ=0.9964;ERATE=0.0006;THETA=0.0005;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 69867456 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9551;ERATE=0.0002;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69867474 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1946;AVGPOST=0.9996;RSQ=0.9989;ERATE=0.0002;THETA=0.0006;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 69867567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4727;AVGPOST=0.9965;RSQ=0.9954;ERATE=0.0007;THETA=0.0005;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 69867593 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0048;AVGPOST=0.9979;RSQ=0.8495;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69867647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69867659 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7878;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69867663 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5516;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69867706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4764;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0002;AC=1039;AN=2184 GT:DS:GL:BD 0.47573259 0 1 69867707 rs71783990 CCAAA C 51463 PASS INDEL;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.4722;AVGPOST=0.9942;RSQ=0.9920;ERATE=0.0009;THETA=0.0003;AC=1029;AN=2184 GT:DS:GL:BD 0.47115386 0 1 69867814 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69867912 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4710;AVGPOST=0.9970;RSQ=0.9959;ERATE=0.0004;THETA=0.0006;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 69867990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69868071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9872;AVGPOST=0.9990;RSQ=0.9732;ERATE=0.0002;THETA=0.0008;AC=2157;AN=2184 GT:DS:GL:BD 0.98763734 1 1 69868207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7659;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69868227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5309;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69868262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7140;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69868339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.2762;AVGPOST=0.9986;RSQ=0.9972;ERATE=0.0004;THETA=0.0008;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 69868451 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4720;AVGPOST=0.9974;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=1029;AN=2184 GT:DS:GL:BD 0.47115386 0 1 69868507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4730;AVGPOST=0.9972;RSQ=0.9961;ERATE=0.0004;THETA=0.0003;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 69868509 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4728;AVGPOST=0.9981;RSQ=0.9975;ERATE=0.0002;THETA=0.0002;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 69868532 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69868543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8851;ERATE=0.0006;THETA=0.0044;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69868601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8605;ERATE=0.0004;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69868618 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0002;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69868693 . TGG T 6262 PASS INDEL;BAVGPOST=0.860;BRSQ=0.791;LDAF=0.3508;AVGPOST=0.8520;RSQ=0.8052;ERATE=0.0142;THETA=0.0005;AC=781;AN=2184 GT:DS:GL:BD 0.35760072 0 1 69868698 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.962;LDAF=0.4487;AVGPOST=0.9820;RSQ=0.9775;ERATE=0.0003;THETA=0.0007;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 69868699 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.961;LDAF=0.4495;AVGPOST=0.9825;RSQ=0.9784;ERATE=0.0004;THETA=0.0004;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 69868700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69868766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9343;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69868780 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69868781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9987;RSQ=0.6357;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69869011 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69869095 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4729;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0004;THETA=0.0005;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 69869211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0029;AVGPOST=0.9985;RSQ=0.8179;ERATE=0.0002;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69869234 . G GT 30 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5328;ERATE=0.0008;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69869295 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.930;LDAF=0.0332;AVGPOST=0.9924;RSQ=0.9133;ERATE=0.0004;THETA=0.0001;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 69869305 . AT A 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0032;AVGPOST=0.9963;RSQ=0.5786;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69869334 rs34198079 C CA 73450 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4715;AVGPOST=0.9950;RSQ=0.9933;ERATE=0.0008;THETA=0.0005;AC=1028;AN=2184 GT:DS:GL:BD 0.47069597 0 1 69869353 . TAAAC T 191 PASS INDEL;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5080;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69869402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69869450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2793;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 69869505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.1205;AVGPOST=0.9964;RSQ=0.9874;ERATE=0.0005;THETA=0.0040;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 69869510 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.2778;AVGPOST=0.9990;RSQ=0.9981;ERATE=0.0004;THETA=0.0007;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 69869631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0009;AVGPOST=0.9984;RSQ=0.3561;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69869681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7266;ERATE=0.0002;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69869812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8448;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69869828 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.9949;AVGPOST=0.9991;RSQ=0.9302;ERATE=0.0002;THETA=0.0004;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 69869831 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69869891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2785;AVGPOST=0.9991;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=607;AN=2184 GT:DS:GL:BD 0.27793041 0 1 69869954 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69869980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7171;ERATE=0.0003;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69870014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2777;AVGPOST=0.9971;RSQ=0.9948;ERATE=0.0007;THETA=0.0002;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 69870040 . G GTC 107 PASS INDEL;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8212;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69870046 . GTC G 163 PASS INDEL;BAVGPOST=0.990;BRSQ=0.737;LDAF=0.0304;AVGPOST=0.9747;RSQ=0.6544;ERATE=0.0093;THETA=0.0017;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69870068 . A AT 15 PASS INDEL;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2784;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 69870150 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69870170 . CAT C 69 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870170 . CA C 645 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69870206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2787;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0005;THETA=0.0004;AC=606;AN=2184 GT:DS:GL:BD 0.27747253 0 1 69870253 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6142;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0086;AVGPOST=0.9984;RSQ=0.9255;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69870267 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.2439;AVGPOST=0.9863;RSQ=0.9761;ERATE=0.0020;THETA=0.0002;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 69870286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870403 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0077;AVGPOST=0.9998;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69870409 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.960;LDAF=0.0463;AVGPOST=0.9954;RSQ=0.9631;ERATE=0.0004;THETA=0.0005;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 69870455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870467 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870517 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870548 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6441;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69870558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5919;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69870591 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8718;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69870597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0132;AVGPOST=0.9990;RSQ=0.9704;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69870671 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0176;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69870770 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8531;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69870786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9727;ERATE=0.0004;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69870795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9805;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69870889 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870892 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9992;RSQ=0.8993;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69870928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69870982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6015;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69871019 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0006;AVGPOST=0.9987;RSQ=0.1847;ERATE=0.0004;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69871023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6027;AVGPOST=0.9981;RSQ=0.9963;ERATE=0.0003;THETA=0.0002;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 69871070 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69871101 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0838;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69871179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0056;AVGPOST=0.9990;RSQ=0.9295;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69871191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9915;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69871346 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8476;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69871363 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.5794;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69871398 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0705;AVGPOST=0.9993;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69871493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69871572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9927;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69871667 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0079;AVGPOST=0.9996;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69871740 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69871778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4815;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69871801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3519;AVGPOST=0.9991;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 69871817 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0907;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 69871885 . TG T 3131 PASS INDEL;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0175;AVGPOST=0.9997;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69871960 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69871971 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0706;AVGPOST=0.9992;RSQ=0.9944;ERATE=0.0004;THETA=0.0006;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69871980 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.9943;AVGPOST=0.9988;RSQ=0.9229;ERATE=0.0003;THETA=0.0003;AC=2172;AN=2184 GT:DS:GL:BD 0.99450547 1 1 69872122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9144;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69872165 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872173 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0091;AVGPOST=0.9977;RSQ=0.9051;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69872268 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69872278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8911;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69872308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0083;AVGPOST=0.9989;RSQ=0.9366;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872355 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.7734;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69872402 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0912;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0004;THETA=0.0002;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 69872424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8407;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69872605 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9871;ERATE=0.0003;THETA=0.0044;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2955;AVGPOST=0.9993;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=645;AN=2184 GT:DS:GL:BD 0.29532966 0 1 69872665 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69872666 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8848;ERATE=0.0017;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69872674 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9817;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69872741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0009;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69872750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69872961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69872964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69872990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 69873026 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69873094 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873110 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69873133 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69873195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9738;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69873223 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69873228 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69873249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9998;RSQ=0.9827;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69873307 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69873339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69873353 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9994;RSQ=0.9731;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69873354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69873373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69873374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0887;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 69873396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69873446 . C CAG 2262 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873498 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9984;RSQ=0.9106;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69873546 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9637;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69873549 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4462;AVGPOST=0.9958;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 69873553 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9996;RSQ=0.9783;ERATE=0.0003;THETA=0.0013;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873566 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9077;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69873590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0151;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69873597 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9709;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69873679 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0103;AVGPOST=0.9979;RSQ=0.9321;ERATE=0.0005;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69873756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0651;AVGPOST=0.9990;RSQ=0.9927;ERATE=0.0004;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 69873787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.949;LDAF=0.0661;AVGPOST=0.9968;RSQ=0.9788;ERATE=0.0004;THETA=0.0005;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 69873791 . GA G 796 PASS INDEL;BAVGPOST=0.995;BRSQ=0.859;LDAF=0.0214;AVGPOST=0.9926;RSQ=0.8574;ERATE=0.0006;THETA=0.0007;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 69874065 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.716;LDAF=0.0086;AVGPOST=0.9934;RSQ=0.7450;ERATE=0.0003;THETA=0.0002;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69874312 . G GAA 206 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8210;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69874494 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.708;LDAF=0.0085;AVGPOST=0.9932;RSQ=0.6867;ERATE=0.0015;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69874511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9985;RSQ=0.9510;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69874643 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0208;AVGPOST=0.9957;RSQ=0.9165;ERATE=0.0014;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69874645 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5195;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69874667 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.4985;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69874965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0155;AVGPOST=0.9991;RSQ=0.9763;ERATE=0.0004;THETA=0.0001;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69874985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0654;AVGPOST=0.9990;RSQ=0.9928;ERATE=0.0004;THETA=0.0003;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 69875193 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0653;AVGPOST=0.9992;RSQ=0.9939;ERATE=0.0005;THETA=0.0003;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 69875288 . GT G 102 PASS INDEL;BAVGPOST=0.991;BRSQ=0.092;LDAF=0.0875;AVGPOST=0.8406;RSQ=0.1439;ERATE=0.0022;THETA=0.0070;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69875615 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0110;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69875661 . AG A 9 PASS INDEL;BAVGPOST=0.956;BRSQ=0.085;LDAF=0.0854;AVGPOST=0.8537;RSQ=0.2090;ERATE=0.0069;THETA=0.0016;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69875730 . G GA 759 PASS INDEL;BAVGPOST=0.923;BRSQ=0.155;LDAF=0.1517;AVGPOST=0.7576;RSQ=0.2005;ERATE=0.0140;THETA=0.0065;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 69876889 . T TG 493 PASS INDEL;BAVGPOST=0.981;BRSQ=0.661;LDAF=0.0341;AVGPOST=0.9713;RSQ=0.6283;ERATE=0.0139;THETA=0.0070;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69877724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.679;LDAF=0.0346;AVGPOST=0.9804;RSQ=0.7814;ERATE=0.0005;THETA=0.0055;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69878399 . G GA 266 PASS INDEL;BAVGPOST=0.981;BRSQ=0.158;LDAF=0.0518;AVGPOST=0.9074;RSQ=0.2118;ERATE=0.0022;THETA=0.0078;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69880735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69882063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7278;ERATE=0.0008;THETA=0.0017;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69882389 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7307;ERATE=0.0015;THETA=0.0028;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69883989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.850;BRSQ=0.685;LDAF=0.6454;AVGPOST=0.8264;RSQ=0.6738;ERATE=0.0061;THETA=0.0056;AC=1402;AN=2184 GT:DS:GL:BD 0.64194137 1 1 69885170 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.903;LDAF=0.0493;AVGPOST=0.9856;RSQ=0.8893;ERATE=0.0005;THETA=0.0022;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 69886161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.821;LDAF=0.8489;AVGPOST=0.9163;RSQ=0.7535;ERATE=0.0040;THETA=0.0185;AC=1913;AN=2184 GT:DS:GL:BD 0.87591577 1 1 69886309 rs61416160 CTA C 8719 PASS INDEL;BAVGPOST=0.883;BRSQ=0.565;LDAF=0.1690;AVGPOST=0.8595;RSQ=0.5644;ERATE=0.0230;THETA=0.0172;AC=229;AN=2184 GT:DS:GL:BD 0.10485348 0 1 69886321 . GC G 31 PASS INDEL;BAVGPOST=0.998;BRSQ=0.369;LDAF=0.0179;AVGPOST=0.9713;RSQ=0.3567;ERATE=0.0014;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69886451 . CCT C 179 PASS INDEL;BAVGPOST=0.992;BRSQ=0.291;LDAF=0.0094;AVGPOST=0.9862;RSQ=0.3447;ERATE=0.0010;THETA=0.0097;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69887345 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.954;LDAF=0.0572;AVGPOST=0.9941;RSQ=0.9588;ERATE=0.0004;THETA=0.0031;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 69889624 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.792;LDAF=0.0304;AVGPOST=0.9868;RSQ=0.8380;ERATE=0.0020;THETA=0.0085;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69889702 . CGG C 229 PASS INDEL;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0026;AVGPOST=0.9964;RSQ=0.4207;ERATE=0.0005;THETA=0.0027;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69889802 . TG T 65 PASS INDEL;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0061;AVGPOST=0.9904;RSQ=0.3240;ERATE=0.0022;THETA=0.0223;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69889924 . TTTGA T 241 PASS INDEL;BAVGPOST=0.997;BRSQ=0.636;LDAF=0.0060;AVGPOST=0.9926;RSQ=0.5010;ERATE=0.0012;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69890661 . AAGTG A 17 PASS INDEL;BAVGPOST=0.998;BRSQ=0.420;LDAF=0.0025;AVGPOST=0.9962;RSQ=0.3370;ERATE=0.0008;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69892078 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.7547;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69892214 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.534;LDAF=0.0198;AVGPOST=0.9793;RSQ=0.6459;ERATE=0.0013;THETA=0.0011;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69892240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.941;BRSQ=0.897;LDAF=0.6623;AVGPOST=0.8998;RSQ=0.8432;ERATE=0.0155;THETA=0.0006;AC=1482;AN=2184 GT:DS:GL:BD 0.67857140 1 1 69892249 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.866;LDAF=0.9686;AVGPOST=0.9807;RSQ=0.7626;ERATE=0.0022;THETA=0.0005;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 69892347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.0181;AVGPOST=0.9958;RSQ=0.9083;ERATE=0.0004;THETA=0.0004;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69892516 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.824;LDAF=0.0188;AVGPOST=0.9941;RSQ=0.8569;ERATE=0.0006;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69892555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.939;LDAF=0.1407;AVGPOST=0.9888;RSQ=0.9661;ERATE=0.0005;THETA=0.0005;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 69892586 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.930;LDAF=0.2744;AVGPOST=0.9709;RSQ=0.9474;ERATE=0.0017;THETA=0.0014;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 69892588 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4520;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69892592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.868;LDAF=0.7780;AVGPOST=0.9268;RSQ=0.8478;ERATE=0.0128;THETA=0.0003;AC=1724;AN=2184 GT:DS:GL:BD 0.78937727 1 1 69892618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0097;AVGPOST=0.9978;RSQ=0.9088;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69892677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1495;AVGPOST=0.9995;RSQ=0.9982;ERATE=0.0003;THETA=0.0004;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 69892866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.5862;AVGPOST=0.9942;RSQ=0.9908;ERATE=0.0015;THETA=0.0004;AC=1281;AN=2184 GT:DS:GL:BD 0.58653843 1 1 69893060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9627;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69893108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0017;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69893202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8469;ERATE=0.0002;THETA=0.0031;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69893216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7376;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69893243 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.5799;AVGPOST=0.9899;RSQ=0.9838;ERATE=0.0014;THETA=0.0003;AC=1271;AN=2184 GT:DS:GL:BD 0.58195972 1 1 69893283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.6870;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69893284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69893291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6091;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69893396 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7684;ERATE=0.0004;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69893413 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.972;LDAF=0.5827;AVGPOST=0.9885;RSQ=0.9822;ERATE=0.0012;THETA=0.0002;AC=1276;AN=2184 GT:DS:GL:BD 0.58424908 1 1 69893434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.967;LDAF=0.5787;AVGPOST=0.9897;RSQ=0.9845;ERATE=0.0007;THETA=0.0004;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 69893466 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6442;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69893543 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8894;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69893635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6344;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69893755 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.728;LDAF=0.0038;AVGPOST=0.9968;RSQ=0.7145;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69893757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69893868 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.7784;ERATE=0.0004;THETA=0.0020;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69894071 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9786;AVGPOST=0.9990;RSQ=0.9804;ERATE=0.0004;THETA=0.0002;AC=2138;AN=2184 GT:DS:GL:BD 0.97893775 1 1 69894136 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1196;AVGPOST=0.9989;RSQ=0.9952;ERATE=0.0005;THETA=0.0004;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 69894138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5893;AVGPOST=0.9952;RSQ=0.9921;ERATE=0.0012;THETA=0.0004;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 69894191 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3690;AVGPOST=0.9955;RSQ=0.9922;ERATE=0.0006;THETA=0.0006;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 69894204 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0040;AVGPOST=0.9945;RSQ=0.4676;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69894260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6530;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69894338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5613;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69894377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9731;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69894492 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7967;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69894542 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69894547 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9990;RSQ=0.4266;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69894548 . CTT C 20 PASS INDEL;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5746;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69894609 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69894647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0065;AVGPOST=0.9991;RSQ=0.9579;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69894978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0539;AVGPOST=0.9980;RSQ=0.9860;ERATE=0.0004;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 69895000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5710;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69895004 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6328;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69895076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9514;ERATE=0.0002;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69895098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9995;RSQ=0.9826;ERATE=0.0002;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69895206 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69895238 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0093;AVGPOST=0.9977;RSQ=0.9095;ERATE=0.0005;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69895261 rs5777632 TGA T 63513 PASS INDEL;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.5869;AVGPOST=0.9903;RSQ=0.9846;ERATE=0.0014;THETA=0.0004;AC=1281;AN=2184 GT:DS:GL:BD 0.58653843 1 1 69895347 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0027;AVGPOST=0.9996;RSQ=0.9402;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69895380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5961;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69895405 . CT C 16 PASS INDEL;BAVGPOST=0.993;BRSQ=0.645;LDAF=0.0100;AVGPOST=0.9931;RSQ=0.7317;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69895417 . T TAATA 75 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.5247;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69895593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9534;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69895674 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0677;AVGPOST=0.9987;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 69895759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5689;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69895849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5858;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69895865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4386;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69895871 . T TATA 146 PASS INDEL;BAVGPOST=1.000;BRSQ=0.701;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5291;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69895889 rs112012954 AT A 21808 PASS INDEL;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.2172;AVGPOST=0.9873;RSQ=0.9731;ERATE=0.0020;THETA=0.0004;AC=473;AN=2184 GT:DS:GL:BD 0.21657509 0 1 69896040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8511;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69896260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6790;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69896273 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1995;AVGPOST=0.9957;RSQ=0.9907;ERATE=0.0006;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 69896290 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9668;ERATE=0.0002;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69896369 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69896385 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8517;AVGPOST=0.9995;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=1860;AN=2184 GT:DS:GL:BD 0.85164833 1 1 69896544 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9636;ERATE=0.0002;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69896561 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6798;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69896599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8724;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69896618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5891;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0006;THETA=0.0003;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 69896643 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4691;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69896801 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5891;AVGPOST=0.9980;RSQ=0.9964;ERATE=0.0006;THETA=0.0004;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 69896858 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69896888 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.3588;AVGPOST=0.9978;RSQ=0.9958;ERATE=0.0005;THETA=0.0005;AC=784;AN=2184 GT:DS:GL:BD 0.35897437 0 1 69896979 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.3467;AVGPOST=0.9949;RSQ=0.9914;ERATE=0.0009;THETA=0.0005;AC=754;AN=2184 GT:DS:GL:BD 0.34523809 0 1 69897016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1192;AVGPOST=0.9994;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 69897018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1504;AVGPOST=0.9977;RSQ=0.9928;ERATE=0.0006;THETA=0.0003;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 69897205 . G GT 488 PASS INDEL;BAVGPOST=0.949;BRSQ=0.684;LDAF=0.0944;AVGPOST=0.9394;RSQ=0.7430;ERATE=0.0009;THETA=0.0096;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 69903485 . T TC 122 PASS INDEL;BAVGPOST=0.990;BRSQ=0.499;LDAF=0.0105;AVGPOST=0.9887;RSQ=0.5453;ERATE=0.0010;THETA=0.0085;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69903486 rs71270994 T TG 2381 PASS INDEL;BAVGPOST=0.949;BRSQ=0.701;LDAF=0.1043;AVGPOST=0.9359;RSQ=0.7448;ERATE=0.0026;THETA=0.0081;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 69903487 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.531;LDAF=0.1171;AVGPOST=0.9015;RSQ=0.5637;ERATE=0.0224;THETA=0.0210;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 69903575 . CTGGGACT C 1557 PASS INDEL;BAVGPOST=0.960;BRSQ=0.401;LDAF=0.0516;AVGPOST=0.9276;RSQ=0.3495;ERATE=0.0093;THETA=0.0157;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69903808 . GC G 1092 PASS INDEL;BAVGPOST=0.874;BRSQ=0.393;LDAF=0.1228;AVGPOST=0.8835;RSQ=0.5070;ERATE=0.0050;THETA=0.0276;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 69904635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.879;BRSQ=0.508;LDAF=0.1706;AVGPOST=0.8686;RSQ=0.5689;ERATE=0.0176;THETA=0.0126;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 69905312 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.656;BRSQ=0.243;LDAF=0.4516;AVGPOST=0.7461;RSQ=0.3945;ERATE=0.0136;THETA=0.0334;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 69905397 . CG C 600 PASS INDEL;BAVGPOST=0.977;BRSQ=0.421;LDAF=0.0240;AVGPOST=0.9698;RSQ=0.4229;ERATE=0.0034;THETA=0.0030;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69905635 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.635;BRSQ=0.265;LDAF=0.4705;AVGPOST=0.7359;RSQ=0.4208;ERATE=0.0025;THETA=0.0135;AC=946;AN=2184 GT:DS:GL:BD 0.43315017 0 1 69905645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.745;BRSQ=0.323;LDAF=0.2543;AVGPOST=0.7711;RSQ=0.4427;ERATE=0.0030;THETA=0.0278;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 69905658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.940;BRSQ=0.370;LDAF=0.0553;AVGPOST=0.9314;RSQ=0.4170;ERATE=0.0070;THETA=0.0056;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 69905677 . G GA 181 PASS INDEL;BAVGPOST=0.963;BRSQ=0.362;LDAF=0.0265;AVGPOST=0.9679;RSQ=0.4426;ERATE=0.0013;THETA=0.0096;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69905683 . G GA 687 PASS INDEL;BAVGPOST=0.925;BRSQ=0.356;LDAF=0.0749;AVGPOST=0.9043;RSQ=0.3890;ERATE=0.0078;THETA=0.0318;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69905688 . CGG C 409 PASS INDEL;BAVGPOST=0.930;BRSQ=0.225;LDAF=0.0732;AVGPOST=0.8809;RSQ=0.2195;ERATE=0.0111;THETA=0.0595;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69905737 . AC A 170 PASS INDEL;BAVGPOST=0.856;BRSQ=0.138;LDAF=0.1327;AVGPOST=0.7852;RSQ=0.1875;ERATE=0.0148;THETA=0.0126;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69905748 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.787;BRSQ=0.286;LDAF=0.2124;AVGPOST=0.7652;RSQ=0.3762;ERATE=0.0160;THETA=0.0172;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 69905791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.694;BRSQ=0.227;LDAF=0.6786;AVGPOST=0.7083;RSQ=0.3754;ERATE=0.0230;THETA=0.0214;AC=1676;AN=2184 GT:DS:GL:BD 0.76739925 1 1 69905927 . C CG 385 PASS INDEL;BAVGPOST=0.921;BRSQ=0.303;LDAF=0.0860;AVGPOST=0.8765;RSQ=0.3037;ERATE=0.0141;THETA=0.0173;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 69905972 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.747;BRSQ=0.263;LDAF=0.7617;AVGPOST=0.7569;RSQ=0.3965;ERATE=0.0168;THETA=0.0315;AC=1858;AN=2184 GT:DS:GL:BD 0.85073262 1 1 69905983 . CG C 745 PASS INDEL;BAVGPOST=0.911;BRSQ=0.371;LDAF=0.0871;AVGPOST=0.9008;RSQ=0.4371;ERATE=0.0078;THETA=0.0262;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 69906043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.806;BRSQ=0.365;LDAF=0.7647;AVGPOST=0.7984;RSQ=0.4670;ERATE=0.0243;THETA=0.0177;AC=1824;AN=2184 GT:DS:GL:BD 0.83516484 1 1 69906098 rs71083878 G GCAA 614 PASS INDEL;BAVGPOST=0.871;BRSQ=0.213;LDAF=0.1115;AVGPOST=0.8327;RSQ=0.2650;ERATE=0.0120;THETA=0.0191;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69906193 . CGGCGATG C 1913 PASS INDEL;BAVGPOST=0.855;BRSQ=0.237;LDAF=0.1502;AVGPOST=0.7811;RSQ=0.2537;ERATE=0.0192;THETA=0.0098;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 69906204 . G GA 184 PASS INDEL;BAVGPOST=0.938;BRSQ=0.188;LDAF=0.0381;AVGPOST=0.9419;RSQ=0.3010;ERATE=0.0023;THETA=0.0121;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69906232 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.877;BRSQ=0.461;LDAF=0.1482;AVGPOST=0.8677;RSQ=0.5322;ERATE=0.0179;THETA=0.0176;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 69906276 . C CG 852 PASS INDEL;BAVGPOST=0.704;BRSQ=0.160;LDAF=0.2172;AVGPOST=0.7055;RSQ=0.2708;ERATE=0.0082;THETA=0.0397;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 69906306 . CA C 428 PASS INDEL;BAVGPOST=0.557;BRSQ=0.154;LDAF=0.2980;AVGPOST=0.6446;RSQ=0.3078;ERATE=0.0056;THETA=0.0112;AC=312;AN=2184 GT:DS:GL:BD 0.14285715 0 1 69906308 . GA G 1373 PASS INDEL;BAVGPOST=0.510;BRSQ=0.186;LDAF=0.3572;AVGPOST=0.6112;RSQ=0.2909;ERATE=0.0063;THETA=0.0301;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 69906315 . AC A 246 PASS INDEL;BAVGPOST=0.759;BRSQ=0.139;LDAF=0.1556;AVGPOST=0.7654;RSQ=0.2391;ERATE=0.0047;THETA=0.0077;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 69906316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.516;BRSQ=0.108;LDAF=0.3535;AVGPOST=0.6192;RSQ=0.2517;ERATE=0.0241;THETA=0.0078;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 69906337 . G GGCAGA 1782 PASS INDEL;BAVGPOST=0.804;BRSQ=0.170;LDAF=0.1636;AVGPOST=0.7572;RSQ=0.2378;ERATE=0.0145;THETA=0.0090;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 69906341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.826;BRSQ=0.245;LDAF=0.1321;AVGPOST=0.8242;RSQ=0.3253;ERATE=0.0104;THETA=0.0263;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 69906349 . C CA 699 PASS INDEL;BAVGPOST=0.876;BRSQ=0.214;LDAF=0.1098;AVGPOST=0.8363;RSQ=0.2713;ERATE=0.0101;THETA=0.0242;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69906371 . G GGA 232 PASS INDEL;BAVGPOST=0.946;BRSQ=0.194;LDAF=0.0584;AVGPOST=0.9036;RSQ=0.2202;ERATE=0.0101;THETA=0.0131;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69906374 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.820;BRSQ=0.269;LDAF=0.1661;AVGPOST=0.7866;RSQ=0.3260;ERATE=0.0121;THETA=0.0094;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 69906380 . GC G 126 PASS INDEL;BAVGPOST=0.869;BRSQ=0.114;LDAF=0.1139;AVGPOST=0.8090;RSQ=0.1800;ERATE=0.0124;THETA=0.0217;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69906434 . T TC 530 PASS INDEL;BAVGPOST=0.841;BRSQ=0.144;LDAF=0.1180;AVGPOST=0.8118;RSQ=0.2188;ERATE=0.0113;THETA=0.0215;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69906442 . GA G 17 PASS INDEL;BAVGPOST=0.888;BRSQ=0.063;LDAF=0.1295;AVGPOST=0.7709;RSQ=0.1111;ERATE=0.0115;THETA=0.0331;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69906482 . G GT 381 PASS INDEL;BAVGPOST=0.834;BRSQ=0.163;LDAF=0.1378;AVGPOST=0.7879;RSQ=0.2131;ERATE=0.0153;THETA=0.0137;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 69906504 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.795;BRSQ=0.233;LDAF=0.1801;AVGPOST=0.7633;RSQ=0.3057;ERATE=0.0193;THETA=0.0290;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 69906528 . G GGT 152 PASS INDEL;BAVGPOST=0.941;BRSQ=0.186;LDAF=0.0413;AVGPOST=0.9369;RSQ=0.3028;ERATE=0.0026;THETA=0.0207;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69906540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.540;BRSQ=0.181;LDAF=0.4207;AVGPOST=0.6538;RSQ=0.2979;ERATE=0.0137;THETA=0.0146;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 69906543 . A AG 266 PASS INDEL;BAVGPOST=0.920;BRSQ=0.179;LDAF=0.0617;AVGPOST=0.9052;RSQ=0.2756;ERATE=0.0058;THETA=0.0171;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69906545 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.889;BRSQ=0.370;LDAF=0.1107;AVGPOST=0.8707;RSQ=0.4065;ERATE=0.0111;THETA=0.0244;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 69906557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.843;BRSQ=0.362;LDAF=0.1648;AVGPOST=0.8293;RSQ=0.4209;ERATE=0.0142;THETA=0.0301;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 69906561 rs59107880 CG C 1782 PASS INDEL;BAVGPOST=0.324;BRSQ=0.109;LDAF=0.4960;AVGPOST=0.5712;RSQ=0.2559;ERATE=0.0034;THETA=0.0048;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 69906682 . GC G 1654 PASS INDEL;BAVGPOST=0.392;BRSQ=0.183;LDAF=0.4408;AVGPOST=0.5877;RSQ=0.2802;ERATE=0.0073;THETA=0.0123;AC=746;AN=2184 GT:DS:GL:BD 0.34157509 0 1 69906690 rs60730801 CGGG C 4345 PASS INDEL;BAVGPOST=0.490;BRSQ=0.158;LDAF=0.3426;AVGPOST=0.6181;RSQ=0.2793;ERATE=0.0133;THETA=0.0318;AC=427;AN=2184 GT:DS:GL:BD 0.19551282 0 1 69906691 . G GC 303 PASS INDEL;BAVGPOST=0.867;BRSQ=0.151;LDAF=0.1015;AVGPOST=0.8393;RSQ=0.2269;ERATE=0.0099;THETA=0.0232;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69906712 rs59501589 CGGCGGT C 244 PASS INDEL;BAVGPOST=0.882;BRSQ=0.158;LDAF=0.1038;AVGPOST=0.8312;RSQ=0.2047;ERATE=0.0113;THETA=0.0226;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69906731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.833;BRSQ=0.468;LDAF=0.2810;AVGPOST=0.8418;RSQ=0.5811;ERATE=0.0158;THETA=0.0125;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 69906967 . G GA 44 PASS INDEL;BAVGPOST=0.997;BRSQ=0.520;LDAF=0.0031;AVGPOST=0.9969;RSQ=0.5807;ERATE=0.0008;THETA=0.0207;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69907988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0249;AVGPOST=0.9981;RSQ=0.9677;ERATE=0.0006;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 69908045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.489;LDAF=0.0050;AVGPOST=0.9922;RSQ=0.4421;ERATE=0.0015;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69908167 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0002;THETA=0.0014;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69908313 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9551;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69908466 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6626;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69908531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5064;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69908748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69908763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.897;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8517;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69908829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8579;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69908833 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8405;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69909314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69909446 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0003;THETA=0.0081;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69909478 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69909646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0092;AVGPOST=0.9988;RSQ=0.9564;ERATE=0.0005;THETA=0.0016;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69909698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0241;AVGPOST=0.9990;RSQ=0.9836;ERATE=0.0003;THETA=0.0011;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 69909737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.8232;ERATE=0.0002;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69909785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4591;ERATE=0.0005;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69909868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7809;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69910131 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8476;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69910137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0129;AVGPOST=0.9993;RSQ=0.9745;ERATE=0.0003;THETA=0.0017;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69910190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69910463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0184;AVGPOST=0.9999;RSQ=0.9969;ERATE=0.0002;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69910615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0247;AVGPOST=0.9999;RSQ=0.9974;ERATE=0.0002;THETA=0.0005;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69910708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69910831 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69910865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0002;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69910933 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69911003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0146;AVGPOST=0.9994;RSQ=0.9859;ERATE=0.0003;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 69911082 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9593;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69911159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69911270 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9318;ERATE=0.0003;THETA=0.0027;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69911318 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69911443 . G GGGCA 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7577;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69911639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69911728 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.590;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7418;ERATE=0.0002;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69911846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69911923 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7460;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69911994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.852;LDAF=0.0170;AVGPOST=0.9937;RSQ=0.8619;ERATE=0.0006;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69912014 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4815;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69912248 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.1579;AVGPOST=0.9932;RSQ=0.9814;ERATE=0.0003;THETA=0.0005;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 69912276 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69912349 . AAC A 70 PASS INDEL;BAVGPOST=0.992;BRSQ=0.643;LDAF=0.0176;AVGPOST=0.9815;RSQ=0.5836;ERATE=0.0033;THETA=0.0015;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69912387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912675 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0002;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69912821 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912848 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69912925 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69912945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69913014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6042;AVGPOST=0.9956;RSQ=0.9929;ERATE=0.0007;THETA=0.0004;AC=1320;AN=2184 GT:DS:GL:BD 0.60439563 1 1 69913225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69913360 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6223;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69913499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6026;AVGPOST=0.9931;RSQ=0.9893;ERATE=0.0012;THETA=0.0006;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 69913683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4672;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69913772 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0063;AVGPOST=0.9989;RSQ=0.9318;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69913864 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69913878 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69913885 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6599;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69913962 . AG A 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69914198 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6843;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69914306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69914361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.872;LDAF=0.1033;AVGPOST=0.9722;RSQ=0.8787;ERATE=0.0007;THETA=0.0006;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69914537 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.0255;AVGPOST=0.9971;RSQ=0.9518;ERATE=0.0004;THETA=0.0005;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 69914567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7192;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69914817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0037;AVGPOST=0.9982;RSQ=0.8094;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69914825 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5446;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69914983 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9223;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69915126 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0259;AVGPOST=0.9994;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 69915129 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6983;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69915173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0068;AVGPOST=0.9996;RSQ=0.9744;ERATE=0.0003;THETA=0.0028;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69915380 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8300;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69915469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69915780 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69915781 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.874;LDAF=0.0117;AVGPOST=0.9923;RSQ=0.7607;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69915881 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.444;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.3950;ERATE=0.0008;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69915904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.614;LDAF=0.0055;AVGPOST=0.9943;RSQ=0.5852;ERATE=0.0010;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69915920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0042;AVGPOST=0.9949;RSQ=0.5687;ERATE=0.0005;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69916113 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0057;AVGPOST=0.9966;RSQ=0.7607;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69916187 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.856;LDAF=0.0116;AVGPOST=0.9930;RSQ=0.7946;ERATE=0.0006;THETA=0.0009;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69916188 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.661;LDAF=0.0298;AVGPOST=0.9778;RSQ=0.7220;ERATE=0.0011;THETA=0.0010;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69916201 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0036;AVGPOST=0.9936;RSQ=0.2705;ERATE=0.0011;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69916249 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.427;LDAF=0.0042;AVGPOST=0.9943;RSQ=0.4531;ERATE=0.0010;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69916263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.935;LDAF=0.0255;AVGPOST=0.9943;RSQ=0.9087;ERATE=0.0005;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69916304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.933;LDAF=0.0271;AVGPOST=0.9965;RSQ=0.9434;ERATE=0.0006;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 69916309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8210;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69916442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69916742 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4757;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69916845 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69917005 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0123;AVGPOST=0.9981;RSQ=0.9424;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69917019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5976;AVGPOST=0.9931;RSQ=0.9885;ERATE=0.0004;THETA=0.0005;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 69917043 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5742;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69917234 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.5905;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69917269 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1247;AVGPOST=0.9979;RSQ=0.9917;ERATE=0.0003;THETA=0.0015;AC=272;AN=2184 GT:DS:GL:BD 0.12454212 0 1 69917457 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0068;AVGPOST=0.9975;RSQ=0.8653;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69917479 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0242;AVGPOST=0.9988;RSQ=0.9762;ERATE=0.0005;THETA=0.0008;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69917815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.806;LDAF=0.0475;AVGPOST=0.9836;RSQ=0.8746;ERATE=0.0004;THETA=0.0006;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 69917834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0027;AVGPOST=0.9979;RSQ=0.6920;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69917907 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0026;AVGPOST=0.9960;RSQ=0.4062;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69917916 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.944;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9340;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69918087 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0031;AVGPOST=0.9980;RSQ=0.7252;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69918090 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0036;AVGPOST=0.9988;RSQ=0.8425;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69918111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5965;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69918273 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3527;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=771;AN=2184 GT:DS:GL:BD 0.35302198 0 1 69918277 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4965;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69918488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7577;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69918762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0005;AVGPOST=0.9992;RSQ=0.4149;ERATE=0.0003;THETA=0.0021;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69918791 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6447;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69918804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69918854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69918873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7202;ERATE=0.0006;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69918874 . AC A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5077;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69919038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0076;AVGPOST=0.9992;RSQ=0.9508;ERATE=0.0005;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69919067 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69919203 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69919268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3621;AVGPOST=0.9993;RSQ=0.9986;ERATE=0.0004;THETA=0.0004;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 69919304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69919371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5967;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69919601 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6689;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69919611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0073;AVGPOST=0.9998;RSQ=0.9862;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69919713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7574;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69919795 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8681;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69919809 . AGG A 56 PASS INDEL;BAVGPOST=0.997;BRSQ=0.721;LDAF=0.0053;AVGPOST=0.9949;RSQ=0.6259;ERATE=0.0014;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69919831 . C CT 134 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69919839 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0194;AVGPOST=0.9948;RSQ=0.9048;ERATE=0.0003;THETA=0.0003;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 69919937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7608;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69920037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9285;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69920350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0532;AVGPOST=0.9979;RSQ=0.9853;ERATE=0.0005;THETA=0.0011;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 69920410 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4200;AVGPOST=0.9972;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 69920558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3508;AVGPOST=0.9922;RSQ=0.9874;ERATE=0.0014;THETA=0.0005;AC=764;AN=2184 GT:DS:GL:BD 0.34981686 0 1 69920730 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0038;AVGPOST=0.9985;RSQ=0.8241;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69920757 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9800;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69920760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5187;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69920840 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9403;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69920858 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69920873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0090;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69920876 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0368;AVGPOST=0.9968;RSQ=0.9636;ERATE=0.0003;THETA=0.0005;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 69920949 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9584;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69921126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6529;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69921163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7391;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69921184 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0171;AVGPOST=0.9972;RSQ=0.9378;ERATE=0.0004;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69921249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3884;AVGPOST=0.9975;RSQ=0.9958;ERATE=0.0006;THETA=0.0017;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 69921262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7627;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69921271 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9076;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69921273 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0135;AVGPOST=0.9994;RSQ=0.9772;ERATE=0.0003;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69921332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69921381 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69921693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69921732 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7110;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69921917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.7070;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69921957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69921970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69922013 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.767;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6514;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69922147 . C CTTTTA 1165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9659;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69922285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2453;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 69922310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3677;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0003;THETA=0.0008;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 69922340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8845;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69922414 . C CT 388 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0076;AVGPOST=0.9989;RSQ=0.9438;ERATE=0.0004;THETA=0.0010;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69922507 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69922661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0132;AVGPOST=0.9992;RSQ=0.9725;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69922687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69922883 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2447;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0004;THETA=0.0005;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 69922903 . CTGTA C 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69922930 . GATT G 197 PASS INDEL;BAVGPOST=0.989;BRSQ=0.650;LDAF=0.0390;AVGPOST=0.9510;RSQ=0.4702;ERATE=0.0109;THETA=0.0006;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69922989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9272;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69922996 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6697;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69923007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2364;AVGPOST=0.9970;RSQ=0.9941;ERATE=0.0007;THETA=0.0004;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 69923123 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9142;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69923175 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6127;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923573 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69923616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7822;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69923641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69923700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923729 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0123;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69923741 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69923752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69923798 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923799 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69923819 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69923864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0092;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0013;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69923893 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0045;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69923914 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6326;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0004;AC=1382;AN=2184 GT:DS:GL:BD 0.63278389 1 1 69923938 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69924028 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0214;AVGPOST=0.9991;RSQ=0.9833;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69924227 . AC A 30 PASS INDEL;BAVGPOST=0.999;BRSQ=0.704;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7135;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69924254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9864;ERATE=0.0004;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69924336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8387;AVGPOST=0.9987;RSQ=0.9959;ERATE=0.0005;THETA=0.0007;AC=1834;AN=2184 GT:DS:GL:BD 0.83974361 1 1 69924345 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.890;LDAF=0.0315;AVGPOST=0.9899;RSQ=0.8630;ERATE=0.0005;THETA=0.0006;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69924454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8188;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69924524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1402;AVGPOST=0.9981;RSQ=0.9947;ERATE=0.0004;THETA=0.0006;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 69924836 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69924846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1422;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0004;THETA=0.0007;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 69924868 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9587;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69924938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.6330;AVGPOST=0.9978;RSQ=0.9956;ERATE=0.0006;THETA=0.0017;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 69924983 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0077;AVGPOST=0.9978;RSQ=0.8813;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69925263 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9996;RSQ=0.9851;ERATE=0.0004;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69925314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69925482 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8398;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0003;THETA=0.0009;AC=1835;AN=2184 GT:DS:GL:BD 0.84020144 1 1 69925508 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69925544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0134;AVGPOST=0.9980;RSQ=0.9345;ERATE=0.0004;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69925750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6610;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69925905 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8956;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69925910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9987;RSQ=0.8445;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69925963 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69925987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8381;AVGPOST=0.9976;RSQ=0.9937;ERATE=0.0006;THETA=0.0007;AC=1833;AN=2184 GT:DS:GL:BD 0.83928573 1 1 69925988 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69926031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8084;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69926139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5489;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69926223 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0074;AVGPOST=0.9956;RSQ=0.7701;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69926227 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926275 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0134;AVGPOST=0.9995;RSQ=0.9817;ERATE=0.0005;THETA=0.0006;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69926299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926376 rs34281878 G GA 13413 PASS INDEL;BAVGPOST=0.875;BRSQ=0.573;LDAF=0.8009;AVGPOST=0.8184;RSQ=0.5374;ERATE=0.0242;THETA=0.0008;AC=1842;AN=2184 GT:DS:GL:BD 0.84340662 1 1 69926454 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0012;AVGPOST=0.9982;RSQ=0.3446;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926507 . G GA 41 PASS INDEL;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0026;AVGPOST=0.9972;RSQ=0.5301;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69926515 . AG A 54 PASS INDEL;BAVGPOST=0.936;BRSQ=0.098;LDAF=0.0424;AVGPOST=0.9437;RSQ=0.4737;ERATE=0.0024;THETA=0.0010;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 69926518 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4340;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926536 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6715;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69926547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69926757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8893;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69926761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5750;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69927005 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0085;AVGPOST=0.9995;RSQ=0.9744;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69927141 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6915;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69927208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4608;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69927287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0057;AVGPOST=0.9980;RSQ=0.8643;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69927309 . T TA 25 PASS INDEL;BAVGPOST=0.993;BRSQ=0.597;LDAF=0.0154;AVGPOST=0.9804;RSQ=0.4754;ERATE=0.0050;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69927401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.883;LDAF=0.0243;AVGPOST=0.9909;RSQ=0.8523;ERATE=0.0008;THETA=0.0005;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69927487 . C CAA 34 PASS INDEL;BAVGPOST=0.993;BRSQ=0.194;LDAF=0.0254;AVGPOST=0.9568;RSQ=0.3127;ERATE=0.0021;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69927544 rs67186435 CG C 7269 PASS INDEL;BAVGPOST=0.924;BRSQ=0.786;LDAF=0.7081;AVGPOST=0.7678;RSQ=0.5517;ERATE=0.0239;THETA=0.0002;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 69927546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.889;LDAF=0.0580;AVGPOST=0.9535;RSQ=0.6961;ERATE=0.0008;THETA=0.0007;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 69927551 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69927849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69927888 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69927889 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8251;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69928011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5474;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 69928122 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9287;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0008;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 69928188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69928321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69928328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69928375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69928574 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8103;AVGPOST=0.9999;RSQ=0.9997;ERATE=0.0003;THETA=0.0025;AC=1770;AN=2184 GT:DS:GL:BD 0.81043959 1 1 69928593 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.512;LDAF=0.0053;AVGPOST=0.9920;RSQ=0.4133;ERATE=0.0009;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69928900 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.897;LDAF=0.7606;AVGPOST=0.8887;RSQ=0.7795;ERATE=0.0064;THETA=0.0006;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 69929019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.972;LDAF=0.5571;AVGPOST=0.9694;RSQ=0.9589;ERATE=0.0023;THETA=0.0006;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 69929337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.974;LDAF=0.5513;AVGPOST=0.9728;RSQ=0.9651;ERATE=0.0010;THETA=0.0004;AC=1198;AN=2184 GT:DS:GL:BD 0.54853481 1 1 69929362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.908;LDAF=0.0484;AVGPOST=0.9672;RSQ=0.7510;ERATE=0.0020;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69929463 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.959;LDAF=0.6300;AVGPOST=0.9899;RSQ=0.9834;ERATE=0.0007;THETA=0.0005;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 69929792 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.956;LDAF=0.6226;AVGPOST=0.9856;RSQ=0.9765;ERATE=0.0011;THETA=0.0003;AC=1363;AN=2184 GT:DS:GL:BD 0.62408423 1 1 69929793 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.384;LDAF=0.0209;AVGPOST=0.9690;RSQ=0.4229;ERATE=0.0029;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69929794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0074;AVGPOST=0.9915;RSQ=0.5446;ERATE=0.0015;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69929927 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0032;AVGPOST=0.9971;RSQ=0.5917;ERATE=0.0008;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69930103 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0125;AVGPOST=0.9859;RSQ=0.5478;ERATE=0.0011;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69930132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.446;LDAF=0.0047;AVGPOST=0.9937;RSQ=0.4906;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69930292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8745;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69930614 . CG C 1364 PASS INDEL;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0118;AVGPOST=0.9989;RSQ=0.9539;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69930697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7736;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69930703 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69930731 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69930760 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6801;ERATE=0.0004;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69930790 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9319;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69930962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.901;LDAF=0.0075;AVGPOST=0.9995;RSQ=0.9715;ERATE=0.0003;THETA=0.0018;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69930984 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7431;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69930985 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69931040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69931069 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8103;AVGPOST=0.9987;RSQ=0.9965;ERATE=0.0004;THETA=0.0002;AC=1771;AN=2184 GT:DS:GL:BD 0.81089741 1 1 69931531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69931587 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5758;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69931595 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69931666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.985;LDAF=0.8091;AVGPOST=0.9954;RSQ=0.9887;ERATE=0.0010;THETA=0.0004;AC=1771;AN=2184 GT:DS:GL:BD 0.81089741 1 1 69931725 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.5509;AVGPOST=0.9929;RSQ=0.9906;ERATE=0.0007;THETA=0.0012;AC=1207;AN=2184 GT:DS:GL:BD 0.55265570 1 1 69931902 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4868;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69931934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0025;AVGPOST=0.9969;RSQ=0.5506;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69931940 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8169;AVGPOST=0.9979;RSQ=0.9951;ERATE=0.0005;THETA=0.0007;AC=1784;AN=2184 GT:DS:GL:BD 0.81684983 1 1 69932047 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69932162 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69932305 . GAA G 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69932493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69932520 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0108;AVGPOST=0.9989;RSQ=0.9556;ERATE=0.0004;THETA=0.0017;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69932576 rs35579149 C CA 63333 PASS INDEL;BAVGPOST=0.983;BRSQ=0.972;LDAF=0.5459;AVGPOST=0.9933;RSQ=0.9909;ERATE=0.0004;THETA=0.0005;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 69932725 . A AC 18300 PASS INDEL;BAVGPOST=0.977;BRSQ=0.963;LDAF=0.5368;AVGPOST=0.9767;RSQ=0.9698;ERATE=0.0032;THETA=0.0007;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 69932726 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8113;AVGPOST=0.9984;RSQ=0.9961;ERATE=0.0004;THETA=0.0007;AC=1772;AN=2184 GT:DS:GL:BD 0.81135529 1 1 69932754 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69932757 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7955;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69932950 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9627;ERATE=0.0004;THETA=0.0016;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69933041 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.570;LDAF=0.0080;AVGPOST=0.9892;RSQ=0.5381;ERATE=0.0005;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69933156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0225;AVGPOST=0.9968;RSQ=0.9425;ERATE=0.0006;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69933215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.440;LDAF=0.0075;AVGPOST=0.9932;RSQ=0.6230;ERATE=0.0014;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69933244 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.468;LDAF=0.0059;AVGPOST=0.9930;RSQ=0.5501;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69933310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.943;LDAF=0.0167;AVGPOST=0.9985;RSQ=0.9671;ERATE=0.0004;THETA=0.0008;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69933391 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.0586;ERATE=0.0003;THETA=0.0009;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69933554 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.901;LDAF=0.0223;AVGPOST=0.9937;RSQ=0.9024;ERATE=0.0010;THETA=0.0010;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69933590 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69933846 . G GA 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5274;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69933942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6174;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69934096 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69934212 . A ATTCAC 795 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5380;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69934382 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5655;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69934579 . CTG C 161 PASS INDEL;BAVGPOST=0.988;BRSQ=0.651;LDAF=0.0260;AVGPOST=0.9722;RSQ=0.5646;ERATE=0.0108;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 69934601 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4317;AVGPOST=0.9954;RSQ=0.9932;ERATE=0.0005;THETA=0.0009;AC=942;AN=2184 GT:DS:GL:BD 0.43131867 0 1 69934708 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.9047;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69934710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9373;ERATE=0.0003;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69934863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5754;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69934896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.1122;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69935056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5301;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69935268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.818;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8609;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69935349 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69935388 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8829;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69935653 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5614;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69935759 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0398;AVGPOST=0.9967;RSQ=0.9709;ERATE=0.0004;THETA=0.0008;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 69935830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0160;AVGPOST=0.9999;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69935930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69936031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.6606;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69936056 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0207;AVGPOST=0.9997;RSQ=0.9935;ERATE=0.0004;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69936172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0026;AVGPOST=0.9983;RSQ=0.7294;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69936270 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.978;LDAF=0.0251;AVGPOST=0.9977;RSQ=0.9634;ERATE=0.0004;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69936380 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0003;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69936463 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.533;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5532;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69936486 . A AT 34 PASS INDEL;BAVGPOST=0.995;BRSQ=0.482;LDAF=0.0110;AVGPOST=0.9845;RSQ=0.4558;ERATE=0.0025;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69936488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.707;LDAF=0.0066;AVGPOST=0.9979;RSQ=0.8631;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69936593 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0020;AVGPOST=0.9982;RSQ=0.6351;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69936604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0053;AVGPOST=0.9968;RSQ=0.7707;ERATE=0.0004;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69936639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.826;LDAF=0.0097;AVGPOST=0.9977;RSQ=0.9015;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69936646 . C CA 126 PASS INDEL;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6409;ERATE=0.0006;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69936787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69936862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8951;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69936963 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0138;AVGPOST=0.9998;RSQ=0.9943;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69936970 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3750;AVGPOST=0.9966;RSQ=0.9955;ERATE=0.0004;THETA=0.0006;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 69936990 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.947;LDAF=0.0387;AVGPOST=0.9956;RSQ=0.9545;ERATE=0.0003;THETA=0.0010;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 69937004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.664;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.5942;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69937118 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4718;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69937167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9182;ERATE=0.0004;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69937730 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9655;ERATE=0.0004;THETA=0.0100;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69937942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5281;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69938225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69938270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69938278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8202;ERATE=0.0004;THETA=0.0023;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69938408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69938410 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0029;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69938434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0084;AVGPOST=0.9992;RSQ=0.9566;ERATE=0.0004;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69938483 . TTTCC T 2010 PASS INDEL;BAVGPOST=0.994;BRSQ=0.809;LDAF=0.0181;AVGPOST=0.9959;RSQ=0.9072;ERATE=0.0004;THETA=0.0017;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69938632 rs71975598 TCCTC T 69870 PASS INDEL;BAVGPOST=0.988;BRSQ=0.981;LDAF=0.7750;AVGPOST=0.9803;RSQ=0.9698;ERATE=0.0017;THETA=0.0096;AC=1695;AN=2184 GT:DS:GL:BD 0.77609891 1 1 69938654 . ACT A 710 PASS INDEL;BAVGPOST=0.969;BRSQ=0.829;LDAF=0.0877;AVGPOST=0.9882;RSQ=0.9507;ERATE=0.0004;THETA=0.0041;AC=197;AN=2184 GT:DS:GL:BD 0.09020147 0 1 69938671 rs111700246 CTCTT C 11841 PASS INDEL;BAVGPOST=0.978;BRSQ=0.895;LDAF=0.1002;AVGPOST=0.9842;RSQ=0.9415;ERATE=0.0016;THETA=0.0071;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 69938672 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.546;LDAF=0.0381;AVGPOST=0.9592;RSQ=0.5698;ERATE=0.0068;THETA=0.0031;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69938689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.898;BRSQ=0.715;LDAF=0.6639;AVGPOST=0.8840;RSQ=0.7515;ERATE=0.0072;THETA=0.0018;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 69938693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5142;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69938695 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.894;BRSQ=0.758;LDAF=0.5947;AVGPOST=0.8884;RSQ=0.7949;ERATE=0.0064;THETA=0.0017;AC=1343;AN=2184 GT:DS:GL:BD 0.61492676 1 1 69938697 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.931;BRSQ=0.611;LDAF=0.1158;AVGPOST=0.9064;RSQ=0.6224;ERATE=0.0248;THETA=0.0029;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 69938717 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.895;BRSQ=0.575;LDAF=0.1588;AVGPOST=0.8712;RSQ=0.5841;ERATE=0.0248;THETA=0.0022;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 69938765 . C CT 77 PASS INDEL;BAVGPOST=0.957;BRSQ=0.229;LDAF=0.0948;AVGPOST=0.8719;RSQ=0.4126;ERATE=0.0108;THETA=0.0093;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 69938778 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0025;AVGPOST=0.9979;RSQ=0.6775;ERATE=0.0004;THETA=0.0021;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69938792 . CT C 1150 PASS INDEL;BAVGPOST=0.994;BRSQ=0.867;LDAF=0.0218;AVGPOST=0.9939;RSQ=0.8937;ERATE=0.0011;THETA=0.0012;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69938794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.691;LDAF=0.0077;AVGPOST=0.9942;RSQ=0.6854;ERATE=0.0008;THETA=0.0094;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69938897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9071;ERATE=0.0004;THETA=0.0066;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69938955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69939051 . ATT A 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4194;ERATE=0.0005;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69939065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69939135 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0050;AVGPOST=0.9988;RSQ=0.8976;ERATE=0.0004;THETA=0.0023;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69939232 . AC A 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69939260 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0076;AVGPOST=0.9989;RSQ=0.9346;ERATE=0.0003;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69939263 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.9372;AVGPOST=0.9924;RSQ=0.9549;ERATE=0.0009;THETA=0.0067;AC=2052;AN=2184 GT:DS:GL:BD 0.93956041 1 1 69939374 . AG A 474 PASS INDEL;BAVGPOST=0.871;BRSQ=0.299;LDAF=0.1396;AVGPOST=0.8188;RSQ=0.3857;ERATE=0.0201;THETA=0.0013;AC=148;AN=2184 GT:DS:GL:BD 0.06776557 0 1 69939450 . AG A 196 PASS INDEL;BAVGPOST=0.941;BRSQ=0.303;LDAF=0.0316;AVGPOST=0.9564;RSQ=0.4332;ERATE=0.0020;THETA=0.0007;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 69939460 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.965;LDAF=0.0570;AVGPOST=0.9976;RSQ=0.9840;ERATE=0.0004;THETA=0.0016;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 69939538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9341;ERATE=0.0005;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69939616 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0073;AVGPOST=0.9996;RSQ=0.9779;ERATE=0.0003;THETA=0.0011;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69939645 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0462;AVGPOST=0.9993;RSQ=0.9935;ERATE=0.0004;THETA=0.0020;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 69939657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0471;AVGPOST=0.9979;RSQ=0.9832;ERATE=0.0006;THETA=0.0030;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 69939725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.592;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7617;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69939755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.861;LDAF=0.0077;AVGPOST=0.9979;RSQ=0.8926;ERATE=0.0005;THETA=0.0020;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69939771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.0554;AVGPOST=0.9914;RSQ=0.9482;ERATE=0.0015;THETA=0.0063;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 69939865 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0229;AVGPOST=0.9950;RSQ=0.9279;ERATE=0.0006;THETA=0.0074;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69939875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0004;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69939968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.917;LDAF=0.0101;AVGPOST=0.9990;RSQ=0.9604;ERATE=0.0004;THETA=0.0108;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69939969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5887;ERATE=0.0005;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69939973 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.9407;AVGPOST=0.9970;RSQ=0.9801;ERATE=0.0004;THETA=0.0085;AC=2054;AN=2184 GT:DS:GL:BD 0.94047618 1 1 69939989 . ACTCT A 887 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.0069;AVGPOST=0.9978;RSQ=0.8612;ERATE=0.0004;THETA=0.0048;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69940098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.945;LDAF=0.0719;AVGPOST=0.9901;RSQ=0.9508;ERATE=0.0004;THETA=0.0070;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 69940116 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7617;ERATE=0.0005;THETA=0.0140;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69940164 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7460;ERATE=0.0007;THETA=0.0035;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69940358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7581;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69940408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.912;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9571;ERATE=0.0005;THETA=0.0057;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69940455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9070;ERATE=0.0005;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69940470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.700;LDAF=0.0075;AVGPOST=0.9961;RSQ=0.8137;ERATE=0.0009;THETA=0.0048;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69940471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5764;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69940505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0029;AVGPOST=0.9982;RSQ=0.7572;ERATE=0.0004;THETA=0.0098;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69940641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0044;AVGPOST=0.9971;RSQ=0.7074;ERATE=0.0008;THETA=0.0018;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69940721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.913;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.8910;ERATE=0.0004;THETA=0.0085;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69940772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69940922 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.958;LDAF=0.2933;AVGPOST=0.9809;RSQ=0.9657;ERATE=0.0007;THETA=0.0033;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 69940924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69940947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.774;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8553;ERATE=0.0004;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69941015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69941017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.8974;ERATE=0.0004;THETA=0.0078;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69941061 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.5525;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0059;AVGPOST=0.9980;RSQ=0.8778;ERATE=0.0004;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69941166 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.636;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6773;ERATE=0.0004;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941315 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69941348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4320;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69941395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.969;LDAF=0.2800;AVGPOST=0.9827;RSQ=0.9681;ERATE=0.0005;THETA=0.0007;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 69941456 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0154;AVGPOST=0.9993;RSQ=0.9769;ERATE=0.0005;THETA=0.0015;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69941462 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0044;AVGPOST=0.9977;RSQ=0.7781;ERATE=0.0004;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69941487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0121;AVGPOST=0.9994;RSQ=0.9764;ERATE=0.0004;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69941542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9894;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69941667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0161;AVGPOST=0.9998;RSQ=0.9947;ERATE=0.0003;THETA=0.0010;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69941681 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69941725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6802;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941746 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7836;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0107;AVGPOST=0.9991;RSQ=0.9685;ERATE=0.0004;THETA=0.0069;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69941874 . GC G 270 PASS INDEL;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69941910 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.841;LDAF=0.0028;AVGPOST=0.9994;RSQ=0.9148;ERATE=0.0003;THETA=0.0030;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69942080 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0012;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69942291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0107;AVGPOST=0.9996;RSQ=0.9873;ERATE=0.0003;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69942333 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69942396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69942429 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0013;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69942602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69942627 . A AG 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69942669 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8794;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69942715 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8400;ERATE=0.0004;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69942900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8323;ERATE=0.0004;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69942920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7928;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69942937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0183;AVGPOST=0.9985;RSQ=0.9652;ERATE=0.0004;THETA=0.0012;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 69942938 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69943063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0014;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69943486 . G GA 58 PASS INDEL;BAVGPOST=0.994;BRSQ=0.702;LDAF=0.0130;AVGPOST=0.9851;RSQ=0.5199;ERATE=0.0046;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69943498 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69943554 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69943569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0320;AVGPOST=1.0000;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69943686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6767;ERATE=0.0011;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69943854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69944016 . ATC A 376 PASS INDEL;BAVGPOST=0.965;BRSQ=0.499;LDAF=0.0854;AVGPOST=0.8956;RSQ=0.4780;ERATE=0.0121;THETA=0.0005;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 69944297 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0109;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0015;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69944299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1754;AVGPOST=0.9978;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=384;AN=2184 GT:DS:GL:BD 0.17582418 0 1 69944302 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69944364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69944427 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69944452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0034;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69944511 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69944639 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0007;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69944649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9558;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69944665 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69944669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69944706 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69944713 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1838;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0007;AC=401;AN=2184 GT:DS:GL:BD 0.18360806 0 1 69944878 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1769;AVGPOST=0.9998;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 69944958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8480;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69945002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5685;AVGPOST=0.9970;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 69945266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0004;THETA=0.0028;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69945302 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9033;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69945345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0031;AVGPOST=0.9999;RSQ=0.9798;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69945374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69945469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69945561 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945662 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69945705 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945770 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945796 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69945812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69945835 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0007;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69945849 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69945856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69945870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69945904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69945933 . CTT C 338 PASS INDEL;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69945984 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946193 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69946269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946289 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946306 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946315 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69946379 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69946410 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69946433 . GC G 758 PASS INDEL;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0069;AVGPOST=0.9993;RSQ=0.9553;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69946462 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0183;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69946504 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0238;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69946816 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0215;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69946818 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69946841 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5117;AVGPOST=0.9995;RSQ=0.9995;ERATE=0.0003;THETA=0.0006;AC=1118;AN=2184 GT:DS:GL:BD 0.51190478 1 1 69947012 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69947041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1730;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0003;THETA=0.0005;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 69947049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69947081 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69947159 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5664;AVGPOST=0.9968;RSQ=0.9955;ERATE=0.0008;THETA=0.0003;AC=1240;AN=2184 GT:DS:GL:BD 0.56776559 1 1 69947323 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0567;AVGPOST=0.9998;RSQ=0.9982;ERATE=0.0003;THETA=0.0001;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 69947371 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69947477 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9600;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69947610 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.5557;AVGPOST=0.9995;RSQ=0.9992;ERATE=0.0004;THETA=0.0005;AC=1215;AN=2184 GT:DS:GL:BD 0.55631870 1 1 69947615 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69947733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69947758 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4995;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0004;AC=1092;AN=2184 GT:DS:GL:BD 0.50000000 0 1 69947900 . A AAC 78 PASS INDEL;BAVGPOST=0.940;BRSQ=0.193;LDAF=0.1652;AVGPOST=0.7860;RSQ=0.4033;ERATE=0.0218;THETA=0.0002;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 69947929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69948056 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8272;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69948252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0330;AVGPOST=0.9989;RSQ=0.9872;ERATE=0.0003;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 69948260 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0018;AVGPOST=0.9995;RSQ=0.8934;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69948262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.805;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69948270 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0633;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0005;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69948282 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1114;AVGPOST=0.9967;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 69948292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.932;LDAF=0.0545;AVGPOST=0.9941;RSQ=0.9598;ERATE=0.0004;THETA=0.0004;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 69948326 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69948484 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0633;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69948628 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0633;AVGPOST=0.9996;RSQ=0.9978;ERATE=0.0003;THETA=0.0006;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69948635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9703;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69948650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0330;AVGPOST=0.9987;RSQ=0.9848;ERATE=0.0004;THETA=0.0001;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 69948715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6491;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69948968 . CAT C 32 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5648;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69948999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7831;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69949093 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.761;LDAF=0.0021;AVGPOST=0.9979;RSQ=0.6608;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69949132 . CTT C 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5338;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69949208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5979;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69949349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0303;AVGPOST=0.9992;RSQ=0.9894;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69949355 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9801;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69949399 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69949409 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7033;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69949415 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9960;ERATE=0.0003;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69949461 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2297;AVGPOST=0.9969;RSQ=0.9934;ERATE=0.0005;THETA=0.0003;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 69949517 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9763;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69949648 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0648;AVGPOST=0.9979;RSQ=0.9872;ERATE=0.0006;THETA=0.0003;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 69949722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69949780 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0637;AVGPOST=0.9984;RSQ=0.9915;ERATE=0.0004;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69949823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0050;AVGPOST=0.9984;RSQ=0.8802;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69949844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0624;AVGPOST=0.9967;RSQ=0.9798;ERATE=0.0006;THETA=0.0002;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69949889 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.966;LDAF=0.2488;AVGPOST=0.9935;RSQ=0.9877;ERATE=0.0005;THETA=0.0006;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 69949899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.981;LDAF=0.1041;AVGPOST=0.9973;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=227;AN=2184 GT:DS:GL:BD 0.10393773 0 1 69949991 . G GA 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6582;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69949993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950052 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69950092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2175;AVGPOST=1.0000;RSQ=0.9999;ERATE=0.0003;THETA=0.0019;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 69950186 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950238 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950241 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9883;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69950283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69950290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950296 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69950299 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69950341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69950348 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0329;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 69950371 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950372 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950399 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69950439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69950443 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=1.0000;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69950460 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950493 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69950501 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950542 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950637 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0631;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69950655 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69950708 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1293;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0002;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 69950729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950798 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0333;AVGPOST=0.9999;RSQ=0.9989;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 69950918 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0123;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69950944 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0640;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0003;THETA=0.0005;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 69950950 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69950994 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69950997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951012 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 69951036 . GC G 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5922;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69951139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.8496;ERATE=0.0004;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69951153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8090;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951205 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0635;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69951213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951299 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0007;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69951304 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0750;AVGPOST=0.9987;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 69951370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0269;AVGPOST=0.9990;RSQ=0.9877;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69951371 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0786;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0003;THETA=0.0012;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69951382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69951392 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9849;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69951425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1312;AVGPOST=0.9998;RSQ=0.9991;ERATE=0.0003;THETA=0.0007;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 69951529 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9685;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69951544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5414;AVGPOST=0.9934;RSQ=0.9898;ERATE=0.0006;THETA=0.0020;AC=1183;AN=2184 GT:DS:GL:BD 0.54166669 1 1 69951562 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69951724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.697;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6228;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951801 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5667;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951843 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0026;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69951944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0319;AVGPOST=0.9995;RSQ=0.9929;ERATE=0.0003;THETA=0.0009;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 69952031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7345;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69952032 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69952035 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.785;LDAF=0.0043;AVGPOST=0.9965;RSQ=0.7066;ERATE=0.0006;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69952053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.1305;AVGPOST=0.9962;RSQ=0.9875;ERATE=0.0005;THETA=0.0018;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 69952235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7618;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69952236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7397;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69952309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0777;AVGPOST=0.9992;RSQ=0.9960;ERATE=0.0003;THETA=0.0003;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 69952395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69952419 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0777;AVGPOST=0.9989;RSQ=0.9949;ERATE=0.0003;THETA=0.0007;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 69952452 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.8962;ERATE=0.0005;THETA=0.0024;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69952554 MERGED_DEL_2_5987 CCCTAACATGTATTATCTCATTTATCATTAACAATTCTATTTAATAAATATGAACTTCTTTTTACATGAGAAACATGGTACACAGAGCTGCAATAACTAGTCCAAGTACACAGAGATAATTATTATGAATCTAAGGCAGAAATTCATTATGTCTGGTTCCAGATCCATGTCTTTATTGACCATGATCTCA C . . SV;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1300;AVGPOST=0.9982;RSQ=0.9931;ERATE=0.0004;THETA=0.0012;CIEND=0;0;CIPOS=0;0;END=158728009;HOMLEN=27;HOMSEQ=CCTAACATGTATTATCTCATTTATCAT;SOURCE=AssembledBr GT:DS:GL:BD 0.12957875 0 1 69952574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.965;LDAF=0.4986;AVGPOST=0.9688;RSQ=0.9600;ERATE=0.0034;THETA=0.0209;AC=1095;AN=2184 GT:DS:GL:BD 0.50137365 1 1 69952602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0106;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69952676 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0226;AVGPOST=0.9972;RSQ=0.9532;ERATE=0.0003;THETA=0.0083;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69952737 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0003;THETA=0.0262;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69952825 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0038;AVGPOST=0.9952;RSQ=0.5921;ERATE=0.0003;THETA=0.0072;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69952828 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0120;AVGPOST=0.9974;RSQ=0.9265;ERATE=0.0004;THETA=0.0075;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69952833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5023;ERATE=0.0005;THETA=0.0123;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69952859 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4613;ERATE=0.0006;THETA=0.0248;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0158;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5223;ERATE=0.0005;THETA=0.0174;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953045 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6723;ERATE=0.0004;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.909;BRSQ=0.867;LDAF=0.5569;AVGPOST=0.9063;RSQ=0.8798;ERATE=0.0359;THETA=0.0411;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 69953243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2316;AVGPOST=0.9988;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 69953359 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7651;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953360 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6996;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953431 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0490;AVGPOST=0.9990;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 69953469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5873;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69953487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0267;AVGPOST=0.9997;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69953538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0178;AVGPOST=0.9984;RSQ=0.9659;ERATE=0.0002;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69953546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69953581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953599 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69953664 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0207;AVGPOST=0.9979;RSQ=0.9656;ERATE=0.0002;THETA=0.0010;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69953693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6866;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69953694 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2337;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0004;THETA=0.0009;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 69953727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2337;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0003;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 69953862 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69953887 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9833;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69953925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9997;RSQ=0.8887;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69954130 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2377;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 69954326 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0017;AVGPOST=0.9997;RSQ=0.9311;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69954358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0002;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69954362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0237;AVGPOST=1.0000;RSQ=0.9991;ERATE=0.0002;THETA=0.0023;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69954403 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69954429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69954522 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69954538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69954562 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1202;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0002;THETA=0.0005;AC=263;AN=2184 GT:DS:GL:BD 0.12042125 0 1 69954590 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0072;AVGPOST=0.9989;RSQ=0.9598;ERATE=0.0002;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69954664 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2375;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 69954737 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0107;AVGPOST=0.9989;RSQ=0.9660;ERATE=0.0002;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69954792 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69954848 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69954850 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69954895 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0033;AVGPOST=0.9996;RSQ=0.9427;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69954916 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.2372;AVGPOST=0.9997;RSQ=0.9992;ERATE=0.0003;THETA=0.0004;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 69955011 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2373;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0002;THETA=0.0005;AC=518;AN=2184 GT:DS:GL:BD 0.23717949 0 1 69955029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69955094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955274 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0787;AVGPOST=0.9999;RSQ=0.9995;ERATE=0.0002;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 69955319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0768;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0002;THETA=0.0005;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 69955338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0983;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0012;THETA=0.0006;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69955352 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0050;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69955353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69955501 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1532;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0004;THETA=0.0005;AC=335;AN=2184 GT:DS:GL:BD 0.15338828 0 1 69955535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9999;RSQ=0.9913;ERATE=0.0002;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69955539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7927;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69955678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0209;AVGPOST=0.9983;RSQ=0.9608;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69955681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1793;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 69955717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955719 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69955744 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6176;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69955878 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8112;ERATE=0.0005;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69956003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9548;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69956026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.7175;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69956043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0008;AVGPOST=0.9999;RSQ=0.9255;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69956063 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2588;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0006;THETA=0.0004;AC=565;AN=2184 GT:DS:GL:BD 0.25869963 0 1 69956074 . AT A 546 PASS INDEL;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0100;AVGPOST=0.9989;RSQ=0.9511;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69956081 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0048;AVGPOST=0.9996;RSQ=0.9763;ERATE=0.0002;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69956106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956269 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8025;AVGPOST=0.9992;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1754;AN=2184 GT:DS:GL:BD 0.80311358 1 1 69956462 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0019;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69956481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1760;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 69956548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0768;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 69956591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2546;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0002;AC=556;AN=2184 GT:DS:GL:BD 0.25457877 0 1 69956603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=1.0000;RSQ=0.9879;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69956605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69956625 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0790;AVGPOST=1.0000;RSQ=0.9997;ERATE=0.0002;THETA=0.0004;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69956655 . AC A 89 PASS INDEL;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7783;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69956659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956684 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0790;AVGPOST=0.9999;RSQ=0.9994;ERATE=0.0002;THETA=0.0009;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 69956696 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69956852 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6115;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69956961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9997;RSQ=0.9751;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69956998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69957081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0787;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0003;THETA=0.0004;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 69957099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69957132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7770;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69957153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69957241 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0040;AVGPOST=0.9970;RSQ=0.6886;ERATE=0.0019;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69957252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0787;AVGPOST=0.9994;RSQ=0.9960;ERATE=0.0003;THETA=0.0005;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 69957284 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0058;AVGPOST=0.9987;RSQ=0.8958;ERATE=0.0005;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69957366 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.525;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4279;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69957387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0845;AVGPOST=0.9971;RSQ=0.9845;ERATE=0.0008;THETA=0.0003;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 69957706 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.876;LDAF=0.0226;AVGPOST=0.9938;RSQ=0.8935;ERATE=0.0004;THETA=0.0004;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69957725 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0035;AVGPOST=0.9967;RSQ=0.6322;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69957794 . T TA 51 PASS INDEL;BAVGPOST=0.989;BRSQ=0.506;LDAF=0.0264;AVGPOST=0.9638;RSQ=0.4455;ERATE=0.0062;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 69957821 rs60099724 A AAAT 442 PASS INDEL;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0069;AVGPOST=0.9970;RSQ=0.7994;ERATE=0.0007;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69957829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.930;LDAF=0.0714;AVGPOST=0.9919;RSQ=0.9577;ERATE=0.0004;THETA=0.0003;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 69957903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.928;LDAF=0.0723;AVGPOST=0.9914;RSQ=0.9572;ERATE=0.0005;THETA=0.0003;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 69957904 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9990;RSQ=0.9294;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69957951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69958199 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3704;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69958238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69958300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0868;AVGPOST=0.9973;RSQ=0.9875;ERATE=0.0005;THETA=0.0006;AC=188;AN=2184 GT:DS:GL:BD 0.08608059 0 1 69958304 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5770;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69958324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9996;RSQ=0.9594;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69958375 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9727;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69958377 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5968;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=1305;AN=2184 GT:DS:GL:BD 0.59752744 1 1 69958434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0473;AVGPOST=0.9995;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 69958530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69958569 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0082;AVGPOST=1.0000;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69958639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.5883;AVGPOST=0.9984;RSQ=0.9969;ERATE=0.0006;THETA=0.0004;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 69958642 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0052;AVGPOST=0.9970;RSQ=0.7862;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69958650 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0229;AVGPOST=0.9996;RSQ=0.9925;ERATE=0.0004;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 69958743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0059;AVGPOST=0.9982;RSQ=0.8719;ERATE=0.0004;THETA=0.0015;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69958769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.754;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5783;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69958819 . G GTC 24888 PASS INDEL;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5883;AVGPOST=0.9964;RSQ=0.9943;ERATE=0.0004;THETA=0.0005;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 69958873 rs4017449 C CTT 108417 PASS INDEL;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5889;AVGPOST=0.9961;RSQ=0.9940;ERATE=0.0007;THETA=0.0004;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 69958875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0228;AVGPOST=0.9989;RSQ=0.9791;ERATE=0.0005;THETA=0.0007;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 69959082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8534;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69959098 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.6713;AVGPOST=0.9988;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=1468;AN=2184 GT:DS:GL:BD 0.67216116 1 1 69959231 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5966;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0007;THETA=0.0005;AC=1304;AN=2184 GT:DS:GL:BD 0.59706962 1 1 69959290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8167;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69959367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9552;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69959379 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8794;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69959435 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5524;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69959492 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.978;LDAF=0.5947;AVGPOST=0.9920;RSQ=0.9858;ERATE=0.0012;THETA=0.0008;AC=1303;AN=2184 GT:DS:GL:BD 0.59661174 1 1 69959596 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0044;AVGPOST=0.9966;RSQ=0.6814;ERATE=0.0007;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69959722 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.4791;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69959752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.975;LDAF=0.5940;AVGPOST=0.9934;RSQ=0.9896;ERATE=0.0005;THETA=0.0008;AC=1303;AN=2184 GT:DS:GL:BD 0.59661174 1 1 69959768 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7076;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69959772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.976;LDAF=0.5864;AVGPOST=0.9942;RSQ=0.9898;ERATE=0.0008;THETA=0.0004;AC=1287;AN=2184 GT:DS:GL:BD 0.58928573 1 1 69959774 . A AT 151 PASS INDEL;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8017;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69959993 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9983;RSQ=0.9186;ERATE=0.0005;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69960149 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0034;AVGPOST=0.9960;RSQ=0.5374;ERATE=0.0012;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69960162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0052;AVGPOST=0.9963;RSQ=0.7130;ERATE=0.0007;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69960240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5960;AVGPOST=0.9970;RSQ=0.9947;ERATE=0.0007;THETA=0.0003;AC=1305;AN=2184 GT:DS:GL:BD 0.59752744 1 1 69960276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69960475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8969;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69960492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0090;AVGPOST=0.9990;RSQ=0.9591;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69960543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6208;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69960589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5033;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69960632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69960642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7393;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69960644 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5905;AVGPOST=0.9922;RSQ=0.9876;ERATE=0.0020;THETA=0.0003;AC=1288;AN=2184 GT:DS:GL:BD 0.58974361 1 1 69960670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6659;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69960789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5881;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0007;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 69960847 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5959;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0010;THETA=0.0004;AC=1305;AN=2184 GT:DS:GL:BD 0.59752744 1 1 69960896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0081;AVGPOST=0.9995;RSQ=0.9803;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69961040 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69961063 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0471;AVGPOST=0.9996;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 69961066 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0049;AVGPOST=0.9994;RSQ=0.9514;ERATE=0.0003;THETA=0.0025;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69961072 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6882;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69961304 . A AT 1811 PASS INDEL;BAVGPOST=0.977;BRSQ=0.732;LDAF=0.0595;AVGPOST=0.9490;RSQ=0.6328;ERATE=0.0106;THETA=0.0005;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 69961372 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9048;ERATE=0.0005;THETA=0.0026;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69961417 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0137;AVGPOST=0.9961;RSQ=0.8896;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69961455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0069;AVGPOST=0.9968;RSQ=0.8211;ERATE=0.0006;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69961511 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.558;LDAF=0.0014;AVGPOST=0.9977;RSQ=0.2611;ERATE=0.0008;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69961515 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0061;AVGPOST=0.9985;RSQ=0.9060;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69961519 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.603;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6327;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69961523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0061;AVGPOST=0.9974;RSQ=0.8310;ERATE=0.0005;THETA=0.0047;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69961551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0295;AVGPOST=0.9968;RSQ=0.9553;ERATE=0.0004;THETA=0.0006;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69961553 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.547;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4001;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69961585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.982;LDAF=0.0463;AVGPOST=0.9965;RSQ=0.9679;ERATE=0.0005;THETA=0.0013;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 69961607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0543;AVGPOST=0.9976;RSQ=0.9800;ERATE=0.0003;THETA=0.0009;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 69961636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.979;LDAF=0.5697;AVGPOST=0.9790;RSQ=0.9661;ERATE=0.0095;THETA=0.0026;AC=1246;AN=2184 GT:DS:GL:BD 0.57051283 1 1 69961640 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0004;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69961649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.591;LDAF=0.0055;AVGPOST=0.9932;RSQ=0.5110;ERATE=0.0031;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69961739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0437;AVGPOST=0.9967;RSQ=0.9700;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 69961787 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2374;AVGPOST=0.9937;RSQ=0.9862;ERATE=0.0004;THETA=0.0004;AC=514;AN=2184 GT:DS:GL:BD 0.23534799 0 1 69961852 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6150;AVGPOST=0.9941;RSQ=0.9902;ERATE=0.0007;THETA=0.0013;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 69961863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69961879 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8713;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69961894 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69961957 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.9989;AVGPOST=0.9994;RSQ=0.7277;ERATE=0.0004;THETA=0.0005;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 69961969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5973;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0004;THETA=0.0005;AC=1306;AN=2184 GT:DS:GL:BD 0.59798533 1 1 69961993 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9373;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69962041 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7270;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69962067 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0042;AVGPOST=0.9997;RSQ=0.9639;ERATE=0.0003;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69962109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6059;AVGPOST=0.9978;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1326;AN=2184 GT:DS:GL:BD 0.60714287 1 1 69962147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6504;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69962185 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0076;AVGPOST=0.9991;RSQ=0.9592;ERATE=0.0003;THETA=0.0018;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69962261 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.7122;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69962285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69962424 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6087;AVGPOST=0.9997;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=1331;AN=2184 GT:DS:GL:BD 0.60943222 1 1 69962435 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69962446 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69962479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69962489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69962549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69962589 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69962609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69962613 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69962646 . TC T 94 PASS INDEL;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0018;AVGPOST=0.9988;RSQ=0.7283;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69962884 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69962892 MERGED_DEL_2_6031 A ADELA . . SV;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6083;ERATE=0.0005;THETA=0.0003;CIEND=-17;33;CIPOS=-18;19;END=160851398;SOURCE=GenomeStrip_160846829_160851398;SVTYPE=DEL;AC=1;AN GT:DS:GL:BD 0.00045788 0 1 69962980 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7359;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69963018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6004;AVGPOST=0.9976;RSQ=0.9966;ERATE=0.0006;THETA=0.0003;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 69963085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5809;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69963146 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0086;AVGPOST=0.9983;RSQ=0.9270;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69963201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6009;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0005;THETA=0.0005;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 69963215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69963253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7647;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69963276 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5566;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69963464 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1782;AVGPOST=0.9969;RSQ=0.9931;ERATE=0.0005;THETA=0.0003;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 69963538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0125;AVGPOST=0.9985;RSQ=0.9453;ERATE=0.0004;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69963620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8174;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69963681 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4966;AVGPOST=0.9981;RSQ=0.9978;ERATE=0.0005;THETA=0.0006;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 69963931 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4964;AVGPOST=0.9975;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 69963979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69964102 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8203;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69964162 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69964286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69964311 . TTC T 147 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6758;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69964338 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7920;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69964343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69964617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8559;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69964757 . T TC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0033;AVGPOST=0.9978;RSQ=0.7187;ERATE=0.0006;THETA=0.0025;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69964808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8063;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69964823 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69964890 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9258;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69965004 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7573;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69965046 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9523;ERATE=0.0003;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69965188 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69965194 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3096;AVGPOST=0.9985;RSQ=0.9982;ERATE=0.0003;THETA=0.0011;AC=677;AN=2184 GT:DS:GL:BD 0.30998167 0 1 69965239 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69965303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.939;LDAF=0.0088;AVGPOST=0.9973;RSQ=0.9050;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69965369 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69965401 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69965658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6283;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69965888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.9577;AVGPOST=0.9987;RSQ=0.9879;ERATE=0.0004;THETA=0.0018;AC=2093;AN=2184 GT:DS:GL:BD 0.95833331 1 1 69965897 . GAGT G 389 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7859;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69966263 . AG A 46 PASS INDEL;BAVGPOST=0.988;BRSQ=0.067;LDAF=0.0211;AVGPOST=0.9717;RSQ=0.5066;ERATE=0.0013;THETA=0.0016;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69966360 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0121;AVGPOST=0.9991;RSQ=0.9641;ERATE=0.0005;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69966497 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2930;AVGPOST=0.9971;RSQ=0.9960;ERATE=0.0004;THETA=0.0008;AC=641;AN=2184 GT:DS:GL:BD 0.29349816 0 1 69966639 . AT A 690 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8794;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69966685 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0084;AVGPOST=0.9990;RSQ=0.9502;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69966691 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0144;AVGPOST=0.9989;RSQ=0.9703;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 69966810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.690;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6547;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69966833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9160;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69966965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69966978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9342;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69967250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.964;LDAF=0.0085;AVGPOST=0.9983;RSQ=0.9209;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69967309 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0004;THETA=0.0012;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69967344 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8083;ERATE=0.0004;THETA=0.0044;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69967361 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0038;AVGPOST=0.9987;RSQ=0.8470;ERATE=0.0008;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69967365 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8831;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69967372 . G GT 113 PASS INDEL;BAVGPOST=0.989;BRSQ=0.547;LDAF=0.0143;AVGPOST=0.9876;RSQ=0.6558;ERATE=0.0020;THETA=0.0019;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69967413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0034;AVGPOST=0.9984;RSQ=0.8041;ERATE=0.0004;THETA=0.0020;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69967490 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.865;LDAF=0.0139;AVGPOST=0.9954;RSQ=0.8831;ERATE=0.0008;THETA=0.0011;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69967508 . AC A 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5007;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69967602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.823;LDAF=0.0132;AVGPOST=0.9917;RSQ=0.7491;ERATE=0.0006;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69967675 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.981;LDAF=0.9606;AVGPOST=0.9970;RSQ=0.9693;ERATE=0.0006;THETA=0.0023;AC=2100;AN=2184 GT:DS:GL:BD 0.96153843 1 1 69967701 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69967837 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69967915 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.782;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8151;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69967993 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69968062 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0036;AVGPOST=0.9975;RSQ=0.7413;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69968100 . CAT C 473 PASS INDEL;BAVGPOST=0.998;BRSQ=0.830;LDAF=0.0067;AVGPOST=0.9970;RSQ=0.8431;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69968214 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9232;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69968310 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6437;ERATE=0.0004;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69968373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.974;LDAF=0.1235;AVGPOST=0.9912;RSQ=0.9756;ERATE=0.0012;THETA=0.0018;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 69968386 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7786;ERATE=0.0010;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69968424 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69968449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69968482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.879;LDAF=0.0083;AVGPOST=0.9977;RSQ=0.8841;ERATE=0.0010;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69968535 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69968545 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69968587 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69968613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69968702 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6451;ERATE=0.0003;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69968834 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8765;ERATE=0.0004;THETA=0.0011;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 69968946 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0218;AVGPOST=0.9992;RSQ=0.9843;ERATE=0.0004;THETA=0.0022;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69969007 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.799;LDAF=0.0033;AVGPOST=0.9956;RSQ=0.4663;ERATE=0.0012;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69969071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0088;AVGPOST=0.9979;RSQ=0.9086;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69969079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0057;AVGPOST=0.9985;RSQ=0.8948;ERATE=0.0007;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69969082 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69969145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0248;AVGPOST=0.9996;RSQ=0.9929;ERATE=0.0003;THETA=0.0017;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69969184 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69969196 . AT A 251 PASS INDEL;BAVGPOST=0.998;BRSQ=0.536;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6188;ERATE=0.0007;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69969281 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0042;AVGPOST=0.9988;RSQ=0.8852;ERATE=0.0004;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69969398 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8600;ERATE=0.0004;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69969445 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.5277;ERATE=0.0004;THETA=0.0028;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69969453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8558;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69969626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69969737 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.509;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3790;ERATE=0.0007;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69969806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0246;AVGPOST=0.9981;RSQ=0.9652;ERATE=0.0003;THETA=0.0005;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 69969814 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0253;AVGPOST=0.9986;RSQ=0.9751;ERATE=0.0005;THETA=0.0010;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 69969815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69969918 . AC A 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4647;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69970010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.823;LDAF=0.0076;AVGPOST=0.9968;RSQ=0.8437;ERATE=0.0003;THETA=0.0008;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69970233 . T TG 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69970242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0467;AVGPOST=0.9985;RSQ=0.9881;ERATE=0.0003;THETA=0.0020;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 69970304 . TATTA T 173 PASS INDEL;BAVGPOST=0.990;BRSQ=0.208;LDAF=0.0935;AVGPOST=0.8497;RSQ=0.3049;ERATE=0.0082;THETA=0.0003;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 69970327 . AT A 2559 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0222;AVGPOST=0.9981;RSQ=0.9705;ERATE=0.0004;THETA=0.0008;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69970335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0467;AVGPOST=0.9989;RSQ=0.9904;ERATE=0.0004;THETA=0.0015;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 69970499 . T TAA 779 PASS INDEL;BAVGPOST=0.998;BRSQ=0.746;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.7962;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69970536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69970568 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69970602 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0044;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69970641 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69971020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7570;ERATE=0.0004;THETA=0.0078;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69971100 . C CAT 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4452;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971166 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7523;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69971192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6250;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.932;LDAF=0.0241;AVGPOST=0.9931;RSQ=0.8748;ERATE=0.0008;THETA=0.0044;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69971310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4991;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971353 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.974;LDAF=0.0161;AVGPOST=0.9988;RSQ=0.9759;ERATE=0.0003;THETA=0.0012;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 69971363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4788;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971424 rs66867043 CAT C 145 PASS INDEL;BAVGPOST=0.996;BRSQ=0.631;LDAF=0.0050;AVGPOST=0.9951;RSQ=0.6248;ERATE=0.0006;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69971452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.580;LDAF=0.0108;AVGPOST=0.9878;RSQ=0.5573;ERATE=0.0028;THETA=0.0060;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69971472 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.817;LDAF=0.0665;AVGPOST=0.9668;RSQ=0.7931;ERATE=0.0070;THETA=0.0015;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 69971480 . GTA G 233 PASS INDEL;BAVGPOST=0.995;BRSQ=0.689;LDAF=0.0106;AVGPOST=0.9928;RSQ=0.7520;ERATE=0.0008;THETA=0.0035;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69971493 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.681;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.3541;ERATE=0.0009;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971495 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.545;LDAF=0.0370;AVGPOST=0.9584;RSQ=0.5410;ERATE=0.0096;THETA=0.0039;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69971512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.915;LDAF=0.0237;AVGPOST=0.9962;RSQ=0.9341;ERATE=0.0004;THETA=0.0037;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69971518 . ATG A 145 PASS INDEL;BAVGPOST=0.997;BRSQ=0.806;LDAF=0.0061;AVGPOST=0.9957;RSQ=0.7141;ERATE=0.0009;THETA=0.0017;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69971521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.700;LDAF=0.0689;AVGPOST=0.9432;RSQ=0.6577;ERATE=0.0073;THETA=0.0011;AC=115;AN=2184 GT:DS:GL:BD 0.05265568 0 1 69971527 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.477;LDAF=0.0141;AVGPOST=0.9832;RSQ=0.5369;ERATE=0.0017;THETA=0.0060;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69971533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0215;AVGPOST=0.9828;RSQ=0.6979;ERATE=0.0012;THETA=0.0025;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69971550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.762;BRSQ=0.422;LDAF=0.2861;AVGPOST=0.7753;RSQ=0.4979;ERATE=0.0423;THETA=0.0018;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 69971565 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.890;BRSQ=0.787;LDAF=0.7074;AVGPOST=0.8298;RSQ=0.7161;ERATE=0.0109;THETA=0.0011;AC=1629;AN=2184 GT:DS:GL:BD 0.74587911 1 1 69971566 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.497;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4070;ERATE=0.0005;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.636;LDAF=0.0678;AVGPOST=0.9455;RSQ=0.6498;ERATE=0.0067;THETA=0.0040;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 69971591 . ATG A 122 PASS INDEL;BAVGPOST=0.990;BRSQ=0.495;LDAF=0.0199;AVGPOST=0.9725;RSQ=0.4091;ERATE=0.0047;THETA=0.0068;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69971595 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.563;LDAF=0.0060;AVGPOST=0.9931;RSQ=0.5091;ERATE=0.0010;THETA=0.0050;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69971601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.768;LDAF=0.1247;AVGPOST=0.9137;RSQ=0.7137;ERATE=0.0124;THETA=0.0151;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 69971629 . ATG A 273 PASS INDEL;BAVGPOST=0.999;BRSQ=0.619;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.4947;ERATE=0.0005;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69971633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0043;AVGPOST=0.9939;RSQ=0.4319;ERATE=0.0007;THETA=0.0048;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69971636 . CAT C 934 PASS INDEL;BAVGPOST=0.878;BRSQ=0.392;LDAF=0.1207;AVGPOST=0.8718;RSQ=0.5282;ERATE=0.0033;THETA=0.0061;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 69971644 . ATG A 6185 PASS INDEL;BAVGPOST=0.835;BRSQ=0.606;LDAF=0.2158;AVGPOST=0.8485;RSQ=0.6596;ERATE=0.0027;THETA=0.0063;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 69971649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.764;LDAF=0.0083;AVGPOST=0.9927;RSQ=0.6714;ERATE=0.0007;THETA=0.0015;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69971672 rs66734014 ATG A 21770 PASS INDEL;BAVGPOST=0.880;BRSQ=0.688;LDAF=0.2519;AVGPOST=0.8446;RSQ=0.6466;ERATE=0.0336;THETA=0.0033;AC=445;AN=2184 GT:DS:GL:BD 0.20375457 0 1 69971713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.749;LDAF=0.0258;AVGPOST=0.9838;RSQ=0.7530;ERATE=0.0014;THETA=0.0005;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 69971728 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.690;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5335;ERATE=0.0004;THETA=0.0075;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69971734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.902;LDAF=0.0358;AVGPOST=0.9906;RSQ=0.9007;ERATE=0.0006;THETA=0.0090;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 69971737 . CAT C 12 PASS INDEL;BAVGPOST=0.996;BRSQ=0.170;LDAF=0.0373;AVGPOST=0.9467;RSQ=0.4086;ERATE=0.0034;THETA=0.0020;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69971740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.663;LDAF=0.0157;AVGPOST=0.9857;RSQ=0.6469;ERATE=0.0023;THETA=0.0041;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69971745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.798;LDAF=0.0125;AVGPOST=0.9877;RSQ=0.6061;ERATE=0.0030;THETA=0.0028;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69971751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.809;LDAF=0.0957;AVGPOST=0.9489;RSQ=0.7646;ERATE=0.0105;THETA=0.0038;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 69971767 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0054;AVGPOST=0.9995;RSQ=0.9623;ERATE=0.0003;THETA=0.0019;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69971792 rs67161926 GCA G 529 PASS INDEL;BAVGPOST=0.994;BRSQ=0.770;LDAF=0.0105;AVGPOST=0.9919;RSQ=0.7027;ERATE=0.0017;THETA=0.0064;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69971797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.613;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.6498;ERATE=0.0006;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69971799 . CAT C 27 PASS INDEL;BAVGPOST=0.997;BRSQ=0.713;LDAF=0.0046;AVGPOST=0.9969;RSQ=0.7283;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69971800 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971814 . ATG A 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971819 rs111837188 G GCA 1080 PASS INDEL;BAVGPOST=0.983;BRSQ=0.732;LDAF=0.0372;AVGPOST=0.9779;RSQ=0.7515;ERATE=0.0021;THETA=0.0030;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69971827 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.6043;ERATE=0.0003;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69971831 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.632;LDAF=0.0108;AVGPOST=0.9876;RSQ=0.5708;ERATE=0.0007;THETA=0.0085;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 69971833 rs5778310 A ATG 2755 PASS INDEL;BAVGPOST=0.973;BRSQ=0.776;LDAF=0.0698;AVGPOST=0.9606;RSQ=0.7543;ERATE=0.0074;THETA=0.0008;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 69971833 rs57563611 A ATG 3169 PASS INDEL;BAVGPOST=0.954;BRSQ=0.683;LDAF=0.0894;AVGPOST=0.9397;RSQ=0.6967;ERATE=0.0133;THETA=0.0019;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 69971859 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.732;LDAF=0.0086;AVGPOST=0.9911;RSQ=0.5877;ERATE=0.0009;THETA=0.0047;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69971863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4249;ERATE=0.0006;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971869 . G GCA 853 PASS INDEL;BAVGPOST=0.997;BRSQ=0.796;LDAF=0.0060;AVGPOST=0.9978;RSQ=0.8490;ERATE=0.0006;THETA=0.0043;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69971879 . ATG A 381 PASS INDEL;BAVGPOST=0.998;BRSQ=0.778;LDAF=0.0074;AVGPOST=0.9927;RSQ=0.5788;ERATE=0.0032;THETA=0.0064;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69971885 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.875;LDAF=0.0108;AVGPOST=0.9982;RSQ=0.9306;ERATE=0.0004;THETA=0.0017;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69971905 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.944;LDAF=0.0346;AVGPOST=0.9957;RSQ=0.9499;ERATE=0.0005;THETA=0.0009;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 69971907 . TAC T 28079 PASS INDEL;BAVGPOST=0.919;BRSQ=0.426;LDAF=0.8923;AVGPOST=0.8702;RSQ=0.4402;ERATE=0.0340;THETA=0.0059;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 69971918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4759;ERATE=0.0006;THETA=0.0043;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69971923 . C CAT 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7101;ERATE=0.0004;THETA=0.0048;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69971930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0103;AVGPOST=0.9991;RSQ=0.9751;ERATE=0.0003;THETA=0.0072;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69972034 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0060;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69972085 . AG A 67 PASS INDEL;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6879;ERATE=0.0005;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69972092 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69972122 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5377;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69972158 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0051;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69972184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0042;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69972278 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.926;LDAF=0.1042;AVGPOST=0.9832;RSQ=0.9359;ERATE=0.0035;THETA=0.0045;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 69972282 . TAAAG T 167 PASS INDEL;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0029;AVGPOST=0.9971;RSQ=0.5754;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69972334 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0148;AVGPOST=0.9967;RSQ=0.9101;ERATE=0.0004;THETA=0.0170;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69972370 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69972389 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0184;AVGPOST=0.9970;RSQ=0.9441;ERATE=0.0003;THETA=0.0056;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69972480 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0047;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69972632 . AAC A 5130 PASS INDEL;BAVGPOST=0.959;BRSQ=0.905;LDAF=0.2435;AVGPOST=0.9496;RSQ=0.9086;ERATE=0.0004;THETA=0.0009;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 69972658 rs67041663 AC A 21861 PASS INDEL;BAVGPOST=0.953;BRSQ=0.896;LDAF=0.2630;AVGPOST=0.9399;RSQ=0.8992;ERATE=0.0016;THETA=0.0016;AC=555;AN=2184 GT:DS:GL:BD 0.25412089 0 1 69972659 . T TA 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69972669 . T TA 237 PASS INDEL;BAVGPOST=0.990;BRSQ=0.517;LDAF=0.0167;AVGPOST=0.9768;RSQ=0.4237;ERATE=0.0053;THETA=0.0112;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69972670 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.623;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7455;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69972671 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.934;LDAF=0.0120;AVGPOST=0.9986;RSQ=0.9570;ERATE=0.0003;THETA=0.0027;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 69972702 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8919;ERATE=0.0003;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69972962 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0058;AVGPOST=0.9980;RSQ=0.8431;ERATE=0.0010;THETA=0.0049;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69973254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9692;ERATE=0.0003;THETA=0.0199;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69973306 . TAAAC T 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69973346 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5288;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69973358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8532;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69973428 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0052;AVGPOST=0.9969;RSQ=0.7900;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69973614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.1005;AVGPOST=0.9990;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 69973618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0080;AVGPOST=0.9996;RSQ=0.9800;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69973652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0105;AVGPOST=0.9992;RSQ=0.9643;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69973654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6461;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69973655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.5921;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69973823 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0065;AVGPOST=0.9952;RSQ=0.7067;ERATE=0.0012;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69973849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0083;AVGPOST=0.9990;RSQ=0.9528;ERATE=0.0005;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69973868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.968;LDAF=0.1256;AVGPOST=0.9915;RSQ=0.9714;ERATE=0.0007;THETA=0.0004;AC=275;AN=2184 GT:DS:GL:BD 0.12591575 0 1 69973906 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1017;AVGPOST=0.9978;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=221;AN=2184 GT:DS:GL:BD 0.10119048 0 1 69973923 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0443;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 69973935 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5960;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69973986 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69974029 . A AC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.5183;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69974119 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0046;AVGPOST=0.9991;RSQ=0.9239;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69974168 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.4304;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69974184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.6312;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0004;THETA=0.0007;AC=1378;AN=2184 GT:DS:GL:BD 0.63095236 1 1 69974232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0054;AVGPOST=0.9990;RSQ=0.9209;ERATE=0.0005;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69974280 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0028;AVGPOST=0.9971;RSQ=0.5973;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69974282 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.957;LDAF=0.0630;AVGPOST=0.9924;RSQ=0.9536;ERATE=0.0008;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 69974350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69974379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0449;AVGPOST=0.9985;RSQ=0.9861;ERATE=0.0004;THETA=0.0018;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 69974536 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4639;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69974537 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.984;LDAF=0.0428;AVGPOST=0.9971;RSQ=0.9728;ERATE=0.0010;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 69974619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0075;AVGPOST=0.9988;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69974685 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0847;AVGPOST=0.9985;RSQ=0.9924;ERATE=0.0004;THETA=0.0009;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 69974822 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69974865 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4254;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69974924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6781;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69974928 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6365;ERATE=0.0005;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69974991 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6195;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69975067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69975153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69975508 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0028;AVGPOST=0.9973;RSQ=0.5774;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69975559 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69975638 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0032;AVGPOST=0.9988;RSQ=0.8312;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69975683 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0046;AVGPOST=0.9990;RSQ=0.9051;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69975720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6316;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0006;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 69975797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0449;AVGPOST=0.9989;RSQ=0.9890;ERATE=0.0003;THETA=0.0004;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 69975835 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7657;AVGPOST=0.9946;RSQ=0.9891;ERATE=0.0007;THETA=0.0008;AC=1674;AN=2184 GT:DS:GL:BD 0.76648355 1 1 69976030 . CTT C 454 PASS INDEL;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0069;AVGPOST=0.9974;RSQ=0.8303;ERATE=0.0006;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69976030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.651;LDAF=0.0026;AVGPOST=0.9973;RSQ=0.5864;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69976065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5258;ERATE=0.0005;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69976104 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0447;AVGPOST=0.9991;RSQ=0.9912;ERATE=0.0003;THETA=0.0002;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 69976108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4989;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69976146 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0458;AVGPOST=0.9979;RSQ=0.9817;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 69976201 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69976221 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5859;AVGPOST=0.9967;RSQ=0.9949;ERATE=0.0005;THETA=0.0038;AC=1278;AN=2184 GT:DS:GL:BD 0.58516484 1 1 69976243 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69976401 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4568;ERATE=0.0003;THETA=0.0052;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69976404 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.965;LDAF=0.6470;AVGPOST=0.9721;RSQ=0.9559;ERATE=0.0059;THETA=0.0131;AC=1423;AN=2184 GT:DS:GL:BD 0.65155679 1 1 69976459 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0119;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69976686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.992;LDAF=0.6189;AVGPOST=0.9891;RSQ=0.9841;ERATE=0.0009;THETA=0.0123;AC=1352;AN=2184 GT:DS:GL:BD 0.61904764 1 1 69976692 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.973;LDAF=0.9413;AVGPOST=0.9925;RSQ=0.9533;ERATE=0.0004;THETA=0.0010;AC=2058;AN=2184 GT:DS:GL:BD 0.94230771 1 1 69976745 . AG A 209 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5867;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69976783 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7442;ERATE=0.0003;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69976815 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0101;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69976845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0034;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69976904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0098;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69977073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0553;AVGPOST=0.9973;RSQ=0.9806;ERATE=0.0006;THETA=0.0060;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 69977079 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0285;AVGPOST=0.9931;RSQ=0.9046;ERATE=0.0005;THETA=0.0075;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 69977151 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.977;LDAF=0.3394;AVGPOST=0.9846;RSQ=0.9757;ERATE=0.0008;THETA=0.0130;AC=743;AN=2184 GT:DS:GL:BD 0.34020147 0 1 69977195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.980;LDAF=0.3311;AVGPOST=0.9899;RSQ=0.9842;ERATE=0.0005;THETA=0.0044;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 69977306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.2802;AVGPOST=0.9906;RSQ=0.9841;ERATE=0.0005;THETA=0.0050;AC=610;AN=2184 GT:DS:GL:BD 0.27930403 0 1 69977357 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5080;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69977564 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0047;AVGPOST=0.9939;RSQ=0.5496;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69977732 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6640;ERATE=0.0003;THETA=0.0152;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69977746 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69977758 . G GAT 139 PASS INDEL;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7270;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69977786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7530;ERATE=0.0003;THETA=0.0060;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69977855 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2627;AVGPOST=0.9931;RSQ=0.9878;ERATE=0.0007;THETA=0.0005;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 69977920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6737;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69977929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.8953;ERATE=0.0004;THETA=0.0030;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69978001 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69978022 rs75495356 AT A 17140 PASS INDEL;BAVGPOST=0.988;BRSQ=0.966;LDAF=0.1708;AVGPOST=0.9856;RSQ=0.9651;ERATE=0.0029;THETA=0.0003;AC=372;AN=2184 GT:DS:GL:BD 0.17032968 0 1 69978044 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2587;AVGPOST=0.9980;RSQ=0.9961;ERATE=0.0004;THETA=0.0030;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 69978056 . C CT 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4953;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69978075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.4955;AVGPOST=0.9959;RSQ=0.9944;ERATE=0.0005;THETA=0.0037;AC=1082;AN=2184 GT:DS:GL:BD 0.49542123 0 1 69978110 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.781;LDAF=0.0075;AVGPOST=0.9979;RSQ=0.8911;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 69978223 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2589;AVGPOST=0.9973;RSQ=0.9951;ERATE=0.0005;THETA=0.0002;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 69978310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.943;LDAF=0.0292;AVGPOST=0.9949;RSQ=0.9285;ERATE=0.0004;THETA=0.0003;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 69978311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8656;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69978479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6794;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69978485 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0002;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69978497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0040;AVGPOST=0.9996;RSQ=0.9650;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69978533 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8088;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69978688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9934;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69978768 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8629;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69978784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6694;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69978994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8496;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69979070 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9290;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69979142 rs35646074 A AG 44 PASS INDEL;BAVGPOST=0.972;BRSQ=0.117;LDAF=0.0391;AVGPOST=0.9703;RSQ=0.7019;ERATE=0.0009;THETA=0.0010;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 69979161 . G GA 465 PASS INDEL;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8110;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69979163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69979174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2143;AVGPOST=0.9972;RSQ=0.9937;ERATE=0.0004;THETA=0.0003;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 69979316 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69979381 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69979444 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0883;AVGPOST=0.9995;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=193;AN=2184 GT:DS:GL:BD 0.08836997 0 1 69979564 . T TG 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.634;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7621;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69979801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69979900 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0155;AVGPOST=0.9988;RSQ=0.9775;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69979948 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6343;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69979977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0633;AVGPOST=0.9993;RSQ=0.9952;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 69980043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980049 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4949;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0091;AVGPOST=0.9995;RSQ=0.9758;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69980124 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2129;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=464;AN=2184 GT:DS:GL:BD 0.21245421 0 1 69980125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7882;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69980197 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6293;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980229 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8196;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69980234 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8957;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69980235 . C CA 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0021;AVGPOST=0.9981;RSQ=0.6398;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69980236 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5604;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.4944;AVGPOST=0.9956;RSQ=0.9938;ERATE=0.0005;THETA=0.0006;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 69980280 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3025;AVGPOST=0.9951;RSQ=0.9913;ERATE=0.0009;THETA=0.0007;AC=659;AN=2184 GT:DS:GL:BD 0.30173993 0 1 69980308 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69980359 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980486 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9593;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69980792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69980843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0343;AVGPOST=0.9998;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 69980895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6180;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69980915 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0305;AVGPOST=0.9982;RSQ=0.9802;ERATE=0.0003;THETA=0.0004;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69980974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1761;AVGPOST=0.9975;RSQ=0.9935;ERATE=0.0004;THETA=0.0010;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 69980989 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0280;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0003;THETA=0.0009;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 69980994 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5298;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981125 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6762;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69981158 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981168 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9003;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69981339 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8541;AVGPOST=0.9954;RSQ=0.9872;ERATE=0.0005;THETA=0.0004;AC=1864;AN=2184 GT:DS:GL:BD 0.85347986 1 1 69981340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0077;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981419 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6457;ERATE=0.0004;THETA=0.0046;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69981521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.3223;AVGPOST=0.9806;RSQ=0.9675;ERATE=0.0044;THETA=0.0044;AC=696;AN=2184 GT:DS:GL:BD 0.31868133 0 1 69981575 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0116;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0311;AVGPOST=0.9947;RSQ=0.9406;ERATE=0.0003;THETA=0.0034;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69981606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0004;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981669 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.984;LDAF=0.1216;AVGPOST=0.9949;RSQ=0.9820;ERATE=0.0003;THETA=0.0055;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 69981679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8830;ERATE=0.0003;THETA=0.0036;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69981686 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.9087;ERATE=0.0003;THETA=0.0049;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69981689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0003;THETA=0.0115;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69981693 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9666;ERATE=0.0003;THETA=0.0146;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69981705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3052;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 69981714 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981801 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.974;LDAF=0.1004;AVGPOST=0.9952;RSQ=0.9779;ERATE=0.0010;THETA=0.0206;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69981862 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0216;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69981937 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.973;LDAF=0.2193;AVGPOST=0.9881;RSQ=0.9744;ERATE=0.0032;THETA=0.0042;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 69982086 . TG T 86 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6856;ERATE=0.0003;THETA=0.0160;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69982107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0187;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69982170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0096;AVGPOST=0.9987;RSQ=0.9471;ERATE=0.0003;THETA=0.0016;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69982179 . CCATGA C 343 PASS INDEL;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7205;ERATE=0.0005;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69982382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1335;AVGPOST=0.9967;RSQ=0.9898;ERATE=0.0004;THETA=0.0100;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 69982518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8399;ERATE=0.0003;THETA=0.0050;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69982523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0049;AVGPOST=0.9990;RSQ=0.9205;ERATE=0.0003;THETA=0.0063;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69982952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0239;AVGPOST=0.9995;RSQ=0.9906;ERATE=0.0003;THETA=0.0007;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 69983008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1267;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0004;THETA=0.0013;AC=277;AN=2184 GT:DS:GL:BD 0.12683150 0 1 69983083 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0304;AVGPOST=0.9993;RSQ=0.9918;ERATE=0.0003;THETA=0.0011;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69983086 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69983122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.632;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6889;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69983181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7012;ERATE=0.0003;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69983202 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4795;AVGPOST=0.9942;RSQ=0.9918;ERATE=0.0007;THETA=0.0008;AC=1048;AN=2184 GT:DS:GL:BD 0.47985348 0 1 69983286 . GC G 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69983361 . CA C 1103 PASS INDEL;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0234;AVGPOST=0.9888;RSQ=0.8100;ERATE=0.0017;THETA=0.0026;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69983445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69983611 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0030;AVGPOST=0.9953;RSQ=0.3238;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69983614 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8637;AVGPOST=0.9985;RSQ=0.9953;ERATE=0.0003;THETA=0.0018;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 69983659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.965;LDAF=0.8424;AVGPOST=0.9845;RSQ=0.9609;ERATE=0.0033;THETA=0.0009;AC=1851;AN=2184 GT:DS:GL:BD 0.84752744 1 1 69983701 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.839;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.8094;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69983891 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.556;LDAF=0.0061;AVGPOST=0.9934;RSQ=0.5931;ERATE=0.0006;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69983935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0057;AVGPOST=0.9961;RSQ=0.7108;ERATE=0.0007;THETA=0.0018;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69984010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.712;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7626;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69984025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0122;AVGPOST=0.9956;RSQ=0.8405;ERATE=0.0009;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69984236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0116;AVGPOST=0.9979;RSQ=0.9319;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69984237 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0213;AVGPOST=0.9970;RSQ=0.9443;ERATE=0.0007;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 69984258 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.880;LDAF=0.7862;AVGPOST=0.9649;RSQ=0.9270;ERATE=0.0007;THETA=0.0006;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 69984323 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.812;LDAF=0.8221;AVGPOST=0.8946;RSQ=0.7562;ERATE=0.0169;THETA=0.0007;AC=1854;AN=2184 GT:DS:GL:BD 0.84890109 1 1 69984338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0014;AVGPOST=0.9979;RSQ=0.3959;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69984429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.645;LDAF=0.0049;AVGPOST=0.9962;RSQ=0.7518;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69984433 . TG T 197 PASS INDEL;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8345;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69984490 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6619;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69984509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5149;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69984688 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.892;LDAF=0.8274;AVGPOST=0.9393;RSQ=0.8668;ERATE=0.0085;THETA=0.0013;AC=1843;AN=2184 GT:DS:GL:BD 0.84386444 1 1 69984691 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0131;AVGPOST=0.9944;RSQ=0.8277;ERATE=0.0005;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69984788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69985009 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 69985048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69985058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0105;AVGPOST=0.9992;RSQ=0.9686;ERATE=0.0003;THETA=0.0015;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69985086 . CT C 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0038;AVGPOST=0.9967;RSQ=0.6809;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69985103 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8640;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0003;THETA=0.0016;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 69985133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5869;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69985325 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4614;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69985455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2573;AVGPOST=0.9937;RSQ=0.9866;ERATE=0.0009;THETA=0.0005;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 69985764 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.8464;AVGPOST=0.9906;RSQ=0.9765;ERATE=0.0030;THETA=0.0003;AC=1851;AN=2184 GT:DS:GL:BD 0.84752744 1 1 69985793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9535;AVGPOST=0.9982;RSQ=0.9854;ERATE=0.0005;THETA=0.0029;AC=2083;AN=2184 GT:DS:GL:BD 0.95375460 1 1 69985821 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69985929 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.8488;AVGPOST=0.9973;RSQ=0.9928;ERATE=0.0006;THETA=0.0012;AC=1855;AN=2184 GT:DS:GL:BD 0.84935898 1 1 69985977 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6552;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69986017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5973;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69986024 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8516;AVGPOST=0.9992;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=1860;AN=2184 GT:DS:GL:BD 0.85164833 1 1 69986231 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8635;AVGPOST=0.9983;RSQ=0.9945;ERATE=0.0004;THETA=0.0005;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 69986467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8720;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69986667 . TTG T 5327 PASS INDEL;BAVGPOST=0.978;BRSQ=0.954;LDAF=0.2453;AVGPOST=0.9847;RSQ=0.9724;ERATE=0.0005;THETA=0.0004;AC=537;AN=2184 GT:DS:GL:BD 0.24587911 0 1 69986875 rs59536831 TG T 22869 PASS INDEL;BAVGPOST=0.979;BRSQ=0.956;LDAF=0.2491;AVGPOST=0.9849;RSQ=0.9729;ERATE=0.0013;THETA=0.0004;AC=545;AN=2184 GT:DS:GL:BD 0.24954212 0 1 69986876 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8635;ERATE=0.0003;THETA=0.0019;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69987006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4517;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987008 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987084 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.931;LDAF=0.0300;AVGPOST=0.9954;RSQ=0.9447;ERATE=0.0003;THETA=0.0003;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 69987169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0541;AVGPOST=0.9995;RSQ=0.9954;ERATE=0.0004;THETA=0.0003;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 69987218 rs71100894 GA G 69483 PASS INDEL;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5495;AVGPOST=0.9944;RSQ=0.9924;ERATE=0.0007;THETA=0.0007;AC=1199;AN=2184 GT:DS:GL:BD 0.54899269 1 1 69987272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8642;AVGPOST=0.9993;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 69987296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6183;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69987339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8507;AVGPOST=0.9982;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=1857;AN=2184 GT:DS:GL:BD 0.85027474 1 1 69987407 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987461 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0101;AVGPOST=0.9983;RSQ=0.9352;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69987523 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0541;AVGPOST=0.9997;RSQ=0.9972;ERATE=0.0003;THETA=0.0008;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 69987590 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6380;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.8516;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=1859;AN=2184 GT:DS:GL:BD 0.85119045 1 1 69987693 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0105;AVGPOST=0.9992;RSQ=0.9732;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69987713 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4794;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9067;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 69987845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.904;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9085;ERATE=0.0005;THETA=0.0018;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 69987887 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0010;AVGPOST=0.9987;RSQ=0.4555;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69987931 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.947;LDAF=0.8264;AVGPOST=0.9895;RSQ=0.9771;ERATE=0.0014;THETA=0.0004;AC=1810;AN=2184 GT:DS:GL:BD 0.82875460 1 1 69987979 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.580;LDAF=0.0082;AVGPOST=0.9930;RSQ=0.6553;ERATE=0.0008;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69987981 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8015;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988089 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5134;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7654;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69988149 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5261;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988176 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0062;AVGPOST=0.9968;RSQ=0.8080;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69988177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2562;AVGPOST=0.9982;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 69988291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8640;AVGPOST=0.9995;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=1887;AN=2184 GT:DS:GL:BD 0.86401099 1 1 69988555 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.960;LDAF=0.0355;AVGPOST=0.9946;RSQ=0.9440;ERATE=0.0003;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 69988753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5749;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988758 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988759 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5238;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69988789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69988794 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0028;AVGPOST=0.9996;RSQ=0.9407;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69988842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5247;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988907 . A AC 40 PASS INDEL;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0019;AVGPOST=0.9974;RSQ=0.4837;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69988942 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69988964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9418;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69989086 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6356;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69989144 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0080;AVGPOST=0.9982;RSQ=0.9149;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 69989232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69989323 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0088;AVGPOST=0.9977;RSQ=0.8872;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 69989395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9994;RSQ=0.9486;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69989413 . TCTTTC T 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8388;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69989424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69989464 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7745;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69989619 rs112638475 GTA G 20 PASS INDEL;BAVGPOST=0.995;BRSQ=0.653;LDAF=0.0197;AVGPOST=0.9768;RSQ=0.5138;ERATE=0.0051;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69989669 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9917;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69989796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8252;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69989909 . AAATC A 313 PASS INDEL;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0038;AVGPOST=0.9991;RSQ=0.8929;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69990028 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 69990064 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9332;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69990262 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9636;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69990298 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6322;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69990536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5678;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69990580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0152;AVGPOST=0.9989;RSQ=0.9659;ERATE=0.0004;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69990603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0023;AVGPOST=0.9978;RSQ=0.6139;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69990677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7352;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69990889 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6404;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69990918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9181;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69990924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69990952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0037;AVGPOST=0.9972;RSQ=0.7086;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69991135 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69991185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4897;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69991356 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6601;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69991362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6713;AVGPOST=0.9975;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=1464;AN=2184 GT:DS:GL:BD 0.67032969 1 1 69991455 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69991542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.7885;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69991779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9587;ERATE=0.0004;THETA=0.0012;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69991870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.727;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6022;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69991987 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0136;AVGPOST=0.9974;RSQ=0.9174;ERATE=0.0004;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 69992005 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9793;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69992110 . ATTAG A 90 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0024;AVGPOST=0.9962;RSQ=0.2744;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69992190 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0170;AVGPOST=0.9986;RSQ=0.9627;ERATE=0.0004;THETA=0.0015;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 69992199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9013;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69992327 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8609;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69992362 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6053;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69992445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7796;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69992560 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1456;AVGPOST=0.9979;RSQ=0.9933;ERATE=0.0004;THETA=0.0005;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 69992646 . AG A 354 PASS INDEL;BAVGPOST=0.998;BRSQ=0.765;LDAF=0.0048;AVGPOST=0.9975;RSQ=0.7891;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69992786 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69992846 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0310;AVGPOST=0.9988;RSQ=0.9818;ERATE=0.0004;THETA=0.0007;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 69992855 . C CA 139 PASS INDEL;BAVGPOST=0.998;BRSQ=0.723;LDAF=0.0060;AVGPOST=0.9936;RSQ=0.5857;ERATE=0.0010;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69992936 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69992977 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7192;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69993035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6229;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69993083 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5861;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69993132 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8249;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69993153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.837;LDAF=0.0166;AVGPOST=0.9952;RSQ=0.8872;ERATE=0.0005;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 69993190 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69993228 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8699;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69993272 . C CT 109 PASS INDEL;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.3557;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69993400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69993503 . C CTTGAT 217 PASS INDEL;BAVGPOST=0.999;BRSQ=0.697;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6429;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69993528 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0042;AVGPOST=0.9982;RSQ=0.8082;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69993592 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1003;AVGPOST=0.9991;RSQ=0.9969;ERATE=0.0003;THETA=0.0011;AC=219;AN=2184 GT:DS:GL:BD 0.10027473 0 1 69993717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0038;AVGPOST=0.9993;RSQ=0.9197;ERATE=0.0003;THETA=0.0051;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 69993956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.969;LDAF=0.3043;AVGPOST=0.9792;RSQ=0.9699;ERATE=0.0013;THETA=0.0016;AC=660;AN=2184 GT:DS:GL:BD 0.30219781 0 1 69993985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0035;AVGPOST=0.9969;RSQ=0.6462;ERATE=0.0005;THETA=0.0106;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69994017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0133;AVGPOST=0.9979;RSQ=0.9279;ERATE=0.0005;THETA=0.0028;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 69994018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.1931;AVGPOST=0.9858;RSQ=0.9671;ERATE=0.0007;THETA=0.0012;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 69994075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8715;ERATE=0.0006;THETA=0.0014;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69994089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0022;AVGPOST=0.9977;RSQ=0.5776;ERATE=0.0003;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69994229 . TA T 323 PASS INDEL;BAVGPOST=0.993;BRSQ=0.724;LDAF=0.0155;AVGPOST=0.9867;RSQ=0.6684;ERATE=0.0024;THETA=0.0035;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 69994243 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7592;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69994364 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0107;AVGPOST=0.9985;RSQ=0.9433;ERATE=0.0004;THETA=0.0032;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69994414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.587;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69994448 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7418;ERATE=0.0005;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69994466 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69994478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6383;ERATE=0.0004;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69994492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69994524 . C CA 7443 PASS INDEL;BAVGPOST=0.941;BRSQ=0.908;LDAF=0.3902;AVGPOST=0.9250;RSQ=0.9019;ERATE=0.0065;THETA=0.0005;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 69994671 rs34082771 A AC 35271 PASS INDEL;BAVGPOST=0.951;BRSQ=0.927;LDAF=0.4150;AVGPOST=0.9495;RSQ=0.9348;ERATE=0.0019;THETA=0.0075;AC=916;AN=2184 GT:DS:GL:BD 0.41941392 0 1 69994673 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9380;ERATE=0.0003;THETA=0.0066;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69994710 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7537;ERATE=0.0010;THETA=0.0029;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69994737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0299;AVGPOST=0.9981;RSQ=0.9745;ERATE=0.0005;THETA=0.0008;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 69994895 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.719;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7338;ERATE=0.0005;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69994918 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9817;ERATE=0.0003;THETA=0.0043;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 69995000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.1820;AVGPOST=0.9920;RSQ=0.9809;ERATE=0.0006;THETA=0.0025;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 69995037 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8160;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69995090 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1422;AVGPOST=0.9990;RSQ=0.9974;ERATE=0.0005;THETA=0.0004;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 69995234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0213;AVGPOST=0.9979;RSQ=0.9591;ERATE=0.0003;THETA=0.0014;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 69995475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.475;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.5616;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995565 . A AAAACC 14739 PASS INDEL;BAVGPOST=0.954;BRSQ=0.859;LDAF=0.1989;AVGPOST=0.9320;RSQ=0.8354;ERATE=0.0149;THETA=0.0004;AC=413;AN=2184 GT:DS:GL:BD 0.18910256 0 1 69995604 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8579;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69995613 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.607;LDAF=0.0060;AVGPOST=0.9939;RSQ=0.5919;ERATE=0.0010;THETA=0.0010;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69995633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2359;AVGPOST=0.9977;RSQ=0.9954;ERATE=0.0004;THETA=0.0009;AC=516;AN=2184 GT:DS:GL:BD 0.23626374 0 1 69995783 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.6295;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69995816 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69995898 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2371;AVGPOST=0.9989;RSQ=0.9977;ERATE=0.0004;THETA=0.0003;AC=519;AN=2184 GT:DS:GL:BD 0.23763736 0 1 69995990 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0112;AVGPOST=0.9995;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69995993 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9864;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 69995999 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0047;AVGPOST=0.9984;RSQ=0.8422;ERATE=0.0010;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69996016 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1224;AVGPOST=0.9990;RSQ=0.9973;ERATE=0.0003;THETA=0.0007;AC=268;AN=2184 GT:DS:GL:BD 0.12271062 0 1 69996027 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8314;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69996099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.1826;AVGPOST=0.9982;RSQ=0.9952;ERATE=0.0003;THETA=0.0008;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 69996124 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0196;AVGPOST=0.9995;RSQ=0.9893;ERATE=0.0003;THETA=0.0024;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 69996126 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9996;RSQ=0.9909;ERATE=0.0003;THETA=0.0009;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69996207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0152;AVGPOST=0.9991;RSQ=0.9739;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 69996257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2332;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0005;THETA=0.0006;AC=510;AN=2184 GT:DS:GL:BD 0.23351648 0 1 69996268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5713;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69996374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1053;AVGPOST=0.9995;RSQ=0.9973;ERATE=0.0004;THETA=0.0003;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 69996375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69996376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0876;AVGPOST=0.9989;RSQ=0.9961;ERATE=0.0003;THETA=0.0003;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 69996416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7470;ERATE=0.0009;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69996512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0108;AVGPOST=0.9995;RSQ=0.9840;ERATE=0.0003;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69996521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9929;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 69996689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.675;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7321;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69996690 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6085;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69996841 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8864;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69996899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1773;AVGPOST=0.9983;RSQ=0.9956;ERATE=0.0004;THETA=0.0003;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 69996927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0982;AVGPOST=0.9991;RSQ=0.9954;ERATE=0.0005;THETA=0.0005;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 69997016 . GC G 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4564;ERATE=0.0005;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997066 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.809;LDAF=0.0183;AVGPOST=0.9967;RSQ=0.9300;ERATE=0.0006;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 69997241 . G GA 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4653;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997274 . TTAAGTTCCCAC T 139 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4364;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0951;AVGPOST=0.9989;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 69997330 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2174;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0005;THETA=0.0008;AC=476;AN=2184 GT:DS:GL:BD 0.21794872 0 1 69997345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0433;AVGPOST=0.9983;RSQ=0.9853;ERATE=0.0003;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 69997405 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1821;AVGPOST=0.9986;RSQ=0.9961;ERATE=0.0005;THETA=0.0007;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 69997538 rs66575634 CTA C 23814 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1182;AVGPOST=0.9975;RSQ=0.9927;ERATE=0.0006;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 69997594 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7585;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69997628 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0954;AVGPOST=0.9993;RSQ=0.9962;ERATE=0.0003;THETA=0.0004;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 69997635 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6729;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997666 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7264;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69997667 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997680 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.6730;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 69997718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69997720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0087;AVGPOST=0.9984;RSQ=0.9296;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 69997866 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2182;AVGPOST=0.9994;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=477;AN=2184 GT:DS:GL:BD 0.21840659 0 1 69997867 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 69997975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0030;AVGPOST=0.9966;RSQ=0.5765;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69997992 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9975;RSQ=0.9641;ERATE=0.0003;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 69997994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998006 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5253;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0216;AVGPOST=0.9995;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 69998071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8594;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5665;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9461;ERATE=0.0008;THETA=0.0011;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 69998297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69998308 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0100;AVGPOST=0.9993;RSQ=0.9718;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 69998356 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8787;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 69998357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.9084;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 69998360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8184;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 69998420 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1816;AVGPOST=0.9994;RSQ=0.9981;ERATE=0.0003;THETA=0.0007;AC=397;AN=2184 GT:DS:GL:BD 0.18177655 0 1 69998459 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2468;AVGPOST=0.9994;RSQ=0.9987;ERATE=0.0004;THETA=0.0003;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 69998500 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9477;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 69998507 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2473;AVGPOST=0.9944;RSQ=0.9901;ERATE=0.0029;THETA=0.0003;AC=540;AN=2184 GT:DS:GL:BD 0.24725275 0 1 69998633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0098;AVGPOST=0.9995;RSQ=0.9777;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 69998713 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1183;AVGPOST=0.9974;RSQ=0.9923;ERATE=0.0004;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 69998722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.985;LDAF=0.1256;AVGPOST=0.9976;RSQ=0.9922;ERATE=0.0005;THETA=0.0004;AC=274;AN=2184 GT:DS:GL:BD 0.12545788 0 1 69998763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.3839;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69998814 . GAGCCA G 191 PASS INDEL;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5052;ERATE=0.0011;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69998875 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0413;AVGPOST=0.9965;RSQ=0.9669;ERATE=0.0004;THETA=0.0007;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 69998914 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6471;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69999055 . TAATG T 191 PASS INDEL;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6678;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69999073 . TGAG T 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6142;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69999076 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5687;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69999085 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 69999308 rs66522441 CCT C 6144 PASS INDEL;BAVGPOST=0.993;BRSQ=0.955;LDAF=0.0636;AVGPOST=0.9960;RSQ=0.9705;ERATE=0.0011;THETA=0.0003;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 69999371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2131;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0002;AC=466;AN=2184 GT:DS:GL:BD 0.21336997 0 1 69999429 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7495;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 69999570 . TTGAC T 365 PASS INDEL;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9240;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 69999612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7329;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 69999766 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3038;AVGPOST=0.9995;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=665;AN=2184 GT:DS:GL:BD 0.30448717 0 1 69999859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6159;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70000049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7421;ERATE=0.0002;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70000118 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4424;AVGPOST=0.9992;RSQ=0.9986;ERATE=0.0004;THETA=0.0002;AC=966;AN=2184 GT:DS:GL:BD 0.44230768 0 1 70000120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4288;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70000286 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7710;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70000340 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.5503;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70000442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0124;AVGPOST=0.9995;RSQ=0.9792;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70000479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5434;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70000512 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0128;AVGPOST=0.9986;RSQ=0.9553;ERATE=0.0003;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70000531 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0004;AVGPOST=0.9994;RSQ=0.3933;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70000575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0626;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0002;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70000888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9498;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70000977 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7446;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=1628;AN=2184 GT:DS:GL:BD 0.74542123 1 1 70001016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70001023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70001164 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4411;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70001441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5251;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70001538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.4374;AVGPOST=0.9892;RSQ=0.9831;ERATE=0.0034;THETA=0.0004;AC=958;AN=2184 GT:DS:GL:BD 0.43864468 0 1 70001646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.955;LDAF=0.1756;AVGPOST=0.9906;RSQ=0.9787;ERATE=0.0005;THETA=0.0007;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 70001675 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1858;AVGPOST=0.9987;RSQ=0.9968;ERATE=0.0003;THETA=0.0002;AC=404;AN=2184 GT:DS:GL:BD 0.18498169 0 1 70001708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0152;AVGPOST=0.9974;RSQ=0.9321;ERATE=0.0003;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70001765 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7444;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0006;THETA=0.0002;AC=1628;AN=2184 GT:DS:GL:BD 0.74542123 1 1 70001785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4409;AVGPOST=0.9978;RSQ=0.9963;ERATE=0.0007;THETA=0.0004;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70001802 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.873;LDAF=0.0341;AVGPOST=0.9941;RSQ=0.9311;ERATE=0.0004;THETA=0.0002;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70001809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6606;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70001868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1864;AVGPOST=0.9983;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=406;AN=2184 GT:DS:GL:BD 0.18589744 0 1 70001894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1282;AVGPOST=0.9979;RSQ=0.9925;ERATE=0.0004;THETA=0.0002;AC=279;AN=2184 GT:DS:GL:BD 0.12774725 0 1 70001963 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4353;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4607;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0069;AVGPOST=0.9957;RSQ=0.7748;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70002225 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4306;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002299 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0438;AVGPOST=0.9992;RSQ=0.9916;ERATE=0.0004;THETA=0.0003;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 70002310 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0104;AVGPOST=0.9988;RSQ=0.9579;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70002324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8349;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70002364 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0126;AVGPOST=0.9993;RSQ=0.9736;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70002437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0080;AVGPOST=0.9989;RSQ=0.9371;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70002471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.946;LDAF=0.7258;AVGPOST=0.9716;RSQ=0.9459;ERATE=0.0048;THETA=0.0003;AC=1599;AN=2184 GT:DS:GL:BD 0.73214287 1 1 70002505 . T TA 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002523 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.3624;AVGPOST=0.9907;RSQ=0.9847;ERATE=0.0037;THETA=0.0003;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 70002554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5059;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0271;AVGPOST=0.9995;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70002562 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4881;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002605 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0060;AVGPOST=0.9972;RSQ=0.8117;ERATE=0.0004;THETA=0.0001;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70002653 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9333;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70002661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5838;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70002702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6808;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70002795 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0774;AVGPOST=0.9995;RSQ=0.9968;ERATE=0.0003;THETA=0.0001;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70003023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4902;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70003037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0271;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0002;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70003045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1295;AVGPOST=0.9966;RSQ=0.9887;ERATE=0.0004;THETA=0.0005;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 70003208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.983;LDAF=0.1265;AVGPOST=0.9971;RSQ=0.9899;ERATE=0.0004;THETA=0.0004;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 70003612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.5213;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70003623 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70003701 . CCATGTG C 281 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70003706 . CA C 651 PASS INDEL;BAVGPOST=0.948;BRSQ=0.629;LDAF=0.1025;AVGPOST=0.9006;RSQ=0.5888;ERATE=0.0109;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 70003778 . A AC 7031 PASS INDEL;BAVGPOST=0.898;BRSQ=0.802;LDAF=0.3034;AVGPOST=0.8665;RSQ=0.7834;ERATE=0.0199;THETA=0.0002;AC=663;AN=2184 GT:DS:GL:BD 0.30357143 0 1 70003781 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.931;LDAF=0.3660;AVGPOST=0.9284;RSQ=0.8916;ERATE=0.0177;THETA=0.0004;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 70003782 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.899;LDAF=0.0092;AVGPOST=0.9961;RSQ=0.8178;ERATE=0.0011;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70003799 . GA G 5290 PASS INDEL;BAVGPOST=0.760;BRSQ=0.663;LDAF=0.5113;AVGPOST=0.7559;RSQ=0.6849;ERATE=0.0398;THETA=0.0003;AC=1186;AN=2184 GT:DS:GL:BD 0.54304028 1 1 70003817 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.959;LDAF=0.1293;AVGPOST=0.9917;RSQ=0.9703;ERATE=0.0029;THETA=0.0002;AC=282;AN=2184 GT:DS:GL:BD 0.12912089 0 1 70003847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.7444;AVGPOST=0.9956;RSQ=0.9907;ERATE=0.0014;THETA=0.0004;AC=1628;AN=2184 GT:DS:GL:BD 0.74542123 1 1 70003884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8041;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70003897 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70003904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8531;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70004050 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.9313;AVGPOST=0.9982;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=2035;AN=2184 GT:DS:GL:BD 0.93177658 1 1 70004219 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7673;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70004387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.9275;AVGPOST=0.9995;RSQ=0.9981;ERATE=0.0002;THETA=0.0006;AC=2025;AN=2184 GT:DS:GL:BD 0.92719781 1 1 70004422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70004463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70004533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70004602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9654;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70004753 . CA C 703 PASS INDEL;BAVGPOST=0.998;BRSQ=0.792;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8682;ERATE=0.0004;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70004804 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8824;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70004806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0026;AVGPOST=0.9965;RSQ=0.5558;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70004887 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9173;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70005042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.934;LDAF=0.0745;AVGPOST=0.9962;RSQ=0.9792;ERATE=0.0003;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 70005046 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7244;AVGPOST=0.9970;RSQ=0.9948;ERATE=0.0003;THETA=0.0009;AC=1586;AN=2184 GT:DS:GL:BD 0.72619045 1 1 70005047 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70005079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70005490 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7021;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70005558 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5269;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70005599 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70005680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0002;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70005777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8542;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70005827 . CG C 5656 PASS INDEL;BAVGPOST=0.970;BRSQ=0.916;LDAF=0.1936;AVGPOST=0.9900;RSQ=0.9764;ERATE=0.0003;THETA=0.0005;AC=426;AN=2184 GT:DS:GL:BD 0.19505495 0 1 70005889 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7184;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70005998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7724;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70006133 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7975;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70006159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8126;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70006209 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9400;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0002;THETA=0.0011;AC=2053;AN=2184 GT:DS:GL:BD 0.94001830 1 1 70006210 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0023;AVGPOST=0.9972;RSQ=0.5748;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70006246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6612;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70006249 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8263;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70006445 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9114;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70006561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9581;ERATE=0.0002;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70006602 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0030;AVGPOST=0.9979;RSQ=0.7631;ERATE=0.0002;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70007045 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9309;AVGPOST=0.9997;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 70007052 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6151;ERATE=0.0002;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70007153 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0603;AVGPOST=0.9992;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 70007219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70007221 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70007241 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70007246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0075;AVGPOST=0.9988;RSQ=0.9341;ERATE=0.0003;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70007390 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6651;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70007456 . C CA 45 PASS INDEL;BAVGPOST=0.994;BRSQ=0.494;LDAF=0.0105;AVGPOST=0.9881;RSQ=0.5789;ERATE=0.0021;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70007480 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9709;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70007750 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9309;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0002;THETA=0.0017;AC=2033;AN=2184 GT:DS:GL:BD 0.93086082 1 1 70007782 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9720;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70007959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8407;ERATE=0.0002;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70008242 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2008;AVGPOST=0.9998;RSQ=0.9994;ERATE=0.0003;THETA=0.0003;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 70008250 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0032;AVGPOST=0.9979;RSQ=0.7513;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70008294 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.795;LDAF=0.0085;AVGPOST=0.9969;RSQ=0.8396;ERATE=0.0004;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70008336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.808;LDAF=0.0035;AVGPOST=0.9960;RSQ=0.5728;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70008337 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.9298;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70008405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.5401;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70008617 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8973;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70008645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2005;AVGPOST=0.9995;RSQ=0.9988;ERATE=0.0002;THETA=0.0007;AC=436;AN=2184 GT:DS:GL:BD 0.19963370 0 1 70008656 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6899;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70008715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0435;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0016;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 70008827 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.702;LDAF=0.0139;AVGPOST=0.9913;RSQ=0.7651;ERATE=0.0005;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70008880 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70008909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.7210;AVGPOST=0.9952;RSQ=0.9911;ERATE=0.0009;THETA=0.0003;AC=1576;AN=2184 GT:DS:GL:BD 0.72161174 1 1 70009036 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0016;AVGPOST=0.9980;RSQ=0.5076;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70009123 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8240;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70009138 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.649;LDAF=0.0037;AVGPOST=0.9971;RSQ=0.6797;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70009145 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.5653;AVGPOST=0.9809;RSQ=0.9715;ERATE=0.0005;THETA=0.0004;AC=1244;AN=2184 GT:DS:GL:BD 0.56959707 1 1 70009153 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.701;LDAF=0.0041;AVGPOST=0.9950;RSQ=0.5167;ERATE=0.0005;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70009174 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0026;AVGPOST=0.9981;RSQ=0.6870;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70009180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.849;LDAF=0.9001;AVGPOST=0.9752;RSQ=0.9063;ERATE=0.0011;THETA=0.0002;AC=1980;AN=2184 GT:DS:GL:BD 0.90659338 1 1 70009196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0029;AVGPOST=0.9967;RSQ=0.5854;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70009482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8369;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70009490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0020;AVGPOST=0.9968;RSQ=0.3710;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70009524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70009621 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.769;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9403;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70009675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0052;AVGPOST=0.9990;RSQ=0.9371;ERATE=0.0002;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70009704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1415;AVGPOST=0.9988;RSQ=0.9957;ERATE=0.0003;THETA=0.0002;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 70009788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6204;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70009844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9019;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70009887 . TA T 101 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0036;AVGPOST=0.9985;RSQ=0.8509;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70009991 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5158;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70010049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1411;AVGPOST=0.9990;RSQ=0.9963;ERATE=0.0004;THETA=0.0009;AC=308;AN=2184 GT:DS:GL:BD 0.14102565 0 1 70010065 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7089;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70010097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6507;ERATE=0.0006;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70010237 . T TA 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4609;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70010339 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.902;LDAF=0.0161;AVGPOST=0.9947;RSQ=0.8688;ERATE=0.0005;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70010463 . ATTC A 1790 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0115;AVGPOST=0.9989;RSQ=0.9581;ERATE=0.0004;THETA=0.0002;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70010538 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70010591 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.562;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8254;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70010632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.638;LDAF=0.0041;AVGPOST=0.9985;RSQ=0.8332;ERATE=0.0005;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70010661 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0156;AVGPOST=0.9994;RSQ=0.9816;ERATE=0.0003;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70010679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0929;AVGPOST=0.9985;RSQ=0.9920;ERATE=0.0002;THETA=0.0002;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 70010735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0044;AVGPOST=0.9966;RSQ=0.7050;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70010830 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.9098;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70010848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70011063 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0337;AVGPOST=0.9981;RSQ=0.9788;ERATE=0.0003;THETA=0.0005;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70011114 . T TC 1228 PASS INDEL;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0221;AVGPOST=0.9958;RSQ=0.9232;ERATE=0.0004;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70011220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.833;LDAF=0.0056;AVGPOST=0.9977;RSQ=0.8417;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70011302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7025;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70011354 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8832;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70011377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.739;LDAF=0.0114;AVGPOST=0.9928;RSQ=0.7682;ERATE=0.0004;THETA=0.0011;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70011448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5932;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70011460 . G GC 1132 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9714;ERATE=0.0004;THETA=0.0001;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70011466 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3682;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0004;THETA=0.0005;AC=804;AN=2184 GT:DS:GL:BD 0.36813188 0 1 70011645 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8469;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70011745 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.671;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7294;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70011781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70011874 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70011948 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6555;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70011952 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9993;RSQ=0.9711;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70011982 rs10633005 G GTTC 133984 PASS INDEL;BAVGPOST=0.997;BRSQ=0.815;LDAF=0.9850;AVGPOST=0.9920;RSQ=0.7867;ERATE=0.0008;THETA=0.0002;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 70012009 . G GTTA 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0034;AVGPOST=0.9977;RSQ=0.7326;ERATE=0.0005;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70012072 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1201;AVGPOST=0.9986;RSQ=0.9947;ERATE=0.0003;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 70012102 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70012204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.896;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9169;ERATE=0.0002;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70012262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.8164;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70012268 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70012283 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.672;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8403;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70012303 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6750;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70012309 . G GA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70012312 . TTA T 25 PASS INDEL;BAVGPOST=0.993;BRSQ=0.487;LDAF=0.0193;AVGPOST=0.9746;RSQ=0.4847;ERATE=0.0021;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70012513 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5352;AVGPOST=0.9988;RSQ=0.9978;ERATE=0.0003;THETA=0.0009;AC=1171;AN=2184 GT:DS:GL:BD 0.53617215 1 1 70012534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8937;ERATE=0.0002;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70012808 . CCAGCATGGT C 3055 PASS INDEL;BAVGPOST=0.989;BRSQ=0.767;LDAF=0.0206;AVGPOST=0.9935;RSQ=0.8784;ERATE=0.0004;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70012990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6639;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70012998 . G GTACAAAA 539 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.8736;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70013023 . TCTTC T 129 PASS INDEL;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7640;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70013241 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70013431 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70013531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9499;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70013699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70014059 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0054;AVGPOST=0.9998;RSQ=0.9863;ERATE=0.0002;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70014132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9047;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70014289 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6505;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70014300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4165;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70014306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0123;AVGPOST=0.9957;RSQ=0.8673;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70014338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70014543 . G GT 20 PASS INDEL;BAVGPOST=0.998;BRSQ=0.670;LDAF=0.0076;AVGPOST=0.9900;RSQ=0.5040;ERATE=0.0019;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70014597 . CAA C 112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7907;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70014750 . TA T 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4505;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70014790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9825;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70014797 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7877;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70014929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7905;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70014997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.5076;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70015050 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5546;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70015388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.914;LDAF=0.0165;AVGPOST=0.9986;RSQ=0.9644;ERATE=0.0004;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70015471 . CA C 86 PASS INDEL;BAVGPOST=0.998;BRSQ=0.653;LDAF=0.0039;AVGPOST=0.9961;RSQ=0.6228;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70015612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5445;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70015617 . T TA 98 PASS INDEL;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3738;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70015621 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0452;AVGPOST=0.9986;RSQ=0.9874;ERATE=0.0003;THETA=0.0003;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 70015632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7838;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70015735 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8849;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70015814 . CAT C 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6514;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70015892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9763;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70015920 . T TG 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.773;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5794;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70015951 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.889;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7916;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70015993 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.6169;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70016072 . TTTG T 2883 PASS INDEL;BAVGPOST=0.978;BRSQ=0.745;LDAF=0.0417;AVGPOST=0.9936;RSQ=0.9354;ERATE=0.0005;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 70016106 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6747;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70016122 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.915;LDAF=0.0586;AVGPOST=0.9965;RSQ=0.9752;ERATE=0.0005;THETA=0.0003;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 70016200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.856;LDAF=0.0068;AVGPOST=0.9976;RSQ=0.8635;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70016322 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9994;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 70016371 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8568;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70016383 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0040;AVGPOST=0.9983;RSQ=0.8477;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70016425 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70016455 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70016560 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0118;AVGPOST=0.9992;RSQ=0.9775;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70016611 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6419;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70016939 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.8079;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70017003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0094;AVGPOST=0.9992;RSQ=0.9604;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70017015 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0045;AVGPOST=0.9983;RSQ=0.8546;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70017086 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0026;AVGPOST=0.9993;RSQ=0.8807;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70017152 . CTG C 1397 PASS INDEL;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0084;AVGPOST=0.9989;RSQ=0.9420;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70017201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8831;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70017386 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70017416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.9073;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70017422 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0211;AVGPOST=0.9984;RSQ=0.9703;ERATE=0.0004;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70017467 . T TA 70 PASS INDEL;BAVGPOST=0.996;BRSQ=0.692;LDAF=0.0109;AVGPOST=0.9879;RSQ=0.5205;ERATE=0.0040;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70017497 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4778;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70017521 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70017853 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70018012 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70018027 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70018073 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70018184 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.6323;AVGPOST=0.9950;RSQ=0.9920;ERATE=0.0009;THETA=0.0010;AC=1383;AN=2184 GT:DS:GL:BD 0.63324177 1 1 70018348 . C CT 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.758;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5754;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70018465 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9911;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70018494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70018548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9093;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70018556 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2075;AVGPOST=0.9997;RSQ=0.9991;ERATE=0.0004;THETA=0.0008;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 70018614 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70018700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70018844 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9169;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70018904 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9461;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70019119 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6786;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70019147 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4888;AVGPOST=0.9887;RSQ=0.9830;ERATE=0.0017;THETA=0.0004;AC=1067;AN=2184 GT:DS:GL:BD 0.48855311 0 1 70019418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.884;LDAF=0.0077;AVGPOST=0.9989;RSQ=0.9411;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70019520 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5396;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70019939 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0034;AVGPOST=0.9987;RSQ=0.8268;ERATE=0.0003;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70020374 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5266;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70020485 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0120;AVGPOST=0.9988;RSQ=0.9575;ERATE=0.0004;THETA=0.0027;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70020649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0078;AVGPOST=0.9973;RSQ=0.8815;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70020707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7949;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70020814 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4914;AVGPOST=0.9970;RSQ=0.9960;ERATE=0.0006;THETA=0.0004;AC=1074;AN=2184 GT:DS:GL:BD 0.49175823 0 1 70020895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70021238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6915;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70021242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0420;AVGPOST=0.9999;RSQ=0.9985;ERATE=0.0002;THETA=0.0007;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 70021388 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0231;AVGPOST=0.9993;RSQ=0.9895;ERATE=0.0003;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70021475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8631;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70021486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0158;AVGPOST=0.9989;RSQ=0.9710;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70021698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1726;AVGPOST=0.9993;RSQ=0.9989;ERATE=0.0002;THETA=0.0003;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 70021707 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70021768 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70021856 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9565;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70021871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6947;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70022034 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0006;AVGPOST=0.9999;RSQ=0.7187;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70022375 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70022402 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1197;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 70022489 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70022574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70022581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70022607 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70022620 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70022669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1198;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0002;THETA=0.0003;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 70023037 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=1.000;LDAF=0.4908;AVGPOST=0.9991;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=1073;AN=2184 GT:DS:GL:BD 0.49130037 0 1 70023049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8195;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70023129 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1731;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0003;THETA=0.0006;AC=378;AN=2184 GT:DS:GL:BD 0.17307693 0 1 70023148 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9589;ERATE=0.0003;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70023375 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70023392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1828;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 70023431 . A AG 27447 PASS INDEL;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1726;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0004;THETA=0.0004;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 70023473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.652;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4695;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70023488 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0108;AVGPOST=0.9973;RSQ=0.8846;ERATE=0.0005;THETA=0.0017;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70023614 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0050;AVGPOST=0.9974;RSQ=0.7712;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70023625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.1722;AVGPOST=0.9981;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=377;AN=2184 GT:DS:GL:BD 0.17261904 0 1 70023661 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70024111 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7357;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70024271 . C CA 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.3632;ERATE=0.0005;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70024421 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8645;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70024443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70024519 . GA G 217 PASS INDEL;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8379;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70024539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6826;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70024741 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6699;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70024772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3231;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0006;THETA=0.0006;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 70024899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9780;ERATE=0.0002;THETA=0.0030;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70024962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0172;AVGPOST=0.9993;RSQ=0.9811;ERATE=0.0003;THETA=0.0008;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70024968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0561;AVGPOST=0.9972;RSQ=0.9824;ERATE=0.0003;THETA=0.0005;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 70025011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0067;AVGPOST=0.9994;RSQ=0.9628;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70025217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8216;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70025348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.3202;AVGPOST=0.9959;RSQ=0.9940;ERATE=0.0010;THETA=0.0005;AC=699;AN=2184 GT:DS:GL:BD 0.32005495 0 1 70025443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.957;LDAF=0.0257;AVGPOST=0.9931;RSQ=0.9129;ERATE=0.0004;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70025493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0081;AVGPOST=0.9981;RSQ=0.9055;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70025544 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8015;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70025581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0026;AVGPOST=0.9969;RSQ=0.5966;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70025582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9977;RSQ=0.5291;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70025664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.4837;AVGPOST=0.9844;RSQ=0.9796;ERATE=0.0029;THETA=0.0002;AC=1060;AN=2184 GT:DS:GL:BD 0.48534799 0 1 70025676 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.635;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8845;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70025680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1683;AVGPOST=0.9991;RSQ=0.9973;ERATE=0.0003;THETA=0.0005;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 70025858 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70025865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9567;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70025892 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3443;AVGPOST=0.9980;RSQ=0.9970;ERATE=0.0006;THETA=0.0004;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 70026343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.761;LDAF=0.0060;AVGPOST=0.9973;RSQ=0.8335;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70026384 . AAT A 262 PASS INDEL;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7573;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70026430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6922;ERATE=0.0004;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70026471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0059;AVGPOST=0.9974;RSQ=0.8322;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70026473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70026552 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9848;ERATE=0.0002;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70026553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.7052;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70026564 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70026581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.905;BRSQ=0.764;LDAF=0.3482;AVGPOST=0.8840;RSQ=0.7502;ERATE=0.0690;THETA=0.0004;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 70026706 . TG T 13672 PASS INDEL;BAVGPOST=0.951;BRSQ=0.928;LDAF=0.4707;AVGPOST=0.9809;RSQ=0.9735;ERATE=0.0007;THETA=0.0003;AC=1042;AN=2184 GT:DS:GL:BD 0.47710621 0 1 70026722 . G GT 5267 PASS INDEL;BAVGPOST=0.917;BRSQ=0.750;LDAF=0.1612;AVGPOST=0.9125;RSQ=0.7945;ERATE=0.0166;THETA=0.0003;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 70026723 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.905;LDAF=0.4407;AVGPOST=0.9330;RSQ=0.9029;ERATE=0.0162;THETA=0.0007;AC=976;AN=2184 GT:DS:GL:BD 0.44688645 0 1 70026724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0029;AVGPOST=0.9964;RSQ=0.5128;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70026746 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0020;AVGPOST=0.9969;RSQ=0.4432;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70026877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.863;LDAF=0.0096;AVGPOST=0.9977;RSQ=0.9045;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70026974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0055;AVGPOST=0.9973;RSQ=0.8316;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70027000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6171;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70027023 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1249;AVGPOST=0.9989;RSQ=0.9959;ERATE=0.0003;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 70027109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8735;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70027143 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0211;AVGPOST=0.9968;RSQ=0.9482;ERATE=0.0002;THETA=0.0005;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70027174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4848;AVGPOST=0.9970;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=1062;AN=2184 GT:DS:GL:BD 0.48626372 0 1 70027203 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.7711;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70027261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7766;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70027304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0338;AVGPOST=0.9983;RSQ=0.9773;ERATE=0.0003;THETA=0.0004;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70027473 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0184;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0002;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70027617 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70027650 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1186;AVGPOST=0.9995;RSQ=0.9978;ERATE=0.0003;THETA=0.0035;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 70027682 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0018;AVGPOST=0.9997;RSQ=0.9323;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70027700 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70027764 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70027808 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1186;AVGPOST=0.9986;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 70027836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.718;LDAF=0.0046;AVGPOST=0.9963;RSQ=0.6791;ERATE=0.0011;THETA=0.0036;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70028134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9212;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70028269 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8185;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70028348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8037;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70028372 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0024;AVGPOST=0.9977;RSQ=0.6203;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70028494 . C CACTT 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.764;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3574;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70028742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70028750 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7125;ERATE=0.0002;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70028762 . GT G 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6541;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70028768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0181;AVGPOST=0.9995;RSQ=0.9877;ERATE=0.0002;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70028788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9991;RSQ=0.9587;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70028831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.955;LDAF=0.3213;AVGPOST=0.9936;RSQ=0.9907;ERATE=0.0006;THETA=0.0002;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 70028953 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0109;AVGPOST=0.9983;RSQ=0.9327;ERATE=0.0004;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70028974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6120;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70029087 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7759;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70029354 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5391;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70029520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8283;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70029521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5397;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70029596 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0052;AVGPOST=0.9973;RSQ=0.8085;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70029647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.932;LDAF=0.0225;AVGPOST=0.9988;RSQ=0.9733;ERATE=0.0002;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70029767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5492;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70029792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9072;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70029886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9461;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70029911 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0028;AVGPOST=0.9992;RSQ=0.8907;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70029924 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.7289;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70030018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5403;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70030058 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0260;AVGPOST=0.9987;RSQ=0.9806;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70030098 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4797;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70030115 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8269;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70030244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.651;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4532;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70030248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6360;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70030364 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8102;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70030448 . C CA 109 PASS INDEL;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7139;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70030466 . CAGA C 73 PASS INDEL;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6329;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70030493 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9373;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70030503 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.873;LDAF=0.2282;AVGPOST=0.9221;RSQ=0.8236;ERATE=0.0175;THETA=0.0005;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 70030557 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2412;AVGPOST=0.9944;RSQ=0.9885;ERATE=0.0009;THETA=0.0004;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 70030685 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0067;AVGPOST=0.9993;RSQ=0.9514;ERATE=0.0003;THETA=0.0008;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70030716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2214;AVGPOST=0.9989;RSQ=0.9972;ERATE=0.0004;THETA=0.0007;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 70030788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.865;LDAF=0.0106;AVGPOST=0.9973;RSQ=0.8955;ERATE=0.0002;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70030803 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0292;AVGPOST=0.9989;RSQ=0.9836;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70030813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70030930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.767;LDAF=0.0039;AVGPOST=0.9972;RSQ=0.6986;ERATE=0.0008;THETA=0.0039;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70030987 . G GAGTC 708 PASS INDEL;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7837;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70031002 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6819;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0700;AVGPOST=0.9986;RSQ=0.9928;ERATE=0.0003;THETA=0.0018;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 70031170 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0210;AVGPOST=0.9992;RSQ=0.9869;ERATE=0.0003;THETA=0.0004;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70031178 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.7050;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70031239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7058;ERATE=0.0006;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70031247 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.987;LDAF=0.2439;AVGPOST=0.9960;RSQ=0.9910;ERATE=0.0017;THETA=0.0006;AC=531;AN=2184 GT:DS:GL:BD 0.24313186 0 1 70031270 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3392;AVGPOST=0.9976;RSQ=0.9964;ERATE=0.0005;THETA=0.0003;AC=741;AN=2184 GT:DS:GL:BD 0.33928570 0 1 70031385 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7821;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70031386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031405 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3228;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0009;AC=706;AN=2184 GT:DS:GL:BD 0.32326007 0 1 70031574 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031601 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9602;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70031606 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7357;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70031654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0030;AVGPOST=0.9992;RSQ=0.9044;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70031703 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0031;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70031804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7386;ERATE=0.0002;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70031808 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70032067 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0002;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0054;AVGPOST=0.9978;RSQ=0.8411;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70032136 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.784;LDAF=0.0044;AVGPOST=0.9990;RSQ=0.9004;ERATE=0.0002;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70032169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.597;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4353;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032230 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0206;AVGPOST=0.9998;RSQ=0.9954;ERATE=0.0003;THETA=0.0007;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70032262 . TAC T 19 PASS INDEL;BAVGPOST=0.999;BRSQ=0.518;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8171;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70032491 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.4851;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032518 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6895;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0224;AVGPOST=0.9984;RSQ=0.9700;ERATE=0.0007;THETA=0.0007;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70032652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7874;ERATE=0.0002;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70032689 . A AG 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7315;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70032761 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.588;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4848;ERATE=0.0003;THETA=0.0036;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5469;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70032827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5790;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70033110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9549;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70033129 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5869;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70033144 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9989;RSQ=0.9554;ERATE=0.0002;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70033148 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0175;AVGPOST=0.9990;RSQ=0.9740;ERATE=0.0005;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70033329 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0083;AVGPOST=0.9992;RSQ=0.9636;ERATE=0.0002;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70033427 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6051;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70033530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70033561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.804;LDAF=0.0074;AVGPOST=0.9966;RSQ=0.8115;ERATE=0.0006;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70033562 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0754;AVGPOST=0.9984;RSQ=0.9921;ERATE=0.0005;THETA=0.0012;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70033577 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9203;ERATE=0.0002;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70033658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.771;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70033742 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7664;ERATE=0.0005;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70033810 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6271;ERATE=0.0005;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70033855 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.0686;AVGPOST=0.9985;RSQ=0.9916;ERATE=0.0004;THETA=0.0006;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70033861 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0004;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70033993 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0620;AVGPOST=0.9992;RSQ=0.9948;ERATE=0.0003;THETA=0.0008;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 70034031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70034117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70034156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70034166 . T TAA 54732 PASS INDEL;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8335;AVGPOST=0.9980;RSQ=0.9950;ERATE=0.0004;THETA=0.0006;AC=1822;AN=2184 GT:DS:GL:BD 0.83424908 1 1 70034227 . GT G 2427 PASS INDEL;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0137;AVGPOST=0.9997;RSQ=0.9894;ERATE=0.0002;THETA=0.0006;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70034349 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0093;AVGPOST=0.9989;RSQ=0.9593;ERATE=0.0002;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70034432 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.8140;AVGPOST=0.9991;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=1778;AN=2184 GT:DS:GL:BD 0.81410259 1 1 70034502 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7025;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70034539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8461;ERATE=0.0010;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70034595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0695;AVGPOST=0.9988;RSQ=0.9943;ERATE=0.0003;THETA=0.0003;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 70034627 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9880;ERATE=0.0002;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70034686 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0169;AVGPOST=0.9994;RSQ=0.9841;ERATE=0.0002;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70034773 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.7299;AVGPOST=0.9974;RSQ=0.9953;ERATE=0.0010;THETA=0.0007;AC=1595;AN=2184 GT:DS:GL:BD 0.73031133 1 1 70034823 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70034898 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0178;AVGPOST=0.9986;RSQ=0.9744;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70034919 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0580;AVGPOST=0.9989;RSQ=0.9919;ERATE=0.0003;THETA=0.0006;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 70034922 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9295;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70034955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70034969 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.811;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7925;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70035018 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0185;AVGPOST=0.9979;RSQ=0.9601;ERATE=0.0003;THETA=0.0007;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70035174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5929;AVGPOST=0.9963;RSQ=0.9945;ERATE=0.0007;THETA=0.0005;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 70035179 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5741;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70035185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0023;AVGPOST=0.9976;RSQ=0.6574;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70035226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9863;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70035348 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70035379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0056;AVGPOST=0.9992;RSQ=0.9323;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70035382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0653;AVGPOST=0.9995;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 70035531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0251;AVGPOST=0.9992;RSQ=0.9885;ERATE=0.0004;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 70035551 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70035694 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0091;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70035719 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70035806 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0923;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0005;AC=202;AN=2184 GT:DS:GL:BD 0.09249084 0 1 70035857 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70035989 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0567;AVGPOST=0.9998;RSQ=0.9980;ERATE=0.0003;THETA=0.0006;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 70036109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70036180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0599;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 70036349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8947;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70036385 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5468;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70036425 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7066;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70036643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70036649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5174;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70036766 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0832;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70036768 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70036776 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6868;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1500;AN=2184 GT:DS:GL:BD 0.68681318 1 1 70036815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0693;AVGPOST=0.9975;RSQ=0.9885;ERATE=0.0003;THETA=0.0019;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 70037002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7710;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70037105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9033;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70037114 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9590;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70037185 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0675;AVGPOST=0.9994;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 70037200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0693;AVGPOST=0.9994;RSQ=0.9955;ERATE=0.0003;THETA=0.0004;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70037298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70037351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70037352 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0691;AVGPOST=0.9998;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70037369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.8902;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70037434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9405;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70037512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0569;AVGPOST=0.9989;RSQ=0.9920;ERATE=0.0003;THETA=0.0007;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 70037566 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70037739 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7715;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70037826 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0667;AVGPOST=0.9997;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=146;AN=2184 GT:DS:GL:BD 0.06684982 0 1 70037827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70037868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8339;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70037917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9978;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70037944 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5888;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70038108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9717;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70038124 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0946;AVGPOST=0.9987;RSQ=0.9939;ERATE=0.0003;THETA=0.0004;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 70038243 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6800;AVGPOST=0.9971;RSQ=0.9948;ERATE=0.0007;THETA=0.0004;AC=1485;AN=2184 GT:DS:GL:BD 0.67994505 1 1 70038362 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0696;AVGPOST=0.9985;RSQ=0.9923;ERATE=0.0003;THETA=0.0005;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70038407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0252;AVGPOST=0.9989;RSQ=0.9836;ERATE=0.0003;THETA=0.0045;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 70038410 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.6841;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70038505 . C CT 59 PASS INDEL;BAVGPOST=0.991;BRSQ=0.590;LDAF=0.0168;AVGPOST=0.9777;RSQ=0.4873;ERATE=0.0033;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70038861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.978;LDAF=0.0621;AVGPOST=0.9987;RSQ=0.9909;ERATE=0.0003;THETA=0.0028;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 70038905 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4506;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70038913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0592;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0004;THETA=0.0037;AC=128;AN=2184 GT:DS:GL:BD 0.05860806 0 1 70039095 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.7387;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70039103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0542;AVGPOST=0.9988;RSQ=0.9907;ERATE=0.0004;THETA=0.0009;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 70039109 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7823;ERATE=0.0003;THETA=0.0162;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70039145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.983;LDAF=0.5565;AVGPOST=0.9816;RSQ=0.9730;ERATE=0.0045;THETA=0.0004;AC=1214;AN=2184 GT:DS:GL:BD 0.55586082 1 1 70039385 . CT C 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6203;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70039480 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9015;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70039484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9463;ERATE=0.0003;THETA=0.0040;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70039543 . A ATT 23 PASS INDEL;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5607;ERATE=0.0003;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70039568 rs3039821 TTTG T 27597 PASS INDEL;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.1827;AVGPOST=0.9766;RSQ=0.9456;ERATE=0.0080;THETA=0.0014;AC=391;AN=2184 GT:DS:GL:BD 0.17902930 0 1 70039581 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0045;AVGPOST=0.9990;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70039650 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0390;AVGPOST=0.9962;RSQ=0.9635;ERATE=0.0008;THETA=0.0005;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 70039658 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.980;LDAF=0.7439;AVGPOST=0.9883;RSQ=0.9765;ERATE=0.0027;THETA=0.0015;AC=1627;AN=2184 GT:DS:GL:BD 0.74496335 1 1 70039679 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0083;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70039761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.648;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6940;ERATE=0.0003;THETA=0.0027;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70039767 rs34588099 TGTGA T 57331 PASS INDEL;BAVGPOST=0.969;BRSQ=0.952;LDAF=0.5625;AVGPOST=0.9845;RSQ=0.9764;ERATE=0.0017;THETA=0.0007;AC=1234;AN=2184 GT:DS:GL:BD 0.56501830 1 1 70039789 rs10555129 GT G 5097 PASS INDEL;BAVGPOST=0.861;BRSQ=0.778;LDAF=0.4358;AVGPOST=0.8193;RSQ=0.7512;ERATE=0.0372;THETA=0.0006;AC=1002;AN=2184 GT:DS:GL:BD 0.45879120 0 1 70039794 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5527;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 70039877 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7986;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70039902 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70039969 . CTG C 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6666;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70040001 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70040150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70040268 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.938;LDAF=0.0148;AVGPOST=0.9969;RSQ=0.9194;ERATE=0.0002;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70040362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.9384;AVGPOST=0.9989;RSQ=0.9932;ERATE=0.0003;THETA=0.0004;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 70040387 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70040469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6942;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70040473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9663;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70040527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9592;ERATE=0.0002;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70040556 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6891;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70040616 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0215;AVGPOST=0.9989;RSQ=0.9783;ERATE=0.0002;THETA=0.0002;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70040634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6061;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70040804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1548;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 70040884 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0089;AVGPOST=0.9990;RSQ=0.9564;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70040891 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0396;AVGPOST=0.9994;RSQ=0.9942;ERATE=0.0002;THETA=0.0002;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 70040977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5559;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70040993 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70041152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70041153 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1552;AVGPOST=0.9992;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 70041193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5672;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70041316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8335;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70041434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70041501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3894;AVGPOST=0.9984;RSQ=0.9973;ERATE=0.0004;THETA=0.0007;AC=849;AN=2184 GT:DS:GL:BD 0.38873628 0 1 70041506 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0196;AVGPOST=0.9998;RSQ=0.9959;ERATE=0.0002;THETA=0.0002;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70041567 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1553;AVGPOST=0.9995;RSQ=0.9984;ERATE=0.0004;THETA=0.0002;AC=340;AN=2184 GT:DS:GL:BD 0.15567766 0 1 70041643 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0011;AVGPOST=0.9984;RSQ=0.4815;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70041886 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9595;ERATE=0.0002;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70041902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7440;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70042087 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7703;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70042142 . G GT 79 PASS INDEL;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0023;AVGPOST=0.9966;RSQ=0.4514;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70042244 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70042329 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9877;ERATE=0.0002;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70042390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8427;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70042415 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7404;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70042434 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1647;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 70042525 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0056;AVGPOST=0.9964;RSQ=0.7675;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70042823 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1644;AVGPOST=0.9989;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 70042830 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5531;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=1209;AN=2184 GT:DS:GL:BD 0.55357140 1 1 70042953 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0204;AVGPOST=0.9987;RSQ=0.9809;ERATE=0.0002;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70042977 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3887;AVGPOST=0.9987;RSQ=0.9977;ERATE=0.0005;THETA=0.0004;AC=848;AN=2184 GT:DS:GL:BD 0.38827839 0 1 70043003 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6534;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70043021 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6670;ERATE=0.0002;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70043025 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6272;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70043105 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0002;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70043245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8120;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70043263 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.901;LDAF=0.0205;AVGPOST=0.9964;RSQ=0.9361;ERATE=0.0004;THETA=0.0003;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70043287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0385;AVGPOST=0.9978;RSQ=0.9769;ERATE=0.0004;THETA=0.0002;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 70043399 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.956;LDAF=0.0384;AVGPOST=0.9979;RSQ=0.9782;ERATE=0.0003;THETA=0.0004;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 70043400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1647;AVGPOST=0.9989;RSQ=0.9969;ERATE=0.0002;THETA=0.0002;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 70043461 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7788;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70043519 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70043588 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70043729 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1565;AVGPOST=0.9975;RSQ=0.9933;ERATE=0.0005;THETA=0.0004;AC=341;AN=2184 GT:DS:GL:BD 0.15613553 0 1 70043807 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8843;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70043915 . GCTCA G 1164 PASS INDEL;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0064;AVGPOST=0.9982;RSQ=0.9066;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70043916 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70044031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6529;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70044202 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.8990;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70044239 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9467;ERATE=0.0003;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70044281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.8890;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70044428 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0056;AVGPOST=0.9988;RSQ=0.9290;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70044463 . T TG 5 PASS INDEL;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0037;AVGPOST=0.9956;RSQ=0.5276;ERATE=0.0005;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70044645 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8915;ERATE=0.0005;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70044646 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9989;RSQ=0.9714;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70044808 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0072;AVGPOST=0.9984;RSQ=0.9182;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70044829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70044894 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0330;AVGPOST=0.9983;RSQ=0.9794;ERATE=0.0006;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 70044981 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0631;AVGPOST=0.9999;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 70045002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70045249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1531;AVGPOST=0.9979;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 70045343 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.8054;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70045360 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0138;AVGPOST=0.9999;RSQ=0.9968;ERATE=0.0003;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70045382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8304;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70045394 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70045518 . AG A 346 PASS INDEL;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.6924;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70045598 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0029;AVGPOST=0.9961;RSQ=0.5244;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70045733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0801;AVGPOST=0.9999;RSQ=0.9993;ERATE=0.0003;THETA=0.0008;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 70045900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6952;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70045923 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.860;LDAF=0.0044;AVGPOST=0.9982;RSQ=0.8618;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70045926 . CAA C 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.760;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5844;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0093;AVGPOST=0.9986;RSQ=0.9491;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70046031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046196 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0473;AVGPOST=0.9994;RSQ=0.9946;ERATE=0.0003;THETA=0.0008;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70046400 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0306;AVGPOST=0.9992;RSQ=0.9908;ERATE=0.0003;THETA=0.0005;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70046412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5235;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046618 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.930;LDAF=0.1161;AVGPOST=0.9771;RSQ=0.9119;ERATE=0.0004;THETA=0.0002;AC=244;AN=2184 GT:DS:GL:BD 0.11172161 0 1 70046701 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0473;AVGPOST=0.9993;RSQ=0.9933;ERATE=0.0004;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70046749 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0024;AVGPOST=0.9963;RSQ=0.3430;ERATE=0.0009;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70046828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5693;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70046841 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4493;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046934 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5044;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70046965 rs34816591 A AAAG 91 PASS INDEL;BAVGPOST=0.994;BRSQ=0.572;LDAF=0.0081;AVGPOST=0.9911;RSQ=0.5458;ERATE=0.0012;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70047001 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.7010;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70047272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0669;AVGPOST=0.9981;RSQ=0.9886;ERATE=0.0003;THETA=0.0004;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 70047329 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70047340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8634;ERATE=0.0006;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70047343 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.926;LDAF=0.0062;AVGPOST=0.9990;RSQ=0.9434;ERATE=0.0003;THETA=0.0023;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70047365 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0327;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 70047394 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0812;AVGPOST=0.9987;RSQ=0.9946;ERATE=0.0004;THETA=0.0007;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 70047475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9406;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70047495 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0330;AVGPOST=0.9987;RSQ=0.9836;ERATE=0.0003;THETA=0.0005;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 70047505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.962;LDAF=0.0329;AVGPOST=0.9988;RSQ=0.9858;ERATE=0.0004;THETA=0.0006;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 70047548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0959;AVGPOST=0.9991;RSQ=0.9963;ERATE=0.0003;THETA=0.0006;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 70047623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6929;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70047682 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0960;AVGPOST=0.9997;RSQ=0.9985;ERATE=0.0003;THETA=0.0008;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 70047771 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9502;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70047821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70047834 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7752;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70047845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70047852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0019;AVGPOST=0.9993;RSQ=0.8447;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70047946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70048064 . GT G 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70048067 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0964;AVGPOST=0.9973;RSQ=0.9911;ERATE=0.0003;THETA=0.0005;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 70048169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70048177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0634;AVGPOST=0.9980;RSQ=0.9894;ERATE=0.0005;THETA=0.0004;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 70048178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0082;AVGPOST=0.9987;RSQ=0.9462;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70048260 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70048261 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.904;LDAF=0.0208;AVGPOST=0.9941;RSQ=0.8883;ERATE=0.0003;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 70048430 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0088;AVGPOST=0.9995;RSQ=0.9753;ERATE=0.0004;THETA=0.0034;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70048449 . C CT 41 PASS INDEL;BAVGPOST=0.994;BRSQ=0.540;LDAF=0.0117;AVGPOST=0.9831;RSQ=0.4607;ERATE=0.0031;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70048526 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0954;AVGPOST=0.9990;RSQ=0.9957;ERATE=0.0003;THETA=0.0007;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 70048627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.827;LDAF=0.0059;AVGPOST=0.9977;RSQ=0.8415;ERATE=0.0006;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70048754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9822;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70048801 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5548;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70048996 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.6983;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70049003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9740;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70049117 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9753;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70049213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70049359 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70049417 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.984;LDAF=0.2531;AVGPOST=0.9894;RSQ=0.9796;ERATE=0.0006;THETA=0.0005;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 70049531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0009;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70049573 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.850;LDAF=0.0116;AVGPOST=0.9956;RSQ=0.8414;ERATE=0.0004;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70049603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0040;AVGPOST=0.9986;RSQ=0.8742;ERATE=0.0003;THETA=0.0010;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70049663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7245;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70049837 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0239;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 70049861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1068;AVGPOST=0.9991;RSQ=0.9958;ERATE=0.0004;THETA=0.0003;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 70050042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5880;AVGPOST=0.9961;RSQ=0.9942;ERATE=0.0010;THETA=0.0005;AC=1286;AN=2184 GT:DS:GL:BD 0.58882785 1 1 70050076 . TA T 61 PASS INDEL;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5652;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70050089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7195;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70050135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1100;AVGPOST=0.9995;RSQ=0.9977;ERATE=0.0003;THETA=0.0010;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 70050156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0031;AVGPOST=0.9977;RSQ=0.7297;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70050166 . CAG C 70 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6894;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70050306 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0377;AVGPOST=0.9993;RSQ=0.9926;ERATE=0.0003;THETA=0.0007;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70050453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0006;AVGPOST=0.9991;RSQ=0.4271;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70050542 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.957;LDAF=0.0231;AVGPOST=0.9987;RSQ=0.9777;ERATE=0.0004;THETA=0.0016;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70050597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0659;AVGPOST=0.9945;RSQ=0.9699;ERATE=0.0004;THETA=0.0006;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 70050618 . CG C 2101 PASS INDEL;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0349;AVGPOST=0.9981;RSQ=0.9789;ERATE=0.0004;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70050721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.620;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6740;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70050833 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.476;LDAF=0.0076;AVGPOST=0.9896;RSQ=0.4749;ERATE=0.0013;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70050849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.899;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8625;ERATE=0.0004;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70050912 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.531;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70051001 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.756;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5506;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70051019 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4301;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051060 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0087;AVGPOST=0.9986;RSQ=0.9336;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70051109 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5181;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051138 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9978;RSQ=0.9417;ERATE=0.0004;THETA=0.0009;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70051152 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.564;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6663;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051303 . A AATTT 465 PASS INDEL;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0031;AVGPOST=0.9994;RSQ=0.9337;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70051338 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0553;AVGPOST=0.9998;RSQ=0.9981;ERATE=0.0003;THETA=0.0003;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70051441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8151;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70051476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7821;AVGPOST=0.9982;RSQ=0.9957;ERATE=0.0004;THETA=0.0004;AC=1710;AN=2184 GT:DS:GL:BD 0.78296703 1 1 70051503 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.4336;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9258;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70051642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0132;AVGPOST=0.9995;RSQ=0.9832;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70051723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051807 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70051899 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.900;LDAF=0.0177;AVGPOST=0.9932;RSQ=0.8554;ERATE=0.0004;THETA=0.0007;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70051941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0554;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0009;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70052066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70052078 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7787;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70052161 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.796;LDAF=0.0038;AVGPOST=0.9982;RSQ=0.8211;ERATE=0.0005;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70052311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70052467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9997;RSQ=0.9860;ERATE=0.0003;THETA=0.0008;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70052507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5907;AVGPOST=0.9952;RSQ=0.9924;ERATE=0.0011;THETA=0.0003;AC=1289;AN=2184 GT:DS:GL:BD 0.59020144 1 1 70052546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0557;AVGPOST=0.9990;RSQ=0.9926;ERATE=0.0004;THETA=0.0006;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70052601 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8651;ERATE=0.0004;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70053030 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.656;LDAF=0.0041;AVGPOST=0.9961;RSQ=0.6549;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70053270 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0144;AVGPOST=0.9977;RSQ=0.9362;ERATE=0.0004;THETA=0.0007;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70053332 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70053336 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5618;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70053436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7464;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70053707 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70053713 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5605;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70053829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7280;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70054002 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1119;AVGPOST=0.9991;RSQ=0.9959;ERATE=0.0004;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 70054173 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.778;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6029;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70054189 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1104;AVGPOST=0.9989;RSQ=0.9950;ERATE=0.0005;THETA=0.0005;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 70054207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0048;AVGPOST=0.9991;RSQ=0.9331;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70054246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7737;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70054280 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8071;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70054291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6998;AVGPOST=0.9986;RSQ=0.9975;ERATE=0.0004;THETA=0.0007;AC=1528;AN=2184 GT:DS:GL:BD 0.69963372 1 1 70054360 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70054468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8713;ERATE=0.0005;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70054606 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70054678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0707;AVGPOST=0.9988;RSQ=0.9923;ERATE=0.0004;THETA=0.0007;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70054731 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.538;LDAF=0.0024;AVGPOST=0.9960;RSQ=0.3430;ERATE=0.0008;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70054868 . A ATG 925 PASS INDEL;BAVGPOST=0.951;BRSQ=0.686;LDAF=0.0733;AVGPOST=0.9630;RSQ=0.7998;ERATE=0.0017;THETA=0.0009;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 70054982 . A ATACT 2136 PASS INDEL;BAVGPOST=0.948;BRSQ=0.609;LDAF=0.0778;AVGPOST=0.9617;RSQ=0.8041;ERATE=0.0011;THETA=0.0007;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 70054992 . A ATG 2375 PASS INDEL;BAVGPOST=0.992;BRSQ=0.933;LDAF=0.0559;AVGPOST=0.9951;RSQ=0.9630;ERATE=0.0008;THETA=0.0005;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 70055006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.972;BRSQ=0.964;LDAF=0.5166;AVGPOST=0.9697;RSQ=0.9601;ERATE=0.0015;THETA=0.0009;AC=1132;AN=2184 GT:DS:GL:BD 0.51831502 1 1 70055040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8566;ERATE=0.0005;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70055150 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5344;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70055157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70055164 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6455;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70055311 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9852;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70055484 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9733;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70055591 . G GT 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4616;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70055650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9489;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70055672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5826;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70055708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9211;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70055743 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7328;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70055838 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.713;LDAF=0.0030;AVGPOST=0.9967;RSQ=0.5732;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70056207 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9620;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70056208 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5372;ERATE=0.0004;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70056263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3767;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0006;THETA=0.0003;AC=823;AN=2184 GT:DS:GL:BD 0.37683150 0 1 70056320 . A AT 584 PASS INDEL;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0063;AVGPOST=0.9965;RSQ=0.7823;ERATE=0.0007;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70056668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70056797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.595;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70056941 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0025;AVGPOST=0.9984;RSQ=0.7433;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70057227 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7429;AVGPOST=0.9963;RSQ=0.9923;ERATE=0.0007;THETA=0.0006;AC=1625;AN=2184 GT:DS:GL:BD 0.74404764 1 1 70057348 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0048;AVGPOST=0.9985;RSQ=0.8891;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70057374 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8765;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70057437 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70057503 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0226;AVGPOST=0.9968;RSQ=0.9437;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70057509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0116;AVGPOST=0.9993;RSQ=0.9714;ERATE=0.0004;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70057513 . G GTGGC 486 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9970;RSQ=0.8544;ERATE=0.0006;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70057598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0084;AVGPOST=0.9981;RSQ=0.9032;ERATE=0.0006;THETA=0.0011;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70057787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0055;AVGPOST=0.9981;RSQ=0.8554;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70057844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0129;AVGPOST=0.9931;RSQ=0.7957;ERATE=0.0006;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70057898 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6746;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70058000 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70058033 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.7308;AVGPOST=0.9973;RSQ=0.9946;ERATE=0.0003;THETA=0.0013;AC=1596;AN=2184 GT:DS:GL:BD 0.73076922 1 1 70058034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70058036 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0020;AVGPOST=0.9974;RSQ=0.5263;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70058059 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0028;AVGPOST=0.9991;RSQ=0.8838;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70058088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70058089 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70058174 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.857;LDAF=0.0090;AVGPOST=0.9972;RSQ=0.8701;ERATE=0.0013;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70058351 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.361;LDAF=0.0137;AVGPOST=0.9924;RSQ=0.7751;ERATE=0.0006;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70058432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4342;AVGPOST=0.9869;RSQ=0.9809;ERATE=0.0008;THETA=0.0006;AC=947;AN=2184 GT:DS:GL:BD 0.43360806 0 1 70058473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0085;AVGPOST=0.9973;RSQ=0.8627;ERATE=0.0005;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70058505 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.969;LDAF=0.0556;AVGPOST=0.9956;RSQ=0.9670;ERATE=0.0006;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70058700 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.416;LDAF=0.0040;AVGPOST=0.9967;RSQ=0.6650;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70058701 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.938;BRSQ=0.891;LDAF=0.4301;AVGPOST=0.8852;RSQ=0.8216;ERATE=0.0091;THETA=0.0004;AC=943;AN=2184 GT:DS:GL:BD 0.43177655 0 1 70058778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.559;LDAF=0.9450;AVGPOST=0.9547;RSQ=0.6539;ERATE=0.0018;THETA=0.0006;AC=2090;AN=2184 GT:DS:GL:BD 0.95695972 1 1 70058803 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9018;ERATE=0.0007;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70058948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70058956 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0371;AVGPOST=0.9998;RSQ=0.9971;ERATE=0.0003;THETA=0.0004;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 70059051 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.789;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8590;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70059107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.733;LDAF=0.0045;AVGPOST=0.9976;RSQ=0.8010;ERATE=0.0005;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70059250 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0125;AVGPOST=0.9979;RSQ=0.9390;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70059317 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70059346 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8359;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70059390 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.928;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.9001;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70059805 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7251;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70059816 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70059995 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70060016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0515;AVGPOST=0.9993;RSQ=0.9933;ERATE=0.0004;THETA=0.0006;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 70060053 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.758;LDAF=0.0043;AVGPOST=0.9968;RSQ=0.6950;ERATE=0.0010;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70060092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0849;AVGPOST=0.9978;RSQ=0.9885;ERATE=0.0005;THETA=0.0002;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 70060257 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7546;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70060307 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8542;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70060335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3968;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0003;THETA=0.0003;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 70060392 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0028;AVGPOST=0.9984;RSQ=0.7585;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70060468 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4951;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70060503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0169;AVGPOST=0.9971;RSQ=0.9363;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70060583 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.1880;AVGPOST=0.9966;RSQ=0.9907;ERATE=0.0007;THETA=0.0002;AC=411;AN=2184 GT:DS:GL:BD 0.18818681 0 1 70060643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6265;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70060646 . A AG 1359 PASS INDEL;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0178;AVGPOST=0.9973;RSQ=0.9346;ERATE=0.0005;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70060790 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0371;AVGPOST=0.9998;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 70060865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.892;LDAF=0.0269;AVGPOST=0.9942;RSQ=0.9085;ERATE=0.0005;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70060956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0763;AVGPOST=0.9988;RSQ=0.9941;ERATE=0.0003;THETA=0.0003;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70060973 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70061132 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9811;ERATE=0.0003;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70061247 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0757;AVGPOST=0.9993;RSQ=0.9955;ERATE=0.0004;THETA=0.0006;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 70061435 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9443;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70061503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6599;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70061587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7701;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70061661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0056;AVGPOST=0.9982;RSQ=0.8879;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70061741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5623;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70061802 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.6604;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70061816 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9995;RSQ=0.9739;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70061921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0122;AVGPOST=0.9990;RSQ=0.9681;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70061928 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2593;AVGPOST=0.9992;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=567;AN=2184 GT:DS:GL:BD 0.25961539 0 1 70061929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70061950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062029 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0160;AVGPOST=0.9988;RSQ=0.9719;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70062031 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062062 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2604;AVGPOST=0.9989;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 70062256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0071;AVGPOST=0.9989;RSQ=0.9473;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70062284 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6907;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062291 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.6116;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062311 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8015;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70062321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7527;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70062391 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9035;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70062484 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0354;AVGPOST=0.9960;RSQ=0.9551;ERATE=0.0004;THETA=0.0002;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70062515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062770 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8400;ERATE=0.0010;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70062799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8084;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70062914 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5785;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70062925 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0692;AVGPOST=0.9987;RSQ=0.9922;ERATE=0.0004;THETA=0.0009;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 70062927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9988;RSQ=0.8721;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70063113 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70063147 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6493;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70063172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8769;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70063186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.5671;AVGPOST=0.9930;RSQ=0.9895;ERATE=0.0025;THETA=0.0002;AC=1236;AN=2184 GT:DS:GL:BD 0.56593406 1 1 70063209 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70063311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0003;THETA=0.0066;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70063377 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70063467 . T TC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0018;AVGPOST=0.9975;RSQ=0.4377;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70063562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70063590 . CT C 1461 PASS INDEL;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0091;AVGPOST=0.9990;RSQ=0.9511;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70063610 . A AT 1278 PASS INDEL;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0088;AVGPOST=0.9985;RSQ=0.9281;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70063651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0184;AVGPOST=0.9980;RSQ=0.9626;ERATE=0.0003;THETA=0.0007;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70063690 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0037;AVGPOST=0.9986;RSQ=0.8459;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70063863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2602;AVGPOST=0.9995;RSQ=0.9987;ERATE=0.0003;THETA=0.0003;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 70063937 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2578;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 70064121 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0549;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0007;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70064200 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9319;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70064544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7365;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70064597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9571;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70064657 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6420;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70064726 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70064733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8434;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70064834 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70064900 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0008;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70064971 . CTT C 931 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0074;AVGPOST=0.9995;RSQ=0.9737;ERATE=0.0003;THETA=0.0009;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70065043 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70065191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.715;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6073;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70065236 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9092;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70065237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1461;AVGPOST=0.9987;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 70065463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1461;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=318;AN=2184 GT:DS:GL:BD 0.14560440 0 1 70065471 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5992;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70065551 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0004;AVGPOST=0.9998;RSQ=0.7557;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70065578 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0056;AVGPOST=0.9987;RSQ=0.9079;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70065608 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70065699 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4819;AVGPOST=0.9968;RSQ=0.9949;ERATE=0.0009;THETA=0.0008;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 70065901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0015;AVGPOST=0.9993;RSQ=0.7827;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70065943 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9541;ERATE=0.0003;THETA=0.0014;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70065948 rs10715347 CT C 28663 PASS INDEL;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.3474;AVGPOST=0.9941;RSQ=0.9895;ERATE=0.0006;THETA=0.0005;AC=759;AN=2184 GT:DS:GL:BD 0.34752747 0 1 70065993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70066043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9849;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70066307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70066379 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70066414 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70066478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70066481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70066496 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0105;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70066503 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4874;AVGPOST=0.9992;RSQ=0.9989;ERATE=0.0003;THETA=0.0024;AC=1065;AN=2184 GT:DS:GL:BD 0.48763737 0 1 70066689 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0107;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0004;THETA=0.0019;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70066714 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0198;AVGPOST=0.9995;RSQ=0.9904;ERATE=0.0003;THETA=0.0061;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70066728 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0003;THETA=0.0015;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70066741 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0090;AVGPOST=0.9992;RSQ=0.9716;ERATE=0.0003;THETA=0.0027;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70066835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.6603;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=1441;AN=2184 GT:DS:GL:BD 0.65979856 1 1 70066925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70066951 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8509;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70067064 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9826;ERATE=0.0003;THETA=0.0027;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70067097 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5747;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70067119 . A AT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6421;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70067269 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0003;THETA=0.0035;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70067297 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0034;AVGPOST=0.9963;RSQ=0.5565;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70067355 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5370;ERATE=0.0005;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70067370 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4487;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70067371 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.672;LDAF=0.0337;AVGPOST=0.9663;RSQ=0.5984;ERATE=0.0123;THETA=0.0024;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70067402 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8632;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70067421 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0334;AVGPOST=0.9952;RSQ=0.9407;ERATE=0.0009;THETA=0.0011;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70067475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.979;LDAF=0.0224;AVGPOST=0.9974;RSQ=0.9528;ERATE=0.0005;THETA=0.0014;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70067510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.975;LDAF=0.0343;AVGPOST=0.9979;RSQ=0.9776;ERATE=0.0004;THETA=0.0015;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70067530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5808;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70067611 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.4711;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70067654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0335;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70067656 . A AT 48 PASS INDEL;BAVGPOST=0.988;BRSQ=0.531;LDAF=0.0246;AVGPOST=0.9680;RSQ=0.4702;ERATE=0.0072;THETA=0.0007;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70067755 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9550;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70067769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.906;LDAF=0.0091;AVGPOST=0.9971;RSQ=0.8770;ERATE=0.0007;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70068002 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0335;AVGPOST=0.9998;RSQ=0.9969;ERATE=0.0003;THETA=0.0008;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70068057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2656;AVGPOST=0.9960;RSQ=0.9921;ERATE=0.0009;THETA=0.0012;AC=582;AN=2184 GT:DS:GL:BD 0.26648352 0 1 70068100 . CT C 1267 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0084;AVGPOST=0.9996;RSQ=0.9764;ERATE=0.0004;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70068225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0426;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0008;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70068229 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6562;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70068282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0428;AVGPOST=0.9995;RSQ=0.9940;ERATE=0.0003;THETA=0.0006;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70068307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6106;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70068433 . G GTGCCATA 643 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70068612 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0090;AVGPOST=0.9980;RSQ=0.9075;ERATE=0.0008;THETA=0.0018;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70068669 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0024;AVGPOST=0.9996;RSQ=0.9275;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70068808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6746;ERATE=0.0003;THETA=0.0022;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70068818 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8889;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70068822 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70068887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7372;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70068929 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70069240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.6004;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70069256 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0373;AVGPOST=0.9992;RSQ=0.9922;ERATE=0.0003;THETA=0.0007;AC=81;AN=2184 GT:DS:GL:BD 0.03708791 0 1 70069322 . TG T 85 PASS INDEL;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6826;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70069396 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4881;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70069409 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.980;LDAF=0.0366;AVGPOST=0.9995;RSQ=0.9937;ERATE=0.0003;THETA=0.0004;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70069428 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.890;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8371;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70069579 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9075;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70069702 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0511;AVGPOST=0.9969;RSQ=0.9788;ERATE=0.0003;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 70069731 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.957;LDAF=0.0442;AVGPOST=0.9968;RSQ=0.9743;ERATE=0.0003;THETA=0.0007;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 70069810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.2833;AVGPOST=0.9958;RSQ=0.9917;ERATE=0.0007;THETA=0.0011;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 70069876 rs68030389 AG A 16315 PASS INDEL;BAVGPOST=0.992;BRSQ=0.977;LDAF=0.1930;AVGPOST=0.9961;RSQ=0.9898;ERATE=0.0005;THETA=0.0031;AC=421;AN=2184 GT:DS:GL:BD 0.19276556 0 1 70069916 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.881;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9510;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70069930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0080;AVGPOST=0.9956;RSQ=0.7828;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70070013 . TTTTG T 45 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70070094 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6610;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70070523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.6150;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70070524 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0088;AVGPOST=0.9994;RSQ=0.9681;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70070527 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9408;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70070528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70070658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8756;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70070663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.808;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6481;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70070729 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=0.9954;RSQ=0.5260;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70070755 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0236;AVGPOST=0.9984;RSQ=0.9729;ERATE=0.0003;THETA=0.0003;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70070933 . CA C 423 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9995;RSQ=0.9546;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70071015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4401;AVGPOST=0.9976;RSQ=0.9965;ERATE=0.0006;THETA=0.0002;AC=961;AN=2184 GT:DS:GL:BD 0.44001833 0 1 70071099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70071169 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70071214 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7175;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70071251 . GT G 91 PASS INDEL;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0021;AVGPOST=0.9983;RSQ=0.6452;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70071356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.4388;AVGPOST=0.9951;RSQ=0.9933;ERATE=0.0007;THETA=0.0003;AC=962;AN=2184 GT:DS:GL:BD 0.44047618 0 1 70071407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0085;AVGPOST=0.9992;RSQ=0.9598;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70071416 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6193;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70071436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.4154;AVGPOST=0.9988;RSQ=0.9981;ERATE=0.0004;THETA=0.0004;AC=907;AN=2184 GT:DS:GL:BD 0.41529304 0 1 70071466 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6221;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70071528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70071584 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4396;AVGPOST=0.9971;RSQ=0.9952;ERATE=0.0007;THETA=0.0007;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70071598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.565;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5563;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70071601 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7001;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70071618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.677;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70071772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70071791 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70071982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5207;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70072025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9999;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70072038 . CTCTT C 718 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9061;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70072046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4407;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70072139 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.7175;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70072182 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70072191 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9998;RSQ=0.9908;ERATE=0.0003;THETA=0.0009;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70072481 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4404;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0003;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70072509 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70072514 rs68129700 GCTTCCTACAT G 74843 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.4384;AVGPOST=0.9856;RSQ=0.9783;ERATE=0.0028;THETA=0.0005;AC=959;AN=2184 GT:DS:GL:BD 0.43910256 0 1 70072554 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0250;AVGPOST=0.9989;RSQ=0.9821;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 70072626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0256;AVGPOST=0.9999;RSQ=0.9977;ERATE=0.0003;THETA=0.0005;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70072638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70072639 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8108;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70072669 . T TC 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6242;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70072733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5166;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70072828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6633;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70072830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4428;AVGPOST=0.9965;RSQ=0.9948;ERATE=0.0008;THETA=0.0008;AC=968;AN=2184 GT:DS:GL:BD 0.44322345 0 1 70072845 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.6051;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70072846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.891;LDAF=0.0045;AVGPOST=0.9982;RSQ=0.8598;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70072870 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7124;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073008 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5736;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073091 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.4396;AVGPOST=0.9981;RSQ=0.9976;ERATE=0.0003;THETA=0.0001;AC=961;AN=2184 GT:DS:GL:BD 0.44001833 0 1 70073100 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6523;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073125 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7304;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9682;ERATE=0.0007;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70073272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.7116;AVGPOST=0.9979;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=1557;AN=2184 GT:DS:GL:BD 0.71291208 1 1 70073288 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0035;AVGPOST=0.9990;RSQ=0.8836;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70073296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0143;AVGPOST=0.9982;RSQ=0.9586;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70073368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.967;BRSQ=0.941;LDAF=0.4224;AVGPOST=0.9707;RSQ=0.9578;ERATE=0.0013;THETA=0.0003;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70073582 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.611;LDAF=0.0034;AVGPOST=0.9963;RSQ=0.5764;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70073664 . CT C 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.728;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5451;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073710 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6524;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70073711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0048;AVGPOST=0.9973;RSQ=0.7995;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70073712 . G GA 652 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9991;RSQ=0.9412;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70073732 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4405;AVGPOST=0.9986;RSQ=0.9976;ERATE=0.0004;THETA=0.0006;AC=963;AN=2184 GT:DS:GL:BD 0.44093406 0 1 70073736 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.848;LDAF=0.0059;AVGPOST=0.9988;RSQ=0.9138;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70073763 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5065;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.947;LDAF=0.0215;AVGPOST=0.9955;RSQ=0.9219;ERATE=0.0005;THETA=0.0035;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70073805 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4624;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70073989 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70074005 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0024;AVGPOST=0.9975;RSQ=0.6106;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70074120 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5244;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70074242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.803;LDAF=0.0051;AVGPOST=0.9980;RSQ=0.8334;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70074307 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70074517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0204;AVGPOST=0.9983;RSQ=0.9647;ERATE=0.0004;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70074675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.946;LDAF=0.0570;AVGPOST=0.9942;RSQ=0.9656;ERATE=0.0008;THETA=0.0004;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 70074690 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.990;LDAF=0.3781;AVGPOST=0.9904;RSQ=0.9858;ERATE=0.0011;THETA=0.0003;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 70074691 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.813;LDAF=0.0120;AVGPOST=0.9935;RSQ=0.7900;ERATE=0.0009;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70074719 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0104;AVGPOST=0.9975;RSQ=0.9107;ERATE=0.0004;THETA=0.0018;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70074747 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.824;LDAF=0.0088;AVGPOST=0.9987;RSQ=0.9364;ERATE=0.0005;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70074845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.741;LDAF=0.0161;AVGPOST=0.9892;RSQ=0.7363;ERATE=0.0014;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70074849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.694;LDAF=0.0026;AVGPOST=0.9974;RSQ=0.5887;ERATE=0.0007;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70074882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5416;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70075019 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9628;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70075062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70075104 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9687;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70075255 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8978;ERATE=0.0003;THETA=0.0033;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70075325 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8725;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70075393 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0397;AVGPOST=0.9973;RSQ=0.9742;ERATE=0.0006;THETA=0.0003;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 70075560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70075788 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9854;ERATE=0.0004;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70075856 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0310;AVGPOST=0.9994;RSQ=0.9918;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70075892 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4182;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=915;AN=2184 GT:DS:GL:BD 0.41895604 0 1 70075924 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70075993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9717;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70076027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7671;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70076075 . GA G 46 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7121;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70076084 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6006;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9110;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70076186 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.6337;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70076336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6841;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076354 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8805;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70076395 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9996;RSQ=0.9675;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70076470 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5993;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076524 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0075;AVGPOST=0.9994;RSQ=0.9635;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70076600 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8653;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70076628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076730 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70076877 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0053;AVGPOST=0.9989;RSQ=0.9264;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70076884 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6230;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076908 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5892;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70076943 . AG A 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4813;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70077042 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8082;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70077085 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70077105 rs55803112 T TA 135 PASS INDEL;BAVGPOST=0.982;BRSQ=0.492;LDAF=0.0350;AVGPOST=0.9496;RSQ=0.4071;ERATE=0.0133;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70077272 rs112438935 AAAAAAAG A 127 PASS INDEL;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0049;AVGPOST=0.9960;RSQ=0.6481;ERATE=0.0009;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70077276 . GA G 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70077297 . TTG T 136 PASS INDEL;BAVGPOST=0.986;BRSQ=0.546;LDAF=0.0292;AVGPOST=0.9645;RSQ=0.4956;ERATE=0.0128;THETA=0.0009;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70077344 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0054;AVGPOST=0.9991;RSQ=0.9221;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70077360 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4736;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70077752 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.687;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6697;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70077760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0026;AVGPOST=0.9979;RSQ=0.6648;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70077762 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.7948;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70077821 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70077852 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6652;ERATE=0.0007;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70077862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70077999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9654;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70078074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0201;AVGPOST=0.9973;RSQ=0.9453;ERATE=0.0004;THETA=0.0006;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 70078075 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70078179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.9252;ERATE=0.0003;THETA=0.0026;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70078234 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8316;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70078381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0364;AVGPOST=0.9979;RSQ=0.9788;ERATE=0.0004;THETA=0.0010;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70078459 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0058;AVGPOST=0.9993;RSQ=0.9577;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70078529 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70078571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0110;AVGPOST=0.9981;RSQ=0.9365;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70078643 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0034;AVGPOST=0.9988;RSQ=0.8531;ERATE=0.0013;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70078718 . ATAAGTT A 133 PASS INDEL;BAVGPOST=0.999;BRSQ=0.729;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6713;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70078805 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.4762;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70078867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70078878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9324;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70078931 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5636;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70078953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70078955 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079005 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9795;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70079111 . TAGTC T 526 PASS INDEL;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4676;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079119 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7584;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079154 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6708;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70079266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70079267 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8465;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70079285 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6057;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079447 . A AT 51 PASS INDEL;BAVGPOST=0.996;BRSQ=0.584;LDAF=0.0130;AVGPOST=0.9828;RSQ=0.5003;ERATE=0.0045;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70079539 . C CT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5839;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70079559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4125;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0005;THETA=0.0023;AC=902;AN=2184 GT:DS:GL:BD 0.41300365 0 1 70079609 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.8049;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70079696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6794;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70079955 . C CG 44 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6743;ERATE=0.0005;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70080018 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70080019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.8259;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70080048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70080066 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.832;LDAF=0.0080;AVGPOST=0.9968;RSQ=0.8543;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70080151 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70080163 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70080184 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8679;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70080234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4658;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70080254 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7495;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70080296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0020;AVGPOST=0.9980;RSQ=0.5904;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70080458 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.523;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6604;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70080506 . ACTC A 235 PASS INDEL;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0038;AVGPOST=0.9972;RSQ=0.6983;ERATE=0.0005;THETA=0.0033;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70080522 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9483;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70080538 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7251;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70080558 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.716;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4544;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70080608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70080706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0301;AVGPOST=0.9987;RSQ=0.9851;ERATE=0.0003;THETA=0.0004;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70080773 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7525;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70080893 . TA T 724 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0117;AVGPOST=0.9985;RSQ=0.9494;ERATE=0.0004;THETA=0.0004;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70081004 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.9918;AVGPOST=0.9976;RSQ=0.8862;ERATE=0.0005;THETA=0.0003;AC=2167;AN=2184 GT:DS:GL:BD 0.99221611 1 1 70081012 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2500;AVGPOST=0.9949;RSQ=0.9896;ERATE=0.0005;THETA=0.0005;AC=546;AN=2184 GT:DS:GL:BD 0.25000000 0 1 70081014 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7220;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70081122 . A AAAC 185 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5038;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081361 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70081492 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9993;RSQ=0.9703;ERATE=0.0004;THETA=0.0014;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70081540 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9859;ERATE=0.0003;THETA=0.0010;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70081553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5824;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70081595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6629;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081638 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4410;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081757 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70081871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7819;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70081939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70082050 . AC A 364 PASS INDEL;BAVGPOST=0.998;BRSQ=0.787;LDAF=0.0057;AVGPOST=0.9959;RSQ=0.6975;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70082078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1500;AVGPOST=0.9993;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 70082086 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0115;AVGPOST=0.9998;RSQ=0.9903;ERATE=0.0003;THETA=0.0008;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70082139 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=0.9999;RSQ=0.9960;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70082195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.743;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4883;ERATE=0.0003;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70082280 . TA T 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3885;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70082444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7828;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70082468 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0096;AVGPOST=0.9992;RSQ=0.9685;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70082559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9517;ERATE=0.0003;THETA=0.0013;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70082672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6782;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70082720 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8538;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70082744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1542;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0004;THETA=0.0006;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 70082990 rs35872506 C CTT 79153 PASS INDEL;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5816;AVGPOST=0.9915;RSQ=0.9853;ERATE=0.0017;THETA=0.0004;AC=1272;AN=2184 GT:DS:GL:BD 0.58241761 1 1 70083129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0399;AVGPOST=0.9995;RSQ=0.9934;ERATE=0.0004;THETA=0.0006;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 70083248 rs112344546 CTA C 1070 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0117;AVGPOST=0.9984;RSQ=0.9417;ERATE=0.0003;THETA=0.0015;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70083265 . ATAT A 901 PASS INDEL;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0112;AVGPOST=0.9976;RSQ=0.9168;ERATE=0.0006;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70083300 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.723;LDAF=0.9989;AVGPOST=0.9994;RSQ=0.7233;ERATE=0.0003;THETA=0.0008;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 70083407 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.614;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6225;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70083449 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.711;LDAF=0.0045;AVGPOST=0.9968;RSQ=0.7298;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70083508 . C CT 1465 PASS INDEL;BAVGPOST=0.972;BRSQ=0.753;LDAF=0.1048;AVGPOST=0.8977;RSQ=0.5921;ERATE=0.0141;THETA=0.0003;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70083577 . C CT 1425 PASS INDEL;BAVGPOST=0.458;BRSQ=0.093;LDAF=0.6026;AVGPOST=0.6843;RSQ=0.4284;ERATE=0.0143;THETA=0.0006;AC=1357;AN=2184 GT:DS:GL:BD 0.62133700 1 1 70083589 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.886;BRSQ=0.370;LDAF=0.1041;AVGPOST=0.9181;RSQ=0.6733;ERATE=0.0030;THETA=0.0007;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 70083619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0090;AVGPOST=0.9894;RSQ=0.5512;ERATE=0.0011;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70083779 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.923;LDAF=0.1719;AVGPOST=0.9871;RSQ=0.9659;ERATE=0.0008;THETA=0.0024;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 70083869 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4928;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70083923 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6444;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70083940 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70083959 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.805;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9478;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70083972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6226;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70084186 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9892;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70084225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70084394 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9623;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70084436 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9609;ERATE=0.0003;THETA=0.0012;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70084440 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70084447 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70084489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70084608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70084612 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70084734 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8570;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70084748 . G GTCTT 20878 PASS INDEL;BAVGPOST=0.892;BRSQ=0.764;LDAF=0.4550;AVGPOST=0.8555;RSQ=0.7420;ERATE=0.0754;THETA=0.0004;AC=994;AN=2184 GT:DS:GL:BD 0.45512819 0 1 70085061 rs34860338 T TTCTG 79074 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.5873;AVGPOST=0.9867;RSQ=0.9777;ERATE=0.0011;THETA=0.0006;AC=1290;AN=2184 GT:DS:GL:BD 0.59065932 1 1 70085065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.654;LDAF=0.0131;AVGPOST=0.9833;RSQ=0.5425;ERATE=0.0042;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70085101 . CTCCT C 152 PASS INDEL;BAVGPOST=0.995;BRSQ=0.566;LDAF=0.0134;AVGPOST=0.9867;RSQ=0.6433;ERATE=0.0015;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70085113 . CCT C 1477 PASS INDEL;BAVGPOST=0.996;BRSQ=0.914;LDAF=0.0223;AVGPOST=0.9981;RSQ=0.9594;ERATE=0.0005;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70085131 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5617;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70085218 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5933;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70085221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6768;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70085387 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0046;AVGPOST=0.9997;RSQ=0.9720;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70085408 . C CTTTG 20239 PASS INDEL;BAVGPOST=0.992;BRSQ=0.974;LDAF=0.1770;AVGPOST=0.9957;RSQ=0.9877;ERATE=0.0006;THETA=0.0006;AC=388;AN=2184 GT:DS:GL:BD 0.17765568 0 1 70085430 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1505;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0005;THETA=0.0004;AC=328;AN=2184 GT:DS:GL:BD 0.15018316 0 1 70085462 . AT A 42 PASS INDEL;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0043;AVGPOST=0.9966;RSQ=0.6921;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70085493 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6557;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0005;THETA=0.0002;AC=1433;AN=2184 GT:DS:GL:BD 0.65613556 1 1 70085573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7941;ERATE=0.0002;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70085576 . CCTT C 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4160;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70085658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6728;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0005;THETA=0.0003;AC=1470;AN=2184 GT:DS:GL:BD 0.67307693 1 1 70085784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.979;LDAF=0.0662;AVGPOST=0.9985;RSQ=0.9908;ERATE=0.0003;THETA=0.0002;AC=144;AN=2184 GT:DS:GL:BD 0.06593407 0 1 70085813 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9167;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70085910 rs71776521 CCAAATACTG C 87517 PASS INDEL;BAVGPOST=0.988;BRSQ=0.978;LDAF=0.6612;AVGPOST=0.9641;RSQ=0.9414;ERATE=0.0059;THETA=0.0002;AC=1463;AN=2184 GT:DS:GL:BD 0.66987181 1 1 70085984 rs71776521 G GC 1090 PASS INDEL;BAVGPOST=0.926;BRSQ=0.478;LDAF=0.1124;AVGPOST=0.8786;RSQ=0.5179;ERATE=0.0238;THETA=0.0002;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 70085993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70086082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0002;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70086126 . TA T 482 PASS INDEL;BAVGPOST=0.964;BRSQ=0.741;LDAF=0.0891;AVGPOST=0.9798;RSQ=0.9033;ERATE=0.0008;THETA=0.0001;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 70086301 rs77241877 AC A 9739 PASS INDEL;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0769;AVGPOST=0.9960;RSQ=0.9784;ERATE=0.0004;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70086303 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.7961;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70086317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70086372 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5720;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70086379 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0224;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0002;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70086452 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8574;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70086537 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8150;AVGPOST=0.9983;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=1780;AN=2184 GT:DS:GL:BD 0.81501830 1 1 70086632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8288;ERATE=0.0010;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70086777 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0249;AVGPOST=0.9962;RSQ=0.9488;ERATE=0.0002;THETA=0.0002;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 70086841 . AG A 249 PASS INDEL;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0027;AVGPOST=0.9982;RSQ=0.7134;ERATE=0.0006;THETA=0.0001;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70086883 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6078;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70086952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6295;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70086983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0085;AVGPOST=0.9986;RSQ=0.9299;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70087192 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0061;AVGPOST=0.9989;RSQ=0.9272;ERATE=0.0002;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70087297 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0769;AVGPOST=0.9973;RSQ=0.9855;ERATE=0.0002;THETA=0.0003;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70087341 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7427;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70087447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0292;AVGPOST=0.9987;RSQ=0.9830;ERATE=0.0003;THETA=0.0004;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70087546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3453;AVGPOST=0.9982;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=755;AN=2184 GT:DS:GL:BD 0.34569597 0 1 70087776 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9267;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70088017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8704;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70088086 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70088122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70088141 . TAA T 2886 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0168;AVGPOST=0.9973;RSQ=0.9390;ERATE=0.0003;THETA=0.0002;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70088191 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5650;ERATE=0.0002;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70088200 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6848;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70088332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0131;AVGPOST=0.9993;RSQ=0.9780;ERATE=0.0002;THETA=0.0003;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70088361 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0032;AVGPOST=0.9987;RSQ=0.8397;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70088390 rs66729707 G GAA 3922 PASS INDEL;BAVGPOST=0.974;BRSQ=0.723;LDAF=0.0553;AVGPOST=0.9576;RSQ=0.7106;ERATE=0.0040;THETA=0.0004;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 70088403 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0270;AVGPOST=0.9978;RSQ=0.9691;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70088565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.2566;AVGPOST=0.9961;RSQ=0.9921;ERATE=0.0006;THETA=0.0005;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 70088626 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0017;AVGPOST=0.9983;RSQ=0.6475;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70088777 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2321;AVGPOST=0.9990;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 70088876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.979;LDAF=0.8281;AVGPOST=0.9959;RSQ=0.9889;ERATE=0.0006;THETA=0.0003;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 70088995 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0311;AVGPOST=0.9988;RSQ=0.9830;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70089032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0020;AVGPOST=0.9990;RSQ=0.7887;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70089033 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.734;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70089060 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70089148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6776;AVGPOST=0.9988;RSQ=0.9979;ERATE=0.0003;THETA=0.0002;AC=1481;AN=2184 GT:DS:GL:BD 0.67811358 1 1 70089177 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1409;AVGPOST=0.9988;RSQ=0.9956;ERATE=0.0003;THETA=0.0003;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 70089365 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9133;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70089547 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9930;ERATE=0.0003;THETA=0.0003;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70089661 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0020;AVGPOST=0.9994;RSQ=0.8598;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70089736 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.8259;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70089947 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70090111 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70090125 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70090151 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70090241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8866;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70090242 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0037;AVGPOST=0.9977;RSQ=0.7776;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70090290 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0310;AVGPOST=0.9997;RSQ=0.9954;ERATE=0.0002;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70090353 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0002;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70090395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9632;ERATE=0.0002;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70090424 . T TA 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5268;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70090480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6312;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0005;THETA=0.0002;AC=1379;AN=2184 GT:DS:GL:BD 0.63141024 1 1 70090484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.955;BRSQ=0.920;LDAF=0.5987;AVGPOST=0.9509;RSQ=0.9313;ERATE=0.0054;THETA=0.0015;AC=1328;AN=2184 GT:DS:GL:BD 0.60805863 1 1 70090998 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2149;AVGPOST=0.9970;RSQ=0.9933;ERATE=0.0005;THETA=0.0005;AC=468;AN=2184 GT:DS:GL:BD 0.21428572 0 1 70091057 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.4092;AVGPOST=0.9934;RSQ=0.9888;ERATE=0.0007;THETA=0.0005;AC=895;AN=2184 GT:DS:GL:BD 0.40979853 0 1 70091397 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6398;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70091444 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.3047;AVGPOST=0.9721;RSQ=0.9519;ERATE=0.0022;THETA=0.0004;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 70091553 rs35333946 G GT 31205 PASS INDEL;BAVGPOST=0.964;BRSQ=0.945;LDAF=0.5899;AVGPOST=0.9204;RSQ=0.8899;ERATE=0.0096;THETA=0.0003;AC=1318;AN=2184 GT:DS:GL:BD 0.60347986 1 1 70091555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2170;AVGPOST=0.9974;RSQ=0.9942;ERATE=0.0004;THETA=0.0006;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 70091609 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4822;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70091633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.989;LDAF=0.6243;AVGPOST=0.9894;RSQ=0.9841;ERATE=0.0014;THETA=0.0004;AC=1368;AN=2184 GT:DS:GL:BD 0.62637365 1 1 70091695 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7052;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70091777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.667;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70091860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9526;AVGPOST=0.9983;RSQ=0.9871;ERATE=0.0004;THETA=0.0006;AC=2081;AN=2184 GT:DS:GL:BD 0.95283884 1 1 70091890 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2102;AVGPOST=0.9993;RSQ=0.9979;ERATE=0.0004;THETA=0.0005;AC=460;AN=2184 GT:DS:GL:BD 0.21062271 0 1 70091950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0216;AVGPOST=0.9989;RSQ=0.9785;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70091962 . T TCTTC 755 PASS INDEL;BAVGPOST=0.994;BRSQ=0.671;LDAF=0.0149;AVGPOST=0.9931;RSQ=0.8140;ERATE=0.0009;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70091987 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7208;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70092041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8939;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70092146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.656;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5655;ERATE=0.0005;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70092196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6251;AVGPOST=0.9963;RSQ=0.9943;ERATE=0.0004;THETA=0.0003;AC=1367;AN=2184 GT:DS:GL:BD 0.62591577 1 1 70092235 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6260;AVGPOST=0.9983;RSQ=0.9971;ERATE=0.0003;THETA=0.0009;AC=1368;AN=2184 GT:DS:GL:BD 0.62637365 1 1 70092280 . T TA 40 PASS INDEL;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0020;AVGPOST=0.9970;RSQ=0.3626;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70092287 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5826;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70092300 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.9774;AVGPOST=0.9984;RSQ=0.9739;ERATE=0.0003;THETA=0.0002;AC=2136;AN=2184 GT:DS:GL:BD 0.97802198 1 1 70092311 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0019;AVGPOST=0.9973;RSQ=0.5132;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70092331 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0075;AVGPOST=0.9996;RSQ=0.9776;ERATE=0.0003;THETA=0.0048;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70092333 . TAG T 190 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8277;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70092425 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0028;AVGPOST=0.9965;RSQ=0.4861;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70092440 . A AT 8406 PASS INDEL;BAVGPOST=0.877;BRSQ=0.794;LDAF=0.5233;AVGPOST=0.8564;RSQ=0.7954;ERATE=0.0215;THETA=0.0020;AC=1197;AN=2184 GT:DS:GL:BD 0.54807693 1 1 70092543 rs68073295 T TA 47209 PASS INDEL;BAVGPOST=0.952;BRSQ=0.933;LDAF=0.6201;AVGPOST=0.9757;RSQ=0.9648;ERATE=0.0006;THETA=0.0008;AC=1356;AN=2184 GT:DS:GL:BD 0.62087911 1 1 70092544 . A AC 6153 PASS INDEL;BAVGPOST=0.882;BRSQ=0.800;LDAF=0.5249;AVGPOST=0.8596;RSQ=0.8064;ERATE=0.0289;THETA=0.0007;AC=1176;AN=2184 GT:DS:GL:BD 0.53846157 1 1 70092548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7758;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70092558 . AT A 709 PASS INDEL;BAVGPOST=0.997;BRSQ=0.661;LDAF=0.0061;AVGPOST=0.9968;RSQ=0.7905;ERATE=0.0004;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70092599 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6644;ERATE=0.0007;THETA=0.0065;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70092665 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0050;AVGPOST=0.9981;RSQ=0.8609;ERATE=0.0003;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70092727 . A AT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.689;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70092772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.780;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6729;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70092777 . C CT 51 PASS INDEL;BAVGPOST=0.988;BRSQ=0.788;LDAF=0.0324;AVGPOST=0.9888;RSQ=0.8642;ERATE=0.0016;THETA=0.0009;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70092905 . T TC 2001 PASS INDEL;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0263;AVGPOST=0.9979;RSQ=0.9688;ERATE=0.0004;THETA=0.0006;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70092913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2133;AVGPOST=0.9977;RSQ=0.9949;ERATE=0.0004;THETA=0.0012;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 70093029 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5312;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70093083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7585;ERATE=0.0003;THETA=0.0037;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70093112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7367;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70093164 . A AT 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.762;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8300;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70093165 rs71114702 G GTTT 58053 PASS INDEL;BAVGPOST=0.909;BRSQ=0.808;LDAF=0.5828;AVGPOST=0.8646;RSQ=0.7537;ERATE=0.0550;THETA=0.0003;AC=1285;AN=2184 GT:DS:GL:BD 0.58836997 1 1 70093210 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.820;LDAF=0.0102;AVGPOST=0.9973;RSQ=0.8928;ERATE=0.0008;THETA=0.0069;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70093251 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9952;RSQ=0.5508;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70093373 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6815;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70093492 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5587;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70093494 rs3080825 AAT A 38776 PASS INDEL;BAVGPOST=0.989;BRSQ=0.979;LDAF=0.4156;AVGPOST=0.9835;RSQ=0.9730;ERATE=0.0027;THETA=0.0006;AC=899;AN=2184 GT:DS:GL:BD 0.41163003 0 1 70093539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70093585 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.949;LDAF=0.0237;AVGPOST=0.9985;RSQ=0.9773;ERATE=0.0003;THETA=0.0012;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70093611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2139;AVGPOST=0.9984;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=467;AN=2184 GT:DS:GL:BD 0.21382783 0 1 70093624 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70093632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70093635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0090;AVGPOST=0.9980;RSQ=0.9175;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70093669 . CAG C 23403 PASS INDEL;BAVGPOST=0.682;BRSQ=0.480;LDAF=0.5576;AVGPOST=0.7144;RSQ=0.5534;ERATE=0.0425;THETA=0.0004;AC=1178;AN=2184 GT:DS:GL:BD 0.53937727 1 1 70093791 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.6043;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70093817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6768;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70093928 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8541;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70093939 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0096;AVGPOST=0.9992;RSQ=0.9602;ERATE=0.0003;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70093942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7779;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70093945 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0278;AVGPOST=0.9991;RSQ=0.9863;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70093952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7147;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70093963 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5779;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70093988 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0258;AVGPOST=0.9995;RSQ=0.9901;ERATE=0.0004;THETA=0.0004;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70094024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1326;AVGPOST=0.9970;RSQ=0.9902;ERATE=0.0004;THETA=0.0003;AC=287;AN=2184 GT:DS:GL:BD 0.13141026 0 1 70094037 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0134;AVGPOST=0.9994;RSQ=0.9858;ERATE=0.0003;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70094085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.6249;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70094108 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8915;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70094112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70094150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7196;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094234 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6141;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094243 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8523;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70094283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0274;AVGPOST=1.0000;RSQ=0.9992;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70094312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0044;AVGPOST=0.9978;RSQ=0.8467;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70094517 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0275;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70094572 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9208;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70094592 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.730;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7417;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094620 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5643;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094623 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0276;AVGPOST=0.9996;RSQ=0.9941;ERATE=0.0003;THETA=0.0009;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70094701 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6637;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0013;AVGPOST=0.9998;RSQ=0.9395;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70094849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9546;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70094851 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70094860 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2916;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 70094985 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2119;AVGPOST=0.9976;RSQ=0.9939;ERATE=0.0004;THETA=0.0007;AC=465;AN=2184 GT:DS:GL:BD 0.21291208 0 1 70095030 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0265;AVGPOST=0.9976;RSQ=0.9657;ERATE=0.0004;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70095096 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.3041;AVGPOST=0.9963;RSQ=0.9933;ERATE=0.0003;THETA=0.0005;AC=664;AN=2184 GT:DS:GL:BD 0.30402932 0 1 70095141 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.2983;AVGPOST=0.9970;RSQ=0.9944;ERATE=0.0003;THETA=0.0002;AC=652;AN=2184 GT:DS:GL:BD 0.29853481 0 1 70095145 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=0.9997;RSQ=0.9950;ERATE=0.0003;THETA=0.0007;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70095236 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.553;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7488;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70095357 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70095432 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6112;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70095491 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9809;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70095503 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7548;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70095634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2551;AVGPOST=0.9984;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=557;AN=2184 GT:DS:GL:BD 0.25503662 0 1 70095660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7792;ERATE=0.0008;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70095661 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0273;AVGPOST=0.9973;RSQ=0.9666;ERATE=0.0003;THETA=0.0004;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70095691 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.944;LDAF=0.9760;AVGPOST=0.9987;RSQ=0.9809;ERATE=0.0004;THETA=0.0003;AC=2133;AN=2184 GT:DS:GL:BD 0.97664833 1 1 70095744 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.648;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.7872;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70095844 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.407;LDAF=0.0045;AVGPOST=0.9924;RSQ=0.3887;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70095913 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5817;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0005;THETA=0.0003;AC=1270;AN=2184 GT:DS:GL:BD 0.58150184 1 1 70096137 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0266;AVGPOST=0.9996;RSQ=0.9942;ERATE=0.0003;THETA=0.0007;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70096154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6021;AVGPOST=0.9979;RSQ=0.9961;ERATE=0.0006;THETA=0.0009;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70096164 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6019;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0004;THETA=0.0006;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70096220 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.776;LDAF=0.0023;AVGPOST=0.9988;RSQ=0.7518;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70096296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6010;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096313 . A AT 10023 PASS INDEL;BAVGPOST=0.857;BRSQ=0.741;LDAF=0.4687;AVGPOST=0.8269;RSQ=0.7383;ERATE=0.0442;THETA=0.0006;AC=1061;AN=2184 GT:DS:GL:BD 0.48580587 0 1 70096362 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096393 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.874;LDAF=0.0064;AVGPOST=0.9981;RSQ=0.8632;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70096394 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6018;AVGPOST=0.9971;RSQ=0.9949;ERATE=0.0008;THETA=0.0022;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70096469 . GAAAC G 48 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5789;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096517 rs72511927 T TTA 336 PASS INDEL;BAVGPOST=0.903;BRSQ=0.364;LDAF=0.1227;AVGPOST=0.8393;RSQ=0.4335;ERATE=0.0231;THETA=0.0008;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 70096531 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0032;AVGPOST=0.9983;RSQ=0.7994;ERATE=0.0003;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70096602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9350;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70096618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6017;AVGPOST=0.9974;RSQ=0.9955;ERATE=0.0008;THETA=0.0009;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70096662 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096692 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.697;LDAF=0.0055;AVGPOST=0.9960;RSQ=0.7267;ERATE=0.0004;THETA=0.0009;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70096700 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6008;AVGPOST=0.9988;RSQ=0.9977;ERATE=0.0006;THETA=0.0007;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 70096812 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0160;AVGPOST=0.9990;RSQ=0.9724;ERATE=0.0005;THETA=0.0004;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70096835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6083;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4905;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70096895 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6221;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70096998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7635;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70096999 . A AC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0018;AVGPOST=0.9981;RSQ=0.5584;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70097057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.6018;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0005;THETA=0.0004;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70097074 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9994;RSQ=0.9843;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70097140 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.822;LDAF=0.0063;AVGPOST=0.9983;RSQ=0.8985;ERATE=0.0002;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70097173 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0560;AVGPOST=0.9969;RSQ=0.9830;ERATE=0.0003;THETA=0.0006;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 70097180 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6019;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0007;THETA=0.0005;AC=1314;AN=2184 GT:DS:GL:BD 0.60164833 1 1 70097229 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4492;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0007;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 70097282 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7773;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70097358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6010;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0004;THETA=0.0023;AC=1312;AN=2184 GT:DS:GL:BD 0.60073262 1 1 70097371 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.5984;AVGPOST=0.9932;RSQ=0.9891;ERATE=0.0004;THETA=0.0007;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 70097432 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.983;LDAF=0.4459;AVGPOST=0.9944;RSQ=0.9923;ERATE=0.0004;THETA=0.0006;AC=975;AN=2184 GT:DS:GL:BD 0.44642857 0 1 70097444 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0161;AVGPOST=0.9986;RSQ=0.9681;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70097445 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.981;LDAF=0.5980;AVGPOST=0.9917;RSQ=0.9865;ERATE=0.0007;THETA=0.0026;AC=1309;AN=2184 GT:DS:GL:BD 0.59935898 1 1 70097449 . G GA 1617 PASS INDEL;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.0225;AVGPOST=0.9974;RSQ=0.9502;ERATE=0.0006;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70097479 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.797;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.7208;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70097480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.548;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.3562;ERATE=0.0005;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70097571 . TTGTG T 27553 PASS INDEL;BAVGPOST=0.927;BRSQ=0.876;LDAF=0.5609;AVGPOST=0.9165;RSQ=0.8772;ERATE=0.0091;THETA=0.0005;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 70097593 rs60104691 ATG A 15913 PASS INDEL;BAVGPOST=0.819;BRSQ=0.681;LDAF=0.4898;AVGPOST=0.7937;RSQ=0.6726;ERATE=0.0316;THETA=0.0006;AC=1109;AN=2184 GT:DS:GL:BD 0.50778389 1 1 70097609 . T TAC 5111 PASS INDEL;BAVGPOST=0.847;BRSQ=0.725;LDAF=0.4322;AVGPOST=0.8197;RSQ=0.7093;ERATE=0.0340;THETA=0.0008;AC=959;AN=2184 GT:DS:GL:BD 0.43910256 0 1 70097658 rs57381218 C CAT 32457 PASS INDEL;BAVGPOST=0.931;BRSQ=0.886;LDAF=0.5378;AVGPOST=0.9468;RSQ=0.9234;ERATE=0.0023;THETA=0.0011;AC=1190;AN=2184 GT:DS:GL:BD 0.54487181 1 1 70097664 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0259;AVGPOST=0.9989;RSQ=0.9814;ERATE=0.0004;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70097789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4031;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70097932 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.464;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3451;ERATE=0.0007;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70097982 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0265;AVGPOST=0.9952;RSQ=0.9372;ERATE=0.0004;THETA=0.0012;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70097995 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.889;LDAF=0.0240;AVGPOST=0.9976;RSQ=0.9646;ERATE=0.0004;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70098020 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.5953;AVGPOST=0.9817;RSQ=0.9709;ERATE=0.0012;THETA=0.0047;AC=1308;AN=2184 GT:DS:GL:BD 0.59890109 1 1 70098025 . TAA T 309 PASS INDEL;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0033;AVGPOST=0.9984;RSQ=0.8166;ERATE=0.0004;THETA=0.0013;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70098132 . ACTAAT A 414 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70098156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.939;LDAF=0.5690;AVGPOST=0.9677;RSQ=0.9526;ERATE=0.0009;THETA=0.0009;AC=1249;AN=2184 GT:DS:GL:BD 0.57188642 1 1 70098194 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.963;BRSQ=0.940;LDAF=0.5693;AVGPOST=0.9685;RSQ=0.9540;ERATE=0.0004;THETA=0.0013;AC=1248;AN=2184 GT:DS:GL:BD 0.57142860 1 1 70098195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8379;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70098206 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0409;AVGPOST=0.9988;RSQ=0.9887;ERATE=0.0003;THETA=0.0008;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 70098330 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6347;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70098460 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0057;AVGPOST=0.9987;RSQ=0.9186;ERATE=0.0003;THETA=0.0032;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70098477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.951;LDAF=0.5749;AVGPOST=0.9824;RSQ=0.9742;ERATE=0.0006;THETA=0.0005;AC=1263;AN=2184 GT:DS:GL:BD 0.57829672 1 1 70098499 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.969;LDAF=0.4501;AVGPOST=0.9888;RSQ=0.9852;ERATE=0.0004;THETA=0.0009;AC=984;AN=2184 GT:DS:GL:BD 0.45054945 0 1 70098502 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0010;AVGPOST=0.9991;RSQ=0.6311;ERATE=0.0004;THETA=0.0057;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70098584 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5819;AVGPOST=0.9919;RSQ=0.9879;ERATE=0.0012;THETA=0.0012;AC=1272;AN=2184 GT:DS:GL:BD 0.58241761 1 1 70098596 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0246;AVGPOST=0.9978;RSQ=0.9654;ERATE=0.0004;THETA=0.0045;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70098609 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6287;ERATE=0.0004;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70098693 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9106;ERATE=0.0004;THETA=0.0043;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70098750 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.983;LDAF=0.5433;AVGPOST=0.9863;RSQ=0.9819;ERATE=0.0004;THETA=0.0011;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 70098800 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.982;LDAF=0.5431;AVGPOST=0.9861;RSQ=0.9816;ERATE=0.0003;THETA=0.0020;AC=1185;AN=2184 GT:DS:GL:BD 0.54258239 1 1 70098813 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.985;LDAF=0.6058;AVGPOST=0.9865;RSQ=0.9810;ERATE=0.0005;THETA=0.0253;AC=1321;AN=2184 GT:DS:GL:BD 0.60485345 1 1 70098826 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1422;AVGPOST=0.9969;RSQ=0.9931;ERATE=0.0003;THETA=0.0074;AC=310;AN=2184 GT:DS:GL:BD 0.14194140 0 1 70099048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.6004;AVGPOST=0.9850;RSQ=0.9767;ERATE=0.0012;THETA=0.0007;AC=1311;AN=2184 GT:DS:GL:BD 0.60027474 1 1 70099079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9500;ERATE=0.0004;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70099081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.5738;AVGPOST=0.9867;RSQ=0.9802;ERATE=0.0007;THETA=0.0114;AC=1252;AN=2184 GT:DS:GL:BD 0.57326007 1 1 70099108 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4629;ERATE=0.0006;THETA=0.0054;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70099129 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0129;AVGPOST=0.9969;RSQ=0.9148;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70099133 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5650;ERATE=0.0003;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70099286 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8085;ERATE=0.0004;THETA=0.0024;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70099299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.964;LDAF=0.0379;AVGPOST=0.9984;RSQ=0.9796;ERATE=0.0006;THETA=0.0113;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70099319 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6615;ERATE=0.0002;THETA=0.0026;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70099321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.3841;AVGPOST=0.9913;RSQ=0.9864;ERATE=0.0007;THETA=0.0006;AC=840;AN=2184 GT:DS:GL:BD 0.38461539 0 1 70099392 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0068;AVGPOST=0.9977;RSQ=0.8579;ERATE=0.0005;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70099415 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9139;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70099451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0035;AVGPOST=0.9989;RSQ=0.8899;ERATE=0.0002;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70099453 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0211;AVGPOST=0.9965;RSQ=0.9278;ERATE=0.0005;THETA=0.0007;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70099482 . TA T 1061 PASS INDEL;BAVGPOST=0.995;BRSQ=0.837;LDAF=0.0253;AVGPOST=0.9760;RSQ=0.6148;ERATE=0.0032;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70099531 . A AG 8 PASS INDEL;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4598;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70099540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9986;RSQ=0.9254;ERATE=0.0004;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70099603 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.5555;AVGPOST=0.9898;RSQ=0.9824;ERATE=0.0012;THETA=0.0004;AC=1215;AN=2184 GT:DS:GL:BD 0.55631870 1 1 70099637 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.754;LDAF=0.0132;AVGPOST=0.9918;RSQ=0.7410;ERATE=0.0006;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70099646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7475;ERATE=0.0005;THETA=0.0075;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70099668 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.951;LDAF=0.0667;AVGPOST=0.9954;RSQ=0.9696;ERATE=0.0005;THETA=0.0010;AC=145;AN=2184 GT:DS:GL:BD 0.06639194 0 1 70099673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70099711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.839;LDAF=0.0107;AVGPOST=0.9969;RSQ=0.8791;ERATE=0.0004;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70099968 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0197;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0009;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70099979 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.815;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4876;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70100014 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0119;AVGPOST=0.9993;RSQ=0.9770;ERATE=0.0002;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70100219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7184;ERATE=0.0005;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70100227 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.621;LDAF=0.0023;AVGPOST=0.9982;RSQ=0.6586;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70100229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.6022;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70100315 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.850;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.9094;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70100317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0191;AVGPOST=0.9989;RSQ=0.9810;ERATE=0.0002;THETA=0.0008;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 70100319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.987;LDAF=0.5633;AVGPOST=0.9842;RSQ=0.9746;ERATE=0.0010;THETA=0.0004;AC=1235;AN=2184 GT:DS:GL:BD 0.56547618 1 1 70100416 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.885;LDAF=0.0926;AVGPOST=0.9828;RSQ=0.9280;ERATE=0.0007;THETA=0.0004;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 70100633 . G GA 278 PASS INDEL;BAVGPOST=0.998;BRSQ=0.717;LDAF=0.0040;AVGPOST=0.9966;RSQ=0.6437;ERATE=0.0008;THETA=0.0039;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70100649 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.775;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70100724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0048;AVGPOST=0.9993;RSQ=0.9314;ERATE=0.0003;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70100760 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7540;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70100790 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.786;LDAF=0.0068;AVGPOST=0.9968;RSQ=0.7991;ERATE=0.0013;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70100934 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70100973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0033;AVGPOST=0.9991;RSQ=0.8920;ERATE=0.0003;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70101066 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1388;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=303;AN=2184 GT:DS:GL:BD 0.13873626 0 1 70101328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1385;AVGPOST=0.9969;RSQ=0.9903;ERATE=0.0004;THETA=0.0005;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 70101555 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0039;AVGPOST=0.9994;RSQ=0.9238;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70101593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.7929;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70101924 . AC A 192 PASS INDEL;BAVGPOST=0.911;BRSQ=0.333;LDAF=0.1190;AVGPOST=0.8570;RSQ=0.4605;ERATE=0.0161;THETA=0.0003;AC=176;AN=2184 GT:DS:GL:BD 0.08058608 0 1 70102194 rs66525951 CA C 52923 PASS INDEL;BAVGPOST=0.993;BRSQ=0.935;LDAF=0.9458;AVGPOST=0.9923;RSQ=0.9440;ERATE=0.0010;THETA=0.0003;AC=2070;AN=2184 GT:DS:GL:BD 0.94780219 1 1 70102195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0040;AVGPOST=0.9993;RSQ=0.9214;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70102235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0065;AVGPOST=0.9947;RSQ=0.7167;ERATE=0.0003;THETA=0.0002;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70102312 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1203;AVGPOST=0.9984;RSQ=0.9933;ERATE=0.0005;THETA=0.0005;AC=261;AN=2184 GT:DS:GL:BD 0.11950549 0 1 70102386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0033;AVGPOST=0.9981;RSQ=0.7420;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70102507 . GT G 532 PASS INDEL;BAVGPOST=0.999;BRSQ=0.925;LDAF=0.0067;AVGPOST=0.9975;RSQ=0.8414;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70102588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6624;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70102643 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0015;AVGPOST=0.9978;RSQ=0.4437;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70102738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0503;AVGPOST=0.9984;RSQ=0.9860;ERATE=0.0003;THETA=0.0010;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 70102844 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0281;AVGPOST=0.9995;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 70102861 . AG A 13 PASS INDEL;BAVGPOST=0.964;BRSQ=0.259;LDAF=0.0615;AVGPOST=0.9156;RSQ=0.4353;ERATE=0.0116;THETA=0.0002;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 70102928 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.958;LDAF=0.0562;AVGPOST=0.9940;RSQ=0.9559;ERATE=0.0004;THETA=0.0004;AC=120;AN=2184 GT:DS:GL:BD 0.05494506 0 1 70102958 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5954;ERATE=0.0002;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70103001 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0275;AVGPOST=0.9989;RSQ=0.9865;ERATE=0.0002;THETA=0.0005;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70103008 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8006;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70103010 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70103121 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.763;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8065;ERATE=0.0003;THETA=0.0030;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70103170 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7559;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70103206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0079;AVGPOST=0.9997;RSQ=0.9853;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70103217 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.903;LDAF=0.0538;AVGPOST=0.9940;RSQ=0.9550;ERATE=0.0003;THETA=0.0003;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 70103263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0507;AVGPOST=0.9994;RSQ=0.9935;ERATE=0.0003;THETA=0.0002;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 70103264 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1527;AVGPOST=0.9976;RSQ=0.9924;ERATE=0.0004;THETA=0.0008;AC=334;AN=2184 GT:DS:GL:BD 0.15293041 0 1 70103361 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9950;ERATE=0.0002;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70103389 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70103540 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0280;AVGPOST=0.9997;RSQ=0.9951;ERATE=0.0003;THETA=0.0012;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 70103704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5809;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70103812 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9992;RSQ=0.8713;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70103818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8864;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70103825 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0084;AVGPOST=0.9991;RSQ=0.9587;ERATE=0.0002;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70104022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8530;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70104121 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9603;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70104272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0033;AVGPOST=0.9969;RSQ=0.6477;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70104493 . G GA 54 PASS INDEL;BAVGPOST=0.990;BRSQ=0.434;LDAF=0.0233;AVGPOST=0.9725;RSQ=0.5414;ERATE=0.0039;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70104506 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.757;LDAF=0.0037;AVGPOST=0.9991;RSQ=0.8843;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70104538 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.5836;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70104598 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0032;AVGPOST=0.9969;RSQ=0.6204;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70104680 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0103;AVGPOST=0.9995;RSQ=0.9771;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70104682 . C CT 10 PASS INDEL;BAVGPOST=0.994;BRSQ=0.522;LDAF=0.0100;AVGPOST=0.9883;RSQ=0.5487;ERATE=0.0012;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70104769 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6029;AVGPOST=0.9965;RSQ=0.9939;ERATE=0.0005;THETA=0.0003;AC=1315;AN=2184 GT:DS:GL:BD 0.60210621 1 1 70104871 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70104923 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0237;AVGPOST=0.9979;RSQ=0.9641;ERATE=0.0004;THETA=0.0026;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70104948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9141;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70105101 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7283;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70105166 . G GTA 307 PASS INDEL;BAVGPOST=0.996;BRSQ=0.554;LDAF=0.0049;AVGPOST=0.9962;RSQ=0.6392;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70105356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=0.9960;RSQ=0.8561;ERATE=0.0005;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70105373 . TA T 1105 PASS INDEL;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0081;AVGPOST=0.9951;RSQ=0.7735;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70105413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.884;LDAF=0.0129;AVGPOST=0.9972;RSQ=0.9190;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70105447 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.662;LDAF=0.0008;AVGPOST=0.9989;RSQ=0.4166;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70105472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0030;AVGPOST=0.9978;RSQ=0.6796;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70105680 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0133;AVGPOST=0.9998;RSQ=0.9923;ERATE=0.0002;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70105777 . C CA 586 PASS INDEL;BAVGPOST=0.800;BRSQ=0.499;LDAF=0.2175;AVGPOST=0.8077;RSQ=0.5916;ERATE=0.0199;THETA=0.0004;AC=409;AN=2184 GT:DS:GL:BD 0.18727106 0 1 70105844 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.5052;AVGPOST=0.9964;RSQ=0.9942;ERATE=0.0004;THETA=0.0003;AC=1102;AN=2184 GT:DS:GL:BD 0.50457877 1 1 70105862 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.5054;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0003;THETA=0.0005;AC=1104;AN=2184 GT:DS:GL:BD 0.50549453 1 1 70105880 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6944;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70105896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.973;LDAF=0.0556;AVGPOST=0.9968;RSQ=0.9769;ERATE=0.0003;THETA=0.0006;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 70105904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0063;AVGPOST=0.9956;RSQ=0.7303;ERATE=0.0003;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70105936 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6259;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70105962 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70105974 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4831;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 70106077 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7990;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1745;AN=2184 GT:DS:GL:BD 0.79899269 1 1 70106128 . AT A 9841 PASS INDEL;BAVGPOST=0.993;BRSQ=0.971;LDAF=0.1308;AVGPOST=0.9899;RSQ=0.9663;ERATE=0.0017;THETA=0.0001;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 70106133 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0043;AVGPOST=0.9989;RSQ=0.8994;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70106172 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9551;ERATE=0.0002;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70106175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0018;AVGPOST=0.9986;RSQ=0.7161;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70106217 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5081;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70106323 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9720;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70106444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0075;AVGPOST=0.9997;RSQ=0.9794;ERATE=0.0003;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70106594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0066;AVGPOST=0.9991;RSQ=0.9476;ERATE=0.0003;THETA=0.0023;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70106717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8627;ERATE=0.0016;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70106854 . C CT 124 PASS INDEL;BAVGPOST=0.996;BRSQ=0.586;LDAF=0.0039;AVGPOST=0.9956;RSQ=0.5423;ERATE=0.0011;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70106932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70106948 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70106954 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8736;AVGPOST=0.9993;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1908;AN=2184 GT:DS:GL:BD 0.87362635 1 1 70107015 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1626;AVGPOST=0.9986;RSQ=0.9955;ERATE=0.0005;THETA=0.0002;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 70107092 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.858;LDAF=0.9961;AVGPOST=0.9980;RSQ=0.8125;ERATE=0.0004;THETA=0.0003;AC=2176;AN=2184 GT:DS:GL:BD 0.99633700 1 1 70107118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70107149 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70107156 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0742;AVGPOST=0.9977;RSQ=0.9871;ERATE=0.0004;THETA=0.0004;AC=162;AN=2184 GT:DS:GL:BD 0.07417583 0 1 70107235 . AT A 56 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.3347;ERATE=0.0006;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70107274 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5086;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70107323 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.6183;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70107382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7764;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70107462 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5825;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70107504 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.843;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9094;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70107506 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.8736;AVGPOST=0.9990;RSQ=0.9955;ERATE=0.0004;THETA=0.0002;AC=1908;AN=2184 GT:DS:GL:BD 0.87362635 1 1 70107520 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8247;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70107588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6836;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70107612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.967;LDAF=0.0848;AVGPOST=0.9984;RSQ=0.9914;ERATE=0.0005;THETA=0.0003;AC=185;AN=2184 GT:DS:GL:BD 0.08470696 0 1 70107909 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1992;AVGPOST=0.9983;RSQ=0.9959;ERATE=0.0004;THETA=0.0003;AC=435;AN=2184 GT:DS:GL:BD 0.19917582 0 1 70107927 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5728;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70107981 . A AT 103 PASS INDEL;BAVGPOST=0.999;BRSQ=0.606;LDAF=0.0034;AVGPOST=0.9961;RSQ=0.5586;ERATE=0.0007;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70108088 . AAAATT A 216 PASS INDEL;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.7944;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70108138 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4542;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108163 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.0773;AVGPOST=0.9979;RSQ=0.9896;ERATE=0.0003;THETA=0.0030;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70108222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.4068;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9474;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70108367 . G GTA 1291 PASS INDEL;BAVGPOST=0.992;BRSQ=0.865;LDAF=0.0199;AVGPOST=0.9941;RSQ=0.9054;ERATE=0.0005;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70108567 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7608;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108569 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108856 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108883 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7511;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70108942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6142;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70108963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70109075 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8722;AVGPOST=0.9983;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=1906;AN=2184 GT:DS:GL:BD 0.87271065 1 1 70109180 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6805;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70109185 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5996;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70109188 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70109278 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0062;AVGPOST=0.9989;RSQ=0.9210;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70109332 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6950;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70109341 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9913;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70109390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7691;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70109433 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.758;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6812;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70109488 . TTA T 92 PASS INDEL;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0035;AVGPOST=0.9957;RSQ=0.5613;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70109536 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.504;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.8115;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70109547 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0044;AVGPOST=0.9987;RSQ=0.9052;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70109724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70109869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9998;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70109975 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70110016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0260;AVGPOST=0.9981;RSQ=0.9672;ERATE=0.0003;THETA=0.0020;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70110171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5646;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70110201 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8138;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70110228 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4620;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0002;AC=1009;AN=2184 GT:DS:GL:BD 0.46199635 0 1 70110372 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6343;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70110385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1989;AVGPOST=0.9983;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 70110482 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0029;AVGPOST=0.9993;RSQ=0.8878;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70110487 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70110495 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1626;AVGPOST=0.9991;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=356;AN=2184 GT:DS:GL:BD 0.16300367 0 1 70110591 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8655;ERATE=0.0006;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70110646 . T TC 39 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70110682 . CCTT C 1246 PASS INDEL;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0118;AVGPOST=0.9981;RSQ=0.9439;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70110712 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.8455;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70110740 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4122;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0004;THETA=0.0005;AC=900;AN=2184 GT:DS:GL:BD 0.41208792 0 1 70110804 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5281;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111027 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6955;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0070;AVGPOST=0.9997;RSQ=0.9814;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70111056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.1512;AVGPOST=0.9970;RSQ=0.9904;ERATE=0.0005;THETA=0.0003;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 70111116 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0096;AVGPOST=0.9988;RSQ=0.9507;ERATE=0.0004;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70111225 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.742;LDAF=0.0071;AVGPOST=0.9973;RSQ=0.8306;ERATE=0.0004;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70111234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8807;AVGPOST=0.9966;RSQ=0.9869;ERATE=0.0006;THETA=0.0003;AC=1926;AN=2184 GT:DS:GL:BD 0.88186812 1 1 70111284 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9067;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70111395 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7301;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70111540 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0294;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 70111570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8416;ERATE=0.0011;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70111576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4279;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0004;THETA=0.0005;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 70111578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5918;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9980;RSQ=0.9107;ERATE=0.0005;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70111625 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4288;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0006;THETA=0.0002;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70111634 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111698 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7926;ERATE=0.0012;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70111711 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9114;ERATE=0.0011;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70111741 . GT G 116 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8681;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70111864 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4284;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0006;THETA=0.0006;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70111885 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111892 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5602;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70111965 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4297;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0007;THETA=0.0026;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70112000 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70112071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.735;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70112148 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70112160 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.987;LDAF=0.4282;AVGPOST=0.9967;RSQ=0.9943;ERATE=0.0005;THETA=0.0002;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70112275 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0051;AVGPOST=0.9977;RSQ=0.8293;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70112327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7406;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70112377 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4298;ERATE=0.0006;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70112382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.6266;ERATE=0.0014;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70112418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.962;LDAF=0.2903;AVGPOST=0.9887;RSQ=0.9802;ERATE=0.0004;THETA=0.0005;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 70112513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7751;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70112514 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0111;AVGPOST=0.9997;RSQ=0.9882;ERATE=0.0003;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70112560 rs59173826 G GTTTTATATCT 56629 PASS INDEL;BAVGPOST=0.898;BRSQ=0.827;LDAF=0.3669;AVGPOST=0.9085;RSQ=0.8644;ERATE=0.0095;THETA=0.0004;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 70112578 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0164;AVGPOST=0.9989;RSQ=0.9718;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70112584 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.4299;AVGPOST=0.9968;RSQ=0.9943;ERATE=0.0015;THETA=0.0006;AC=939;AN=2184 GT:DS:GL:BD 0.42994505 0 1 70112626 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5436;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70112771 . C CT 14 PASS INDEL;BAVGPOST=0.999;BRSQ=0.506;LDAF=0.0018;AVGPOST=0.9973;RSQ=0.4517;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70112774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.805;LDAF=0.0034;AVGPOST=0.9974;RSQ=0.6778;ERATE=0.0006;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70112813 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4295;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0008;THETA=0.0007;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70112828 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4306;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=938;AN=2184 GT:DS:GL:BD 0.42948717 0 1 70112873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.883;LDAF=0.0043;AVGPOST=0.9978;RSQ=0.8232;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70112889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7648;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70112893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.4304;AVGPOST=0.9956;RSQ=0.9926;ERATE=0.0005;THETA=0.0007;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70112918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4292;AVGPOST=0.9959;RSQ=0.9936;ERATE=0.0005;THETA=0.0003;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70112953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.840;LDAF=0.0107;AVGPOST=0.9970;RSQ=0.8776;ERATE=0.0008;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70112983 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6199;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70113146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0093;AVGPOST=0.9988;RSQ=0.9363;ERATE=0.0005;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70113161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0088;AVGPOST=0.9996;RSQ=0.9814;ERATE=0.0004;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70113269 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7278;ERATE=0.0003;THETA=0.0035;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70113317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70113321 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0076;AVGPOST=0.9968;RSQ=0.8628;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70113399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0447;AVGPOST=0.9997;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 70113417 . C CAAG 15867 PASS INDEL;BAVGPOST=0.974;BRSQ=0.951;LDAF=0.4175;AVGPOST=0.9796;RSQ=0.9692;ERATE=0.0013;THETA=0.0005;AC=920;AN=2184 GT:DS:GL:BD 0.42124543 0 1 70113504 rs71111428 A AAGAT 69751 PASS INDEL;BAVGPOST=0.973;BRSQ=0.950;LDAF=0.4161;AVGPOST=0.9799;RSQ=0.9705;ERATE=0.0007;THETA=0.0006;AC=917;AN=2184 GT:DS:GL:BD 0.41987181 0 1 70113505 . CAG C 259 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.6942;ERATE=0.0005;THETA=0.0013;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70113646 rs58223093 CGTCT C 52204 PASS INDEL;BAVGPOST=0.985;BRSQ=0.972;LDAF=0.4213;AVGPOST=0.9707;RSQ=0.9530;ERATE=0.0079;THETA=0.0006;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 70113658 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0023;AVGPOST=0.9979;RSQ=0.6185;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70113675 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.984;LDAF=0.4267;AVGPOST=0.9970;RSQ=0.9947;ERATE=0.0006;THETA=0.0006;AC=933;AN=2184 GT:DS:GL:BD 0.42719781 0 1 70113676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0040;AVGPOST=0.9997;RSQ=0.9734;ERATE=0.0003;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70113747 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70113809 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4285;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0008;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70113849 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.6973;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70114002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4285;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70114026 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70114062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4281;AVGPOST=0.9982;RSQ=0.9968;ERATE=0.0006;THETA=0.0006;AC=935;AN=2184 GT:DS:GL:BD 0.42811355 0 1 70114068 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8020;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70114109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9711;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70114158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0045;AVGPOST=0.9981;RSQ=0.8353;ERATE=0.0006;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70114388 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7417;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70114440 rs35224910 CT C 43918 PASS INDEL;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4300;AVGPOST=0.9964;RSQ=0.9937;ERATE=0.0011;THETA=0.0002;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 70114444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4927;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70114592 . T TC 15864 PASS INDEL;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.4282;AVGPOST=0.9932;RSQ=0.9883;ERATE=0.0006;THETA=0.0023;AC=936;AN=2184 GT:DS:GL:BD 0.42857143 0 1 70114736 rs34076822 C CT 48827 PASS INDEL;BAVGPOST=0.983;BRSQ=0.968;LDAF=0.4269;AVGPOST=0.9955;RSQ=0.9920;ERATE=0.0004;THETA=0.0005;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 70114737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.674;LDAF=0.0033;AVGPOST=0.9954;RSQ=0.5184;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70114760 . CA C 1177 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0326;AVGPOST=0.9944;RSQ=0.9314;ERATE=0.0007;THETA=0.0003;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70114766 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.752;LDAF=0.0694;AVGPOST=0.9445;RSQ=0.6617;ERATE=0.0161;THETA=0.0007;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 70114769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.967;LDAF=0.4239;AVGPOST=0.9907;RSQ=0.9847;ERATE=0.0010;THETA=0.0010;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 70114847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.969;LDAF=0.3785;AVGPOST=0.9885;RSQ=0.9819;ERATE=0.0007;THETA=0.0011;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 70114879 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.968;BRSQ=0.938;LDAF=0.4216;AVGPOST=0.9878;RSQ=0.9800;ERATE=0.0010;THETA=0.0003;AC=929;AN=2184 GT:DS:GL:BD 0.42536631 0 1 70114935 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7286;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70115045 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.0763;AVGPOST=0.9989;RSQ=0.9941;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70115068 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8218;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70115270 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5181;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115282 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115431 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0025;AVGPOST=0.9974;RSQ=0.5894;ERATE=0.0010;THETA=0.0043;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70115444 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4299;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0007;THETA=0.0008;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 70115481 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4274;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115502 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115527 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7089;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115568 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0235;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70115626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9279;ERATE=0.0013;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70115671 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=1.0000;RSQ=0.9993;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 70115685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.947;LDAF=0.0185;AVGPOST=0.9972;RSQ=0.9424;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70115709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 70115755 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0033;AVGPOST=0.9995;RSQ=0.9252;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70115834 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.4291;AVGPOST=0.9974;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=937;AN=2184 GT:DS:GL:BD 0.42902932 0 1 70115871 rs3049276 CTGTGTT C 6654 PASS INDEL;BAVGPOST=0.997;BRSQ=0.943;LDAF=0.0279;AVGPOST=0.9956;RSQ=0.9471;ERATE=0.0004;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70115962 rs35832215 CACA C 24 PASS INDEL;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5281;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70115978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8853;ERATE=0.0007;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70116010 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9999;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70116028 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70116122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9958;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70116343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.7045;AVGPOST=0.9967;RSQ=0.9940;ERATE=0.0007;THETA=0.0006;AC=1539;AN=2184 GT:DS:GL:BD 0.70467031 1 1 70116417 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.2211;AVGPOST=0.9981;RSQ=0.9953;ERATE=0.0005;THETA=0.0006;AC=483;AN=2184 GT:DS:GL:BD 0.22115384 0 1 70116433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70116543 . CCT C 13 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0040;AVGPOST=0.9956;RSQ=0.5638;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70116561 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0079;AVGPOST=0.9979;RSQ=0.8895;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70116581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8366;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70116768 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0022;AVGPOST=0.9971;RSQ=0.4786;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70116836 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70116892 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0321;AVGPOST=0.9996;RSQ=0.9940;ERATE=0.0003;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 70116907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.707;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6104;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70116932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0194;AVGPOST=0.9986;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 70116974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8519;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70117024 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.8629;AVGPOST=0.9981;RSQ=0.9938;ERATE=0.0003;THETA=0.0002;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 70117078 . G GAT 306 PASS INDEL;BAVGPOST=0.997;BRSQ=0.662;LDAF=0.0042;AVGPOST=0.9971;RSQ=0.7074;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70117087 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.994;LDAF=0.4832;AVGPOST=0.9950;RSQ=0.9932;ERATE=0.0008;THETA=0.0004;AC=1056;AN=2184 GT:DS:GL:BD 0.48351648 0 1 70117103 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8197;AVGPOST=0.9989;RSQ=0.9967;ERATE=0.0003;THETA=0.0004;AC=1792;AN=2184 GT:DS:GL:BD 0.82051283 1 1 70117149 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0143;AVGPOST=0.9996;RSQ=0.9875;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70117164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70117198 . A AC 31 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.6662;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70117229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6292;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70117247 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4562;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70117294 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0046;AVGPOST=0.9979;RSQ=0.8130;ERATE=0.0005;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70117301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0537;AVGPOST=0.9995;RSQ=0.9951;ERATE=0.0003;THETA=0.0002;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 70117318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0023;AVGPOST=0.9983;RSQ=0.7015;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70117361 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0471;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70117488 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7841;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70117511 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5782;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70117524 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.8067;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70117690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9770;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70117743 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0082;AVGPOST=0.9979;RSQ=0.9210;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70117899 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1393;AVGPOST=0.9988;RSQ=0.9960;ERATE=0.0004;THETA=0.0003;AC=305;AN=2184 GT:DS:GL:BD 0.13965201 0 1 70117989 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118108 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5532;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8665;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70118174 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6268;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118178 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5509;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118185 . AC A 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5550;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2256;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=494;AN=2184 GT:DS:GL:BD 0.22619048 0 1 70118238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0536;AVGPOST=0.9997;RSQ=0.9976;ERATE=0.0002;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 70118515 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5095;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0036;AVGPOST=0.9992;RSQ=0.8928;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70118640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.923;LDAF=0.0138;AVGPOST=0.9993;RSQ=0.9771;ERATE=0.0004;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70118735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118798 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70118854 rs113691375 T TAGC 119660 PASS INDEL;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.7013;AVGPOST=0.9771;RSQ=0.9646;ERATE=0.0044;THETA=0.0003;AC=1545;AN=2184 GT:DS:GL:BD 0.70741761 1 1 70118934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.977;LDAF=0.0750;AVGPOST=0.9966;RSQ=0.9816;ERATE=0.0005;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70118956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5692;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70118964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0148;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70119084 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6417;ERATE=0.0006;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70119265 . G GT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6418;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70119570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.810;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9064;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70119654 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7813;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70119824 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.7054;AVGPOST=0.9985;RSQ=0.9973;ERATE=0.0004;THETA=0.0002;AC=1542;AN=2184 GT:DS:GL:BD 0.70604396 1 1 70119830 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.762;LDAF=0.0019;AVGPOST=0.9994;RSQ=0.8470;ERATE=0.0002;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70119913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0046;AVGPOST=0.9988;RSQ=0.9034;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70119950 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.8633;AVGPOST=0.9989;RSQ=0.9960;ERATE=0.0002;THETA=0.0001;AC=1888;AN=2184 GT:DS:GL:BD 0.86446887 1 1 70120023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.608;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8527;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70120112 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.855;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7640;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70120128 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0049;AVGPOST=0.9978;RSQ=0.8235;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70120154 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.841;LDAF=0.0094;AVGPOST=0.9953;RSQ=0.8011;ERATE=0.0008;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70120172 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0107;AVGPOST=0.9967;RSQ=0.8747;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70120321 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0162;AVGPOST=0.9994;RSQ=0.9856;ERATE=0.0002;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70120406 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.7716;AVGPOST=0.9985;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1687;AN=2184 GT:DS:GL:BD 0.77243590 1 1 70120434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0004;AVGPOST=0.9993;RSQ=0.4126;ERATE=0.0003;THETA=0.0002;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70120488 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0070;AVGPOST=0.9991;RSQ=0.9430;ERATE=0.0002;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70120575 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70120600 rs71569072 ACCCTTTT A 28862 PASS INDEL;BAVGPOST=0.977;BRSQ=0.909;LDAF=0.1323;AVGPOST=0.9926;RSQ=0.9769;ERATE=0.0006;THETA=0.0002;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 70120610 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7048;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70120641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.6117;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70120714 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70120807 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4680;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70120910 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.0628;AVGPOST=0.9985;RSQ=0.9906;ERATE=0.0002;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70121035 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0475;AVGPOST=0.9990;RSQ=0.9934;ERATE=0.0003;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70121058 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70121078 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6213;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70121079 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70121225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7950;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70121241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3332;AVGPOST=0.9974;RSQ=0.9962;ERATE=0.0004;THETA=0.0005;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 70121308 . CATG C 2928 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0161;AVGPOST=0.9990;RSQ=0.9752;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70121326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8450;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70121569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0918;AVGPOST=0.9976;RSQ=0.9888;ERATE=0.0003;THETA=0.0005;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 70121581 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2441;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0004;THETA=0.0004;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 70121601 . TA T 338 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.8691;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70121645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9425;ERATE=0.0002;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70121697 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3186;AVGPOST=0.9892;RSQ=0.9809;ERATE=0.0021;THETA=0.0009;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 70121925 . GTGA G 2281 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0143;AVGPOST=0.9972;RSQ=0.9134;ERATE=0.0004;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70121949 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70121965 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.763;LDAF=0.0051;AVGPOST=0.9979;RSQ=0.8134;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70122018 . GAT G 106 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0028;AVGPOST=0.9986;RSQ=0.8005;ERATE=0.0004;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70122110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.588;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5752;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70122325 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.526;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4549;ERATE=0.0007;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70122352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.592;LDAF=0.0122;AVGPOST=0.9901;RSQ=0.6599;ERATE=0.0011;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70122407 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.541;LDAF=0.0352;AVGPOST=0.9678;RSQ=0.6440;ERATE=0.0016;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70122413 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4617;AVGPOST=0.9956;RSQ=0.9933;ERATE=0.0005;THETA=0.0004;AC=1010;AN=2184 GT:DS:GL:BD 0.46245420 0 1 70122616 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.801;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9263;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70122675 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70122716 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8312;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70122890 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0026;AVGPOST=0.9990;RSQ=0.8340;ERATE=0.0002;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70122945 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1277;AVGPOST=0.9994;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 70122951 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70122961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5077;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70123065 rs67701250 CACTT C 20311 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1304;AVGPOST=0.9967;RSQ=0.9906;ERATE=0.0004;THETA=0.0007;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 70123190 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.800;LDAF=0.0071;AVGPOST=0.9975;RSQ=0.8518;ERATE=0.0002;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70123203 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.9087;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70123211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.855;LDAF=0.0102;AVGPOST=0.9989;RSQ=0.9517;ERATE=0.0003;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70123378 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9750;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70123399 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0106;AVGPOST=0.9993;RSQ=0.9756;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70123536 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.1034;AVGPOST=0.9963;RSQ=0.9858;ERATE=0.0007;THETA=0.0007;AC=224;AN=2184 GT:DS:GL:BD 0.10256410 0 1 70123550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0023;AVGPOST=0.9996;RSQ=0.9234;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70123580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6837;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70123614 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.865;LDAF=0.0195;AVGPOST=0.9957;RSQ=0.9049;ERATE=0.0004;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70123623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0033;AVGPOST=0.9985;RSQ=0.8240;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70123665 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0837;AVGPOST=0.9992;RSQ=0.9956;ERATE=0.0003;THETA=0.0005;AC=182;AN=2184 GT:DS:GL:BD 0.08333334 0 1 70123678 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9474;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70123706 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0030;AVGPOST=0.9990;RSQ=0.8606;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70123723 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.921;LDAF=0.0591;AVGPOST=0.9967;RSQ=0.9775;ERATE=0.0003;THETA=0.0004;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 70123828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1040;AVGPOST=0.9983;RSQ=0.9916;ERATE=0.0004;THETA=0.0004;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 70123930 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.868;LDAF=0.0152;AVGPOST=0.9939;RSQ=0.8435;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70123972 . G GTT 10721 PASS INDEL;BAVGPOST=0.994;BRSQ=0.952;LDAF=0.0752;AVGPOST=0.9959;RSQ=0.9759;ERATE=0.0006;THETA=0.0002;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70124050 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.720;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8454;ERATE=0.0004;THETA=0.0001;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70124111 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1284;AVGPOST=0.9977;RSQ=0.9915;ERATE=0.0006;THETA=0.0004;AC=278;AN=2184 GT:DS:GL:BD 0.12728938 0 1 70124232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5692;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70124407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2702;AVGPOST=0.9936;RSQ=0.9875;ERATE=0.0006;THETA=0.0002;AC=588;AN=2184 GT:DS:GL:BD 0.26923078 0 1 70124421 . A AT 1178 PASS INDEL;BAVGPOST=0.996;BRSQ=0.887;LDAF=0.0171;AVGPOST=0.9953;RSQ=0.8907;ERATE=0.0005;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70124577 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.4769;AVGPOST=0.9942;RSQ=0.9907;ERATE=0.0005;THETA=0.0003;AC=1042;AN=2184 GT:DS:GL:BD 0.47710621 0 1 70124602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1034;AVGPOST=0.9985;RSQ=0.9935;ERATE=0.0005;THETA=0.0008;AC=225;AN=2184 GT:DS:GL:BD 0.10302198 0 1 70124716 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5299;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70124918 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70124986 . T TA 35 PASS INDEL;BAVGPOST=0.999;BRSQ=0.612;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5731;ERATE=0.0006;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70125162 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.9079;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70125240 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5931;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70125249 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0069;AVGPOST=0.9986;RSQ=0.9202;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70125511 . C CA 12995 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3517;AVGPOST=0.9966;RSQ=0.9930;ERATE=0.0004;THETA=0.0007;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 70125709 rs35853587 A AC 41864 PASS INDEL;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.3521;AVGPOST=0.9944;RSQ=0.9885;ERATE=0.0009;THETA=0.0006;AC=766;AN=2184 GT:DS:GL:BD 0.35073259 0 1 70125711 . AT A 10 PASS INDEL;BAVGPOST=0.999;BRSQ=0.710;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5831;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70125731 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.3645;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70125733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.746;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5142;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70125743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0062;AVGPOST=0.9983;RSQ=0.8714;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70125767 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4139;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70125811 . G GA 205 PASS INDEL;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0071;AVGPOST=0.9955;RSQ=0.7599;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70125888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.980;LDAF=0.2234;AVGPOST=0.9936;RSQ=0.9854;ERATE=0.0007;THETA=0.0002;AC=489;AN=2184 GT:DS:GL:BD 0.22390109 0 1 70125904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9768;ERATE=0.0002;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70125948 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.711;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6621;ERATE=0.0002;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70125961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70125970 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0102;AVGPOST=0.9998;RSQ=0.9900;ERATE=0.0002;THETA=0.0003;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70126053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.793;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70126063 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4789;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0007;THETA=0.0005;AC=1044;AN=2184 GT:DS:GL:BD 0.47802198 0 1 70126099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0018;AVGPOST=0.9994;RSQ=0.8545;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70126223 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.0841;AVGPOST=0.9984;RSQ=0.9924;ERATE=0.0004;THETA=0.0005;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 70126312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5809;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70126411 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0072;AVGPOST=0.9993;RSQ=0.9593;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70126426 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0021;AVGPOST=0.9971;RSQ=0.4968;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70126469 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.842;LDAF=0.0026;AVGPOST=0.9986;RSQ=0.8110;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70126711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0293;AVGPOST=0.9988;RSQ=0.9824;ERATE=0.0004;THETA=0.0052;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70126715 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.8926;ERATE=0.0004;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70126844 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0263;AVGPOST=0.9994;RSQ=0.9911;ERATE=0.0003;THETA=0.0002;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70127042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6527;AVGPOST=0.9959;RSQ=0.9930;ERATE=0.0004;THETA=0.0073;AC=1423;AN=2184 GT:DS:GL:BD 0.65155679 1 1 70127077 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0004;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70127126 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2023;AVGPOST=0.9952;RSQ=0.9906;ERATE=0.0015;THETA=0.0016;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 70127207 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70127226 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6841;ERATE=0.0003;THETA=0.0023;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70127304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0039;AVGPOST=0.9988;RSQ=0.8830;ERATE=0.0004;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70127431 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0046;AVGPOST=0.9994;RSQ=0.9485;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70127490 . AC A 37498 PASS INDEL;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.8715;AVGPOST=0.9922;RSQ=0.9759;ERATE=0.0008;THETA=0.0038;AC=1912;AN=2184 GT:DS:GL:BD 0.87545788 1 1 70127626 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.8688;AVGPOST=0.9869;RSQ=0.9638;ERATE=0.0015;THETA=0.0003;AC=1908;AN=2184 GT:DS:GL:BD 0.87362635 1 1 70127627 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.882;LDAF=0.8313;AVGPOST=0.9411;RSQ=0.8556;ERATE=0.0165;THETA=0.0072;AC=1846;AN=2184 GT:DS:GL:BD 0.84523809 1 1 70127634 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7423;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70127661 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7683;ERATE=0.0004;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70127666 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5913;AVGPOST=0.9954;RSQ=0.9930;ERATE=0.0006;THETA=0.0003;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 70127734 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.1690;AVGPOST=0.9972;RSQ=0.9922;ERATE=0.0004;THETA=0.0005;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 70127746 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1203;AVGPOST=0.9978;RSQ=0.9915;ERATE=0.0004;THETA=0.0005;AC=262;AN=2184 GT:DS:GL:BD 0.11996337 0 1 70127904 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0259;AVGPOST=0.9980;RSQ=0.9740;ERATE=0.0004;THETA=0.0007;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 70127919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5526;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70127975 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0048;AVGPOST=0.9994;RSQ=0.9437;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70127976 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.977;LDAF=0.1975;AVGPOST=0.9941;RSQ=0.9874;ERATE=0.0007;THETA=0.0005;AC=433;AN=2184 GT:DS:GL:BD 0.19826007 0 1 70128053 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.1965;AVGPOST=0.9953;RSQ=0.9900;ERATE=0.0004;THETA=0.0002;AC=431;AN=2184 GT:DS:GL:BD 0.19734432 0 1 70128061 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0065;AVGPOST=0.9979;RSQ=0.8783;ERATE=0.0005;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70128062 . AAAT A 7 PASS INDEL;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0071;AVGPOST=0.9926;RSQ=0.5678;ERATE=0.0022;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70128121 . CT C 1568 PASS INDEL;BAVGPOST=0.997;BRSQ=0.955;LDAF=0.0291;AVGPOST=0.9946;RSQ=0.9299;ERATE=0.0005;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70128279 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9814;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70128336 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5687;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70128339 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7232;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70128438 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.866;LDAF=0.0120;AVGPOST=0.9964;RSQ=0.8810;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70128465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6535;ERATE=0.0004;THETA=0.0001;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70128579 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6262;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70128774 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4946;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70129035 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70129065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9205;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70129080 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9532;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70129123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6124;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70129157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70129215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0050;AVGPOST=0.9997;RSQ=0.9754;ERATE=0.0003;THETA=0.0009;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70129239 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1981;AVGPOST=0.9969;RSQ=0.9929;ERATE=0.0005;THETA=0.0029;AC=434;AN=2184 GT:DS:GL:BD 0.19871795 0 1 70129614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7120;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70129663 rs34925840 GA G 5247 PASS INDEL;BAVGPOST=0.985;BRSQ=0.947;LDAF=0.1403;AVGPOST=0.9872;RSQ=0.9635;ERATE=0.0004;THETA=0.0004;AC=304;AN=2184 GT:DS:GL:BD 0.13919415 0 1 70129678 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.954;LDAF=0.1377;AVGPOST=0.9864;RSQ=0.9601;ERATE=0.0003;THETA=0.0009;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 70129682 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.954;LDAF=0.1359;AVGPOST=0.9849;RSQ=0.9563;ERATE=0.0003;THETA=0.0003;AC=295;AN=2184 GT:DS:GL:BD 0.13507326 0 1 70129683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.752;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7935;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70129699 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0400;AVGPOST=0.9969;RSQ=0.9737;ERATE=0.0004;THETA=0.0002;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70129704 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7376;AVGPOST=0.9982;RSQ=0.9962;ERATE=0.0005;THETA=0.0003;AC=1613;AN=2184 GT:DS:GL:BD 0.73855311 1 1 70129771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0099;AVGPOST=0.9994;RSQ=0.9718;ERATE=0.0003;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70129800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0901;AVGPOST=0.9952;RSQ=0.9769;ERATE=0.0004;THETA=0.0002;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 70129864 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5845;ERATE=0.0004;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70129873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8212;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70129925 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70129934 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0063;AVGPOST=0.9990;RSQ=0.9259;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70130023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.936;LDAF=0.0354;AVGPOST=0.9943;RSQ=0.9369;ERATE=0.0004;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70130046 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0189;AVGPOST=0.9989;RSQ=0.9776;ERATE=0.0005;THETA=0.0004;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 70130132 . TA T 87 PASS INDEL;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5444;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70130134 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1194;AVGPOST=0.9996;RSQ=0.9984;ERATE=0.0004;THETA=0.0006;AC=260;AN=2184 GT:DS:GL:BD 0.11904762 0 1 70130166 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70130176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0369;AVGPOST=0.9989;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70130186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70130295 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0050;AVGPOST=0.9989;RSQ=0.9011;ERATE=0.0004;THETA=0.0019;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70130338 . CT C 36 PASS INDEL;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6037;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70130360 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6056;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=1325;AN=2184 GT:DS:GL:BD 0.60668498 1 1 70130442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.8034;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70130497 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70130510 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0160;AVGPOST=0.9996;RSQ=0.9904;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70130603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0159;AVGPOST=0.9998;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70130625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.909;LDAF=0.0118;AVGPOST=0.9960;RSQ=0.8769;ERATE=0.0005;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70130632 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70130656 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9032;ERATE=0.0003;THETA=0.0016;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70130733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.1184;AVGPOST=0.9971;RSQ=0.9904;ERATE=0.0004;THETA=0.0003;AC=257;AN=2184 GT:DS:GL:BD 0.11767399 0 1 70130851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.992;LDAF=0.3573;AVGPOST=0.9943;RSQ=0.9912;ERATE=0.0003;THETA=0.0005;AC=780;AN=2184 GT:DS:GL:BD 0.35714287 0 1 70130884 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5614;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70130890 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70130976 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70131049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6813;ERATE=0.0008;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70131136 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0060;AVGPOST=0.9983;RSQ=0.8722;ERATE=0.0006;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70131176 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.878;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8708;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70131254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.617;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4792;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70131353 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0028;AVGPOST=0.9979;RSQ=0.6863;ERATE=0.0004;THETA=0.0001;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70131416 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0245;AVGPOST=0.9967;RSQ=0.9454;ERATE=0.0005;THETA=0.0009;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 70131646 . AT A 20 PASS INDEL;BAVGPOST=0.980;BRSQ=0.372;LDAF=0.0408;AVGPOST=0.9416;RSQ=0.4288;ERATE=0.0073;THETA=0.0010;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70131793 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.717;LDAF=0.0027;AVGPOST=0.9953;RSQ=0.3230;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70131806 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.750;LDAF=0.0070;AVGPOST=0.9964;RSQ=0.7910;ERATE=0.0005;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70131822 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.982;LDAF=0.1087;AVGPOST=0.9917;RSQ=0.9687;ERATE=0.0004;THETA=0.0006;AC=239;AN=2184 GT:DS:GL:BD 0.10943224 0 1 70131880 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0141;AVGPOST=0.9957;RSQ=0.8572;ERATE=0.0007;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70131977 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0112;AVGPOST=0.9992;RSQ=0.9666;ERATE=0.0004;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70132028 . G GAAGTTTTCT 217 PASS INDEL;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0030;AVGPOST=0.9948;RSQ=0.3627;ERATE=0.0006;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132146 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9057;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70132151 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0212;AVGPOST=0.9979;RSQ=0.9605;ERATE=0.0004;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70132195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.737;LDAF=0.0038;AVGPOST=0.9979;RSQ=0.7782;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70132257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0110;AVGPOST=0.9997;RSQ=0.9879;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70132262 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9579;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70132442 . T TA 214 PASS INDEL;BAVGPOST=0.999;BRSQ=0.804;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7469;ERATE=0.0005;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70132630 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70132639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132679 . TA T 127 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7831;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70132723 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132772 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70132969 . T TA 118 PASS INDEL;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0026;AVGPOST=0.9977;RSQ=0.6927;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70133019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=0.9998;RSQ=0.8857;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70133300 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70133314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0011;AVGPOST=0.9990;RSQ=0.6211;ERATE=0.0006;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70133316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133385 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6747;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6386;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133632 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8327;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70133673 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7916;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70133787 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0060;AVGPOST=0.9987;RSQ=0.9051;ERATE=0.0003;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70133817 . G GGTGA 8389 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0298;AVGPOST=0.9992;RSQ=0.9871;ERATE=0.0004;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 70133930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133944 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7784;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70133953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0101;AVGPOST=0.9995;RSQ=0.9809;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70133962 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9285;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70133981 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8366;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70134009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=0.9995;RSQ=0.9674;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70134022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.931;LDAF=0.0144;AVGPOST=0.9952;RSQ=0.8913;ERATE=0.0006;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70134043 . G GA 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4267;ERATE=0.0004;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134065 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7719;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134128 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.9231;AVGPOST=0.9977;RSQ=0.9860;ERATE=0.0004;THETA=0.0007;AC=2017;AN=2184 GT:DS:GL:BD 0.92353481 1 1 70134189 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0152;AVGPOST=0.9995;RSQ=0.9847;ERATE=0.0003;THETA=0.0014;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70134195 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0113;AVGPOST=0.9978;RSQ=0.9272;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70134212 . AC A 438 PASS INDEL;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0024;AVGPOST=0.9980;RSQ=0.6776;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70134254 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5763;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3145;AVGPOST=0.9950;RSQ=0.9919;ERATE=0.0005;THETA=0.0006;AC=687;AN=2184 GT:DS:GL:BD 0.31456044 0 1 70134318 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0152;AVGPOST=0.9996;RSQ=0.9884;ERATE=0.0003;THETA=0.0004;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70134400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0231;AVGPOST=0.9991;RSQ=0.9839;ERATE=0.0003;THETA=0.0005;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70134504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0003;AVGPOST=0.9996;RSQ=0.5697;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70134668 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.9128;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70134717 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134731 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7903;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70134742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70134945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70134952 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70135007 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70135037 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70135167 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70135245 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7066;ERATE=0.0005;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70135254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70135360 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9997;RSQ=0.9658;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70135440 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9490;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70135494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0100;AVGPOST=0.9940;RSQ=0.7847;ERATE=0.0004;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70135619 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6401;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70135639 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6983;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70135781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7525;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70135804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5801;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70135882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70135923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70135946 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0129;AVGPOST=0.9990;RSQ=0.9706;ERATE=0.0003;THETA=0.0008;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70135953 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0052;AVGPOST=0.9975;RSQ=0.8307;ERATE=0.0004;THETA=0.0009;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70135991 . AG A 6 PASS INDEL;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5505;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70136016 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70136039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6054;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70136062 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70136100 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9988;RSQ=0.9690;ERATE=0.0003;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70136268 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.853;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7524;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70136294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0153;AVGPOST=0.9992;RSQ=0.9771;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70136314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0209;AVGPOST=0.9988;RSQ=0.9807;ERATE=0.0004;THETA=0.0008;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70136382 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70136385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9986;RSQ=0.8090;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70136552 . AAAAC A 181 PASS INDEL;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0032;AVGPOST=0.9972;RSQ=0.6470;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70136554 . CA C 55 PASS INDEL;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0019;AVGPOST=0.9978;RSQ=0.5460;ERATE=0.0008;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70136566 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70136607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0113;AVGPOST=0.9972;RSQ=0.9118;ERATE=0.0004;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70136608 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.733;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70136618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6674;ERATE=0.0002;THETA=0.0131;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70136818 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.8801;ERATE=0.0003;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70136870 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.768;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5894;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70136964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.604;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5141;ERATE=0.0004;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70137057 . CAT C 13130 PASS INDEL;BAVGPOST=0.964;BRSQ=0.658;LDAF=0.9511;AVGPOST=0.9669;RSQ=0.7167;ERATE=0.0022;THETA=0.0107;AC=2088;AN=2184 GT:DS:GL:BD 0.95604396 1 1 70137090 . TA T 283 PASS INDEL;BAVGPOST=0.997;BRSQ=0.891;LDAF=0.0128;AVGPOST=0.9936;RSQ=0.8026;ERATE=0.0007;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70137102 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.896;LDAF=0.0262;AVGPOST=0.9803;RSQ=0.7085;ERATE=0.0035;THETA=0.0036;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70137105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0119;AVGPOST=0.9973;RSQ=0.9149;ERATE=0.0005;THETA=0.0131;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70137138 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0111;AVGPOST=0.9976;RSQ=0.9020;ERATE=0.0007;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70137184 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0587;AVGPOST=0.9973;RSQ=0.9812;ERATE=0.0006;THETA=0.0005;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 70137350 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7085;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70137393 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9997;RSQ=0.9728;ERATE=0.0003;THETA=0.0011;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70137421 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7796;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70137470 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0042;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70137522 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70137530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0574;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0010;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 70137543 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0002;THETA=0.0053;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70137562 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0125;AVGPOST=0.9982;RSQ=0.9485;ERATE=0.0004;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70137708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.714;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.6146;ERATE=0.0004;THETA=0.0015;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70137782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7595;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70137788 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0053;AVGPOST=0.9983;RSQ=0.8818;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70137828 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70137831 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9385;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70137941 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70137977 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6609;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70137978 . TA T 91 PASS INDEL;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.6311;ERATE=0.0004;THETA=0.0037;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70138038 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0049;AVGPOST=0.9986;RSQ=0.8887;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70138186 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8883;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70138227 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.3903;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70138290 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.782;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5938;ERATE=0.0004;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70138291 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0358;AVGPOST=0.9966;RSQ=0.9585;ERATE=0.0004;THETA=0.0014;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70138370 rs76796374 AG A 75704 PASS INDEL;BAVGPOST=0.999;BRSQ=0.552;LDAF=0.9985;AVGPOST=0.9982;RSQ=0.4869;ERATE=0.0004;THETA=0.0078;AC=2182;AN=2184 GT:DS:GL:BD 0.99908423 1 1 70138444 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0577;AVGPOST=0.9990;RSQ=0.9936;ERATE=0.0003;THETA=0.0013;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 70138808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70138830 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.717;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7398;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70138854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0347;AVGPOST=0.9991;RSQ=0.9905;ERATE=0.0003;THETA=0.0032;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70138878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.977;LDAF=0.6865;AVGPOST=0.9811;RSQ=0.9682;ERATE=0.0008;THETA=0.0003;AC=1497;AN=2184 GT:DS:GL:BD 0.68543959 1 1 70138917 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0061;AVGPOST=0.9988;RSQ=0.9141;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70138936 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0574;AVGPOST=0.9985;RSQ=0.9912;ERATE=0.0003;THETA=0.0006;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 70138980 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.972;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9701;ERATE=0.0002;THETA=0.0005;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70139017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.832;LDAF=0.0040;AVGPOST=0.9990;RSQ=0.9035;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70139134 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5035;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139152 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2312;AVGPOST=0.9934;RSQ=0.9878;ERATE=0.0004;THETA=0.0004;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 70139156 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5730;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139163 rs11409918 T TA 7890 PASS INDEL;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0603;AVGPOST=0.9968;RSQ=0.9791;ERATE=0.0005;THETA=0.0002;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 70139178 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0643;AVGPOST=0.9992;RSQ=0.9942;ERATE=0.0004;THETA=0.0004;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 70139190 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6026;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70139244 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0033;AVGPOST=0.9965;RSQ=0.5980;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70139253 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0365;AVGPOST=0.9987;RSQ=0.9836;ERATE=0.0004;THETA=0.0004;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 70139258 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.981;LDAF=0.1380;AVGPOST=0.9915;RSQ=0.9733;ERATE=0.0005;THETA=0.0002;AC=301;AN=2184 GT:DS:GL:BD 0.13782051 0 1 70139322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0580;AVGPOST=0.9993;RSQ=0.9946;ERATE=0.0003;THETA=0.0006;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 70139326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2306;AVGPOST=0.9950;RSQ=0.9910;ERATE=0.0004;THETA=0.0004;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 70139413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.6519;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139423 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139480 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9996;RSQ=0.9752;ERATE=0.0003;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70139517 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70139590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8449;ERATE=0.0002;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70139754 . TG T 42 PASS INDEL;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.5928;ERATE=0.0007;THETA=0.0016;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70139898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0600;AVGPOST=0.9954;RSQ=0.9703;ERATE=0.0006;THETA=0.0004;AC=127;AN=2184 GT:DS:GL:BD 0.05815018 0 1 70140046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9992;RSQ=0.9294;ERATE=0.0004;THETA=0.0027;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70140135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9382;ERATE=0.0003;THETA=0.0013;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70140196 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0579;AVGPOST=0.9988;RSQ=0.9916;ERATE=0.0003;THETA=0.0015;AC=126;AN=2184 GT:DS:GL:BD 0.05769231 0 1 70140275 . AAT A 782 PASS INDEL;BAVGPOST=0.970;BRSQ=0.813;LDAF=0.0911;AVGPOST=0.9477;RSQ=0.7587;ERATE=0.0111;THETA=0.0003;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 70140456 rs71880536 AT A 6801 PASS INDEL;BAVGPOST=0.988;BRSQ=0.909;LDAF=0.0569;AVGPOST=0.9901;RSQ=0.9329;ERATE=0.0015;THETA=0.0011;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 70140457 . A AC 112 PASS INDEL;BAVGPOST=0.852;BRSQ=0.113;LDAF=0.1348;AVGPOST=0.8160;RSQ=0.3841;ERATE=0.0048;THETA=0.0005;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 70140463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0935;AVGPOST=0.9960;RSQ=0.9850;ERATE=0.0003;THETA=0.0039;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 70140482 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7717;ERATE=0.0003;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70140491 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0726;AVGPOST=0.9972;RSQ=0.9854;ERATE=0.0003;THETA=0.0010;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70140826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6116;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70140875 . ATC A 67 PASS INDEL;BAVGPOST=0.999;BRSQ=0.546;LDAF=0.0018;AVGPOST=0.9972;RSQ=0.4103;ERATE=0.0005;THETA=0.0082;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70140961 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.977;LDAF=0.0629;AVGPOST=0.9928;RSQ=0.9590;ERATE=0.0006;THETA=0.0025;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70141032 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6264;ERATE=0.0005;THETA=0.0065;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70141258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.925;LDAF=0.0171;AVGPOST=0.9938;RSQ=0.8495;ERATE=0.0023;THETA=0.0060;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70141279 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.784;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7692;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70141436 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.686;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4916;ERATE=0.0004;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70141476 . TATA T 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5628;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70141564 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0126;AVGPOST=0.9972;RSQ=0.9065;ERATE=0.0006;THETA=0.0043;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70141589 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9355;ERATE=0.0002;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70141627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.795;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.6056;ERATE=0.0003;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70141669 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6755;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70141762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0091;AVGPOST=0.9974;RSQ=0.8989;ERATE=0.0004;THETA=0.0030;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70141777 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9250;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70142002 . ATAG A 244 PASS INDEL;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0036;AVGPOST=0.9986;RSQ=0.8440;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70142110 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0150;AVGPOST=0.9992;RSQ=0.9760;ERATE=0.0004;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70142155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0024;AVGPOST=0.9984;RSQ=0.7000;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70142376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.927;LDAF=0.0096;AVGPOST=0.9985;RSQ=0.9313;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70142583 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4800;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70142618 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0220;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70142704 . T TA 61 PASS INDEL;BAVGPOST=0.998;BRSQ=0.773;LDAF=0.0036;AVGPOST=0.9980;RSQ=0.7469;ERATE=0.0008;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70142724 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.736;LDAF=0.0030;AVGPOST=0.9970;RSQ=0.6149;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70142733 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9993;RSQ=0.9641;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70142766 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5914;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70142786 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9996;RSQ=0.9539;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70142981 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.719;LDAF=0.0065;AVGPOST=0.9931;RSQ=0.5931;ERATE=0.0008;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70143016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.759;LDAF=0.0114;AVGPOST=0.9947;RSQ=0.8293;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70143019 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.507;LDAF=0.0060;AVGPOST=0.9962;RSQ=0.7512;ERATE=0.0005;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70143347 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0355;AVGPOST=0.9987;RSQ=0.9825;ERATE=0.0004;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70143400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4138;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70143447 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.5807;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70143475 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0028;AVGPOST=0.9972;RSQ=0.6529;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70143534 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6009;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70143592 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9925;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70143593 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6975;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70143668 . TA T 169 PASS INDEL;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0023;AVGPOST=0.9984;RSQ=0.7262;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70143778 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8715;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70143856 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0033;AVGPOST=0.9980;RSQ=0.7777;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70143988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.896;LDAF=0.0094;AVGPOST=0.9979;RSQ=0.9078;ERATE=0.0004;THETA=0.0007;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70144236 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.996;LDAF=0.4231;AVGPOST=0.9965;RSQ=0.9944;ERATE=0.0004;THETA=0.0005;AC=925;AN=2184 GT:DS:GL:BD 0.42353481 0 1 70144238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8064;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70144245 . A AG 442 PASS INDEL;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0091;AVGPOST=0.9991;RSQ=0.9524;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70144395 . A AAGC 94 PASS INDEL;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0025;AVGPOST=0.9965;RSQ=0.3916;ERATE=0.0007;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70144412 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.8335;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70144467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9991;RSQ=0.8706;ERATE=0.0004;THETA=0.0010;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70144471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9994;RSQ=0.9666;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70144541 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9612;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70144558 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70144585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0095;AVGPOST=0.9986;RSQ=0.9483;ERATE=0.0003;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70144599 . GT G 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5509;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70144686 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0044;AVGPOST=0.9974;RSQ=0.7908;ERATE=0.0007;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70144704 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8702;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70144709 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.1382;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70144737 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.702;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6954;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70144878 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0031;AVGPOST=0.9985;RSQ=0.8131;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70144930 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0217;AVGPOST=0.9995;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70144965 . AC A 2626 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0192;AVGPOST=0.9991;RSQ=0.9785;ERATE=0.0003;THETA=0.0007;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 70145007 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.6279;AVGPOST=0.9931;RSQ=0.9887;ERATE=0.0012;THETA=0.0006;AC=1372;AN=2184 GT:DS:GL:BD 0.62820512 1 1 70145170 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0096;AVGPOST=0.9993;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70145233 . AC A 63 PASS INDEL;BAVGPOST=0.996;BRSQ=0.799;LDAF=0.0086;AVGPOST=0.9961;RSQ=0.8247;ERATE=0.0005;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70145240 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0148;AVGPOST=0.9989;RSQ=0.9644;ERATE=0.0005;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70145241 rs35232483 T TA 20306 PASS INDEL;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.1943;AVGPOST=0.9972;RSQ=0.9932;ERATE=0.0005;THETA=0.0006;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 70145289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6550;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70145447 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6749;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145459 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5701;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70145465 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0062;AVGPOST=0.9985;RSQ=0.8935;ERATE=0.0004;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70145467 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70145574 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8586;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6789;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145703 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6890;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145707 . A AT 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6361;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145735 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0151;AVGPOST=0.9991;RSQ=0.9734;ERATE=0.0003;THETA=0.0003;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70145782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9990;RSQ=0.9481;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70145798 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8325;ERATE=0.0003;THETA=0.0015;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70145808 . AT A 1032 PASS INDEL;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0168;AVGPOST=0.9973;RSQ=0.9269;ERATE=0.0005;THETA=0.0009;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70145898 . CTT C 160 PASS INDEL;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7148;ERATE=0.0003;THETA=0.0016;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70145922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8689;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70145945 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6934;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70146042 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.921;LDAF=0.0081;AVGPOST=0.9978;RSQ=0.8888;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70146059 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7795;ERATE=0.0004;THETA=0.0018;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70146139 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70146157 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9997;RSQ=0.9850;ERATE=0.0003;THETA=0.0022;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70146181 . G GT 29 PASS INDEL;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6060;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70146291 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9995;RSQ=0.7607;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70146398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0006;AVGPOST=0.9990;RSQ=0.3184;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70146431 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9808;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70146486 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.781;LDAF=0.0022;AVGPOST=0.9983;RSQ=0.6379;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70146598 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0035;AVGPOST=0.9974;RSQ=0.7002;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70146741 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.6428;AVGPOST=0.9949;RSQ=0.9906;ERATE=0.0006;THETA=0.0004;AC=1402;AN=2184 GT:DS:GL:BD 0.64194137 1 1 70146751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0028;AVGPOST=0.9959;RSQ=0.4106;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70146824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0046;AVGPOST=0.9975;RSQ=0.8275;ERATE=0.0004;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70146921 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.559;LDAF=0.0023;AVGPOST=0.9963;RSQ=0.3102;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70146935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0092;AVGPOST=0.9991;RSQ=0.9533;ERATE=0.0004;THETA=0.0010;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70146958 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0464;AVGPOST=0.9992;RSQ=0.9920;ERATE=0.0003;THETA=0.0003;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 70146975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.958;LDAF=0.0912;AVGPOST=0.9889;RSQ=0.9523;ERATE=0.0004;THETA=0.0002;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 70147118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0011;AVGPOST=0.9983;RSQ=0.3690;ERATE=0.0003;THETA=0.0003;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70147141 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0149;AVGPOST=0.9966;RSQ=0.9023;ERATE=0.0008;THETA=0.0003;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70147351 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0232;AVGPOST=0.9992;RSQ=0.9840;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70147423 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.989;LDAF=0.0848;AVGPOST=0.9962;RSQ=0.9831;ERATE=0.0003;THETA=0.0003;AC=187;AN=2184 GT:DS:GL:BD 0.08562271 0 1 70147636 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8330;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70147653 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.608;LDAF=0.0046;AVGPOST=0.9986;RSQ=0.8597;ERATE=0.0003;THETA=0.0017;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70147674 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.931;LDAF=0.5712;AVGPOST=0.9577;RSQ=0.9405;ERATE=0.0077;THETA=0.0002;AC=1271;AN=2184 GT:DS:GL:BD 0.58195972 1 1 70147675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6849;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70147793 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.645;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.8071;ERATE=0.0004;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70147844 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9425;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70147939 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0074;AVGPOST=0.9980;RSQ=0.9024;ERATE=0.0002;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70147945 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.821;LDAF=0.0168;AVGPOST=0.9941;RSQ=0.8525;ERATE=0.0004;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70147962 . C CA 12057 PASS INDEL;BAVGPOST=0.938;BRSQ=0.868;LDAF=0.3098;AVGPOST=0.9381;RSQ=0.8939;ERATE=0.0053;THETA=0.0005;AC=690;AN=2184 GT:DS:GL:BD 0.31593406 0 1 70147977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70148068 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0229;AVGPOST=0.9998;RSQ=0.9963;ERATE=0.0002;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70148258 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.936;LDAF=0.0760;AVGPOST=0.9925;RSQ=0.9602;ERATE=0.0006;THETA=0.0003;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70148541 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.930;BRSQ=0.729;LDAF=0.1420;AVGPOST=0.9449;RSQ=0.8442;ERATE=0.0022;THETA=0.0002;AC=299;AN=2184 GT:DS:GL:BD 0.13690476 0 1 70148576 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.975;LDAF=0.2551;AVGPOST=0.9848;RSQ=0.9686;ERATE=0.0015;THETA=0.0001;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 70148649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.984;LDAF=0.0893;AVGPOST=0.9925;RSQ=0.9657;ERATE=0.0006;THETA=0.0006;AC=191;AN=2184 GT:DS:GL:BD 0.08745421 0 1 70148713 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.959;BRSQ=0.565;LDAF=0.0502;AVGPOST=0.9634;RSQ=0.7326;ERATE=0.0017;THETA=0.0004;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 70148977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0119;AVGPOST=0.9843;RSQ=0.4363;ERATE=0.0036;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70148978 . AG A 2007 PASS INDEL;BAVGPOST=0.773;BRSQ=0.459;LDAF=0.2385;AVGPOST=0.8049;RSQ=0.6137;ERATE=0.0260;THETA=0.0004;AC=471;AN=2184 GT:DS:GL:BD 0.21565934 0 1 70148986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.741;LDAF=0.0070;AVGPOST=0.9964;RSQ=0.7831;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70149135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.979;LDAF=0.2676;AVGPOST=0.9949;RSQ=0.9906;ERATE=0.0009;THETA=0.0002;AC=584;AN=2184 GT:DS:GL:BD 0.26739928 0 1 70149443 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4800;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70149455 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7444;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70149919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.976;LDAF=0.2926;AVGPOST=0.9904;RSQ=0.9818;ERATE=0.0031;THETA=0.0004;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 70150498 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5929;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70150506 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0084;AVGPOST=0.9959;RSQ=0.7919;ERATE=0.0006;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70150536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5083;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70151004 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2908;AVGPOST=0.9949;RSQ=0.9905;ERATE=0.0009;THETA=0.0004;AC=636;AN=2184 GT:DS:GL:BD 0.29120880 0 1 70151111 rs34492568 T TA 492 PASS INDEL;BAVGPOST=0.883;BRSQ=0.198;LDAF=0.1362;AVGPOST=0.8349;RSQ=0.4641;ERATE=0.0125;THETA=0.0005;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 70151668 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0650;AVGPOST=0.9977;RSQ=0.9838;ERATE=0.0004;THETA=0.0001;AC=141;AN=2184 GT:DS:GL:BD 0.06456044 0 1 70151777 rs71132675 T TA 884 PASS INDEL;BAVGPOST=0.894;BRSQ=0.354;LDAF=0.1555;AVGPOST=0.8008;RSQ=0.3715;ERATE=0.0231;THETA=0.0003;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 70151824 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.428;LDAF=0.0044;AVGPOST=0.9938;RSQ=0.5039;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70151852 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0563;AVGPOST=0.9957;RSQ=0.9697;ERATE=0.0006;THETA=0.0004;AC=121;AN=2184 GT:DS:GL:BD 0.05540293 0 1 70151856 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.972;LDAF=0.5918;AVGPOST=0.9660;RSQ=0.9500;ERATE=0.0081;THETA=0.0003;AC=1305;AN=2184 GT:DS:GL:BD 0.59752744 1 1 70151860 . T TAAAG 18782 PASS INDEL;BAVGPOST=0.947;BRSQ=0.905;LDAF=0.5617;AVGPOST=0.9305;RSQ=0.8991;ERATE=0.0101;THETA=0.0003;AC=1256;AN=2184 GT:DS:GL:BD 0.57509160 1 1 70151860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.727;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7226;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70151892 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7202;ERATE=0.0011;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70151897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2882;AVGPOST=0.9980;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 70151934 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70151994 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.813;LDAF=0.0029;AVGPOST=0.9987;RSQ=0.8515;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70151999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7186;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70152000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2891;AVGPOST=0.9991;RSQ=0.9988;ERATE=0.0004;THETA=0.0050;AC=631;AN=2184 GT:DS:GL:BD 0.28891942 0 1 70152044 rs57836720 C CA 39523 PASS INDEL;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2876;AVGPOST=0.9957;RSQ=0.9937;ERATE=0.0011;THETA=0.0007;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 70152081 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0069;AVGPOST=0.9993;RSQ=0.9587;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70152133 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9290;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=2029;AN=2184 GT:DS:GL:BD 0.92902929 1 1 70152181 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.2892;AVGPOST=0.9979;RSQ=0.9968;ERATE=0.0007;THETA=0.0003;AC=632;AN=2184 GT:DS:GL:BD 0.28937730 0 1 70152183 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9988;RSQ=0.8490;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70152225 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70152255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2894;AVGPOST=0.9985;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 70152303 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.663;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5825;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70152426 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2889;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0007;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 70152470 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0028;AVGPOST=0.9987;RSQ=0.7909;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70152528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70152557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9322;AVGPOST=0.9995;RSQ=0.9964;ERATE=0.0004;THETA=0.0004;AC=2036;AN=2184 GT:DS:GL:BD 0.93223441 1 1 70152673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.831;LDAF=0.0088;AVGPOST=0.9975;RSQ=0.8790;ERATE=0.0003;THETA=0.0015;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70152682 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0822;AVGPOST=0.9980;RSQ=0.9914;ERATE=0.0004;THETA=0.0002;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 70152688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6404;AVGPOST=0.9982;RSQ=0.9978;ERATE=0.0003;THETA=0.0005;AC=1399;AN=2184 GT:DS:GL:BD 0.64056778 1 1 70152706 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0021;AVGPOST=0.9991;RSQ=0.8360;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70152712 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4947;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70152722 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8170;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70152727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7206;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70152765 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0053;AVGPOST=0.9995;RSQ=0.9629;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70152774 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1116;AVGPOST=0.9992;RSQ=0.9962;ERATE=0.0003;THETA=0.0003;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 70152781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9632;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70152841 . AT A 392 PASS INDEL;BAVGPOST=0.972;BRSQ=0.524;LDAF=0.0444;AVGPOST=0.9462;RSQ=0.5044;ERATE=0.0104;THETA=0.0004;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 70152875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6450;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0016;AC=1409;AN=2184 GT:DS:GL:BD 0.64514655 1 1 70152876 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70152888 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9292;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=2029;AN=2184 GT:DS:GL:BD 0.92902929 1 1 70152939 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6475;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0005;THETA=0.0002;AC=1415;AN=2184 GT:DS:GL:BD 0.64789379 1 1 70152945 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6444;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0005;THETA=0.0002;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 70153003 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8407;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70153012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70153043 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6442;AVGPOST=0.9984;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 70153089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.922;LDAF=0.0096;AVGPOST=0.9994;RSQ=0.9710;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70153106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.6438;AVGPOST=0.9982;RSQ=0.9972;ERATE=0.0003;THETA=0.0003;AC=1408;AN=2184 GT:DS:GL:BD 0.64468867 1 1 70153114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.954;LDAF=0.0189;AVGPOST=0.9972;RSQ=0.9455;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70153170 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9355;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70153185 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9358;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70153219 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0070;AVGPOST=0.9992;RSQ=0.9467;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70153289 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70153293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70153540 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2819;AVGPOST=0.9988;RSQ=0.9980;ERATE=0.0004;THETA=0.0004;AC=614;AN=2184 GT:DS:GL:BD 0.28113553 0 1 70153563 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2833;AVGPOST=0.9939;RSQ=0.9912;ERATE=0.0008;THETA=0.0007;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 70153585 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2837;AVGPOST=0.9980;RSQ=0.9974;ERATE=0.0004;THETA=0.0022;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 70153640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2829;AVGPOST=0.9981;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 70153711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1116;AVGPOST=0.9990;RSQ=0.9956;ERATE=0.0004;THETA=0.0004;AC=243;AN=2184 GT:DS:GL:BD 0.11126374 0 1 70153734 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2842;AVGPOST=0.9971;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 70153737 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.2789;AVGPOST=0.9959;RSQ=0.9942;ERATE=0.0005;THETA=0.0034;AC=608;AN=2184 GT:DS:GL:BD 0.27838829 0 1 70153762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2819;AVGPOST=0.9996;RSQ=0.9993;ERATE=0.0003;THETA=0.0005;AC=615;AN=2184 GT:DS:GL:BD 0.28159341 0 1 70153899 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9310;AVGPOST=0.9975;RSQ=0.9841;ERATE=0.0006;THETA=0.0004;AC=2035;AN=2184 GT:DS:GL:BD 0.93177658 1 1 70153909 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7455;ERATE=0.0008;THETA=0.0032;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70153976 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1563;AVGPOST=0.9978;RSQ=0.9936;ERATE=0.0004;THETA=0.0003;AC=339;AN=2184 GT:DS:GL:BD 0.15521978 0 1 70153980 rs34355768 C CA 46436 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2824;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 70153999 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9746;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70154027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2829;AVGPOST=0.9998;RSQ=0.9997;ERATE=0.0003;THETA=0.0005;AC=617;AN=2184 GT:DS:GL:BD 0.28250915 0 1 70154111 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=1.0000;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70154114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.742;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6555;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70154215 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70154283 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8767;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70154289 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0069;AVGPOST=0.9961;RSQ=0.7866;ERATE=0.0006;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70154480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7513;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70154481 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2834;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0004;THETA=0.0003;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 70154489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.591;LDAF=0.0027;AVGPOST=0.9988;RSQ=0.7993;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70154604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.982;LDAF=0.2804;AVGPOST=0.9922;RSQ=0.9887;ERATE=0.0007;THETA=0.0003;AC=612;AN=2184 GT:DS:GL:BD 0.28021979 0 1 70154632 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.978;LDAF=0.2800;AVGPOST=0.9944;RSQ=0.9913;ERATE=0.0009;THETA=0.0002;AC=611;AN=2184 GT:DS:GL:BD 0.27976191 0 1 70154633 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0029;AVGPOST=0.9970;RSQ=0.6136;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70154756 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2832;AVGPOST=0.9990;RSQ=0.9986;ERATE=0.0004;THETA=0.0009;AC=618;AN=2184 GT:DS:GL:BD 0.28296703 0 1 70154814 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.2838;AVGPOST=0.9963;RSQ=0.9951;ERATE=0.0004;THETA=0.0007;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 70154825 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70154899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2762;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0004;THETA=0.0005;AC=601;AN=2184 GT:DS:GL:BD 0.27518314 0 1 70154961 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6753;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70155054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.998;LDAF=0.2782;AVGPOST=0.9982;RSQ=0.9975;ERATE=0.0004;THETA=0.0003;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 70155062 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2778;AVGPOST=0.9991;RSQ=0.9985;ERATE=0.0003;THETA=0.0002;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 70155099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9998;RSQ=0.9668;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70155178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70155211 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6065;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70155294 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2872;AVGPOST=0.9991;RSQ=0.9986;ERATE=0.0004;THETA=0.0004;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 70155338 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2875;AVGPOST=0.9984;RSQ=0.9977;ERATE=0.0004;THETA=0.0005;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 70155359 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70155437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9202;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70155485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70155559 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6883;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70155602 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2846;AVGPOST=0.9981;RSQ=0.9974;ERATE=0.0003;THETA=0.0004;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 70155606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0059;AVGPOST=0.9999;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70155631 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2850;AVGPOST=0.9985;RSQ=0.9976;ERATE=0.0003;THETA=0.0003;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 70155641 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.794;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7665;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70155657 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2851;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0004;THETA=0.0007;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 70155680 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8654;ERATE=0.0004;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70155684 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2852;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0004;AC=622;AN=2184 GT:DS:GL:BD 0.28479853 0 1 70155698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.6095;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70155740 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.2883;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0003;THETA=0.0007;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 70155756 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4800;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70155824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2793;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 70155833 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.997;LDAF=0.3818;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0005;THETA=0.0003;AC=834;AN=2184 GT:DS:GL:BD 0.38186812 0 1 70155925 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9238;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70156071 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0064;AVGPOST=0.9990;RSQ=0.9319;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70156126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2794;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0003;AC=609;AN=2184 GT:DS:GL:BD 0.27884614 0 1 70156179 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70156185 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.627;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.6250;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70156189 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.800;LDAF=0.0041;AVGPOST=0.9987;RSQ=0.8677;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70156298 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3985;AVGPOST=0.9980;RSQ=0.9971;ERATE=0.0005;THETA=0.0002;AC=868;AN=2184 GT:DS:GL:BD 0.39743590 0 1 70156324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70156391 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70156450 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70156474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3987;AVGPOST=0.9994;RSQ=0.9991;ERATE=0.0003;THETA=0.0003;AC=869;AN=2184 GT:DS:GL:BD 0.39789379 0 1 70156489 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9865;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70156540 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.3788;AVGPOST=0.9957;RSQ=0.9932;ERATE=0.0029;THETA=0.0002;AC=828;AN=2184 GT:DS:GL:BD 0.37912089 0 1 70156549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3977;AVGPOST=0.9990;RSQ=0.9985;ERATE=0.0004;THETA=0.0002;AC=867;AN=2184 GT:DS:GL:BD 0.39697802 0 1 70156564 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.6926;ERATE=0.0004;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70156627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0057;AVGPOST=0.9995;RSQ=0.9620;ERATE=0.0004;THETA=0.0001;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70156650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70156779 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.782;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7636;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70156858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0025;AVGPOST=0.9986;RSQ=0.7897;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70156911 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.997;LDAF=0.3918;AVGPOST=0.9977;RSQ=0.9965;ERATE=0.0006;THETA=0.0003;AC=854;AN=2184 GT:DS:GL:BD 0.39102563 0 1 70156921 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0045;AVGPOST=0.9985;RSQ=0.8809;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70156999 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70157033 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0155;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70157077 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8667;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70157080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7425;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70157158 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70157263 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.554;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.6027;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70157285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70157304 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9995;RSQ=0.9830;ERATE=0.0003;THETA=0.0012;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70157315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0178;AVGPOST=0.9997;RSQ=0.9913;ERATE=0.0003;THETA=0.0009;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70157497 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5602;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70157588 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5765;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70157675 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0030;AVGPOST=0.9986;RSQ=0.8212;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70157727 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9571;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70157750 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0059;AVGPOST=0.9984;RSQ=0.8941;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70157781 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70157782 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70157799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7129;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70157942 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5401;AVGPOST=0.9989;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=1180;AN=2184 GT:DS:GL:BD 0.54029304 1 1 70157981 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.2622;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70158006 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70158120 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70158166 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70158167 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70158195 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70158196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0178;AVGPOST=0.9999;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70158222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70158289 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70158297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70158568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9302;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70158670 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70158785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6265;AVGPOST=0.9972;RSQ=0.9950;ERATE=0.0008;THETA=0.0003;AC=1369;AN=2184 GT:DS:GL:BD 0.62683153 1 1 70158876 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6265;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70158919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5133;AVGPOST=0.9968;RSQ=0.9955;ERATE=0.0004;THETA=0.0003;AC=1123;AN=2184 GT:DS:GL:BD 0.51419413 1 1 70158937 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70159024 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70159046 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0085;AVGPOST=0.9974;RSQ=0.8985;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70159192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70159226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9226;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70159234 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9800;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70159266 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70159329 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70159422 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0072;AVGPOST=0.9994;RSQ=0.9648;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70159487 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70159624 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0425;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0029;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70159632 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70159652 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0178;AVGPOST=1.0000;RSQ=0.9987;ERATE=0.0003;THETA=0.0006;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70159774 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6205;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=1355;AN=2184 GT:DS:GL:BD 0.62042123 1 1 70159877 . GTAT G 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70159998 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4253;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70160467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70160513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7193;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160558 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7148;ERATE=0.0006;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70160578 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9787;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70160582 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0131;AVGPOST=0.9985;RSQ=0.9569;ERATE=0.0003;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70160619 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6803;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70160681 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.942;LDAF=0.5019;AVGPOST=0.9527;RSQ=0.9314;ERATE=0.0139;THETA=0.0009;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 70160727 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4728;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160801 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160957 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160981 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7096;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70160996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0093;AVGPOST=0.9995;RSQ=0.9748;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70161122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0090;AVGPOST=0.9991;RSQ=0.9530;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70161145 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.942;LDAF=0.0698;AVGPOST=0.9912;RSQ=0.9493;ERATE=0.0006;THETA=0.0004;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 70161174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9980;RSQ=0.8833;ERATE=0.0006;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70161402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.657;LDAF=0.0048;AVGPOST=0.9951;RSQ=0.5912;ERATE=0.0008;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70161441 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0731;AVGPOST=0.9988;RSQ=0.9929;ERATE=0.0003;THETA=0.0004;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 70161521 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5579;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70161624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0734;AVGPOST=0.9986;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 70161929 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9705;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70162049 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0154;AVGPOST=0.9986;RSQ=0.9699;ERATE=0.0003;THETA=0.0029;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70162055 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6904;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70162090 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0042;AVGPOST=0.9994;RSQ=0.9338;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70162189 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.6964;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70162285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.885;LDAF=0.0230;AVGPOST=0.9941;RSQ=0.8964;ERATE=0.0004;THETA=0.0010;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70162370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7257;ERATE=0.0008;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70162374 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8595;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70162407 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70162454 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6745;ERATE=0.0004;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70162480 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8354;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70162507 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.4033;AVGPOST=0.9938;RSQ=0.9896;ERATE=0.0005;THETA=0.0003;AC=878;AN=2184 GT:DS:GL:BD 0.40201464 0 1 70162542 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9571;ERATE=0.0003;THETA=0.0082;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70162645 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0174;AVGPOST=0.9996;RSQ=0.9899;ERATE=0.0003;THETA=0.0028;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70162789 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9997;RSQ=0.9832;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70162892 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.971;LDAF=0.9385;AVGPOST=0.9962;RSQ=0.9771;ERATE=0.0004;THETA=0.0007;AC=2049;AN=2184 GT:DS:GL:BD 0.93818682 1 1 70162932 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.935;LDAF=0.9887;AVGPOST=0.9975;RSQ=0.9078;ERATE=0.0003;THETA=0.0047;AC=2161;AN=2184 GT:DS:GL:BD 0.98946887 1 1 70162947 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9910;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70163041 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7386;ERATE=0.0006;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70163127 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.0948;AVGPOST=0.9952;RSQ=0.9775;ERATE=0.0005;THETA=0.0005;AC=205;AN=2184 GT:DS:GL:BD 0.09386447 0 1 70163220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0228;AVGPOST=0.9989;RSQ=0.9838;ERATE=0.0003;THETA=0.0022;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70163226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.0679;ERATE=0.0003;THETA=0.0012;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70163227 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70163273 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7863;ERATE=0.0003;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70163296 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0863;AVGPOST=0.9964;RSQ=0.9844;ERATE=0.0006;THETA=0.0006;AC=186;AN=2184 GT:DS:GL:BD 0.08516484 0 1 70163409 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.2943;AVGPOST=0.9945;RSQ=0.9908;ERATE=0.0004;THETA=0.0006;AC=644;AN=2184 GT:DS:GL:BD 0.29487181 0 1 70163659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7822;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70163800 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70163936 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0004;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70163943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.979;LDAF=0.0885;AVGPOST=0.9959;RSQ=0.9825;ERATE=0.0005;THETA=0.0007;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 70163951 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0082;AVGPOST=0.9981;RSQ=0.9085;ERATE=0.0003;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70163957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0078;AVGPOST=0.9986;RSQ=0.9262;ERATE=0.0003;THETA=0.0010;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70164192 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.823;LDAF=0.0036;AVGPOST=0.9970;RSQ=0.6643;ERATE=0.0013;THETA=0.0044;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70164222 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0295;AVGPOST=0.9966;RSQ=0.9533;ERATE=0.0007;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 70164493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0451;AVGPOST=0.9941;RSQ=0.9500;ERATE=0.0006;THETA=0.0018;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 70164545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.964;LDAF=0.5186;AVGPOST=0.9596;RSQ=0.9414;ERATE=0.0016;THETA=0.0094;AC=1134;AN=2184 GT:DS:GL:BD 0.51923078 1 1 70164581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.560;LDAF=0.0041;AVGPOST=0.9952;RSQ=0.5260;ERATE=0.0008;THETA=0.0026;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70164754 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.948;LDAF=0.2793;AVGPOST=0.9629;RSQ=0.9333;ERATE=0.0012;THETA=0.0031;AC=605;AN=2184 GT:DS:GL:BD 0.27701464 0 1 70164766 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0034;AVGPOST=0.9977;RSQ=0.7429;ERATE=0.0003;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70164865 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5304;ERATE=0.0008;THETA=0.0077;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70164882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0104;AVGPOST=0.9992;RSQ=0.9644;ERATE=0.0004;THETA=0.0069;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70164924 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.733;LDAF=0.0031;AVGPOST=0.9987;RSQ=0.8333;ERATE=0.0003;THETA=0.0072;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70164977 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8467;ERATE=0.0003;THETA=0.0072;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70165065 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70165080 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9302;ERATE=0.0004;THETA=0.0048;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70165081 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7675;ERATE=0.0005;THETA=0.0045;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70165112 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.884;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9574;ERATE=0.0003;THETA=0.0024;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70165196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.813;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0059;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70165226 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0039;AVGPOST=0.9984;RSQ=0.8271;ERATE=0.0004;THETA=0.0031;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70165261 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0037;AVGPOST=0.9974;RSQ=0.7080;ERATE=0.0007;THETA=0.0075;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70165296 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.748;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0003;THETA=0.0087;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70165328 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6777;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70165370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9020;ERATE=0.0005;THETA=0.0015;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70165400 rs5780163 CA C 26370 PASS INDEL;BAVGPOST=0.969;BRSQ=0.940;LDAF=0.3159;AVGPOST=0.9598;RSQ=0.9335;ERATE=0.0049;THETA=0.0111;AC=682;AN=2184 GT:DS:GL:BD 0.31227106 0 1 70165481 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7494;ERATE=0.0003;THETA=0.0210;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70165507 . CTCCT C 885 PASS INDEL;BAVGPOST=0.997;BRSQ=0.775;LDAF=0.0067;AVGPOST=0.9949;RSQ=0.6946;ERATE=0.0008;THETA=0.0439;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70165508 . T TTC 8050 PASS INDEL;BAVGPOST=0.854;BRSQ=0.676;LDAF=0.3189;AVGPOST=0.8566;RSQ=0.7275;ERATE=0.0014;THETA=0.0129;AC=680;AN=2184 GT:DS:GL:BD 0.31135532 0 1 70165554 rs71842683 CCTTT C 9859 PASS INDEL;BAVGPOST=0.863;BRSQ=0.773;LDAF=0.3508;AVGPOST=0.8661;RSQ=0.8087;ERATE=0.0012;THETA=0.0033;AC=765;AN=2184 GT:DS:GL:BD 0.35027471 0 1 70165577 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.869;BRSQ=0.789;LDAF=0.4130;AVGPOST=0.8686;RSQ=0.8209;ERATE=0.0082;THETA=0.0122;AC=903;AN=2184 GT:DS:GL:BD 0.41346154 0 1 70165581 . CTT C 681 PASS INDEL;BAVGPOST=0.809;BRSQ=0.546;LDAF=0.1939;AVGPOST=0.8447;RSQ=0.6571;ERATE=0.0009;THETA=0.0035;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 70165590 rs72332802 TTTC T 12317 PASS INDEL;BAVGPOST=0.854;BRSQ=0.756;LDAF=0.3323;AVGPOST=0.8598;RSQ=0.7975;ERATE=0.0022;THETA=0.0086;AC=716;AN=2184 GT:DS:GL:BD 0.32783884 0 1 70165591 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.823;BRSQ=0.560;LDAF=0.2210;AVGPOST=0.8491;RSQ=0.6498;ERATE=0.0133;THETA=0.0185;AC=414;AN=2184 GT:DS:GL:BD 0.18956044 0 1 70165608 . TCC T 5040 PASS INDEL;BAVGPOST=0.822;BRSQ=0.584;LDAF=0.7193;AVGPOST=0.7835;RSQ=0.5670;ERATE=0.0147;THETA=0.0112;AC=1650;AN=2184 GT:DS:GL:BD 0.75549453 1 1 70165639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.871;BRSQ=0.577;LDAF=0.1746;AVGPOST=0.8729;RSQ=0.6241;ERATE=0.0040;THETA=0.0199;AC=300;AN=2184 GT:DS:GL:BD 0.13736264 0 1 70165640 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.884;BRSQ=0.790;LDAF=0.5136;AVGPOST=0.8559;RSQ=0.7763;ERATE=0.0127;THETA=0.0274;AC=1106;AN=2184 GT:DS:GL:BD 0.50641024 1 1 70165659 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.7045;ERATE=0.0005;THETA=0.0252;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70165688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8070;ERATE=0.0006;THETA=0.0243;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70165724 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0234;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70165730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.798;LDAF=0.0036;AVGPOST=0.9982;RSQ=0.7836;ERATE=0.0005;THETA=0.0163;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70165776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7450;ERATE=0.0005;THETA=0.0221;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70165826 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.936;LDAF=0.0474;AVGPOST=0.9951;RSQ=0.9575;ERATE=0.0020;THETA=0.0155;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 70165854 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7437;ERATE=0.0003;THETA=0.0180;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70165873 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.712;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8592;ERATE=0.0004;THETA=0.0167;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70165931 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6557;ERATE=0.0003;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70165942 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.826;LDAF=0.1246;AVGPOST=0.9612;RSQ=0.8574;ERATE=0.0101;THETA=0.0251;AC=247;AN=2184 GT:DS:GL:BD 0.11309524 0 1 70165967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.753;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.7778;ERATE=0.0004;THETA=0.0236;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70166076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0183;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70166139 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.935;LDAF=0.0753;AVGPOST=0.9863;RSQ=0.9358;ERATE=0.0052;THETA=0.0237;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70166156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.829;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8054;ERATE=0.0004;THETA=0.0122;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70166157 rs36073485 C CT 132 PASS INDEL;BAVGPOST=0.998;BRSQ=0.710;LDAF=0.0038;AVGPOST=0.9969;RSQ=0.6305;ERATE=0.0006;THETA=0.0202;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70166262 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8453;ERATE=0.0003;THETA=0.0162;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70166293 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5058;ERATE=0.0004;THETA=0.0197;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70166443 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8890;ERATE=0.0003;THETA=0.0342;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70166444 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0082;AVGPOST=0.9991;RSQ=0.9559;ERATE=0.0008;THETA=0.0269;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70166484 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0144;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70166510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.880;LDAF=0.0041;AVGPOST=0.9990;RSQ=0.9065;ERATE=0.0006;THETA=0.0090;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70166629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7311;ERATE=0.0006;THETA=0.0203;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70166654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8552;ERATE=0.0005;THETA=0.0130;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70166720 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0146;AVGPOST=0.9992;RSQ=0.9772;ERATE=0.0003;THETA=0.0203;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70166860 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7921;ERATE=0.0003;THETA=0.0254;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70166961 . CA C 575 PASS INDEL;BAVGPOST=0.996;BRSQ=0.689;LDAF=0.0068;AVGPOST=0.9963;RSQ=0.7728;ERATE=0.0006;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70167066 rs112625310 GTTGT G 12140 PASS INDEL;BAVGPOST=0.988;BRSQ=0.961;LDAF=0.1454;AVGPOST=0.9943;RSQ=0.9822;ERATE=0.0008;THETA=0.0035;AC=320;AN=2184 GT:DS:GL:BD 0.14652015 0 1 70167085 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3228;AVGPOST=0.9944;RSQ=0.9909;ERATE=0.0006;THETA=0.0037;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 70167330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.3277;AVGPOST=0.9934;RSQ=0.9897;ERATE=0.0010;THETA=0.0015;AC=719;AN=2184 GT:DS:GL:BD 0.32921246 0 1 70167362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0024;AVGPOST=0.9981;RSQ=0.7159;ERATE=0.0006;THETA=0.0030;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70167371 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70167434 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7198;ERATE=0.0003;THETA=0.0017;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70167451 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0602;AVGPOST=0.9985;RSQ=0.9878;ERATE=0.0004;THETA=0.0006;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 70167453 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8648;ERATE=0.0004;THETA=0.0093;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70167571 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9026;ERATE=0.0004;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70167655 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1712;AVGPOST=0.9991;RSQ=0.9980;ERATE=0.0013;THETA=0.0004;AC=375;AN=2184 GT:DS:GL:BD 0.17170329 0 1 70167946 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9612;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70168033 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1709;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0038;THETA=0.0005;AC=374;AN=2184 GT:DS:GL:BD 0.17124543 0 1 70168079 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70168140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9756;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70168149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9960;ERATE=0.0003;THETA=0.0070;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70168182 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0966;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0013;THETA=0.0007;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 70168355 . AAGGAG A 142 PASS INDEL;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8193;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70168474 . AGGAGAG A 472 PASS INDEL;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8423;ERATE=0.0003;THETA=0.0048;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70168475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70168514 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0022;AVGPOST=0.9999;RSQ=0.9816;ERATE=0.0003;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70168610 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168635 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168672 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0013;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70168688 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70168693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168793 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70168986 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9957;ERATE=0.0003;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70168997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0002;AVGPOST=0.9996;RSQ=0.3608;ERATE=0.0003;THETA=0.0019;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70169089 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70169100 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0050;AVGPOST=0.9996;RSQ=0.9649;ERATE=0.0003;THETA=0.0036;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70169134 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5571;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169191 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0060;AVGPOST=0.9997;RSQ=0.9813;ERATE=0.0003;THETA=0.0028;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70169192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70169319 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.625;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169343 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0035;AVGPOST=0.9994;RSQ=0.9440;ERATE=0.0003;THETA=0.0032;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70169362 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0400;AVGPOST=0.9995;RSQ=0.9946;ERATE=0.0004;THETA=0.0023;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 70169463 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169497 . G GC 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5186;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169611 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169631 rs61757998 GTCC G 157 PASS INDEL;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0042;AVGPOST=0.9980;RSQ=0.8174;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70169663 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70169682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0110;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0022;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70169684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0521;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0003;THETA=0.0030;AC=114;AN=2184 GT:DS:GL:BD 0.05219780 0 1 70169796 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9667;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70170034 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170060 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0081;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70170175 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0535;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0003;THETA=0.0005;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 70170194 . GCTC G 374 PASS INDEL;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8395;ERATE=0.0004;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70170208 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170210 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170347 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70170386 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0639;AVGPOST=0.9996;RSQ=0.9977;ERATE=0.0003;THETA=0.0030;AC=139;AN=2184 GT:DS:GL:BD 0.06364469 0 1 70170446 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1901;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0004;AC=416;AN=2184 GT:DS:GL:BD 0.19047619 0 1 70170607 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.965;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70170637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9905;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70170718 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70170726 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0012;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70170779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0017;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70170783 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3803;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0005;AC=832;AN=2184 GT:DS:GL:BD 0.38095239 0 1 70170955 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9702;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70171088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70171119 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3787;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=829;AN=2184 GT:DS:GL:BD 0.37957877 0 1 70171152 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70171155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70171230 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70171255 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0003;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70171314 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70171388 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70171463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5994;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70171606 rs34286359 G GA 28145 PASS INDEL;BAVGPOST=0.984;BRSQ=0.964;LDAF=0.1896;AVGPOST=0.9954;RSQ=0.9902;ERATE=0.0004;THETA=0.0007;AC=417;AN=2184 GT:DS:GL:BD 0.19093406 0 1 70171629 . A AC 5377 PASS INDEL;BAVGPOST=0.974;BRSQ=0.921;LDAF=0.1647;AVGPOST=0.9745;RSQ=0.9434;ERATE=0.0005;THETA=0.0006;AC=369;AN=2184 GT:DS:GL:BD 0.16895604 0 1 70171630 . A AC 4271 PASS INDEL;BAVGPOST=0.974;BRSQ=0.921;LDAF=0.1642;AVGPOST=0.9734;RSQ=0.9405;ERATE=0.0008;THETA=0.0004;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 70171633 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.969;LDAF=0.1285;AVGPOST=0.9901;RSQ=0.9649;ERATE=0.0006;THETA=0.0011;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 70171659 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0061;AVGPOST=0.9995;RSQ=0.9730;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70171910 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70171977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0019;AVGPOST=0.9996;RSQ=0.9184;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70172053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8560;ERATE=0.0003;THETA=0.0090;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70172174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0155;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70172176 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0004;THETA=0.0169;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70172356 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.733;LDAF=0.0087;AVGPOST=0.9932;RSQ=0.7227;ERATE=0.0004;THETA=0.0189;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70172404 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.734;LDAF=0.9024;AVGPOST=0.9379;RSQ=0.7539;ERATE=0.0123;THETA=0.0218;AC=2009;AN=2184 GT:DS:GL:BD 0.91987181 1 1 70172408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.606;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8019;ERATE=0.0003;THETA=0.0383;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70172436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.925;LDAF=0.0079;AVGPOST=0.9987;RSQ=0.9311;ERATE=0.0003;THETA=0.0067;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70172549 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.930;LDAF=0.0098;AVGPOST=0.9984;RSQ=0.9330;ERATE=0.0003;THETA=0.0199;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70172561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9336;ERATE=0.0006;THETA=0.0160;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70172646 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.891;LDAF=0.8098;AVGPOST=0.9581;RSQ=0.9038;ERATE=0.0254;THETA=0.0207;AC=1785;AN=2184 GT:DS:GL:BD 0.81730771 1 1 70172675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0103;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70172681 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7515;ERATE=0.0003;THETA=0.0340;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70172746 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0121;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70172753 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5347;ERATE=0.0003;THETA=0.0150;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70172993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.933;BRSQ=0.892;LDAF=0.4505;AVGPOST=0.9251;RSQ=0.8992;ERATE=0.0067;THETA=0.0135;AC=980;AN=2184 GT:DS:GL:BD 0.44871795 0 1 70173053 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.945;LDAF=0.0533;AVGPOST=0.9856;RSQ=0.8949;ERATE=0.0015;THETA=0.0114;AC=108;AN=2184 GT:DS:GL:BD 0.04945055 0 1 70173074 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4549;ERATE=0.0003;THETA=0.0158;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70173113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.4400;ERATE=0.0005;THETA=0.0111;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70173146 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.922;LDAF=0.0220;AVGPOST=0.9950;RSQ=0.9194;ERATE=0.0004;THETA=0.0122;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70173224 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7340;ERATE=0.0003;THETA=0.0032;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70173265 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.802;LDAF=0.0042;AVGPOST=0.9975;RSQ=0.7659;ERATE=0.0003;THETA=0.0061;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70173528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0438;AVGPOST=0.9982;RSQ=0.9818;ERATE=0.0005;THETA=0.0024;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 70173542 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0049;AVGPOST=0.9993;RSQ=0.9378;ERATE=0.0003;THETA=0.0071;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70173603 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7896;ERATE=0.0005;THETA=0.0051;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70173634 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0364;AVGPOST=0.9985;RSQ=0.9803;ERATE=0.0005;THETA=0.0061;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70173636 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.977;LDAF=0.8273;AVGPOST=0.9888;RSQ=0.9729;ERATE=0.0004;THETA=0.0014;AC=1808;AN=2184 GT:DS:GL:BD 0.82783884 1 1 70173658 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.857;LDAF=0.0045;AVGPOST=0.9991;RSQ=0.9091;ERATE=0.0003;THETA=0.0027;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70173671 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0028;AVGPOST=0.9982;RSQ=0.7494;ERATE=0.0003;THETA=0.0063;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70173876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0264;AVGPOST=0.9985;RSQ=0.9746;ERATE=0.0003;THETA=0.0029;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70173952 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.5649;ERATE=0.0003;THETA=0.0054;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70174032 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6715;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70174219 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4765;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70174286 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6572;AVGPOST=0.9926;RSQ=0.9881;ERATE=0.0010;THETA=0.0007;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 70174387 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4084;AVGPOST=0.9959;RSQ=0.9935;ERATE=0.0006;THETA=0.0003;AC=890;AN=2184 GT:DS:GL:BD 0.40750915 0 1 70174414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.834;LDAF=0.0193;AVGPOST=0.9930;RSQ=0.8521;ERATE=0.0007;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70174440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.937;LDAF=0.0130;AVGPOST=0.9974;RSQ=0.9255;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70174459 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.6919;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70174554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4069;AVGPOST=0.9961;RSQ=0.9936;ERATE=0.0005;THETA=0.0007;AC=889;AN=2184 GT:DS:GL:BD 0.40705130 0 1 70174626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.992;LDAF=0.1961;AVGPOST=0.9952;RSQ=0.9881;ERATE=0.0006;THETA=0.0003;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70174643 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6544;AVGPOST=0.9976;RSQ=0.9962;ERATE=0.0006;THETA=0.0004;AC=1428;AN=2184 GT:DS:GL:BD 0.65384614 1 1 70174699 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.8001;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70174710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6543;AVGPOST=0.9981;RSQ=0.9971;ERATE=0.0003;THETA=0.0037;AC=1428;AN=2184 GT:DS:GL:BD 0.65384614 1 1 70174727 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0022;AVGPOST=0.9993;RSQ=0.8659;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70174869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70174887 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6913;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70175157 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1679;AVGPOST=0.9990;RSQ=0.9975;ERATE=0.0003;THETA=0.0012;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 70175231 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6843;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70175259 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0119;AVGPOST=0.9991;RSQ=0.9677;ERATE=0.0005;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70175293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.974;LDAF=0.1580;AVGPOST=0.9964;RSQ=0.9897;ERATE=0.0007;THETA=0.0007;AC=345;AN=2184 GT:DS:GL:BD 0.15796703 0 1 70175336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.3871;AVGPOST=0.9965;RSQ=0.9939;ERATE=0.0005;THETA=0.0005;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 70175339 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.8438;AVGPOST=0.9952;RSQ=0.9872;ERATE=0.0005;THETA=0.0001;AC=1845;AN=2184 GT:DS:GL:BD 0.84478021 1 1 70175397 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7589;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70175437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70175541 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9987;RSQ=0.8849;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70175544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8046;ERATE=0.0004;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70175924 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0094;AVGPOST=0.9989;RSQ=0.9582;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70175964 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9991;RSQ=0.9235;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70176000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1672;AVGPOST=0.9993;RSQ=0.9980;ERATE=0.0004;THETA=0.0002;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 70176078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1688;AVGPOST=0.9975;RSQ=0.9929;ERATE=0.0006;THETA=0.0008;AC=368;AN=2184 GT:DS:GL:BD 0.16849817 0 1 70176172 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.692;LDAF=0.0023;AVGPOST=0.9974;RSQ=0.5262;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70176206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9985;RSQ=0.8943;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70176436 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0269;AVGPOST=0.9991;RSQ=0.9869;ERATE=0.0003;THETA=0.0002;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70176614 . TG T 1472 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9809;ERATE=0.0003;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70176627 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0046;AVGPOST=0.9999;RSQ=0.9921;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70176669 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0007;AVGPOST=0.9992;RSQ=0.4977;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70176725 rs34705401 A AT 525 PASS INDEL;BAVGPOST=0.981;BRSQ=0.623;LDAF=0.0461;AVGPOST=0.9525;RSQ=0.5690;ERATE=0.0073;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70176845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.537;LDAF=0.0022;AVGPOST=0.9964;RSQ=0.3639;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70176873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.870;LDAF=0.0072;AVGPOST=0.9959;RSQ=0.7531;ERATE=0.0008;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70176901 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7182;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70176932 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.772;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4042;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70176935 rs56408372 AT A 6362 PASS INDEL;BAVGPOST=0.967;BRSQ=0.902;LDAF=0.1954;AVGPOST=0.9351;RSQ=0.8501;ERATE=0.0088;THETA=0.0004;AC=396;AN=2184 GT:DS:GL:BD 0.18131869 0 1 70177142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9547;ERATE=0.0005;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70177365 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9660;ERATE=0.0004;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70177484 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8255;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70177596 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8558;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70177642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.7188;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70177695 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 70177698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7324;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70178022 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70178050 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0069;AVGPOST=0.9990;RSQ=0.9406;ERATE=0.0012;THETA=0.0008;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70178168 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4467;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70178231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70178581 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.901;LDAF=0.0061;AVGPOST=0.9986;RSQ=0.9170;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70178731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70178824 rs67023838 AC A 25326 PASS INDEL;BAVGPOST=0.990;BRSQ=0.979;LDAF=0.2443;AVGPOST=0.9961;RSQ=0.9925;ERATE=0.0003;THETA=0.0002;AC=533;AN=2184 GT:DS:GL:BD 0.24404761 0 1 70178853 . TCTTGACTC T 281 PASS INDEL;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7835;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70178899 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0018;AVGPOST=0.9989;RSQ=0.6996;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70178989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2293;AVGPOST=0.9945;RSQ=0.9890;ERATE=0.0007;THETA=0.0003;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 70179018 . AC A 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0041;AVGPOST=0.9965;RSQ=0.6865;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70179122 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70179127 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5272;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70179161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.746;LDAF=0.0486;AVGPOST=0.9658;RSQ=0.7140;ERATE=0.0026;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70179292 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.737;LDAF=0.2255;AVGPOST=0.8835;RSQ=0.7572;ERATE=0.0156;THETA=0.0002;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 70179294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9655;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70179477 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5861;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70179588 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7651;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70179649 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7290;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70179689 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0231;AVGPOST=0.9994;RSQ=0.9901;ERATE=0.0003;THETA=0.0003;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70179735 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70179767 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0027;AVGPOST=0.9995;RSQ=0.9210;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70179768 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70179774 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0089;AVGPOST=0.9996;RSQ=0.9783;ERATE=0.0003;THETA=0.0009;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70179972 . GT G 4853 PASS INDEL;BAVGPOST=0.963;BRSQ=0.908;LDAF=0.2185;AVGPOST=0.9694;RSQ=0.9405;ERATE=0.0009;THETA=0.0005;AC=485;AN=2184 GT:DS:GL:BD 0.22206959 0 1 70179999 rs79696475 TG T 30062 PASS INDEL;BAVGPOST=0.986;BRSQ=0.968;LDAF=0.2399;AVGPOST=0.9894;RSQ=0.9813;ERATE=0.0006;THETA=0.0006;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 70180000 . GC G 5918 PASS INDEL;BAVGPOST=0.967;BRSQ=0.924;LDAF=0.2280;AVGPOST=0.9755;RSQ=0.9555;ERATE=0.0009;THETA=0.0002;AC=502;AN=2184 GT:DS:GL:BD 0.22985348 0 1 70180002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6992;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70180029 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6006;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70180122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0019;AVGPOST=0.9979;RSQ=0.5858;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70180266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70180405 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7141;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70180434 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9640;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70180503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2153;AVGPOST=0.9959;RSQ=0.9901;ERATE=0.0009;THETA=0.0003;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 70180648 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70180676 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8281;ERATE=0.0005;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70180737 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.972;LDAF=0.0644;AVGPOST=0.9943;RSQ=0.9642;ERATE=0.0008;THETA=0.0006;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70180832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0167;AVGPOST=0.9984;RSQ=0.9709;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70180865 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9994;RSQ=0.5321;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70180957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.693;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70180958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.865;LDAF=0.0033;AVGPOST=0.9987;RSQ=0.8479;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70180959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8154;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70181148 rs10558131 ACT A 6071 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0293;AVGPOST=0.9982;RSQ=0.9772;ERATE=0.0005;THETA=0.0004;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 70181191 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9992;RSQ=0.9609;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70181216 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9122;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70181255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2180;AVGPOST=0.9963;RSQ=0.9915;ERATE=0.0007;THETA=0.0005;AC=475;AN=2184 GT:DS:GL:BD 0.21749084 0 1 70181448 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8208;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70181449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181533 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8891;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70181557 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6817;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8665;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70181646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0388;AVGPOST=0.9993;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 70181647 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0069;AVGPOST=0.9999;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70181840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8036;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181886 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5857;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181918 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7303;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70181993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.791;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8865;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70182233 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0105;AVGPOST=0.9995;RSQ=0.9777;ERATE=0.0003;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70182271 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.594;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.7312;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70182316 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5611;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70182437 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70182550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.7197;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70182557 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70182669 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0221;AVGPOST=0.9996;RSQ=0.9923;ERATE=0.0003;THETA=0.0002;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70182671 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0070;AVGPOST=0.9990;RSQ=0.9433;ERATE=0.0003;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70182807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0003;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70182899 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.6644;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70182927 rs41317961 CTT C 819 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9003;ERATE=0.0004;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70183029 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70183085 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.800;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8686;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70183118 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.4674;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70183152 . T TC 7 PASS INDEL;BAVGPOST=0.999;BRSQ=0.733;LDAF=0.0044;AVGPOST=0.9973;RSQ=0.7431;ERATE=0.0004;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70183249 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.822;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70183340 . C CA 112 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70183473 rs77418251 ATT A 30555 PASS INDEL;BAVGPOST=0.987;BRSQ=0.981;LDAF=0.3079;AVGPOST=0.9679;RSQ=0.9457;ERATE=0.0043;THETA=0.0011;AC=667;AN=2184 GT:DS:GL:BD 0.30540293 0 1 70183702 . G GA 1886 PASS INDEL;BAVGPOST=0.956;BRSQ=0.669;LDAF=0.0985;AVGPOST=0.9116;RSQ=0.6068;ERATE=0.0215;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70183708 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7412;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70183718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.9946;AVGPOST=0.9988;RSQ=0.8989;ERATE=0.0003;THETA=0.0003;AC=2173;AN=2184 GT:DS:GL:BD 0.99496335 1 1 70183760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6733;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70183894 . TCAC T 32 PASS INDEL;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0038;AVGPOST=0.9966;RSQ=0.6693;ERATE=0.0020;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70183899 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0064;AVGPOST=0.9996;RSQ=0.9734;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70183957 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7783;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70184074 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0273;AVGPOST=0.9993;RSQ=0.9889;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70184116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0057;AVGPOST=0.9977;RSQ=0.8555;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70184149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0230;AVGPOST=0.9983;RSQ=0.9675;ERATE=0.0004;THETA=0.0004;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70184150 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.5154;AVGPOST=0.9878;RSQ=0.9804;ERATE=0.0030;THETA=0.0004;AC=1123;AN=2184 GT:DS:GL:BD 0.51419413 1 1 70184245 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8064;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70184373 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.909;LDAF=0.0392;AVGPOST=0.9829;RSQ=0.8338;ERATE=0.0022;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70184385 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.660;LDAF=0.0135;AVGPOST=0.9925;RSQ=0.7722;ERATE=0.0006;THETA=0.0006;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70184446 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.907;BRSQ=0.818;LDAF=0.4935;AVGPOST=0.8598;RSQ=0.7670;ERATE=0.0388;THETA=0.0013;AC=1088;AN=2184 GT:DS:GL:BD 0.49816850 0 1 70184479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.944;LDAF=0.0375;AVGPOST=0.9936;RSQ=0.9398;ERATE=0.0005;THETA=0.0004;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70184560 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.887;LDAF=0.0524;AVGPOST=0.9858;RSQ=0.8985;ERATE=0.0009;THETA=0.0048;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 70184562 rs35223061 G GT 5984 PASS INDEL;BAVGPOST=0.834;BRSQ=0.632;LDAF=0.3659;AVGPOST=0.7553;RSQ=0.5615;ERATE=0.0496;THETA=0.0002;AC=708;AN=2184 GT:DS:GL:BD 0.32417583 0 1 70184587 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.670;LDAF=0.0006;AVGPOST=0.9993;RSQ=0.5049;ERATE=0.0003;THETA=0.0058;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70184592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.792;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3965;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70184699 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.837;LDAF=0.0052;AVGPOST=0.9977;RSQ=0.8107;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70184715 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6191;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70184894 . G GA 456 PASS INDEL;BAVGPOST=0.997;BRSQ=0.819;LDAF=0.0095;AVGPOST=0.9945;RSQ=0.7655;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70184961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3028;AVGPOST=0.9979;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=662;AN=2184 GT:DS:GL:BD 0.30311355 0 1 70184981 . AT A 62 PASS INDEL;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4807;ERATE=0.0006;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70184990 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0060;AVGPOST=0.9999;RSQ=0.9916;ERATE=0.0003;THETA=0.0020;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70185217 rs67188187 T TA 79 PASS INDEL;BAVGPOST=0.992;BRSQ=0.412;LDAF=0.0146;AVGPOST=0.9797;RSQ=0.4607;ERATE=0.0030;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70185428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8771;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70185669 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6355;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70185814 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70185884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.6098;ERATE=0.0004;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70185905 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0267;AVGPOST=0.9994;RSQ=0.9889;ERATE=0.0004;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70185915 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2609;AVGPOST=0.9953;RSQ=0.9911;ERATE=0.0007;THETA=0.0002;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 70185977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6227;ERATE=0.0005;THETA=0.0028;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70186017 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5441;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70186074 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6454;ERATE=0.0007;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70186364 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0794;AVGPOST=0.9980;RSQ=0.9894;ERATE=0.0003;THETA=0.0005;AC=172;AN=2184 GT:DS:GL:BD 0.07875458 0 1 70186516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0015;AVGPOST=0.9994;RSQ=0.8421;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70186544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9517;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70186587 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0073;AVGPOST=1.0000;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70186663 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70186682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70186772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9975;ERATE=0.0003;THETA=0.0006;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70186868 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9751;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70186956 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70186988 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70187062 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0050;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70187351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70187416 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0042;AVGPOST=0.9984;RSQ=0.8515;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70187617 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70187649 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0092;AVGPOST=0.9965;RSQ=0.8377;ERATE=0.0006;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70187721 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9986;RSQ=0.9261;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70187748 . GA G 35 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.5616;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70187781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9429;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70187825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.582;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6492;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70187891 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.867;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8850;ERATE=0.0005;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70187892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7473;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70187963 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0121;AVGPOST=0.9992;RSQ=0.9751;ERATE=0.0006;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70188026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7576;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70188096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70188102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0354;AVGPOST=0.9994;RSQ=0.9926;ERATE=0.0003;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70188112 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9524;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188389 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70188426 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70188454 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0914;AVGPOST=0.9995;RSQ=0.9969;ERATE=0.0003;THETA=0.0013;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 70188530 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188620 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8629;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70188654 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7640;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0003;AVGPOST=0.9995;RSQ=0.1496;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70188833 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8863;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70188851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70188860 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.698;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70188897 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7730;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70188956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5932;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70189433 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.560;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4823;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70189447 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0918;AVGPOST=0.9988;RSQ=0.9949;ERATE=0.0003;THETA=0.0004;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 70189481 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8539;ERATE=0.0007;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70189516 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7814;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70189612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70189848 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.6513;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70189894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0079;AVGPOST=0.9998;RSQ=0.9888;ERATE=0.0003;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70189920 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.9951;AVGPOST=0.9993;RSQ=0.9382;ERATE=0.0004;THETA=0.0006;AC=2174;AN=2184 GT:DS:GL:BD 0.99542123 1 1 70189926 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70190146 . G GT 25 PASS INDEL;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.6421;ERATE=0.0006;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70190163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0046;AVGPOST=0.9993;RSQ=0.9536;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70190182 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0113;AVGPOST=0.9979;RSQ=0.9244;ERATE=0.0004;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70190475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0068;AVGPOST=0.9952;RSQ=0.7348;ERATE=0.0003;THETA=0.0035;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70190549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0037;AVGPOST=0.9990;RSQ=0.9019;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70190563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.7340;ERATE=0.0009;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70190567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0920;AVGPOST=0.9980;RSQ=0.9909;ERATE=0.0004;THETA=0.0005;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 70190620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70190715 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0001;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0008;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70190747 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70190768 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6560;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70190813 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0028;AVGPOST=0.9977;RSQ=0.6390;ERATE=0.0010;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70190907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6963;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70191115 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.935;LDAF=0.9814;AVGPOST=0.9970;RSQ=0.9371;ERATE=0.0005;THETA=0.0007;AC=2146;AN=2184 GT:DS:GL:BD 0.98260075 1 1 70191266 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70191277 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70191285 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8495;ERATE=0.0003;THETA=0.0033;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70191328 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70191330 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70191331 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8057;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70191382 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70191439 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70191467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70191522 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8323;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70191589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0056;AVGPOST=0.9996;RSQ=0.9654;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70191610 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9062;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70191762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0034;AVGPOST=0.9993;RSQ=0.9262;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70191810 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9614;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70191861 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0027;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70191889 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70191993 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70192088 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0012;AVGPOST=0.9987;RSQ=0.5297;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70192120 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0170;AVGPOST=0.9984;RSQ=0.9610;ERATE=0.0003;THETA=0.0010;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70192126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70192133 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6873;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70192189 . C CCT 58 PASS INDEL;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0048;AVGPOST=0.9950;RSQ=0.5961;ERATE=0.0007;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70192279 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6517;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70192280 . AC A 377 PASS INDEL;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.7941;ERATE=0.0005;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70192320 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9993;RSQ=0.8795;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70192473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1404;AVGPOST=0.9976;RSQ=0.9920;ERATE=0.0004;THETA=0.0006;AC=307;AN=2184 GT:DS:GL:BD 0.14056776 0 1 70192474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0020;AVGPOST=0.9991;RSQ=0.8235;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70192487 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.870;LDAF=0.0049;AVGPOST=0.9976;RSQ=0.8082;ERATE=0.0009;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70192553 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8374;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70192582 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.833;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8175;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70192620 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70192629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0093;AVGPOST=0.9997;RSQ=0.9840;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70192704 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0065;AVGPOST=0.9997;RSQ=0.9798;ERATE=0.0002;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70192772 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3144;AVGPOST=0.9953;RSQ=0.9914;ERATE=0.0003;THETA=0.0011;AC=686;AN=2184 GT:DS:GL:BD 0.31410256 0 1 70192903 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0015;AVGPOST=0.9986;RSQ=0.6474;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70192960 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0707;AVGPOST=0.9981;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70192994 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70193022 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0040;AVGPOST=0.9980;RSQ=0.8133;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70193087 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.575;LDAF=0.0062;AVGPOST=0.9964;RSQ=0.7608;ERATE=0.0006;THETA=0.0034;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70193125 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.517;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6544;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70193172 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.765;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.6777;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70193259 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7928;ERATE=0.0003;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70193322 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.966;BRSQ=0.765;LDAF=0.9306;AVGPOST=0.9620;RSQ=0.7929;ERATE=0.0008;THETA=0.0026;AC=2040;AN=2184 GT:DS:GL:BD 0.93406594 1 1 70193639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5170;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70193700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.462;LDAF=0.0022;AVGPOST=0.9982;RSQ=0.6233;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70193707 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.727;LDAF=0.0053;AVGPOST=0.9969;RSQ=0.7375;ERATE=0.0007;THETA=0.0006;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70193711 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.980;LDAF=0.0641;AVGPOST=0.9945;RSQ=0.9681;ERATE=0.0005;THETA=0.0004;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70193718 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0131;AVGPOST=0.9957;RSQ=0.8624;ERATE=0.0006;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70193721 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.407;LDAF=0.0113;AVGPOST=0.9883;RSQ=0.6142;ERATE=0.0012;THETA=0.0016;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70193764 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.464;LDAF=0.0052;AVGPOST=0.9968;RSQ=0.7235;ERATE=0.0007;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70193845 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.572;LDAF=0.0065;AVGPOST=0.9946;RSQ=0.6660;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70193890 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.522;LDAF=0.0172;AVGPOST=0.9834;RSQ=0.6193;ERATE=0.0007;THETA=0.0061;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70193979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6919;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70194212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7282;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70194266 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9750;ERATE=0.0002;THETA=0.0010;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70194470 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9850;ERATE=0.0002;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70194525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7462;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70194528 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9602;ERATE=0.0002;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70194583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9201;ERATE=0.0002;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70194694 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0350;AVGPOST=0.9984;RSQ=0.9841;ERATE=0.0002;THETA=0.0007;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70194733 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9713;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70194835 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0030;AVGPOST=0.9995;RSQ=0.9550;ERATE=0.0002;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70194839 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.750;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8703;ERATE=0.0002;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70194936 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9998;RSQ=0.9909;ERATE=0.0002;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70194978 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70195105 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0300;AVGPOST=0.9986;RSQ=0.9851;ERATE=0.0002;THETA=0.0014;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 70195279 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70195297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0023;AVGPOST=0.9995;RSQ=0.9078;ERATE=0.0004;THETA=0.0025;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70195308 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9864;ERATE=0.0003;THETA=0.0010;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70195512 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70195548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0062;AVGPOST=0.9992;RSQ=0.9389;ERATE=0.0004;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70195553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0712;AVGPOST=0.9991;RSQ=0.9946;ERATE=0.0004;THETA=0.0020;AC=156;AN=2184 GT:DS:GL:BD 0.07142857 0 1 70195570 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0002;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70195724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70195768 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0042;AVGPOST=0.9990;RSQ=0.8981;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70195954 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70195973 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0055;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70196118 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0742;AVGPOST=0.9973;RSQ=0.9852;ERATE=0.0002;THETA=0.0009;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 70196208 . TA T 60 PASS INDEL;BAVGPOST=1.000;BRSQ=0.664;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6140;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70196225 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.609;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.6960;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70196260 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9482;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70196349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0010;AVGPOST=0.9985;RSQ=0.4261;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70196394 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.947;LDAF=0.0054;AVGPOST=0.9993;RSQ=0.9456;ERATE=0.0002;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70196529 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8840;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70196558 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3013;AVGPOST=0.9948;RSQ=0.9910;ERATE=0.0004;THETA=0.0006;AC=658;AN=2184 GT:DS:GL:BD 0.30128205 0 1 70196635 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3669;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0004;THETA=0.0005;AC=800;AN=2184 GT:DS:GL:BD 0.36630037 0 1 70196692 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6772;ERATE=0.0003;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70196917 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7873;ERATE=0.0002;THETA=0.0030;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70197023 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0625;AVGPOST=0.9993;RSQ=0.9958;ERATE=0.0003;THETA=0.0003;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70197130 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70197188 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6784;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70197196 . T TA 1490 PASS INDEL;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0133;AVGPOST=0.9987;RSQ=0.9599;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70197207 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6639;ERATE=0.0003;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70197222 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5229;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70197254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7421;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70197324 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6956;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70197352 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.8968;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70197366 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.926;BRSQ=0.859;LDAF=0.6380;AVGPOST=0.8613;RSQ=0.7888;ERATE=0.0305;THETA=0.0002;AC=1454;AN=2184 GT:DS:GL:BD 0.66575092 1 1 70197539 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.7157;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70197571 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.6020;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70197870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0868;AVGPOST=0.9994;RSQ=0.9973;ERATE=0.0002;THETA=0.0002;AC=190;AN=2184 GT:DS:GL:BD 0.08699634 0 1 70197943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1501;AVGPOST=0.9985;RSQ=0.9960;ERATE=0.0004;THETA=0.0012;AC=329;AN=2184 GT:DS:GL:BD 0.15064102 0 1 70198042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.632;LDAF=0.0200;AVGPOST=0.9850;RSQ=0.7107;ERATE=0.0039;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70198108 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.982;LDAF=0.0843;AVGPOST=0.9881;RSQ=0.9421;ERATE=0.0013;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 70198109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.860;LDAF=0.0068;AVGPOST=0.9992;RSQ=0.9531;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70198110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.818;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8203;ERATE=0.0005;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70198142 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.725;LDAF=0.0114;AVGPOST=0.9993;RSQ=0.9711;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70198196 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9632;ERATE=0.0004;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70198296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.5664;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70198307 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.8967;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70198518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9925;ERATE=0.0002;THETA=0.0016;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70198576 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0002;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70198657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8599;ERATE=0.0002;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70198787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0489;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0002;THETA=0.0003;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 70198868 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8348;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70199128 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0133;AVGPOST=0.9996;RSQ=0.9891;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70199215 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0078;AVGPOST=1.0000;RSQ=0.9972;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70199230 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7178;AVGPOST=0.9960;RSQ=0.9923;ERATE=0.0008;THETA=0.0004;AC=1570;AN=2184 GT:DS:GL:BD 0.71886444 1 1 70199385 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0024;AVGPOST=0.9968;RSQ=0.5518;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70199470 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0224;AVGPOST=0.9999;RSQ=0.9970;ERATE=0.0002;THETA=0.0003;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70199478 . CA C 2998 PASS INDEL;BAVGPOST=0.896;BRSQ=0.764;LDAF=0.2394;AVGPOST=0.9048;RSQ=0.8306;ERATE=0.0098;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 70199510 . A AT 293 PASS INDEL;BAVGPOST=0.982;BRSQ=0.573;LDAF=0.0335;AVGPOST=0.9651;RSQ=0.5776;ERATE=0.0072;THETA=0.0002;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70199512 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.968;LDAF=0.2830;AVGPOST=0.9937;RSQ=0.9888;ERATE=0.0008;THETA=0.0005;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 70199513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.806;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70199535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.2859;AVGPOST=0.9964;RSQ=0.9938;ERATE=0.0006;THETA=0.0002;AC=626;AN=2184 GT:DS:GL:BD 0.28663003 0 1 70199583 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70199634 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.739;LDAF=0.0021;AVGPOST=0.9977;RSQ=0.5760;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70199656 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.805;LDAF=0.0047;AVGPOST=0.9989;RSQ=0.9103;ERATE=0.0002;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70199668 . G GT 628 PASS INDEL;BAVGPOST=0.998;BRSQ=0.851;LDAF=0.0089;AVGPOST=0.9979;RSQ=0.9083;ERATE=0.0004;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70199696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9878;ERATE=0.0002;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70199787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0088;AVGPOST=0.9996;RSQ=0.9778;ERATE=0.0002;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70199824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.966;LDAF=0.0226;AVGPOST=0.9974;RSQ=0.9541;ERATE=0.0004;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70199867 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0025;AVGPOST=0.9977;RSQ=0.6084;ERATE=0.0004;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70200017 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0054;AVGPOST=0.9977;RSQ=0.8394;ERATE=0.0004;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70200021 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70200164 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0810;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0002;THETA=0.0003;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 70200533 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0002;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70200549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0060;AVGPOST=0.9989;RSQ=0.9237;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70200585 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0041;AVGPOST=0.9991;RSQ=0.9065;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70200653 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8039;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70200704 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.922;LDAF=0.0143;AVGPOST=0.9966;RSQ=0.9214;ERATE=0.0004;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70200893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.7029;ERATE=0.0009;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70200917 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6432;AVGPOST=0.9978;RSQ=0.9958;ERATE=0.0007;THETA=0.0004;AC=1405;AN=2184 GT:DS:GL:BD 0.64331502 1 1 70201020 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.8096;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70201119 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70201185 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7566;ERATE=0.0002;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70201193 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7561;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70201302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7307;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70201325 . T TA 35 PASS INDEL;BAVGPOST=0.997;BRSQ=0.500;LDAF=0.0023;AVGPOST=0.9970;RSQ=0.4888;ERATE=0.0005;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70201475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7754;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70201504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.5559;AVGPOST=0.9975;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=1215;AN=2184 GT:DS:GL:BD 0.55631870 1 1 70201575 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0115;AVGPOST=0.9984;RSQ=0.9425;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70201610 . TTC T 1063 PASS INDEL;BAVGPOST=0.920;BRSQ=0.767;LDAF=0.1774;AVGPOST=0.9394;RSQ=0.8503;ERATE=0.0046;THETA=0.0003;AC=389;AN=2184 GT:DS:GL:BD 0.17811355 0 1 70201638 rs34326453 TCTC T 23450 PASS INDEL;BAVGPOST=0.960;BRSQ=0.905;LDAF=0.2338;AVGPOST=0.9823;RSQ=0.9626;ERATE=0.0007;THETA=0.0005;AC=513;AN=2184 GT:DS:GL:BD 0.23489010 0 1 70201639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6102;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70201662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.843;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7769;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70201685 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9917;ERATE=0.0002;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70201762 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6469;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70201846 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0035;AVGPOST=0.9991;RSQ=0.9006;ERATE=0.0002;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70201900 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7117;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70201937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0009;AVGPOST=0.9994;RSQ=0.7258;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70202003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0032;AVGPOST=0.9991;RSQ=0.8984;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70202067 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0078;AVGPOST=0.9998;RSQ=0.9887;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70202159 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7589;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70202179 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7153;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70202216 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.909;LDAF=0.0032;AVGPOST=0.9986;RSQ=0.8184;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70202303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9546;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70202307 . A AC 165 PASS INDEL;BAVGPOST=0.999;BRSQ=0.742;LDAF=0.0036;AVGPOST=0.9957;RSQ=0.4853;ERATE=0.0007;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70202467 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6014;AVGPOST=0.9906;RSQ=0.9849;ERATE=0.0004;THETA=0.0002;AC=1316;AN=2184 GT:DS:GL:BD 0.60256410 1 1 70202602 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.769;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70202613 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.4889;AVGPOST=0.9932;RSQ=0.9886;ERATE=0.0005;THETA=0.0004;AC=1068;AN=2184 GT:DS:GL:BD 0.48901099 0 1 70202628 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0173;AVGPOST=0.9985;RSQ=0.9641;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70202648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0052;AVGPOST=0.9989;RSQ=0.9242;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70202682 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0167;AVGPOST=0.9995;RSQ=0.9866;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70202728 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9988;RSQ=0.9416;ERATE=0.0004;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70202732 . CAGT C 77 PASS INDEL;BAVGPOST=0.999;BRSQ=0.631;LDAF=0.0035;AVGPOST=0.9955;RSQ=0.4474;ERATE=0.0008;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70202741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0018;AVGPOST=0.9976;RSQ=0.4267;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70202746 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70202857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0147;AVGPOST=0.9987;RSQ=0.9614;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70202870 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0183;AVGPOST=0.9989;RSQ=0.9759;ERATE=0.0002;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70202973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6961;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70203020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9985;RSQ=0.5705;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70203096 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.976;LDAF=0.5282;AVGPOST=0.9674;RSQ=0.9521;ERATE=0.0046;THETA=0.0005;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 70203134 . C CAATA 12321 PASS INDEL;BAVGPOST=0.877;BRSQ=0.670;LDAF=0.2739;AVGPOST=0.8146;RSQ=0.5878;ERATE=0.0696;THETA=0.0004;AC=478;AN=2184 GT:DS:GL:BD 0.21886447 0 1 70203203 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.859;LDAF=0.3526;AVGPOST=0.8952;RSQ=0.8072;ERATE=0.0356;THETA=0.0005;AC=753;AN=2184 GT:DS:GL:BD 0.34478021 0 1 70203215 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0285;AVGPOST=0.9998;RSQ=0.9964;ERATE=0.0002;THETA=0.0004;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 70203374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70203378 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6725;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70203436 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0082;AVGPOST=0.9994;RSQ=0.9674;ERATE=0.0003;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70203585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.8995;ERATE=0.0002;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70203765 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70203830 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.9110;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70203900 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0082;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0011;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70203964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70203994 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0002;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70204016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0050;AVGPOST=0.9998;RSQ=0.9855;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70204065 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8403;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70204591 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9026;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70204666 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.894;LDAF=0.0031;AVGPOST=0.9991;RSQ=0.8742;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70204761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9999;RSQ=0.9918;ERATE=0.0002;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70204770 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70204797 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0598;AVGPOST=0.9993;RSQ=0.9959;ERATE=0.0002;THETA=0.0003;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 70204801 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0025;AVGPOST=0.9996;RSQ=0.9544;ERATE=0.0006;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70204914 . C CA 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5708;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70204974 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70204985 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70204993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0026;AVGPOST=0.9996;RSQ=0.9569;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70205231 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0164;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0002;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70205326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0512;AVGPOST=1.0000;RSQ=0.9996;ERATE=0.0002;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 70205340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9959;ERATE=0.0002;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70205348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0512;AVGPOST=0.9999;RSQ=0.9992;ERATE=0.0002;THETA=0.0003;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 70205416 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70205581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.952;LDAF=0.0274;AVGPOST=0.9992;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70205719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.725;LDAF=0.0025;AVGPOST=0.9970;RSQ=0.5441;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70205726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6373;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70205762 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0254;AVGPOST=0.9957;RSQ=0.9323;ERATE=0.0005;THETA=0.0005;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 70205809 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0135;AVGPOST=0.9995;RSQ=0.9831;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70205842 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0120;AVGPOST=0.9997;RSQ=0.9895;ERATE=0.0003;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70205901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70205955 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7719;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70206000 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0022;AVGPOST=0.9978;RSQ=0.6085;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70206434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9995;RSQ=0.9607;ERATE=0.0002;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70206442 . TA T 11088 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0773;AVGPOST=0.9995;RSQ=0.9965;ERATE=0.0002;THETA=0.0006;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70206475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70206530 . A AATAT 3218 PASS INDEL;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0156;AVGPOST=0.9985;RSQ=0.9631;ERATE=0.0003;THETA=0.0006;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70206623 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70206679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9919;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70206782 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.2760;AVGPOST=0.9961;RSQ=0.9924;ERATE=0.0003;THETA=0.0006;AC=603;AN=2184 GT:DS:GL:BD 0.27609891 0 1 70206822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8606;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70206855 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6796;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70207045 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8338;ERATE=0.0002;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70207098 . CAT C 604 PASS INDEL;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70207164 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0307;AVGPOST=0.9999;RSQ=0.9980;ERATE=0.0002;THETA=0.0013;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 70207177 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0048;AVGPOST=0.9984;RSQ=0.8888;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70207213 . A AT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.8935;ERATE=0.0002;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70207392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0022;AVGPOST=0.9989;RSQ=0.7930;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70207398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7607;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70207548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.915;LDAF=0.1004;AVGPOST=0.9885;RSQ=0.9507;ERATE=0.0004;THETA=0.0007;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 70207592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0279;AVGPOST=0.9988;RSQ=0.9829;ERATE=0.0003;THETA=0.0006;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70207690 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9628;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70207751 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4229;ERATE=0.0007;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70207848 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.716;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5854;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70207998 . CCTCAGGTGAT C 708 PASS INDEL;BAVGPOST=0.997;BRSQ=0.745;LDAF=0.0043;AVGPOST=0.9967;RSQ=0.7175;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70208033 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.809;LDAF=0.0050;AVGPOST=0.9978;RSQ=0.8173;ERATE=0.0005;THETA=0.0011;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70208081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0050;AVGPOST=0.9990;RSQ=0.9104;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70208082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=0.9994;RSQ=0.9917;ERATE=0.0003;THETA=0.0007;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70208131 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7366;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70208158 . CACTTA C 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6548;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70208322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70208367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.6213;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70208410 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.6699;ERATE=0.0005;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70208525 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5231;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70208528 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.598;LDAF=0.0021;AVGPOST=0.9978;RSQ=0.5536;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70208552 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0275;AVGPOST=0.9989;RSQ=0.9842;ERATE=0.0003;THETA=0.0008;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70208604 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8624;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70208639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0101;AVGPOST=0.9997;RSQ=0.9848;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70208676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0439;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0008;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 70208789 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70208864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9994;RSQ=0.9570;ERATE=0.0003;THETA=0.0010;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70208878 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6151;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70208901 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7238;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70208905 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9734;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70208920 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.7204;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70208934 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7101;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70209062 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9999;RSQ=0.9516;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70209266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7344;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70209316 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.713;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70209330 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7737;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70209449 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70209544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0285;AVGPOST=0.9972;RSQ=0.9593;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 70209635 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.5452;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70209798 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.916;LDAF=0.0125;AVGPOST=0.9974;RSQ=0.9176;ERATE=0.0005;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70209901 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70209949 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0404;AVGPOST=0.9990;RSQ=0.9896;ERATE=0.0003;THETA=0.0005;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70209967 . G GA 122 PASS INDEL;BAVGPOST=0.988;BRSQ=0.469;LDAF=0.0249;AVGPOST=0.9660;RSQ=0.4605;ERATE=0.0057;THETA=0.0007;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70210156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0020;AVGPOST=0.9986;RSQ=0.6835;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70210198 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.7448;ERATE=0.0003;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70210212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8194;ERATE=0.0006;THETA=0.0016;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70210370 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6528;ERATE=0.0006;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70210395 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70210443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7787;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70210469 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70210473 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70210498 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0119;AVGPOST=0.9993;RSQ=0.9795;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70210774 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0024;AVGPOST=0.9985;RSQ=0.7800;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70210804 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.945;LDAF=0.0217;AVGPOST=0.9985;RSQ=0.9705;ERATE=0.0003;THETA=0.0005;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70210813 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0158;AVGPOST=0.9992;RSQ=0.9847;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70210845 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70210861 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8858;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70210867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7426;ERATE=0.0005;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70211148 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0118;AVGPOST=0.9995;RSQ=0.9858;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70211262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5332;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70211291 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7970;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70211293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.9027;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70211338 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1615;AVGPOST=0.9994;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 70211383 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9593;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70211416 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7332;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70211466 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70211494 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0014;AVGPOST=0.9997;RSQ=0.8923;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70211648 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6920;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70211721 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70211769 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1536;AVGPOST=0.9994;RSQ=0.9986;ERATE=0.0003;THETA=0.0006;AC=336;AN=2184 GT:DS:GL:BD 0.15384616 0 1 70211933 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0227;AVGPOST=0.9992;RSQ=0.9850;ERATE=0.0003;THETA=0.0009;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70211943 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0319;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0005;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70211963 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70212044 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5093;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70212054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0322;AVGPOST=0.9989;RSQ=0.9886;ERATE=0.0003;THETA=0.0003;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70212093 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0006;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70212163 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0037;AVGPOST=0.9983;RSQ=0.8169;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70212349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.841;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70212375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.898;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70212513 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6065;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70212555 . CA C 156 PASS INDEL;BAVGPOST=0.999;BRSQ=0.949;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.6805;ERATE=0.0006;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70212636 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9255;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70212834 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0019;AVGPOST=0.9992;RSQ=0.8383;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70212873 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0071;AVGPOST=0.9993;RSQ=0.9555;ERATE=0.0003;THETA=0.0009;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70212957 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70213098 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6725;AVGPOST=0.9968;RSQ=0.9945;ERATE=0.0005;THETA=0.0003;AC=1468;AN=2184 GT:DS:GL:BD 0.67216116 1 1 70213184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0032;AVGPOST=0.9999;RSQ=0.9797;ERATE=0.0003;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70213258 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.723;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6208;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70213364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7358;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70213424 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0121;AVGPOST=0.9995;RSQ=0.9842;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70213453 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0480;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 70213481 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70213516 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70213602 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0016;AVGPOST=0.9989;RSQ=0.7238;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70213742 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0028;AVGPOST=1.0000;RSQ=0.9921;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70213743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.986;LDAF=0.3278;AVGPOST=0.9852;RSQ=0.9808;ERATE=0.0027;THETA=0.0004;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 70213888 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0481;AVGPOST=0.9997;RSQ=0.9971;ERATE=0.0003;THETA=0.0005;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 70213943 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.659;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6687;ERATE=0.0009;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70213978 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4491;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70213993 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214130 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.862;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6978;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0481;AVGPOST=0.9995;RSQ=0.9947;ERATE=0.0003;THETA=0.0039;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 70214159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7748;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70214208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0024;AVGPOST=0.9993;RSQ=0.8784;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70214263 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.4802;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214315 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5413;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214318 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.730;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.6516;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70214363 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70214455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.951;LDAF=0.6428;AVGPOST=0.9697;RSQ=0.9512;ERATE=0.0061;THETA=0.0017;AC=1420;AN=2184 GT:DS:GL:BD 0.65018314 1 1 70214483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.6240;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70214548 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.3308;AVGPOST=0.9944;RSQ=0.9921;ERATE=0.0009;THETA=0.0003;AC=721;AN=2184 GT:DS:GL:BD 0.33012819 0 1 70214682 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.994;LDAF=0.3842;AVGPOST=0.9940;RSQ=0.9918;ERATE=0.0004;THETA=0.0009;AC=837;AN=2184 GT:DS:GL:BD 0.38324177 0 1 70214731 rs35939550 G GT 38498 PASS INDEL;BAVGPOST=0.990;BRSQ=0.989;LDAF=0.4018;AVGPOST=0.9852;RSQ=0.9807;ERATE=0.0024;THETA=0.0005;AC=877;AN=2184 GT:DS:GL:BD 0.40155679 0 1 70214922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0690;AVGPOST=0.9975;RSQ=0.9845;ERATE=0.0005;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70215027 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.861;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6620;ERATE=0.0004;THETA=0.0065;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70215076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8725;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70215099 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0031;AVGPOST=0.9992;RSQ=0.8750;ERATE=0.0004;THETA=0.0040;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70215160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0027;AVGPOST=0.9980;RSQ=0.7126;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70215200 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6661;AVGPOST=0.9963;RSQ=0.9936;ERATE=0.0005;THETA=0.0010;AC=1455;AN=2184 GT:DS:GL:BD 0.66620880 1 1 70215231 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.845;LDAF=0.0024;AVGPOST=0.9986;RSQ=0.7600;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70215310 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0547;AVGPOST=0.9986;RSQ=0.9897;ERATE=0.0003;THETA=0.0005;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 70215315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70215375 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0122;AVGPOST=0.9994;RSQ=0.9799;ERATE=0.0003;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70215456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.941;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9404;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70215469 rs72233245 AGGACTAAATG A 73827 PASS INDEL;BAVGPOST=0.960;BRSQ=0.951;LDAF=0.3777;AVGPOST=0.9721;RSQ=0.9658;ERATE=0.0005;THETA=0.0004;AC=838;AN=2184 GT:DS:GL:BD 0.38369963 0 1 70215596 rs72233245 TAAATGGG T 54299 PASS INDEL;BAVGPOST=0.960;BRSQ=0.951;LDAF=0.3760;AVGPOST=0.9700;RSQ=0.9632;ERATE=0.0007;THETA=0.0004;AC=835;AN=2184 GT:DS:GL:BD 0.38232601 0 1 70215601 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.617;LDAF=0.0401;AVGPOST=0.9585;RSQ=0.5760;ERATE=0.0140;THETA=0.0005;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 70215644 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.431;LDAF=0.0199;AVGPOST=0.9746;RSQ=0.5117;ERATE=0.0076;THETA=0.0017;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70215656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70215767 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70215773 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70215777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0032;AVGPOST=0.9980;RSQ=0.7513;ERATE=0.0010;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70215789 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6891;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70215804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.712;LDAF=0.0084;AVGPOST=0.9920;RSQ=0.6264;ERATE=0.0043;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70215833 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0029;AVGPOST=0.9990;RSQ=0.8571;ERATE=0.0003;THETA=0.0016;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70215921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0543;AVGPOST=0.9992;RSQ=0.9927;ERATE=0.0003;THETA=0.0008;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 70215981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70216002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7041;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70216007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6593;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70216013 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.750;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7323;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70216049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0099;AVGPOST=0.9990;RSQ=0.9560;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70216099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.7725;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70216172 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6355;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70216449 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8308;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70216498 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0182;AVGPOST=0.9985;RSQ=0.9675;ERATE=0.0003;THETA=0.0005;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70216608 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8369;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70216641 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0035;AVGPOST=0.9984;RSQ=0.8162;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70216771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9861;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70216832 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6553;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70216882 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.929;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70216964 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9083;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70217011 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0021;AVGPOST=0.9980;RSQ=0.6287;ERATE=0.0009;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70217183 . G GT 248 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9362;ERATE=0.0004;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70217205 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.1823;AVGPOST=0.9968;RSQ=0.9915;ERATE=0.0006;THETA=0.0003;AC=399;AN=2184 GT:DS:GL:BD 0.18269230 0 1 70217337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9993;RSQ=0.7760;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70217399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70217407 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0055;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70217485 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70217526 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70217589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0427;AVGPOST=0.9995;RSQ=0.9950;ERATE=0.0003;THETA=0.0012;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70217655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70217664 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6603;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70217674 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70217727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.703;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5313;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70218105 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8973;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70218287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5966;ERATE=0.0003;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70218295 . CTA C 64 PASS INDEL;BAVGPOST=0.983;BRSQ=0.508;LDAF=0.0391;AVGPOST=0.9482;RSQ=0.4432;ERATE=0.0099;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70218390 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4595;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70218398 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5636;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70218400 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0016;AVGPOST=0.9979;RSQ=0.4835;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70218402 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4683;AVGPOST=0.9939;RSQ=0.9913;ERATE=0.0006;THETA=0.0004;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 70218455 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.797;LDAF=0.0031;AVGPOST=0.9968;RSQ=0.5905;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70218540 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.8287;AVGPOST=0.9975;RSQ=0.9949;ERATE=0.0003;THETA=0.0010;AC=1811;AN=2184 GT:DS:GL:BD 0.82921243 1 1 70218545 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70218550 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.973;LDAF=0.0319;AVGPOST=0.9969;RSQ=0.9620;ERATE=0.0004;THETA=0.0011;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70218666 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.692;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4808;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70218667 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.732;LDAF=0.0057;AVGPOST=0.9935;RSQ=0.5718;ERATE=0.0007;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70218718 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.437;LDAF=0.0113;AVGPOST=0.9862;RSQ=0.5045;ERATE=0.0012;THETA=0.0003;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70218864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.934;BRSQ=0.854;LDAF=0.7614;AVGPOST=0.8706;RSQ=0.7793;ERATE=0.0114;THETA=0.0005;AC=1730;AN=2184 GT:DS:GL:BD 0.79212457 1 1 70218879 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.915;LDAF=0.0258;AVGPOST=0.9755;RSQ=0.6108;ERATE=0.0023;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70218886 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0132;AVGPOST=0.9991;RSQ=0.9708;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70218951 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0259;AVGPOST=0.9961;RSQ=0.9367;ERATE=0.0003;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70219024 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.600;LDAF=0.0063;AVGPOST=0.9947;RSQ=0.6855;ERATE=0.0005;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70219039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0120;AVGPOST=0.9976;RSQ=0.9243;ERATE=0.0005;THETA=0.0009;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70219080 . C CT 310 PASS INDEL;BAVGPOST=0.998;BRSQ=0.919;LDAF=0.0160;AVGPOST=0.9951;RSQ=0.8750;ERATE=0.0006;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70219137 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.4675;AVGPOST=0.9941;RSQ=0.9914;ERATE=0.0010;THETA=0.0002;AC=1025;AN=2184 GT:DS:GL:BD 0.46932235 0 1 70219163 . CT C 51 PASS INDEL;BAVGPOST=0.974;BRSQ=0.388;LDAF=0.0401;AVGPOST=0.9427;RSQ=0.3966;ERATE=0.0084;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70219180 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6847;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70219300 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.731;LDAF=0.0029;AVGPOST=0.9979;RSQ=0.6871;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70219451 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4675;AVGPOST=0.9965;RSQ=0.9949;ERATE=0.0005;THETA=0.0006;AC=1023;AN=2184 GT:DS:GL:BD 0.46840659 0 1 70219476 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70219605 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6436;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70219624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0101;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0016;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70219797 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.9280;AVGPOST=0.9971;RSQ=0.9847;ERATE=0.0006;THETA=0.0006;AC=2028;AN=2184 GT:DS:GL:BD 0.92857140 1 1 70219863 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70219948 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6964;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70220014 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3604;AVGPOST=0.9967;RSQ=0.9945;ERATE=0.0004;THETA=0.0013;AC=785;AN=2184 GT:DS:GL:BD 0.35943222 0 1 70220092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.825;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0004;THETA=0.0035;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70220256 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5797;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70220518 . AC A 72 PASS INDEL;BAVGPOST=1.000;BRSQ=0.745;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4059;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70220622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70220629 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70220683 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0029;AVGPOST=0.9976;RSQ=0.6464;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70220698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0153;AVGPOST=0.9994;RSQ=0.9812;ERATE=0.0004;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70220722 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.971;LDAF=0.1416;AVGPOST=0.9926;RSQ=0.9769;ERATE=0.0004;THETA=0.0006;AC=306;AN=2184 GT:DS:GL:BD 0.14010990 0 1 70220879 . AATTT A 99 PASS INDEL;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0013;AVGPOST=0.9980;RSQ=0.4670;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70221185 . TA T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.731;LDAF=0.0016;AVGPOST=0.9978;RSQ=0.3804;ERATE=0.0004;THETA=0.0057;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70221275 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5518;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70221284 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7148;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70221357 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3190;AVGPOST=0.9957;RSQ=0.9929;ERATE=0.0008;THETA=0.0007;AC=694;AN=2184 GT:DS:GL:BD 0.31776556 0 1 70221462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70221763 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5761;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0008;AC=1259;AN=2184 GT:DS:GL:BD 0.57646519 1 1 70221871 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5826;AVGPOST=0.9959;RSQ=0.9936;ERATE=0.0006;THETA=0.0009;AC=1275;AN=2184 GT:DS:GL:BD 0.58379120 1 1 70221914 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4453;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70221971 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7950;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70221977 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4823;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70222016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5677;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70222063 . TG T 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.763;LDAF=0.0015;AVGPOST=0.9982;RSQ=0.5232;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70222131 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.551;LDAF=0.0021;AVGPOST=0.9970;RSQ=0.4572;ERATE=0.0005;THETA=0.0061;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70222134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.3372;AVGPOST=0.9937;RSQ=0.9894;ERATE=0.0005;THETA=0.0006;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 70222135 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9555;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70222157 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7701;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70222430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70222457 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9932;ERATE=0.0003;THETA=0.0008;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70222505 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70222627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0189;AVGPOST=0.9977;RSQ=0.9536;ERATE=0.0005;THETA=0.0004;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 70222734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6501;AVGPOST=0.9978;RSQ=0.9960;ERATE=0.0004;THETA=0.0007;AC=1418;AN=2184 GT:DS:GL:BD 0.64926738 1 1 70222735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9995;RSQ=0.9874;ERATE=0.0004;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70222847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5166;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70222899 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0420;AVGPOST=0.9990;RSQ=0.9886;ERATE=0.0005;THETA=0.0003;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 70222935 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0061;AVGPOST=0.9981;RSQ=0.8726;ERATE=0.0003;THETA=0.0010;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70222956 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8344;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70222983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.894;LDAF=0.0056;AVGPOST=0.9985;RSQ=0.8874;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70223167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5273;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70223324 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70223429 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6887;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70223520 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0045;AVGPOST=0.9979;RSQ=0.8274;ERATE=0.0005;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70223530 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9996;RSQ=0.9908;ERATE=0.0004;THETA=0.0006;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70223942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7856;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70223949 . TGA T 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5640;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70224019 . CTG C 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0026;AVGPOST=0.9989;RSQ=0.8116;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70224022 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6016;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70224055 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8158;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70224074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.946;LDAF=0.6301;AVGPOST=0.9334;RSQ=0.8925;ERATE=0.0174;THETA=0.0005;AC=1391;AN=2184 GT:DS:GL:BD 0.63690478 1 1 70224263 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.951;LDAF=0.9663;AVGPOST=0.9958;RSQ=0.9533;ERATE=0.0004;THETA=0.0004;AC=2111;AN=2184 GT:DS:GL:BD 0.96657509 1 1 70224310 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.693;LDAF=0.0034;AVGPOST=0.9970;RSQ=0.6832;ERATE=0.0006;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70224393 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8603;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70224538 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7986;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70224751 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70224775 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70224780 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.860;LDAF=0.0025;AVGPOST=0.9989;RSQ=0.8078;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70224827 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0464;AVGPOST=0.9993;RSQ=0.9938;ERATE=0.0003;THETA=0.0005;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 70224835 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0106;AVGPOST=0.9997;RSQ=0.9891;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70224851 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6000;AVGPOST=0.9972;RSQ=0.9956;ERATE=0.0005;THETA=0.0004;AC=1310;AN=2184 GT:DS:GL:BD 0.59981686 1 1 70225009 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5110;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70225026 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.960;LDAF=0.2465;AVGPOST=0.9773;RSQ=0.9552;ERATE=0.0051;THETA=0.0002;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 70225155 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0295;AVGPOST=0.9994;RSQ=0.9915;ERATE=0.0003;THETA=0.0006;AC=64;AN=2184 GT:DS:GL:BD 0.02930403 0 1 70225267 . AATAG A 1296 PASS INDEL;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0101;AVGPOST=0.9948;RSQ=0.7978;ERATE=0.0007;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70225468 . ATC A 80199 PASS INDEL;BAVGPOST=1.000;BRSQ=0;LDAF=0.9973;AVGPOST=0.9979;RSQ=0.6902;ERATE=0.0004;THETA=0.0003;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 70225501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70225688 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70225735 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.4004;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70225872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.842;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.4179;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70226022 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.5929;AVGPOST=0.9960;RSQ=0.9943;ERATE=0.0004;THETA=0.0006;AC=1295;AN=2184 GT:DS:GL:BD 0.59294873 1 1 70226035 rs11443665 T TA 5457 PASS INDEL;BAVGPOST=0.992;BRSQ=0.924;LDAF=0.0617;AVGPOST=0.9819;RSQ=0.8951;ERATE=0.0015;THETA=0.0003;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 70226071 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4423;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70226075 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6502;AVGPOST=0.9970;RSQ=0.9946;ERATE=0.0005;THETA=0.0008;AC=1419;AN=2184 GT:DS:GL:BD 0.64972526 1 1 70226181 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7835;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70226232 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9132;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70226257 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0029;AVGPOST=0.9996;RSQ=0.9323;ERATE=0.0004;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70226262 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0095;AVGPOST=0.9988;RSQ=0.9490;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70226442 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.961;BRSQ=0.918;LDAF=0.2878;AVGPOST=0.9667;RSQ=0.9384;ERATE=0.0008;THETA=0.0005;AC=623;AN=2184 GT:DS:GL:BD 0.28525642 0 1 70226614 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9528;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70226665 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.993;LDAF=0.1950;AVGPOST=0.9962;RSQ=0.9902;ERATE=0.0005;THETA=0.0036;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 70226672 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6454;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70226752 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.813;LDAF=0.0046;AVGPOST=0.9987;RSQ=0.8698;ERATE=0.0003;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70226961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9481;ERATE=0.0003;THETA=0.0043;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70226974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5306;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70227029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6668;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70227032 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0114;AVGPOST=0.9989;RSQ=0.9552;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70227071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0061;AVGPOST=0.9997;RSQ=0.9754;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70227393 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.679;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4917;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70227401 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7534;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70227406 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9289;ERATE=0.0003;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70227433 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6469;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70227440 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6288;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70227567 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9904;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70227673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5527;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70227809 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7744;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70227852 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4976;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0004;THETA=0.0006;AC=1087;AN=2184 GT:DS:GL:BD 0.49771062 0 1 70227876 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7062;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70227922 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1312;AVGPOST=0.9970;RSQ=0.9909;ERATE=0.0007;THETA=0.0002;AC=285;AN=2184 GT:DS:GL:BD 0.13049451 0 1 70228070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0291;AVGPOST=0.9982;RSQ=0.9785;ERATE=0.0005;THETA=0.0002;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 70228252 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0184;AVGPOST=0.9977;RSQ=0.9467;ERATE=0.0007;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70228262 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8801;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70228322 . C CT 878 PASS INDEL;BAVGPOST=0.995;BRSQ=0.863;LDAF=0.0184;AVGPOST=0.9950;RSQ=0.8933;ERATE=0.0007;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70228337 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70228345 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1297;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0004;THETA=0.0003;AC=283;AN=2184 GT:DS:GL:BD 0.12957875 0 1 70228383 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8664;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70228407 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5808;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70228437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0139;AVGPOST=0.9996;RSQ=0.9880;ERATE=0.0004;THETA=0.0002;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70228508 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0285;AVGPOST=0.9996;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=62;AN=2184 GT:DS:GL:BD 0.02838828 0 1 70228573 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8523;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70228586 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3087;AVGPOST=0.9971;RSQ=0.9948;ERATE=0.0004;THETA=0.0002;AC=671;AN=2184 GT:DS:GL:BD 0.30723444 0 1 70228640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70228641 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70228712 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4968;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70228780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0139;AVGPOST=0.9997;RSQ=0.9898;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70228874 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1286;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0005;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 70228989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70229020 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7809;ERATE=0.0012;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70229025 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=1.0000;RSQ=0.9995;ERATE=0.0003;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 70229076 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0159;AVGPOST=0.9997;RSQ=0.9923;ERATE=0.0003;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70229137 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1435;AVGPOST=0.9990;RSQ=0.9970;ERATE=0.0004;THETA=0.0003;AC=314;AN=2184 GT:DS:GL:BD 0.14377290 0 1 70229142 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0023;AVGPOST=0.9990;RSQ=0.8473;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70229252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.939;LDAF=0.0175;AVGPOST=0.9979;RSQ=0.9542;ERATE=0.0004;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70229278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0055;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0026;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70229351 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6018;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70229373 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0248;AVGPOST=0.9997;RSQ=0.9939;ERATE=0.0003;THETA=0.0003;AC=54;AN=2184 GT:DS:GL:BD 0.02472528 0 1 70229602 rs5780977 TGGAC T 67273 PASS INDEL;BAVGPOST=0.993;BRSQ=0.989;LDAF=0.5301;AVGPOST=0.9848;RSQ=0.9783;ERATE=0.0048;THETA=0.0004;AC=1160;AN=2184 GT:DS:GL:BD 0.53113556 1 1 70229642 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70229689 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1872;AVGPOST=0.9974;RSQ=0.9925;ERATE=0.0006;THETA=0.0005;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 70229741 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0006;AVGPOST=0.9992;RSQ=0.4382;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70229754 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5170;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70229825 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0142;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0004;THETA=0.0002;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70230053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0014;AVGPOST=0.9998;RSQ=0.9244;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70230158 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.8076;AVGPOST=0.9985;RSQ=0.9962;ERATE=0.0004;THETA=0.0004;AC=1765;AN=2184 GT:DS:GL:BD 0.80815017 1 1 70230290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70230296 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.814;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.7003;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70230329 . CAAG C 65 PASS INDEL;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6112;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70230352 . CT C 1660 PASS INDEL;BAVGPOST=0.989;BRSQ=0.735;LDAF=0.0167;AVGPOST=0.9964;RSQ=0.9069;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70230373 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9656;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70230404 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9717;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70230474 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0162;AVGPOST=0.9992;RSQ=0.9776;ERATE=0.0004;THETA=0.0002;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70230605 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.737;LDAF=0.0029;AVGPOST=0.9977;RSQ=0.6606;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70230716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1459;AVGPOST=0.9974;RSQ=0.9926;ERATE=0.0004;THETA=0.0006;AC=317;AN=2184 GT:DS:GL:BD 0.14514652 0 1 70230758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0052;AVGPOST=0.9940;RSQ=0.5188;ERATE=0.0007;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70230811 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1578;AVGPOST=0.9965;RSQ=0.9881;ERATE=0.0006;THETA=0.0003;AC=344;AN=2184 GT:DS:GL:BD 0.15750916 0 1 70230829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0176;AVGPOST=0.9941;RSQ=0.8791;ERATE=0.0012;THETA=0.0003;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70230870 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.953;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.9443;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70230881 rs66498564 A AAGAT 8060 PASS INDEL;BAVGPOST=0.986;BRSQ=0.946;LDAF=0.1407;AVGPOST=0.9565;RSQ=0.8664;ERATE=0.0063;THETA=0.0003;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 70230899 rs66498564 G GA 668 PASS INDEL;BAVGPOST=0.988;BRSQ=0.693;LDAF=0.0420;AVGPOST=0.9590;RSQ=0.6252;ERATE=0.0039;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70230909 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5775;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70231118 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70231125 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4046;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70231173 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9472;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70231225 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0146;AVGPOST=0.9990;RSQ=0.9773;ERATE=0.0003;THETA=0.0004;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70231266 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.922;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6849;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70231287 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.8240;AVGPOST=0.9973;RSQ=0.9928;ERATE=0.0003;THETA=0.0004;AC=1801;AN=2184 GT:DS:GL:BD 0.82463372 1 1 70231303 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9614;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70231411 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7527;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70231510 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1582;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0004;THETA=0.0007;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 70231523 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0041;AVGPOST=0.9986;RSQ=0.8695;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70231621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.8037;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70231627 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1295;AVGPOST=0.9973;RSQ=0.9905;ERATE=0.0004;THETA=0.0002;AC=280;AN=2184 GT:DS:GL:BD 0.12820514 0 1 70231642 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.976;LDAF=0.0138;AVGPOST=0.9995;RSQ=0.9859;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70231676 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6496;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70231744 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1876;AVGPOST=0.9983;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=410;AN=2184 GT:DS:GL:BD 0.18772894 0 1 70231775 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7718;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70231846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9267;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70231858 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8401;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70231938 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9208;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70231962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.659;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8123;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70231967 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7412;ERATE=0.0005;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70231997 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6220;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.791;LDAF=0.0034;AVGPOST=0.9983;RSQ=0.8157;ERATE=0.0003;THETA=0.0060;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70232096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232148 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4916;AVGPOST=0.9969;RSQ=0.9955;ERATE=0.0006;THETA=0.0003;AC=1072;AN=2184 GT:DS:GL:BD 0.49084249 0 1 70232265 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0074;AVGPOST=0.9998;RSQ=0.9881;ERATE=0.0003;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70232283 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8390;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70232302 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0083;AVGPOST=0.9995;RSQ=0.9735;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70232325 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232406 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0148;AVGPOST=0.9997;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70232444 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.870;LDAF=0.0147;AVGPOST=0.9960;RSQ=0.8953;ERATE=0.0005;THETA=0.0006;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70232494 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6797;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70232509 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232639 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.747;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0005;THETA=0.0072;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232698 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0404;AVGPOST=0.9989;RSQ=0.9883;ERATE=0.0004;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70232726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8346;ERATE=0.0003;THETA=0.0019;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70232754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5286;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70232756 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.972;LDAF=0.0137;AVGPOST=0.9984;RSQ=0.9546;ERATE=0.0003;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70232757 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6470;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70232777 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.5903;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70232840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.953;LDAF=0.0185;AVGPOST=0.9984;RSQ=0.9669;ERATE=0.0003;THETA=0.0003;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70232964 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0880;AVGPOST=0.9978;RSQ=0.9875;ERATE=0.0003;THETA=0.0003;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 70233056 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0402;AVGPOST=0.9995;RSQ=0.9938;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70233102 . AGG A 1450 PASS INDEL;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0115;AVGPOST=0.9966;RSQ=0.8882;ERATE=0.0006;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70233109 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9992;RSQ=0.6733;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70233190 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0249;AVGPOST=0.9985;RSQ=0.9721;ERATE=0.0004;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70233208 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70233314 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0338;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0004;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70233354 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0339;AVGPOST=0.9997;RSQ=0.9957;ERATE=0.0003;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70233367 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0153;AVGPOST=0.9990;RSQ=0.9755;ERATE=0.0006;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70233433 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70233447 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70233450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.802;LDAF=0.0034;AVGPOST=0.9981;RSQ=0.7593;ERATE=0.0009;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70233526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70233600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.916;LDAF=0.0080;AVGPOST=0.9984;RSQ=0.9246;ERATE=0.0004;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70233632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70233685 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4593;AVGPOST=0.9987;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=1001;AN=2184 GT:DS:GL:BD 0.45833334 0 1 70233774 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7860;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70233825 . G GGTA 197 PASS INDEL;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0025;AVGPOST=0.9971;RSQ=0.5422;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70233870 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.7173;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70233886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0880;AVGPOST=0.9987;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=192;AN=2184 GT:DS:GL:BD 0.08791209 0 1 70233892 . CCT C 952 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0095;AVGPOST=0.9973;RSQ=0.9017;ERATE=0.0004;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70233902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0339;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0006;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70233905 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0340;AVGPOST=0.9997;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70233978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.6021;AVGPOST=0.9965;RSQ=0.9951;ERATE=0.0007;THETA=0.0004;AC=1313;AN=2184 GT:DS:GL:BD 0.60119045 1 1 70234035 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234046 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7052;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234132 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.970;LDAF=0.0082;AVGPOST=0.9989;RSQ=0.9426;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70234158 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234184 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8366;ERATE=0.0006;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70234200 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0125;AVGPOST=0.9997;RSQ=0.9896;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70234342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5165;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0160;AVGPOST=0.9990;RSQ=0.9758;ERATE=0.0003;THETA=0.0007;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70234423 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4936;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0003;THETA=0.0009;AC=1076;AN=2184 GT:DS:GL:BD 0.49267399 0 1 70234479 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7298;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234572 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.706;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.6356;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234584 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0047;AVGPOST=0.9997;RSQ=0.9718;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70234716 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1707;AVGPOST=0.9954;RSQ=0.9885;ERATE=0.0003;THETA=0.0006;AC=371;AN=2184 GT:DS:GL:BD 0.16987179 0 1 70234727 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0040;AVGPOST=0.9992;RSQ=0.9094;ERATE=0.0006;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70234787 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0027;AVGPOST=0.9987;RSQ=0.7930;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70234860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.995;LDAF=0.4974;AVGPOST=0.9964;RSQ=0.9950;ERATE=0.0005;THETA=0.0006;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 70234922 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6184;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234965 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0159;AVGPOST=0.9993;RSQ=0.9837;ERATE=0.0003;THETA=0.0008;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70234987 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234995 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6902;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70234997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0404;AVGPOST=0.9996;RSQ=0.9950;ERATE=0.0003;THETA=0.0006;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70235058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70235097 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6749;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70235285 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0339;AVGPOST=0.9992;RSQ=0.9886;ERATE=0.0003;THETA=0.0015;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70235322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70235330 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0318;AVGPOST=0.9989;RSQ=0.9855;ERATE=0.0003;THETA=0.0015;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70235356 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0150;AVGPOST=0.9977;RSQ=0.9434;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70235453 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70235592 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.4938;AVGPOST=0.9887;RSQ=0.9858;ERATE=0.0015;THETA=0.0013;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 70235612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0320;AVGPOST=0.9991;RSQ=0.9885;ERATE=0.0003;THETA=0.0080;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 70235677 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8835;ERATE=0.0003;THETA=0.0059;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70235787 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70235848 . C CA 101 PASS INDEL;BAVGPOST=0.999;BRSQ=0.708;LDAF=0.0022;AVGPOST=0.9965;RSQ=0.3802;ERATE=0.0006;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70235942 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0093;AVGPOST=0.9984;RSQ=0.9356;ERATE=0.0003;THETA=0.0107;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70236100 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.926;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9343;ERATE=0.0004;THETA=0.0039;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70236136 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0004;THETA=0.0017;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70236187 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.759;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70236302 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5624;ERATE=0.0005;THETA=0.0088;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70236369 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8907;ERATE=0.0003;THETA=0.0038;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70236387 . G GA 5192 PASS INDEL;BAVGPOST=0.995;BRSQ=0.938;LDAF=0.0216;AVGPOST=0.9977;RSQ=0.9540;ERATE=0.0005;THETA=0.0020;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70236409 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.971;LDAF=0.0074;AVGPOST=0.9994;RSQ=0.9692;ERATE=0.0003;THETA=0.0268;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70236419 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.671;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8241;ERATE=0.0003;THETA=0.0060;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70236479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0126;AVGPOST=0.9991;RSQ=0.9719;ERATE=0.0003;THETA=0.0037;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70236623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0040;AVGPOST=0.9988;RSQ=0.8801;ERATE=0.0003;THETA=0.0106;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70236668 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.961;LDAF=0.0191;AVGPOST=0.9955;RSQ=0.9240;ERATE=0.0005;THETA=0.0022;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70236733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9384;ERATE=0.0003;THETA=0.0063;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70236748 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0017;AVGPOST=0.9986;RSQ=0.6584;ERATE=0.0004;THETA=0.0070;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70236771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0066;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70236869 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0064;AVGPOST=0.9983;RSQ=0.8913;ERATE=0.0007;THETA=0.0085;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70236891 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0027;AVGPOST=0.9989;RSQ=0.8199;ERATE=0.0004;THETA=0.0046;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70237019 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.918;LDAF=0.3675;AVGPOST=0.9444;RSQ=0.9188;ERATE=0.0075;THETA=0.0153;AC=793;AN=2184 GT:DS:GL:BD 0.36309522 0 1 70237028 . GC G 3083 PASS INDEL;BAVGPOST=0.967;BRSQ=0.821;LDAF=0.0747;AVGPOST=0.9583;RSQ=0.7819;ERATE=0.0043;THETA=0.0223;AC=140;AN=2184 GT:DS:GL:BD 0.06410257 0 1 70237116 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.807;LDAF=0.0019;AVGPOST=0.9995;RSQ=0.8829;ERATE=0.0003;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70237119 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8612;ERATE=0.0004;THETA=0.0160;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70237184 rs10482762 GACA G 6063 PASS INDEL;BAVGPOST=0.988;BRSQ=0.895;LDAF=0.0362;AVGPOST=0.9922;RSQ=0.9203;ERATE=0.0014;THETA=0.0230;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70237221 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0020;AVGPOST=0.9988;RSQ=0.7817;ERATE=0.0003;THETA=0.0112;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70237235 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.803;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.6417;ERATE=0.0003;THETA=0.0069;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70237241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8912;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70237264 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8483;ERATE=0.0003;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70237297 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0003;THETA=0.0097;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70237336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.871;LDAF=0.0025;AVGPOST=0.9985;RSQ=0.7618;ERATE=0.0006;THETA=0.0028;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70237337 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0003;THETA=0.0203;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70237396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0095;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70237427 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70237598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.783;LDAF=0.0047;AVGPOST=0.9981;RSQ=0.8428;ERATE=0.0004;THETA=0.0053;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70237738 . TTTTA T 532 PASS INDEL;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0086;AVGPOST=0.9979;RSQ=0.8997;ERATE=0.0007;THETA=0.0008;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70237745 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.969;LDAF=0.1138;AVGPOST=0.9899;RSQ=0.9586;ERATE=0.0006;THETA=0.0039;AC=248;AN=2184 GT:DS:GL:BD 0.11355311 0 1 70237784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0063;AVGPOST=0.9967;RSQ=0.7668;ERATE=0.0005;THETA=0.0042;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70237850 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.724;LDAF=0.0110;AVGPOST=0.9941;RSQ=0.7819;ERATE=0.0006;THETA=0.0018;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70237864 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0020;AVGPOST=0.9978;RSQ=0.5117;ERATE=0.0008;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70237872 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.960;LDAF=0.0071;AVGPOST=0.9979;RSQ=0.8751;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70237904 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.752;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4506;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70237988 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70238025 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0019;AVGPOST=0.9997;RSQ=0.9215;ERATE=0.0003;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70238091 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0022;AVGPOST=0.9996;RSQ=0.9270;ERATE=0.0002;THETA=0.0056;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70238204 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0130;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0002;THETA=0.0013;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70238234 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.966;LDAF=0.1104;AVGPOST=0.9921;RSQ=0.9700;ERATE=0.0005;THETA=0.0010;AC=238;AN=2184 GT:DS:GL:BD 0.10897436 0 1 70238306 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.986;LDAF=0.3497;AVGPOST=0.9885;RSQ=0.9819;ERATE=0.0005;THETA=0.0118;AC=763;AN=2184 GT:DS:GL:BD 0.34935898 0 1 70238379 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0081;AVGPOST=0.9993;RSQ=0.9680;ERATE=0.0002;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70238438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9294;ERATE=0.0002;THETA=0.0037;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70238545 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0047;AVGPOST=0.9993;RSQ=0.9344;ERATE=0.0003;THETA=0.0052;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70238735 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0056;AVGPOST=0.9997;RSQ=0.9723;ERATE=0.0003;THETA=0.0007;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70238758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.862;LDAF=0.0047;AVGPOST=0.9983;RSQ=0.8462;ERATE=0.0005;THETA=0.0140;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70238846 rs113792052 T TA 922 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0145;AVGPOST=0.9975;RSQ=0.9355;ERATE=0.0004;THETA=0.0022;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70239011 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6723;ERATE=0.0004;THETA=0.0107;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70239018 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0037;AVGPOST=0.9968;RSQ=0.6826;ERATE=0.0005;THETA=0.0159;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70239128 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9976;RSQ=0.4143;ERATE=0.0005;THETA=0.0068;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70239289 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0021;AVGPOST=0.9988;RSQ=0.7490;ERATE=0.0003;THETA=0.0091;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70239343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.757;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0002;THETA=0.0087;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70239386 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.945;LDAF=0.3025;AVGPOST=0.9603;RSQ=0.9311;ERATE=0.0026;THETA=0.0046;AC=649;AN=2184 GT:DS:GL:BD 0.29716116 0 1 70239410 . TC T 134 PASS INDEL;BAVGPOST=0.999;BRSQ=0.691;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7059;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70239560 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7847;ERATE=0.0003;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70239611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.721;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0074;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70239696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8933;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70239715 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5205;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70239834 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70239837 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.841;LDAF=0.0104;AVGPOST=0.9955;RSQ=0.8198;ERATE=0.0005;THETA=0.0018;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70239870 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.5031;ERATE=0.0004;THETA=0.0125;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240076 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.651;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4361;ERATE=0.0005;THETA=0.0122;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240137 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.878;LDAF=0.0061;AVGPOST=0.9968;RSQ=0.8091;ERATE=0.0004;THETA=0.0029;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70240153 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4979;ERATE=0.0006;THETA=0.0062;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240204 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5051;ERATE=0.0004;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240217 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0160;AVGPOST=0.9966;RSQ=0.9263;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70240361 . TG T 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5650;ERATE=0.0004;THETA=0.0041;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240788 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0037;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70240821 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6674;ERATE=0.0002;THETA=0.0080;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70240890 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3243;AVGPOST=0.9978;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=709;AN=2184 GT:DS:GL:BD 0.32463369 0 1 70240913 . GTTTC G 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.657;LDAF=0.0026;AVGPOST=0.9975;RSQ=0.5692;ERATE=0.0006;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70241016 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.871;LDAF=0.0048;AVGPOST=0.9990;RSQ=0.9101;ERATE=0.0003;THETA=0.0008;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70241345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4007;AVGPOST=0.9968;RSQ=0.9946;ERATE=0.0004;THETA=0.0006;AC=875;AN=2184 GT:DS:GL:BD 0.40064102 0 1 70241350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0002;THETA=0.0024;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70241380 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0104;AVGPOST=0.9984;RSQ=0.9425;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70241399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.875;LDAF=0.0039;AVGPOST=0.9986;RSQ=0.8675;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70241408 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5077;AVGPOST=0.9935;RSQ=0.9900;ERATE=0.0011;THETA=0.0003;AC=1108;AN=2184 GT:DS:GL:BD 0.50732601 1 1 70241437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70241472 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6675;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70241538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9870;ERATE=0.0002;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70241583 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.862;LDAF=0.0105;AVGPOST=0.9981;RSQ=0.9305;ERATE=0.0003;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70241587 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8576;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70241649 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7755;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70241722 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.684;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4641;ERATE=0.0006;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70241850 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0138;AVGPOST=0.9989;RSQ=0.9747;ERATE=0.0003;THETA=0.0008;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70241917 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0319;AVGPOST=0.9989;RSQ=0.9875;ERATE=0.0003;THETA=0.0012;AC=69;AN=2184 GT:DS:GL:BD 0.03159341 0 1 70241960 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0016;AVGPOST=0.9984;RSQ=0.5987;ERATE=0.0006;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70242016 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0113;AVGPOST=0.9992;RSQ=0.9710;ERATE=0.0002;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70242071 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5442;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242169 rs71683657 TTTTAA T 79151 PASS INDEL;BAVGPOST=0.991;BRSQ=0.984;LDAF=0.5017;AVGPOST=0.9896;RSQ=0.9832;ERATE=0.0035;THETA=0.0004;AC=1101;AN=2184 GT:DS:GL:BD 0.50412089 1 1 70242200 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9457;ERATE=0.0002;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70242231 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5076;AVGPOST=0.9984;RSQ=0.9972;ERATE=0.0004;THETA=0.0003;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 70242292 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5076;AVGPOST=0.9980;RSQ=0.9966;ERATE=0.0004;THETA=0.0014;AC=1110;AN=2184 GT:DS:GL:BD 0.50824177 1 1 70242299 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0002;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70242338 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5081;AVGPOST=0.9980;RSQ=0.9969;ERATE=0.0004;THETA=0.0010;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 70242462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5642;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242475 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9994;RSQ=0.9064;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70242522 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9108;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70242528 . ATTGC A 5599 PASS INDEL;BAVGPOST=0.995;BRSQ=0.929;LDAF=0.0299;AVGPOST=0.9975;RSQ=0.9700;ERATE=0.0004;THETA=0.0008;AC=67;AN=2184 GT:DS:GL:BD 0.03067766 0 1 70242572 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.943;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242676 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.4990;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242710 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0630;AVGPOST=0.9998;RSQ=0.9984;ERATE=0.0003;THETA=0.0005;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 70242898 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.7426;ERATE=0.0006;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70242918 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.4824;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70242938 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0110;AVGPOST=0.9990;RSQ=0.9665;ERATE=0.0003;THETA=0.0039;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70243077 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0629;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0009;AC=137;AN=2184 GT:DS:GL:BD 0.06272894 0 1 70243099 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6612;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70243208 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4802;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70243258 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8079;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70243270 . T TAA 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0018;AVGPOST=0.9987;RSQ=0.7140;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70243298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9896;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70243437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0072;AVGPOST=0.9995;RSQ=0.9544;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70243558 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70243598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.8252;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70243604 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7891;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70243622 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70243663 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3160;AVGPOST=0.9981;RSQ=0.9961;ERATE=0.0005;THETA=0.0003;AC=691;AN=2184 GT:DS:GL:BD 0.31639194 0 1 70243698 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0215;AVGPOST=0.9985;RSQ=0.9730;ERATE=0.0003;THETA=0.0005;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70243787 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0218;AVGPOST=0.9980;RSQ=0.9674;ERATE=0.0003;THETA=0.0003;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70243839 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5689;AVGPOST=0.9990;RSQ=0.9983;ERATE=0.0005;THETA=0.0005;AC=1242;AN=2184 GT:DS:GL:BD 0.56868130 1 1 70243972 . TG T 11 PASS INDEL;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5432;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70243979 . C CT 12 PASS INDEL;BAVGPOST=1.000;BRSQ=0.757;LDAF=0.0030;AVGPOST=0.9962;RSQ=0.4900;ERATE=0.0011;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70244038 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7784;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70244073 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7163;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244117 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0090;AVGPOST=0.9993;RSQ=0.9678;ERATE=0.0003;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70244223 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.904;LDAF=0.0108;AVGPOST=0.9972;RSQ=0.9094;ERATE=0.0004;THETA=0.0007;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70244237 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.655;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6263;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244320 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70244341 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70244349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3062;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 70244466 . CCT C 532 PASS INDEL;BAVGPOST=0.999;BRSQ=0.835;LDAF=0.0044;AVGPOST=0.9976;RSQ=0.7695;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70244475 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.5696;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244705 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6009;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3065;AVGPOST=0.9988;RSQ=0.9974;ERATE=0.0005;THETA=0.0008;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 70244737 . C CT 6 PASS INDEL;BAVGPOST=1.000;BRSQ=0.687;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6523;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70244787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7210;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.3060;AVGPOST=0.9987;RSQ=0.9975;ERATE=0.0005;THETA=0.0002;AC=670;AN=2184 GT:DS:GL:BD 0.30677655 0 1 70244876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.605;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6343;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70244879 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.958;LDAF=0.0127;AVGPOST=0.9986;RSQ=0.9573;ERATE=0.0003;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70244930 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.919;LDAF=0.0188;AVGPOST=0.9978;RSQ=0.9531;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70245022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3807;AVGPOST=0.9981;RSQ=0.9968;ERATE=0.0004;THETA=0.0007;AC=831;AN=2184 GT:DS:GL:BD 0.38049451 0 1 70245122 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.995;LDAF=0.5675;AVGPOST=0.9981;RSQ=0.9967;ERATE=0.0006;THETA=0.0008;AC=1238;AN=2184 GT:DS:GL:BD 0.56684983 1 1 70245156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7263;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70245195 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.848;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8896;ERATE=0.0004;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70245293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0017;AVGPOST=0.9991;RSQ=0.7893;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70245528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70245557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6282;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70245585 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0060;AVGPOST=0.9998;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70245619 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0026;AVGPOST=0.9992;RSQ=0.8649;ERATE=0.0004;THETA=0.0027;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70245683 . T TA 14306 PASS INDEL;BAVGPOST=0.919;BRSQ=0.841;LDAF=0.5472;AVGPOST=0.8694;RSQ=0.7945;ERATE=0.0447;THETA=0.0005;AC=1237;AN=2184 GT:DS:GL:BD 0.56639194 1 1 70245733 rs34403374 A AT 74593 PASS INDEL;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6474;AVGPOST=0.9942;RSQ=0.9904;ERATE=0.0005;THETA=0.0004;AC=1413;AN=2184 GT:DS:GL:BD 0.64697802 1 1 70245735 . CG C 254 PASS INDEL;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0059;AVGPOST=0.9960;RSQ=0.7536;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70246037 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.910;LDAF=0.0359;AVGPOST=0.9915;RSQ=0.9098;ERATE=0.0004;THETA=0.0008;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70246093 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4345;ERATE=0.0003;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70246155 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70246192 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0003;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70246343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0819;AVGPOST=0.9997;RSQ=0.9986;ERATE=0.0003;THETA=0.0005;AC=179;AN=2184 GT:DS:GL:BD 0.08195971 0 1 70246350 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.949;LDAF=0.0221;AVGPOST=0.9970;RSQ=0.9502;ERATE=0.0004;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70246551 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9432;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70246666 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0031;AVGPOST=0.9993;RSQ=0.8960;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70246684 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.7144;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70246750 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7708;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70246753 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6432;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70246762 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7330;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70246781 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.7800;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70246819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7587;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70246849 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7976;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70246861 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2461;AVGPOST=0.9969;RSQ=0.9947;ERATE=0.0003;THETA=0.0005;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 70246868 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.6310;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70246995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0016;AVGPOST=0.9996;RSQ=0.9018;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70247017 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70247064 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0175;AVGPOST=0.9998;RSQ=0.9940;ERATE=0.0003;THETA=0.0005;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70247102 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0085;AVGPOST=0.9968;RSQ=0.8244;ERATE=0.0006;THETA=0.0005;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70247117 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.873;LDAF=0.0100;AVGPOST=0.9973;RSQ=0.9058;ERATE=0.0006;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70247202 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.4263;ERATE=0.0006;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70247256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.862;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9280;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70247336 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.859;LDAF=0.0066;AVGPOST=0.9965;RSQ=0.8106;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70247389 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70247414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9998;RSQ=0.9873;ERATE=0.0003;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70247475 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0070;AVGPOST=0.9998;RSQ=0.9842;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70247546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5979;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70247550 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0824;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0003;THETA=0.0005;AC=180;AN=2184 GT:DS:GL:BD 0.08241758 0 1 70247554 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6720;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70247598 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.680;LDAF=0.0045;AVGPOST=0.9957;RSQ=0.5951;ERATE=0.0010;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70247742 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.3867;AVGPOST=0.9995;RSQ=0.9990;ERATE=0.0003;THETA=0.0004;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70247917 . TATA T 108 PASS INDEL;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5838;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70248071 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.956;LDAF=0.0040;AVGPOST=0.9995;RSQ=0.9576;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70248091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70248195 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.688;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70248225 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.6185;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70248293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6066;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70248353 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.6528;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70248365 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0014;AVGPOST=0.9982;RSQ=0.6012;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70248456 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.990;LDAF=0.4207;AVGPOST=0.9971;RSQ=0.9955;ERATE=0.0004;THETA=0.0002;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 70248484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.991;LDAF=0.3862;AVGPOST=0.9979;RSQ=0.9964;ERATE=0.0004;THETA=0.0003;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70248493 . GTTA G 25 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.4251;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70248549 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0517;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=113;AN=2184 GT:DS:GL:BD 0.05173993 0 1 70248602 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6464;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70248604 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.597;LDAF=0.0029;AVGPOST=0.9958;RSQ=0.4130;ERATE=0.0009;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70248613 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3870;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0005;THETA=0.0005;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70248696 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.6197;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70248865 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.3867;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0004;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70248874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6526;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70248877 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70248912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4213;AVGPOST=0.9979;RSQ=0.9970;ERATE=0.0003;THETA=0.0007;AC=919;AN=2184 GT:DS:GL:BD 0.42078754 0 1 70248952 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8601;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70248996 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0233;AVGPOST=0.9997;RSQ=0.9932;ERATE=0.0003;THETA=0.0002;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70249003 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9675;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70249048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7048;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70249098 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9327;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70249106 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0041;AVGPOST=0.9996;RSQ=0.9613;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70249124 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0018;AVGPOST=0.9998;RSQ=0.9435;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70249262 rs76725960 TA T 31193 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2485;AVGPOST=0.9977;RSQ=0.9950;ERATE=0.0005;THETA=0.0005;AC=544;AN=2184 GT:DS:GL:BD 0.24908425 0 1 70249268 . AC A 1851 PASS INDEL;BAVGPOST=0.967;BRSQ=0.919;LDAF=0.2325;AVGPOST=0.9706;RSQ=0.9462;ERATE=0.0005;THETA=0.0002;AC=524;AN=2184 GT:DS:GL:BD 0.23992674 0 1 70249270 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3863;AVGPOST=0.9987;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70249358 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3863;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0004;THETA=0.0003;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70249396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0210;AVGPOST=0.9983;RSQ=0.9661;ERATE=0.0003;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70249472 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0222;AVGPOST=0.9991;RSQ=0.9822;ERATE=0.0003;THETA=0.0003;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70249473 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0109;AVGPOST=0.9996;RSQ=0.9867;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70249498 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2454;AVGPOST=0.9979;RSQ=0.9952;ERATE=0.0006;THETA=0.0003;AC=535;AN=2184 GT:DS:GL:BD 0.24496336 0 1 70249515 . CT C 1007 PASS INDEL;BAVGPOST=0.875;BRSQ=0.568;LDAF=0.1677;AVGPOST=0.8762;RSQ=0.6802;ERATE=0.0121;THETA=0.0004;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 70249543 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3866;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0004;THETA=0.0002;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70249756 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0198;AVGPOST=0.9996;RSQ=0.9919;ERATE=0.0003;THETA=0.0008;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70249997 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6313;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70250132 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7183;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70250266 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0094;AVGPOST=0.9994;RSQ=0.9803;ERATE=0.0003;THETA=0.0001;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70250324 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8362;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70250397 MERGED_DEL_2_7363 GAGACAAGACAGATGTTCTTGTAAGCTTCCTCCAAACTCTAGAAGACTGCGGTACACATTGTAGGCCCATTCGATTTGCTTACTTGAGGGTCCAGTCACAAAGGATTTTAAAGAGCTATTAGAAACCTTTTGAACTCTCATTTCTACCTTTGTTAAATGATAGTCTTTCTTGCATGCATGAGCCCAGAGA GGTG . . SV;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0067;AVGPOST=0.9995;RSQ=0.9681;ERATE=0.0003;THETA=0.0004;CIEND=-32;121;CIPOS=-69;88;END=221754425;HOMLEN=0;HOMSEQ;SOURCE=AssembledBreakpoints_221743952_22 GT:DS:GL:BD 0.00686813 0 1 70250420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.928;LDAF=0.0109;AVGPOST=0.9987;RSQ=0.9572;ERATE=0.0003;THETA=0.0005;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70250597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8383;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70250639 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8549;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70250728 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3859;AVGPOST=0.9977;RSQ=0.9964;ERATE=0.0003;THETA=0.0005;AC=844;AN=2184 GT:DS:GL:BD 0.38644689 0 1 70250742 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.975;LDAF=0.0216;AVGPOST=0.9988;RSQ=0.9817;ERATE=0.0003;THETA=0.0051;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70250755 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3868;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0003;THETA=0.0006;AC=845;AN=2184 GT:DS:GL:BD 0.38690478 0 1 70250812 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70250830 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6315;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70250852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0151;AVGPOST=1.0000;RSQ=0.9985;ERATE=0.0003;THETA=0.0004;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70250907 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0038;AVGPOST=0.9969;RSQ=0.6941;ERATE=0.0011;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70250937 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7284;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70250955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0051;AVGPOST=0.9998;RSQ=0.9829;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70251005 . CT C 42 PASS INDEL;BAVGPOST=0.985;BRSQ=0.086;LDAF=0.1036;AVGPOST=0.8646;RSQ=0.4471;ERATE=0.0040;THETA=0.0004;AC=177;AN=2184 GT:DS:GL:BD 0.08104396 0 1 70251072 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0320;AVGPOST=0.9999;RSQ=0.9987;ERATE=0.0003;THETA=0.0002;AC=70;AN=2184 GT:DS:GL:BD 0.03205128 0 1 70251115 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70251150 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0111;AVGPOST=0.9996;RSQ=0.9874;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70251218 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0019;AVGPOST=0.9980;RSQ=0.5555;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70251338 . TG T 17 PASS INDEL;BAVGPOST=0.999;BRSQ=0.698;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5750;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70251401 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0202;AVGPOST=0.9998;RSQ=0.9951;ERATE=0.0003;THETA=0.0004;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70251413 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7828;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70251434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70251462 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0152;AVGPOST=0.9998;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70251503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7343;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70251504 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.952;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9307;ERATE=0.0004;THETA=0.0005;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70251707 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.901;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5876;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70251750 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6082;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70251854 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6850;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70252030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4038;AVGPOST=0.9990;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=882;AN=2184 GT:DS:GL:BD 0.40384614 0 1 70252062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0112;AVGPOST=0.9994;RSQ=0.9755;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70252113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0403;AVGPOST=0.9990;RSQ=0.9914;ERATE=0.0003;THETA=0.0007;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70252154 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.736;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6732;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70252399 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0025;AVGPOST=0.9980;RSQ=0.7004;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70252525 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0109;AVGPOST=1.0000;RSQ=0.9983;ERATE=0.0003;THETA=0.0003;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70252530 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0038;AVGPOST=0.9984;RSQ=0.8379;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70252591 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3883;AVGPOST=0.9989;RSQ=0.9980;ERATE=0.0005;THETA=0.0006;AC=848;AN=2184 GT:DS:GL:BD 0.38827839 0 1 70252608 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2458;AVGPOST=0.9986;RSQ=0.9969;ERATE=0.0006;THETA=0.0003;AC=536;AN=2184 GT:DS:GL:BD 0.24542125 0 1 70252703 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4968;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70252858 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0475;AVGPOST=0.9996;RSQ=0.9964;ERATE=0.0003;THETA=0.0003;AC=104;AN=2184 GT:DS:GL:BD 0.04761905 0 1 70252975 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0080;AVGPOST=0.9995;RSQ=0.9762;ERATE=0.0003;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70252986 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0064;AVGPOST=0.9984;RSQ=0.8900;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70253003 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.824;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5341;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70253047 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6574;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70253092 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.771;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5725;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70253093 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0056;AVGPOST=0.9973;RSQ=0.8170;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70253254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9992;RSQ=0.9499;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70253365 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5519;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70253370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0019;AVGPOST=0.9991;RSQ=0.8112;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70253523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8935;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70253819 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7994;ERATE=0.0007;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70253981 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254019 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1483;AVGPOST=0.9969;RSQ=0.9899;ERATE=0.0003;THETA=0.0005;AC=324;AN=2184 GT:DS:GL:BD 0.14835165 0 1 70254082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6426;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254097 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254330 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2344;AVGPOST=0.9996;RSQ=0.9991;ERATE=0.0003;THETA=0.0006;AC=511;AN=2184 GT:DS:GL:BD 0.23397435 0 1 70254469 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0195;AVGPOST=0.9994;RSQ=0.9840;ERATE=0.0006;THETA=0.0003;AC=42;AN=2184 GT:DS:GL:BD 0.01923077 0 1 70254477 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7905;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254544 . ATAAC A 828 PASS INDEL;BAVGPOST=0.999;BRSQ=0.906;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.8881;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70254627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70254739 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70254812 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.962;LDAF=0.0220;AVGPOST=0.9988;RSQ=0.9784;ERATE=0.0003;THETA=0.0004;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70254869 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1179;AVGPOST=1.0000;RSQ=0.9998;ERATE=0.0003;THETA=0.0007;AC=258;AN=2184 GT:DS:GL:BD 0.11813187 0 1 70254884 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6453;ERATE=0.0005;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254956 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70254983 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5613;AVGPOST=0.9980;RSQ=0.9972;ERATE=0.0003;THETA=0.0004;AC=1228;AN=2184 GT:DS:GL:BD 0.56227106 1 1 70254989 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0256;AVGPOST=0.9999;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70255106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.867;LDAF=0.0030;AVGPOST=0.9989;RSQ=0.8521;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70255107 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7012;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70255177 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.8401;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70255193 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0500;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70255293 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70255366 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9998;RSQ=0.9899;ERATE=0.0003;THETA=0.0007;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70255374 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0088;AVGPOST=0.9999;RSQ=0.9924;ERATE=0.0003;THETA=0.0002;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70255439 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70255645 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9647;ERATE=0.0007;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70255700 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0473;AVGPOST=0.9993;RSQ=0.9949;ERATE=0.0003;THETA=0.0006;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70255709 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0051;AVGPOST=0.9997;RSQ=0.9728;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70255759 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0029;AVGPOST=0.9998;RSQ=0.9618;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70255760 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.5680;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70255765 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0762;AVGPOST=0.9994;RSQ=0.9960;ERATE=0.0003;THETA=0.0008;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 70255784 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1381;AVGPOST=0.9999;RSQ=0.9996;ERATE=0.0003;THETA=0.0007;AC=302;AN=2184 GT:DS:GL:BD 0.13827839 0 1 70255902 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8672;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70256174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6392;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70256245 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2724;AVGPOST=0.9965;RSQ=0.9938;ERATE=0.0005;THETA=0.0004;AC=595;AN=2184 GT:DS:GL:BD 0.27243590 0 1 70256251 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.699;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7502;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70256771 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0008;AVGPOST=0.9990;RSQ=0.4492;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70256794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.852;LDAF=0.0065;AVGPOST=0.9982;RSQ=0.8872;ERATE=0.0003;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70256800 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7301;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70256884 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9995;RSQ=0.9844;ERATE=0.0003;THETA=0.0003;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70256982 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0012;AVGPOST=0.9992;RSQ=0.7252;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70257174 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0175;AVGPOST=0.9994;RSQ=0.9855;ERATE=0.0003;THETA=0.0004;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70257244 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0174;AVGPOST=0.9990;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70257384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0020;AVGPOST=0.9989;RSQ=0.7698;ERATE=0.0008;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70257534 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.877;LDAF=0.0112;AVGPOST=0.9963;RSQ=0.8508;ERATE=0.0003;THETA=0.0004;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70257535 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7270;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70257566 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70257684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9849;ERATE=0.0003;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70257692 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5729;ERATE=0.0003;THETA=0.0029;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70257743 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70257789 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0016;AVGPOST=0.9994;RSQ=0.8255;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70257916 . G GT 7776 PASS INDEL;BAVGPOST=0.552;BRSQ=0.287;LDAF=0.4943;AVGPOST=0.6606;RSQ=0.4219;ERATE=0.0410;THETA=0.0020;AC=1030;AN=2184 GT:DS:GL:BD 0.47161171 0 1 70257994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.888;BRSQ=0.577;LDAF=0.8305;AVGPOST=0.8410;RSQ=0.5624;ERATE=0.0162;THETA=0.0061;AC=1895;AN=2184 GT:DS:GL:BD 0.86767399 1 1 70257995 . GGT G 12116 PASS INDEL;BAVGPOST=0.948;BRSQ=0.637;LDAF=0.8932;AVGPOST=0.8857;RSQ=0.5593;ERATE=0.0074;THETA=0.0005;AC=2020;AN=2184 GT:DS:GL:BD 0.92490840 1 1 70258000 rs66920623 GT G 15992 PASS INDEL;BAVGPOST=0.954;BRSQ=0.664;LDAF=0.9501;AVGPOST=0.9751;RSQ=0.8074;ERATE=0.0009;THETA=0.0008;AC=2085;AN=2184 GT:DS:GL:BD 0.95467031 1 1 70258001 rs66920623 TGG T 97 PASS INDEL;BAVGPOST=0.919;BRSQ=0.256;LDAF=0.0897;AVGPOST=0.8920;RSQ=0.5067;ERATE=0.0042;THETA=0.0008;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 70258002 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.946;LDAF=0.8003;AVGPOST=0.9631;RSQ=0.9204;ERATE=0.0063;THETA=0.0005;AC=1756;AN=2184 GT:DS:GL:BD 0.80402929 1 1 70258213 . T TA 886 PASS INDEL;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0074;AVGPOST=0.9983;RSQ=0.8904;ERATE=0.0006;THETA=0.0023;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70258263 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.941;LDAF=0.0150;AVGPOST=0.9979;RSQ=0.9458;ERATE=0.0003;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70258300 . A AG 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0010;AVGPOST=0.9993;RSQ=0.7049;ERATE=0.0004;THETA=0.0065;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70258424 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9919;ERATE=0.0003;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70258428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.799;LDAF=0.0053;AVGPOST=0.9983;RSQ=0.8773;ERATE=0.0005;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70258469 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.745;LDAF=0.0128;AVGPOST=0.9953;RSQ=0.8548;ERATE=0.0005;THETA=0.0046;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70258524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.629;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.7527;ERATE=0.0006;THETA=0.0044;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70258584 . C CCA 78 PASS INDEL;BAVGPOST=0.999;BRSQ=0.665;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4949;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70258600 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0240;AVGPOST=0.9987;RSQ=0.9757;ERATE=0.0003;THETA=0.0011;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70258893 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.938;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8136;ERATE=0.0003;THETA=0.0025;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70258957 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0262;AVGPOST=0.9998;RSQ=0.9965;ERATE=0.0003;THETA=0.0011;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70258969 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.7497;AVGPOST=0.9979;RSQ=0.9958;ERATE=0.0005;THETA=0.0008;AC=1637;AN=2184 GT:DS:GL:BD 0.74954212 1 1 70258992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8218;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70259079 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.810;LDAF=0.0059;AVGPOST=0.9990;RSQ=0.9286;ERATE=0.0003;THETA=0.0014;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70259176 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.965;LDAF=0.0105;AVGPOST=0.9999;RSQ=0.9937;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70259213 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.2410;AVGPOST=0.9968;RSQ=0.9937;ERATE=0.0004;THETA=0.0011;AC=526;AN=2184 GT:DS:GL:BD 0.24084249 0 1 70259224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8313;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70259435 . T TA 105 PASS INDEL;BAVGPOST=0.998;BRSQ=0.692;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7860;ERATE=0.0005;THETA=0.0011;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70259483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4644;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70259567 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9994;RSQ=0.9872;ERATE=0.0003;THETA=0.0010;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70259623 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5467;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70259908 . A AC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7384;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70259920 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.903;LDAF=0.0045;AVGPOST=0.9973;RSQ=0.7570;ERATE=0.0015;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70259966 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0211;AVGPOST=0.9997;RSQ=0.9945;ERATE=0.0003;THETA=0.0007;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70260071 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70260094 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0261;AVGPOST=0.9999;RSQ=0.9978;ERATE=0.0003;THETA=0.0012;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70260114 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0022;AVGPOST=0.9986;RSQ=0.7665;ERATE=0.0003;THETA=0.0010;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70260115 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70260169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0023;AVGPOST=0.9977;RSQ=0.5459;ERATE=0.0010;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70260206 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0185;AVGPOST=0.9996;RSQ=0.9916;ERATE=0.0003;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70260332 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.788;LDAF=0.0023;AVGPOST=0.9989;RSQ=0.7780;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70260346 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8582;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70260358 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8344;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70260493 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7377;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70260506 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0039;AVGPOST=0.9979;RSQ=0.7828;ERATE=0.0019;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70260557 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.981;LDAF=0.0711;AVGPOST=0.9983;RSQ=0.9901;ERATE=0.0003;THETA=0.0002;AC=155;AN=2184 GT:DS:GL:BD 0.07097070 0 1 70260631 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.601;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5232;ERATE=0.0005;THETA=0.0019;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70260651 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8576;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70260652 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.981;LDAF=0.7295;AVGPOST=0.9864;RSQ=0.9766;ERATE=0.0026;THETA=0.0010;AC=1599;AN=2184 GT:DS:GL:BD 0.73214287 1 1 70260763 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0234;AVGPOST=0.9995;RSQ=0.9911;ERATE=0.0003;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70260767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5620;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70260886 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5281;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70261100 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.4953;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70261213 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.570;LDAF=0.0010;AVGPOST=0.9986;RSQ=0.3930;ERATE=0.0004;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70261549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.951;BRSQ=0.856;LDAF=0.1660;AVGPOST=0.9627;RSQ=0.9040;ERATE=0.0007;THETA=0.0008;AC=351;AN=2184 GT:DS:GL:BD 0.16071428 0 1 70261672 rs71711459 A ATG 22257 PASS INDEL;BAVGPOST=0.877;BRSQ=0.735;LDAF=0.7608;AVGPOST=0.8669;RSQ=0.7532;ERATE=0.0097;THETA=0.0007;AC=1665;AN=2184 GT:DS:GL:BD 0.76236266 1 1 70261724 . G GTGTA 16842 PASS INDEL;BAVGPOST=0.830;BRSQ=0.649;LDAF=0.6769;AVGPOST=0.7441;RSQ=0.5440;ERATE=0.0353;THETA=0.0010;AC=1569;AN=2184 GT:DS:GL:BD 0.71840662 1 1 70261728 rs71778706 AT A 11958 PASS INDEL;BAVGPOST=0.992;BRSQ=0.162;LDAF=0.9634;AVGPOST=0.9477;RSQ=0.4405;ERATE=0.0043;THETA=0.0003;AC=2137;AN=2184 GT:DS:GL:BD 0.97847986 1 1 70261730 . TATA T 366 PASS INDEL;BAVGPOST=0.985;BRSQ=0.706;LDAF=0.0404;AVGPOST=0.9868;RSQ=0.8703;ERATE=0.0008;THETA=0.0051;AC=87;AN=2184 GT:DS:GL:BD 0.03983517 0 1 70261751 . TATA T 608 PASS INDEL;BAVGPOST=0.959;BRSQ=0.538;LDAF=0.0701;AVGPOST=0.9433;RSQ=0.6611;ERATE=0.0042;THETA=0.0012;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 70261753 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.856;BRSQ=0.723;LDAF=0.6026;AVGPOST=0.7671;RSQ=0.6196;ERATE=0.0412;THETA=0.0007;AC=1397;AN=2184 GT:DS:GL:BD 0.63965201 1 1 70261756 . C CT 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0036;AVGPOST=0.9951;RSQ=0.4505;ERATE=0.0009;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70261809 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.714;LDAF=0.0017;AVGPOST=0.9976;RSQ=0.4337;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70261846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0022;AVGPOST=0.9975;RSQ=0.5927;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70261888 . T TTTTTC 2245 PASS INDEL;BAVGPOST=0.972;BRSQ=0.515;LDAF=0.0241;AVGPOST=0.9940;RSQ=0.8982;ERATE=0.0007;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70262053 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.599;LDAF=0.0082;AVGPOST=0.9957;RSQ=0.8123;ERATE=0.0004;THETA=0.0009;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70262099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.2617;AVGPOST=0.9951;RSQ=0.9909;ERATE=0.0007;THETA=0.0010;AC=572;AN=2184 GT:DS:GL:BD 0.26190478 0 1 70262126 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70262254 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0214;AVGPOST=0.9992;RSQ=0.9873;ERATE=0.0003;THETA=0.0010;AC=46;AN=2184 GT:DS:GL:BD 0.02106227 0 1 70262368 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.983;LDAF=0.2608;AVGPOST=0.9962;RSQ=0.9927;ERATE=0.0008;THETA=0.0012;AC=571;AN=2184 GT:DS:GL:BD 0.26144689 0 1 70262443 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.659;LDAF=0.0017;AVGPOST=0.9982;RSQ=0.5390;ERATE=0.0008;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70262454 . TA T 162 PASS INDEL;BAVGPOST=0.999;BRSQ=0.679;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.5634;ERATE=0.0006;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70262558 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0214;AVGPOST=0.9973;RSQ=0.9482;ERATE=0.0008;THETA=0.0008;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70262607 rs35949210 G GTGTA 14271 PASS INDEL;BAVGPOST=0.756;BRSQ=0.575;LDAF=0.4986;AVGPOST=0.7344;RSQ=0.5387;ERATE=0.0696;THETA=0.0017;AC=1084;AN=2184 GT:DS:GL:BD 0.49633700 0 1 70262786 . ATATAT A 878 PASS INDEL;BAVGPOST=0.906;BRSQ=0.492;LDAF=0.1479;AVGPOST=0.8308;RSQ=0.4599;ERATE=0.0214;THETA=0.0006;AC=184;AN=2184 GT:DS:GL:BD 0.08424909 0 1 70262802 rs59421665 T TA 4643 PASS INDEL;BAVGPOST=0.632;BRSQ=0.351;LDAF=0.4167;AVGPOST=0.7001;RSQ=0.4689;ERATE=0.0505;THETA=0.0009;AC=816;AN=2184 GT:DS:GL:BD 0.37362638 0 1 70262807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0107;AVGPOST=0.9949;RSQ=0.8203;ERATE=0.0008;THETA=0.0006;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70262888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0081;AVGPOST=0.9994;RSQ=0.9686;ERATE=0.0004;THETA=0.0005;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70262950 rs35861755 AT A 12696 PASS INDEL;BAVGPOST=0.992;BRSQ=0.982;LDAF=0.2609;AVGPOST=0.9890;RSQ=0.9803;ERATE=0.0013;THETA=0.0005;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 70262982 . TG T 142 PASS INDEL;BAVGPOST=0.920;BRSQ=0.306;LDAF=0.0607;AVGPOST=0.9510;RSQ=0.7269;ERATE=0.0023;THETA=0.0005;AC=123;AN=2184 GT:DS:GL:BD 0.05631868 0 1 70262989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0076;AVGPOST=0.9969;RSQ=0.8434;ERATE=0.0004;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70262990 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70263160 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.868;LDAF=0.0037;AVGPOST=0.9984;RSQ=0.8325;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70263307 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6629;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70263390 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6122;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70263531 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6616;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70263532 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0012;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70263672 . TGA T 53 PASS INDEL;BAVGPOST=0.994;BRSQ=0.732;LDAF=0.0197;AVGPOST=0.9796;RSQ=0.5927;ERATE=0.0049;THETA=0.0007;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70263676 . CCT C 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0013;AVGPOST=0.9994;RSQ=0.7941;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70263703 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0004;AVGPOST=0.9992;RSQ=0.2789;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70263722 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7149;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70263735 . AT A 1153 PASS INDEL;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0092;AVGPOST=0.9989;RSQ=0.9407;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70263832 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.794;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9157;ERATE=0.0002;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70263880 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8820;ERATE=0.0002;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70264052 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.6849;ERATE=0.0006;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70264207 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0082;AVGPOST=0.9984;RSQ=0.9176;ERATE=0.0003;THETA=0.0005;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70264222 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0293;AVGPOST=0.9989;RSQ=0.9847;ERATE=0.0003;THETA=0.0008;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70264296 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0290;AVGPOST=0.9994;RSQ=0.9902;ERATE=0.0003;THETA=0.0003;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70264306 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7421;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70264606 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6683;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70264607 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70264623 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9421;ERATE=0.0002;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70264690 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.934;LDAF=0.0047;AVGPOST=0.9988;RSQ=0.9156;ERATE=0.0002;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70264733 . GC G 95 PASS INDEL;BAVGPOST=1.000;BRSQ=0.702;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6651;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70264927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9981;RSQ=0.9333;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70264986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7740;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70264999 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6608;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70265005 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70265006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0110;AVGPOST=0.9990;RSQ=0.9659;ERATE=0.0002;THETA=0.0004;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70265077 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1019;AVGPOST=0.9990;RSQ=0.9968;ERATE=0.0002;THETA=0.0004;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 70265161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7497;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70265186 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70265192 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0289;AVGPOST=0.9998;RSQ=0.9960;ERATE=0.0002;THETA=0.0008;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70265238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.1061;AVGPOST=0.9948;RSQ=0.9773;ERATE=0.0004;THETA=0.0009;AC=230;AN=2184 GT:DS:GL:BD 0.10531136 0 1 70265249 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.8967;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70265380 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0472;AVGPOST=0.9995;RSQ=0.9949;ERATE=0.0002;THETA=0.0002;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70265400 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7335;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70265428 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.859;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70265526 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7805;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70265589 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0092;AVGPOST=1.0000;RSQ=0.9976;ERATE=0.0002;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70265634 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0110;AVGPOST=0.9981;RSQ=0.9440;ERATE=0.0003;THETA=0.0014;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70265727 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0093;AVGPOST=0.9998;RSQ=0.9891;ERATE=0.0003;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70265785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4766;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70265786 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0036;AVGPOST=0.9993;RSQ=0.9249;ERATE=0.0002;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70265859 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0027;AVGPOST=0.9978;RSQ=0.7047;ERATE=0.0002;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70265977 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.900;LDAF=0.0122;AVGPOST=0.9978;RSQ=0.9255;ERATE=0.0003;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70266300 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9949;ERATE=0.0002;THETA=0.0008;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70266338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6257;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70266581 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1021;AVGPOST=0.9992;RSQ=0.9972;ERATE=0.0002;THETA=0.0007;AC=223;AN=2184 GT:DS:GL:BD 0.10210623 0 1 70266716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5980;ERATE=0.0002;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70266780 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70266970 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0002;THETA=0.0020;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70266978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0084;AVGPOST=0.9997;RSQ=0.9817;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70267008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0288;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0002;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70267088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0030;AVGPOST=0.9983;RSQ=0.7996;ERATE=0.0002;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70267140 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8733;ERATE=0.0002;THETA=0.0008;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70267241 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0037;AVGPOST=0.9995;RSQ=0.9373;ERATE=0.0004;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70267242 . GC G 325 PASS INDEL;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0002;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70267293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1033;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=226;AN=2184 GT:DS:GL:BD 0.10347985 0 1 70267336 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8763;ERATE=0.0002;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70267337 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267379 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0018;AVGPOST=0.9992;RSQ=0.8364;ERATE=0.0002;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70267430 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6318;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267468 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.579;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0002;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70267517 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5776;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.863;LDAF=0.0029;AVGPOST=0.9989;RSQ=0.8366;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70267646 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7091;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70267673 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0167;AVGPOST=0.9992;RSQ=0.9800;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70267674 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9134;ERATE=0.0002;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70267745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6359;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267776 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4358;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267862 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0172;AVGPOST=0.9992;RSQ=0.9842;ERATE=0.0003;THETA=0.0008;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70267940 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.5874;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70267948 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5398;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70268075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.778;LDAF=0.0055;AVGPOST=0.9948;RSQ=0.6567;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70268088 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8446;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70268137 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2244;AVGPOST=0.9966;RSQ=0.9939;ERATE=0.0005;THETA=0.0011;AC=493;AN=2184 GT:DS:GL:BD 0.22573259 0 1 70268158 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70268201 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3788;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0003;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 70268230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70268239 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70268259 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70268325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70268412 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70268441 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70268565 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.971;LDAF=0.9654;AVGPOST=0.9954;RSQ=0.9423;ERATE=0.0008;THETA=0.0002;AC=2112;AN=2184 GT:DS:GL:BD 0.96703297 1 1 70269103 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6079;ERATE=0.0007;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70269174 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.9802;AVGPOST=0.9986;RSQ=0.9730;ERATE=0.0004;THETA=0.0002;AC=2142;AN=2184 GT:DS:GL:BD 0.98076922 1 1 70269256 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.984;LDAF=0.0706;AVGPOST=0.9966;RSQ=0.9804;ERATE=0.0003;THETA=0.0004;AC=152;AN=2184 GT:DS:GL:BD 0.06959707 0 1 70269298 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0019;AVGPOST=0.9985;RSQ=0.6765;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70269339 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0026;AVGPOST=0.9978;RSQ=0.6411;ERATE=0.0003;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70269342 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2557;AVGPOST=0.9926;RSQ=0.9865;ERATE=0.0020;THETA=0.0004;AC=558;AN=2184 GT:DS:GL:BD 0.25549451 0 1 70269428 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9007;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0003;THETA=0.0003;AC=1967;AN=2184 GT:DS:GL:BD 0.90064102 1 1 70269548 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70269588 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0356;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70269644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5978;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70269678 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0357;AVGPOST=0.9995;RSQ=0.9949;ERATE=0.0003;THETA=0.0002;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70269813 . T TTTC 32785 PASS INDEL;BAVGPOST=0.848;BRSQ=0.586;LDAF=0.6977;AVGPOST=0.7767;RSQ=0.5489;ERATE=0.0744;THETA=0.0003;AC=1664;AN=2184 GT:DS:GL:BD 0.76190478 1 1 70270003 rs35370548 T TC 632 PASS INDEL;BAVGPOST=0.980;BRSQ=0.698;LDAF=0.0378;AVGPOST=0.9880;RSQ=0.8810;ERATE=0.0006;THETA=0.0003;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70270006 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0716;AVGPOST=0.9971;RSQ=0.9813;ERATE=0.0006;THETA=0.0002;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70270099 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70270319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4811;AVGPOST=0.9883;RSQ=0.9838;ERATE=0.0033;THETA=0.0005;AC=1049;AN=2184 GT:DS:GL:BD 0.48031136 0 1 70270326 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.972;LDAF=0.4720;AVGPOST=0.9856;RSQ=0.9799;ERATE=0.0014;THETA=0.0004;AC=1036;AN=2184 GT:DS:GL:BD 0.47435898 0 1 70270451 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.8651;AVGPOST=0.9992;RSQ=0.9969;ERATE=0.0005;THETA=0.0026;AC=1889;AN=2184 GT:DS:GL:BD 0.86492676 1 1 70270490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.749;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.8480;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70270544 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0032;AVGPOST=0.9978;RSQ=0.7037;ERATE=0.0004;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70270575 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.482;LDAF=0.0121;AVGPOST=0.9867;RSQ=0.5914;ERATE=0.0023;THETA=0.0008;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70270580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5927;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70270591 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.971;LDAF=0.2039;AVGPOST=0.9894;RSQ=0.9767;ERATE=0.0011;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 70270612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.4783;AVGPOST=0.9885;RSQ=0.9839;ERATE=0.0009;THETA=0.0003;AC=1050;AN=2184 GT:DS:GL:BD 0.48076922 0 1 70270619 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.926;LDAF=0.1506;AVGPOST=0.9879;RSQ=0.9628;ERATE=0.0005;THETA=0.0004;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 70270706 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0365;AVGPOST=0.9980;RSQ=0.9795;ERATE=0.0006;THETA=0.0007;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70270881 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9006;AVGPOST=0.9994;RSQ=0.9961;ERATE=0.0004;THETA=0.0004;AC=1967;AN=2184 GT:DS:GL:BD 0.90064102 1 1 70270966 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0357;AVGPOST=0.9997;RSQ=0.9968;ERATE=0.0003;THETA=0.0006;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70270972 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9712;AVGPOST=0.9998;RSQ=0.9970;ERATE=0.0003;THETA=0.0004;AC=2121;AN=2184 GT:DS:GL:BD 0.97115386 1 1 70271169 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0056;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70271260 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9604;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70271367 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70271399 . TCA T 72 PASS INDEL;BAVGPOST=0.999;BRSQ=0.685;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5062;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70271407 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0004;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70271421 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70271442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70271523 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9244;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70271658 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0083;AVGPOST=0.9999;RSQ=0.9935;ERATE=0.0003;THETA=0.0003;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70271700 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0002;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70271750 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0128;AVGPOST=0.9999;RSQ=0.9965;ERATE=0.0003;THETA=0.0006;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70271801 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0019;AVGPOST=0.9998;RSQ=0.9439;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70271805 . GCAAGTC G 519 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0024;AVGPOST=0.9974;RSQ=0.5586;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70272028 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272078 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8435;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0686;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0003;AC=150;AN=2184 GT:DS:GL:BD 0.06868132 0 1 70272145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70272200 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272211 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0019;AVGPOST=0.9999;RSQ=0.9767;ERATE=0.0015;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70272232 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0328;AVGPOST=0.9997;RSQ=0.9970;ERATE=0.0003;THETA=0.0008;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 70272491 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0010;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272515 . GAATA G 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6801;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70272778 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70272839 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8214;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70272886 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5756;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70272969 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0051;AVGPOST=0.9991;RSQ=0.9504;ERATE=0.0003;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70272976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.881;LDAF=0.0079;AVGPOST=0.9978;RSQ=0.8876;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70273079 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8758;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70273120 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0017;AVGPOST=0.9979;RSQ=0.6184;ERATE=0.0002;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70273179 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70273479 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.789;LDAF=0.0818;AVGPOST=0.9856;RSQ=0.9342;ERATE=0.0006;THETA=0.0002;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 70273626 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0094;AVGPOST=0.9971;RSQ=0.8878;ERATE=0.0003;THETA=0.0002;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70274011 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.902;LDAF=0.0098;AVGPOST=0.9986;RSQ=0.9478;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70274358 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.461;LDAF=0.0083;AVGPOST=0.9894;RSQ=0.5135;ERATE=0.0028;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70274359 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.759;LDAF=0.0047;AVGPOST=0.9979;RSQ=0.8135;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70274441 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.830;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70274448 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.734;LDAF=0.0105;AVGPOST=0.9939;RSQ=0.7981;ERATE=0.0003;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70274475 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.1102;AVGPOST=0.9970;RSQ=0.9871;ERATE=0.0006;THETA=0.0003;AC=240;AN=2184 GT:DS:GL:BD 0.10989011 0 1 70274555 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=1.0000;RSQ=0.9982;ERATE=0.0002;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70274640 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7404;ERATE=0.0002;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70274646 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6701;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70274651 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7608;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70274660 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.913;LDAF=0.1073;AVGPOST=0.9894;RSQ=0.9619;ERATE=0.0006;THETA=0.0003;AC=233;AN=2184 GT:DS:GL:BD 0.10668498 0 1 70274734 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.986;LDAF=0.1360;AVGPOST=0.9970;RSQ=0.9903;ERATE=0.0003;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 70274773 . CCAAA C 174 PASS INDEL;BAVGPOST=0.999;BRSQ=0.940;LDAF=0.0051;AVGPOST=0.9987;RSQ=0.8863;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70274877 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.580;LDAF=0.0019;AVGPOST=0.9971;RSQ=0.3753;ERATE=0.0005;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70274938 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8272;ERATE=0.0004;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70275195 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0109;AVGPOST=0.9991;RSQ=0.9680;ERATE=0.0002;THETA=0.0005;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70275352 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.988;LDAF=0.2864;AVGPOST=0.9955;RSQ=0.9908;ERATE=0.0005;THETA=0.0002;AC=628;AN=2184 GT:DS:GL:BD 0.28754580 0 1 70275362 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.973;LDAF=0.1440;AVGPOST=0.9949;RSQ=0.9847;ERATE=0.0006;THETA=0.0006;AC=316;AN=2184 GT:DS:GL:BD 0.14468865 0 1 70275396 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0053;AVGPOST=0.9986;RSQ=0.8775;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70275422 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1349;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0003;THETA=0.0003;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 70275628 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.788;LDAF=0.0096;AVGPOST=0.9959;RSQ=0.8576;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70275633 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.4711;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70275667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9228;ERATE=0.0002;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70275679 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1348;AVGPOST=0.9997;RSQ=0.9988;ERATE=0.0002;THETA=0.0003;AC=294;AN=2184 GT:DS:GL:BD 0.13461539 0 1 70275865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1365;AVGPOST=0.9979;RSQ=0.9938;ERATE=0.0003;THETA=0.0003;AC=298;AN=2184 GT:DS:GL:BD 0.13644689 0 1 70275919 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9997;RSQ=0.9696;ERATE=0.0002;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70275972 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9378;ERATE=0.0002;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70276054 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6545;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70276070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5936;AVGPOST=0.9960;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 70276090 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70276275 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.838;LDAF=0.0090;AVGPOST=0.9965;RSQ=0.8492;ERATE=0.0003;THETA=0.0075;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70276382 . AT A 74 PASS INDEL;BAVGPOST=0.998;BRSQ=0.612;LDAF=0.0017;AVGPOST=0.9974;RSQ=0.3410;ERATE=0.0007;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70276449 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0167;AVGPOST=0.9993;RSQ=0.9863;ERATE=0.0002;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70276641 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0002;THETA=0.0034;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70276670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7753;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70276708 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0033;AVGPOST=0.9998;RSQ=0.9670;ERATE=0.0003;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70276887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.759;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5491;ERATE=0.0003;THETA=0.0037;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70276979 rs5781450 AATGTGTT A 35421 PASS INDEL;BAVGPOST=0.965;BRSQ=0.939;LDAF=0.3316;AVGPOST=0.9654;RSQ=0.9461;ERATE=0.0059;THETA=0.0007;AC=728;AN=2184 GT:DS:GL:BD 0.33333334 0 1 70277016 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.422;LDAF=0.0107;AVGPOST=0.9872;RSQ=0.5243;ERATE=0.0010;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70277109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.698;LDAF=0.0070;AVGPOST=0.9947;RSQ=0.6863;ERATE=0.0009;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70277234 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.753;LDAF=0.0034;AVGPOST=0.9969;RSQ=0.6129;ERATE=0.0006;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70277316 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0056;AVGPOST=0.9986;RSQ=0.8929;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70277319 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.924;LDAF=0.0081;AVGPOST=0.9951;RSQ=0.7689;ERATE=0.0005;THETA=0.0018;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70277323 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.547;LDAF=0.0051;AVGPOST=0.9941;RSQ=0.5795;ERATE=0.0006;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70277361 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0034;AVGPOST=0.9994;RSQ=0.9199;ERATE=0.0003;THETA=0.0010;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70277455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.768;LDAF=0.0036;AVGPOST=0.9977;RSQ=0.7677;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70277640 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70277785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0170;AVGPOST=0.9996;RSQ=0.9896;ERATE=0.0002;THETA=0.0019;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70277874 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.650;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8796;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70277971 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0023;AVGPOST=0.9975;RSQ=0.5801;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70278078 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0018;AVGPOST=0.9993;RSQ=0.8286;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70278124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0050;AVGPOST=0.9971;RSQ=0.8139;ERATE=0.0003;THETA=0.0005;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70278171 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9607;ERATE=0.0002;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70278217 rs75705283 TA T 5389 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0768;AVGPOST=0.9993;RSQ=0.9950;ERATE=0.0003;THETA=0.0007;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70278229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.823;LDAF=0.0076;AVGPOST=0.9966;RSQ=0.8375;ERATE=0.0002;THETA=0.0007;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70278237 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7354;ERATE=0.0002;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70278254 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9351;ERATE=0.0002;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70278296 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1042;AVGPOST=0.9995;RSQ=0.9974;ERATE=0.0003;THETA=0.0012;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 70278305 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0034;AVGPOST=0.9997;RSQ=0.9545;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70278432 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0767;AVGPOST=0.9992;RSQ=0.9952;ERATE=0.0003;THETA=0.0005;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 70278590 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0345;AVGPOST=0.9980;RSQ=0.9749;ERATE=0.0002;THETA=0.0003;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70278605 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.835;LDAF=0.0009;AVGPOST=0.9997;RSQ=0.8448;ERATE=0.0002;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70278768 . C CA 5923 PASS INDEL;BAVGPOST=0.998;BRSQ=0.988;LDAF=0.0773;AVGPOST=0.9988;RSQ=0.9926;ERATE=0.0004;THETA=0.0005;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70278810 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.910;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0002;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70278884 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0033;AVGPOST=0.9990;RSQ=0.9007;ERATE=0.0003;THETA=0.0019;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70278895 . TA T 157 PASS INDEL;BAVGPOST=0.989;BRSQ=0.923;LDAF=0.0812;AVGPOST=0.9884;RSQ=0.9392;ERATE=0.0015;THETA=0.0007;AC=175;AN=2184 GT:DS:GL:BD 0.08012821 0 1 70278918 rs78100402 AT A 8140 PASS INDEL;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0782;AVGPOST=0.9987;RSQ=0.9925;ERATE=0.0002;THETA=0.0005;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70278926 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.953;LDAF=0.0688;AVGPOST=0.9966;RSQ=0.9798;ERATE=0.0002;THETA=0.0009;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 70278967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.954;LDAF=0.0688;AVGPOST=0.9967;RSQ=0.9801;ERATE=0.0002;THETA=0.0008;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 70278968 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7150;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70279074 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.905;LDAF=0.0101;AVGPOST=0.9995;RSQ=0.9752;ERATE=0.0003;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70279264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0774;AVGPOST=0.9997;RSQ=0.9978;ERATE=0.0002;THETA=0.0018;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70279318 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0144;AVGPOST=0.9993;RSQ=0.9785;ERATE=0.0002;THETA=0.0017;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70279387 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.874;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6494;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70279401 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8690;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70279429 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0033;AVGPOST=0.9999;RSQ=0.9843;ERATE=0.0002;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70279462 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7559;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70279594 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70279701 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6648;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70279738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5835;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70279938 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0052;AVGPOST=0.9986;RSQ=0.9217;ERATE=0.0002;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70279953 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.818;LDAF=0.0480;AVGPOST=0.9813;RSQ=0.8347;ERATE=0.0006;THETA=0.0004;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 70280069 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0777;AVGPOST=0.9977;RSQ=0.9843;ERATE=0.0006;THETA=0.0004;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70280093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.469;LDAF=0.0133;AVGPOST=0.9875;RSQ=0.6369;ERATE=0.0005;THETA=0.0008;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70280094 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.859;LDAF=0.0080;AVGPOST=0.9982;RSQ=0.9097;ERATE=0.0002;THETA=0.0014;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70280149 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0101;AVGPOST=0.9986;RSQ=0.9416;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70280263 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6277;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70280315 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.980;LDAF=0.0759;AVGPOST=0.9989;RSQ=0.9923;ERATE=0.0004;THETA=0.0004;AC=165;AN=2184 GT:DS:GL:BD 0.07554945 0 1 70280347 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0756;AVGPOST=0.9991;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70280390 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.987;LDAF=0.0756;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0011;AC=164;AN=2184 GT:DS:GL:BD 0.07509158 0 1 70280409 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0771;AVGPOST=0.9992;RSQ=0.9947;ERATE=0.0004;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70280494 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9075;ERATE=0.0003;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70280561 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0767;AVGPOST=0.9996;RSQ=0.9975;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70280563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6208;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70280577 . T TA 1102 PASS INDEL;BAVGPOST=0.972;BRSQ=0.758;LDAF=0.0653;AVGPOST=0.9753;RSQ=0.8491;ERATE=0.0031;THETA=0.0003;AC=132;AN=2184 GT:DS:GL:BD 0.06043956 0 1 70280677 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.948;LDAF=0.0773;AVGPOST=0.9981;RSQ=0.9893;ERATE=0.0002;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70280771 . A AG 136 PASS INDEL;BAVGPOST=0.992;BRSQ=0.549;LDAF=0.0455;AVGPOST=0.9367;RSQ=0.4452;ERATE=0.0032;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70280866 rs58874270 AG A 5244 PASS INDEL;BAVGPOST=0.980;BRSQ=0.954;LDAF=0.2041;AVGPOST=0.9757;RSQ=0.9451;ERATE=0.0021;THETA=0.0004;AC=442;AN=2184 GT:DS:GL:BD 0.20238096 0 1 70280867 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.972;LDAF=0.6790;AVGPOST=0.9639;RSQ=0.9371;ERATE=0.0024;THETA=0.0008;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 70280872 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0768;AVGPOST=0.9998;RSQ=0.9985;ERATE=0.0002;THETA=0.0003;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70280988 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1812;AVGPOST=0.9991;RSQ=0.9974;ERATE=0.0003;THETA=0.0006;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 70281359 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0769;AVGPOST=0.9995;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70281401 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0002;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70281432 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0614;AVGPOST=0.9992;RSQ=0.9958;ERATE=0.0002;THETA=0.0005;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 70281475 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0769;AVGPOST=0.9994;RSQ=0.9959;ERATE=0.0003;THETA=0.0002;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70281533 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.839;LDAF=0.0033;AVGPOST=0.9974;RSQ=0.7180;ERATE=0.0003;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70281587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5590;ERATE=0.0002;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70281655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0128;AVGPOST=0.9995;RSQ=0.9855;ERATE=0.0002;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70281693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.975;LDAF=0.0774;AVGPOST=0.9982;RSQ=0.9896;ERATE=0.0003;THETA=0.0006;AC=167;AN=2184 GT:DS:GL:BD 0.07646520 0 1 70281771 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.915;LDAF=0.1048;AVGPOST=0.9926;RSQ=0.9695;ERATE=0.0009;THETA=0.0006;AC=228;AN=2184 GT:DS:GL:BD 0.10439561 0 1 70281912 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.727;LDAF=0.0030;AVGPOST=0.9966;RSQ=0.5511;ERATE=0.0005;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70281920 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0783;AVGPOST=0.9969;RSQ=0.9833;ERATE=0.0005;THETA=0.0005;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70281965 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7565;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70282188 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0084;AVGPOST=0.9991;RSQ=0.9522;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70282217 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5201;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70282242 . AGC A 8562 PASS INDEL;BAVGPOST=0.994;BRSQ=0.957;LDAF=0.0765;AVGPOST=0.9986;RSQ=0.9916;ERATE=0.0003;THETA=0.0006;AC=166;AN=2184 GT:DS:GL:BD 0.07600733 0 1 70282357 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.854;LDAF=0.0024;AVGPOST=0.9997;RSQ=0.9460;ERATE=0.0002;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70282368 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.775;LDAF=0.0039;AVGPOST=0.9965;RSQ=0.6420;ERATE=0.0006;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70282433 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.946;LDAF=0.0353;AVGPOST=0.9965;RSQ=0.9622;ERATE=0.0002;THETA=0.0011;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70282438 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5897;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70282457 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2282;AVGPOST=0.9946;RSQ=0.9887;ERATE=0.0005;THETA=0.0004;AC=496;AN=2184 GT:DS:GL:BD 0.22710623 0 1 70282526 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.794;LDAF=0.9324;AVGPOST=0.9676;RSQ=0.8042;ERATE=0.0031;THETA=0.0004;AC=2050;AN=2184 GT:DS:GL:BD 0.93864471 1 1 70282611 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.732;LDAF=0.0021;AVGPOST=0.9989;RSQ=0.7842;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70282799 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1167;AVGPOST=0.9985;RSQ=0.9945;ERATE=0.0003;THETA=0.0004;AC=256;AN=2184 GT:DS:GL:BD 0.11721612 0 1 70282801 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0777;AVGPOST=0.9986;RSQ=0.9907;ERATE=0.0006;THETA=0.0004;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70282850 rs57341937 AT A 72 PASS INDEL;BAVGPOST=0.999;BRSQ=0.720;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7408;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70282853 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.414;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6399;ERATE=0.0004;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70282875 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.575;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6356;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70282879 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0147;AVGPOST=0.9996;RSQ=0.9894;ERATE=0.0003;THETA=0.0008;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70282931 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0776;AVGPOST=0.9991;RSQ=0.9941;ERATE=0.0004;THETA=0.0008;AC=168;AN=2184 GT:DS:GL:BD 0.07692308 0 1 70282995 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0144;AVGPOST=0.9996;RSQ=0.9870;ERATE=0.0003;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70282996 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0065;AVGPOST=0.9989;RSQ=0.9209;ERATE=0.0003;THETA=0.0013;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70283035 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2098;AVGPOST=0.9965;RSQ=0.9923;ERATE=0.0006;THETA=0.0009;AC=457;AN=2184 GT:DS:GL:BD 0.20924908 0 1 70283116 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0071;AVGPOST=0.9980;RSQ=0.9015;ERATE=0.0003;THETA=0.0029;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70283248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7084;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70283312 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.656;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.6231;ERATE=0.0003;THETA=0.0020;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70283349 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8474;ERATE=0.0003;THETA=0.0013;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70283351 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70283449 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0046;AVGPOST=1.0000;RSQ=0.9952;ERATE=0.0003;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70283529 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0093;AVGPOST=0.9994;RSQ=0.9713;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70283544 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.983;LDAF=0.1446;AVGPOST=0.9940;RSQ=0.9829;ERATE=0.0003;THETA=0.0004;AC=315;AN=2184 GT:DS:GL:BD 0.14423077 0 1 70283545 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0024;AVGPOST=0.9990;RSQ=0.8635;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70283759 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0040;AVGPOST=0.9994;RSQ=0.9357;ERATE=0.0003;THETA=0.0011;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70283760 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7798;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70283761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2254;AVGPOST=0.9993;RSQ=0.9985;ERATE=0.0003;THETA=0.0005;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 70283980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9693;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70284055 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284124 . T TG 20 PASS INDEL;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6464;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284133 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2082;AVGPOST=0.9987;RSQ=0.9970;ERATE=0.0005;THETA=0.0004;AC=454;AN=2184 GT:DS:GL:BD 0.20787546 0 1 70284251 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0013;AVGPOST=0.9986;RSQ=0.6097;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70284263 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.979;LDAF=0.3508;AVGPOST=0.9930;RSQ=0.9897;ERATE=0.0010;THETA=0.0003;AC=768;AN=2184 GT:DS:GL:BD 0.35164836 0 1 70284525 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284598 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.916;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7791;ERATE=0.0004;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70284682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9830;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70284894 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.7976;AVGPOST=0.9959;RSQ=0.9898;ERATE=0.0006;THETA=0.0004;AC=1743;AN=2184 GT:DS:GL:BD 0.79807693 1 1 70284920 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.602;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4593;ERATE=0.0005;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284921 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.4932;ERATE=0.0005;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284929 . C CT 21 PASS INDEL;BAVGPOST=1.000;BRSQ=0.776;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5588;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70284974 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.5111;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70285036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.789;LDAF=0.0096;AVGPOST=0.9942;RSQ=0.7654;ERATE=0.0008;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70285058 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.990;LDAF=0.3518;AVGPOST=0.9895;RSQ=0.9839;ERATE=0.0024;THETA=0.0003;AC=769;AN=2184 GT:DS:GL:BD 0.35210621 0 1 70285162 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.988;LDAF=0.7916;AVGPOST=0.9916;RSQ=0.9796;ERATE=0.0013;THETA=0.0002;AC=1734;AN=2184 GT:DS:GL:BD 0.79395604 1 1 70285298 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2318;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0003;THETA=0.0004;AC=506;AN=2184 GT:DS:GL:BD 0.23168498 0 1 70285351 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0020;AVGPOST=0.9984;RSQ=0.6383;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70285467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.950;LDAF=0.0067;AVGPOST=0.9985;RSQ=0.9212;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70285570 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0013;AVGPOST=0.9985;RSQ=0.5954;ERATE=0.0005;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70285624 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0020;AVGPOST=0.9985;RSQ=0.7287;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70285723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0038;AVGPOST=0.9994;RSQ=0.9279;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70285784 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.898;LDAF=0.0487;AVGPOST=0.9893;RSQ=0.9151;ERATE=0.0003;THETA=0.0002;AC=101;AN=2184 GT:DS:GL:BD 0.04624542 0 1 70285807 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9033;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70285811 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2311;AVGPOST=0.9987;RSQ=0.9974;ERATE=0.0006;THETA=0.0003;AC=505;AN=2184 GT:DS:GL:BD 0.23122710 0 1 70285847 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.785;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6377;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70285876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9107;ERATE=0.0003;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70285910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6960;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70285932 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6140;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70285965 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.986;LDAF=0.0451;AVGPOST=0.9991;RSQ=0.9918;ERATE=0.0003;THETA=0.0002;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 70285978 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5516;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70286050 . CT C 81 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8917;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70286097 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2250;AVGPOST=0.9989;RSQ=0.9979;ERATE=0.0003;THETA=0.0004;AC=492;AN=2184 GT:DS:GL:BD 0.22527473 0 1 70286107 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0106;AVGPOST=0.9984;RSQ=0.9498;ERATE=0.0003;THETA=0.0003;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70286163 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0013;AVGPOST=0.9996;RSQ=0.8818;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70286164 . T TA 17 PASS INDEL;BAVGPOST=1.000;BRSQ=0.784;LDAF=0.0020;AVGPOST=0.9977;RSQ=0.5324;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70286240 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0043;AVGPOST=0.9994;RSQ=0.9416;ERATE=0.0003;THETA=0.0002;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70286344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.917;LDAF=0.0061;AVGPOST=0.9983;RSQ=0.8941;ERATE=0.0004;THETA=0.0006;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70286418 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0064;AVGPOST=0.9991;RSQ=0.9475;ERATE=0.0004;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70286419 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0106;AVGPOST=0.9998;RSQ=0.9925;ERATE=0.0003;THETA=0.0002;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70286485 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.2344;AVGPOST=0.9992;RSQ=0.9985;ERATE=0.0004;THETA=0.0002;AC=512;AN=2184 GT:DS:GL:BD 0.23443224 0 1 70286586 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0063;AVGPOST=0.9968;RSQ=0.8266;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70286716 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.575;LDAF=0.0032;AVGPOST=0.9968;RSQ=0.6478;ERATE=0.0005;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70286738 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7238;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70286754 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.674;LDAF=0.0013;AVGPOST=0.9982;RSQ=0.4417;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70286793 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7055;ERATE=0.0008;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70286838 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.7383;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70286869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5029;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70286925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0032;AVGPOST=0.9990;RSQ=0.8804;ERATE=0.0010;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70286926 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2285;AVGPOST=0.9994;RSQ=0.9989;ERATE=0.0003;THETA=0.0011;AC=499;AN=2184 GT:DS:GL:BD 0.22847985 0 1 70286930 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0037;AVGPOST=0.9998;RSQ=0.9767;ERATE=0.0004;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70286957 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0977;AVGPOST=0.9993;RSQ=0.9968;ERATE=0.0003;THETA=0.0004;AC=213;AN=2184 GT:DS:GL:BD 0.09752747 0 1 70286993 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70287054 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.7051;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70287057 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7993;AVGPOST=0.9986;RSQ=0.9962;ERATE=0.0003;THETA=0.0005;AC=1745;AN=2184 GT:DS:GL:BD 0.79899269 1 1 70287254 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9265;ERATE=0.0004;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70287376 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6495;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70287449 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.831;LDAF=0.0021;AVGPOST=0.9986;RSQ=0.7781;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70287454 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9714;ERATE=0.0003;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70287515 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.2365;AVGPOST=0.9973;RSQ=0.9958;ERATE=0.0004;THETA=0.0004;AC=517;AN=2184 GT:DS:GL:BD 0.23672161 0 1 70287559 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9546;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70287667 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1668;AVGPOST=0.9949;RSQ=0.9885;ERATE=0.0005;THETA=0.0003;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 70287670 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70287784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7997;AVGPOST=0.9984;RSQ=0.9960;ERATE=0.0005;THETA=0.0003;AC=1747;AN=2184 GT:DS:GL:BD 0.79990840 1 1 70287815 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70288069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0061;AVGPOST=0.9978;RSQ=0.8752;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70288388 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.985;LDAF=0.1508;AVGPOST=0.9936;RSQ=0.9866;ERATE=0.0004;THETA=0.0005;AC=326;AN=2184 GT:DS:GL:BD 0.14926741 0 1 70288413 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0956;AVGPOST=0.9968;RSQ=0.9859;ERATE=0.0004;THETA=0.0002;AC=209;AN=2184 GT:DS:GL:BD 0.09569597 0 1 70288423 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.4325;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70288482 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5703;ERATE=0.0004;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70288544 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1932;AVGPOST=0.9959;RSQ=0.9901;ERATE=0.0006;THETA=0.0037;AC=420;AN=2184 GT:DS:GL:BD 0.19230770 0 1 70288546 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0265;AVGPOST=0.9987;RSQ=0.9835;ERATE=0.0003;THETA=0.0025;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70288597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1911;AVGPOST=0.9976;RSQ=0.9939;ERATE=0.0005;THETA=0.0001;AC=418;AN=2184 GT:DS:GL:BD 0.19139194 0 1 70288852 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70288853 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.938;LDAF=0.0121;AVGPOST=0.9984;RSQ=0.9385;ERATE=0.0003;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70288976 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9009;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70289026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70289031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70289196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9651;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70289198 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7571;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70289202 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9871;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70289210 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9994;RSQ=0.6310;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70289317 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.8123;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70289374 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1500;AVGPOST=0.9983;RSQ=0.9945;ERATE=0.0004;THETA=0.0005;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 70289385 rs111873330 TAGAC T 20774 PASS INDEL;BAVGPOST=0.997;BRSQ=0.992;LDAF=0.1971;AVGPOST=0.9971;RSQ=0.9919;ERATE=0.0007;THETA=0.0005;AC=430;AN=2184 GT:DS:GL:BD 0.19688645 0 1 70289434 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.950;LDAF=0.0267;AVGPOST=0.9976;RSQ=0.9655;ERATE=0.0004;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70289501 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.2560;AVGPOST=0.9984;RSQ=0.9968;ERATE=0.0003;THETA=0.0027;AC=559;AN=2184 GT:DS:GL:BD 0.25595239 0 1 70289513 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8505;ERATE=0.0005;THETA=0.0001;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70289535 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8731;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70289550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70289585 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8916;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70289704 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0347;AVGPOST=0.9994;RSQ=0.9934;ERATE=0.0003;THETA=0.0005;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70289710 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.787;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7896;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70289740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9004;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70289741 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6738;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0004;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 70289769 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.826;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3501;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70289854 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2016;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0005;THETA=0.0002;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 70289896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9230;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70289925 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5354;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70289926 rs79219306 G GT 13961 PASS INDEL;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1960;AVGPOST=0.9982;RSQ=0.9948;ERATE=0.0006;THETA=0.0002;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70289952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0032;AVGPOST=0.9997;RSQ=0.9533;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70290025 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.715;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7976;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70290085 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.938;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70290099 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7151;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70290368 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9093;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70290369 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70290437 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0066;AVGPOST=0.9986;RSQ=0.9123;ERATE=0.0005;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70290465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.6751;AVGPOST=0.9927;RSQ=0.9899;ERATE=0.0027;THETA=0.0020;AC=1476;AN=2184 GT:DS:GL:BD 0.67582417 1 1 70290713 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.1961;AVGPOST=0.9970;RSQ=0.9919;ERATE=0.0007;THETA=0.0003;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70290773 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=1.000;LDAF=0.1957;AVGPOST=0.9997;RSQ=0.9990;ERATE=0.0003;THETA=0.0006;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70290847 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.622;LDAF=0.0017;AVGPOST=0.9988;RSQ=0.6996;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70290888 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.696;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5204;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70290891 . A AT 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.779;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6280;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70290941 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9299;ERATE=0.0004;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70291023 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6461;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70291143 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0025;AVGPOST=0.9992;RSQ=0.8728;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70291178 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0334;AVGPOST=0.9996;RSQ=0.9951;ERATE=0.0003;THETA=0.0003;AC=73;AN=2184 GT:DS:GL:BD 0.03342491 0 1 70291228 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.818;LDAF=0.0085;AVGPOST=0.9975;RSQ=0.8817;ERATE=0.0004;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70291452 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.2299;AVGPOST=0.9957;RSQ=0.9906;ERATE=0.0005;THETA=0.0002;AC=504;AN=2184 GT:DS:GL:BD 0.23076923 0 1 70291487 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.5227;AVGPOST=0.9925;RSQ=0.9900;ERATE=0.0012;THETA=0.0002;AC=1145;AN=2184 GT:DS:GL:BD 0.52426738 1 1 70291489 . G GC 419 PASS INDEL;BAVGPOST=0.998;BRSQ=0.779;LDAF=0.0056;AVGPOST=0.9984;RSQ=0.8672;ERATE=0.0005;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70291531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.811;LDAF=0.0048;AVGPOST=0.9983;RSQ=0.8461;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70291538 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1132;AVGPOST=0.9964;RSQ=0.9849;ERATE=0.0007;THETA=0.0007;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 70291546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0125;AVGPOST=0.9992;RSQ=0.9694;ERATE=0.0004;THETA=0.0003;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70291659 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0028;AVGPOST=0.9998;RSQ=0.9614;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70291891 . TCTG T 311 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0020;AVGPOST=0.9996;RSQ=0.9395;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70291901 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0058;AVGPOST=0.9994;RSQ=0.9657;ERATE=0.0003;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70292096 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7044;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292113 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292117 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.4591;ERATE=0.0003;THETA=0.0015;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292145 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0088;AVGPOST=0.9983;RSQ=0.9374;ERATE=0.0003;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70292196 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1648;AVGPOST=0.9972;RSQ=0.9920;ERATE=0.0003;THETA=0.0007;AC=358;AN=2184 GT:DS:GL:BD 0.16391942 0 1 70292236 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0900;AVGPOST=0.9980;RSQ=0.9915;ERATE=0.0005;THETA=0.0002;AC=196;AN=2184 GT:DS:GL:BD 0.08974359 0 1 70292246 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0074;AVGPOST=0.9980;RSQ=0.9032;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70292309 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.819;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.8427;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70292310 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.875;LDAF=0.3995;AVGPOST=0.9245;RSQ=0.8550;ERATE=0.0412;THETA=0.0003;AC=871;AN=2184 GT:DS:GL:BD 0.39880952 0 1 70292452 . AC A 63 PASS INDEL;BAVGPOST=0.990;BRSQ=0.540;LDAF=0.0210;AVGPOST=0.9701;RSQ=0.4439;ERATE=0.0049;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70292463 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.960;BRSQ=0.870;LDAF=0.2371;AVGPOST=0.9156;RSQ=0.7797;ERATE=0.0266;THETA=0.0004;AC=488;AN=2184 GT:DS:GL:BD 0.22344323 0 1 70292479 . A AC 1923 PASS INDEL;BAVGPOST=0.983;BRSQ=0.768;LDAF=0.0641;AVGPOST=0.9414;RSQ=0.6286;ERATE=0.0069;THETA=0.0005;AC=99;AN=2184 GT:DS:GL:BD 0.04532967 0 1 70292503 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.914;BRSQ=0.536;LDAF=0.0995;AVGPOST=0.9170;RSQ=0.6925;ERATE=0.0043;THETA=0.0009;AC=183;AN=2184 GT:DS:GL:BD 0.08379121 0 1 70292518 . A AC 324 PASS INDEL;BAVGPOST=0.959;BRSQ=0.463;LDAF=0.0883;AVGPOST=0.8830;RSQ=0.4288;ERATE=0.0151;THETA=0.0003;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70292542 . A AG 329 PASS INDEL;BAVGPOST=0.908;BRSQ=0.295;LDAF=0.1260;AVGPOST=0.8227;RSQ=0.3464;ERATE=0.0242;THETA=0.0004;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 70292578 . A AC 5650 PASS INDEL;BAVGPOST=0.838;BRSQ=0.542;LDAF=0.2824;AVGPOST=0.7499;RSQ=0.4576;ERATE=0.0661;THETA=0.0007;AC=446;AN=2184 GT:DS:GL:BD 0.20421246 0 1 70292581 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0037;AVGPOST=0.9992;RSQ=0.9156;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70292690 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1596;AVGPOST=0.9967;RSQ=0.9913;ERATE=0.0006;THETA=0.0004;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 70292708 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0039;AVGPOST=0.9989;RSQ=0.8836;ERATE=0.0003;THETA=0.0007;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70292735 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7109;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292858 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6589;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292891 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.780;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4807;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70292961 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8325;ERATE=0.0006;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70292972 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0036;AVGPOST=0.9968;RSQ=0.6571;ERATE=0.0005;THETA=0.0001;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70293023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.3955;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70293128 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6862;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70293208 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0017;AVGPOST=0.9987;RSQ=0.6969;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70293275 . A AT 743 PASS INDEL;BAVGPOST=0.998;BRSQ=0.835;LDAF=0.0068;AVGPOST=0.9963;RSQ=0.7794;ERATE=0.0009;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70293293 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7516;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70293294 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9739;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70293325 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.900;LDAF=0.0032;AVGPOST=0.9982;RSQ=0.8183;ERATE=0.0003;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70293386 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.580;LDAF=0.0027;AVGPOST=0.9986;RSQ=0.7664;ERATE=0.0006;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70293748 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0035;AVGPOST=0.9981;RSQ=0.7796;ERATE=0.0003;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70293779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6328;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70293830 . T TA 172 PASS INDEL;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0013;AVGPOST=0.9984;RSQ=0.4431;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70293892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5903;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70293934 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.815;LDAF=0.0054;AVGPOST=0.9976;RSQ=0.8122;ERATE=0.0005;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70293994 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0033;AVGPOST=0.9982;RSQ=0.7449;ERATE=0.0005;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70294051 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.864;LDAF=0.0090;AVGPOST=0.9971;RSQ=0.8896;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70294106 . TTC T 59 PASS INDEL;BAVGPOST=1.000;BRSQ=0.783;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7641;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70294342 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6900;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70294354 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0275;AVGPOST=0.9980;RSQ=0.9739;ERATE=0.0004;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70294469 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0128;AVGPOST=0.9985;RSQ=0.9501;ERATE=0.0004;THETA=0.0005;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70294478 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0094;AVGPOST=0.9985;RSQ=0.9310;ERATE=0.0005;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70294503 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0298;AVGPOST=0.9987;RSQ=0.9802;ERATE=0.0005;THETA=0.0006;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 70294550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0042;AVGPOST=0.9949;RSQ=0.5111;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70294751 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9988;RSQ=0.6318;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70294758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.755;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7514;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70294779 . GA G 126 PASS INDEL;BAVGPOST=0.993;BRSQ=0.834;LDAF=0.0248;AVGPOST=0.9900;RSQ=0.8450;ERATE=0.0006;THETA=0.0006;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70294779 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0255;AVGPOST=0.9955;RSQ=0.9300;ERATE=0.0006;THETA=0.0004;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70294804 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.626;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6457;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70294907 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.484;LDAF=0.0102;AVGPOST=0.9863;RSQ=0.4656;ERATE=0.0032;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70294990 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.886;LDAF=0.0153;AVGPOST=0.9952;RSQ=0.8972;ERATE=0.0003;THETA=0.0003;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70295004 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.934;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8165;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70295108 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.985;LDAF=0.5448;AVGPOST=0.9895;RSQ=0.9837;ERATE=0.0021;THETA=0.0003;AC=1195;AN=2184 GT:DS:GL:BD 0.54716116 1 1 70295187 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0017;AVGPOST=0.9990;RSQ=0.7705;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70295304 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0121;AVGPOST=0.9996;RSQ=0.9857;ERATE=0.0003;THETA=0.0002;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70295315 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0083;AVGPOST=0.9993;RSQ=0.9598;ERATE=0.0003;THETA=0.0010;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70295399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8710;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70295408 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0024;AVGPOST=0.9987;RSQ=0.7459;ERATE=0.0006;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70295425 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70295473 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.841;LDAF=0.0036;AVGPOST=0.9989;RSQ=0.8842;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70295521 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.771;LDAF=0.0044;AVGPOST=0.9970;RSQ=0.7293;ERATE=0.0007;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70295557 . CAT C 165 PASS INDEL;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0021;AVGPOST=0.9967;RSQ=0.4124;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70295599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.822;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6094;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70295726 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6831;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70295811 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.996;LDAF=0.0562;AVGPOST=0.9966;RSQ=0.9783;ERATE=0.0003;THETA=0.0004;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 70296078 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7452;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70296132 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5506;AVGPOST=0.9953;RSQ=0.9914;ERATE=0.0005;THETA=0.0003;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 70296454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5507;AVGPOST=0.9970;RSQ=0.9945;ERATE=0.0006;THETA=0.0008;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 70296479 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.956;LDAF=0.0117;AVGPOST=0.9966;RSQ=0.8828;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70296496 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.898;LDAF=0.0396;AVGPOST=0.9971;RSQ=0.9682;ERATE=0.0007;THETA=0.0009;AC=85;AN=2184 GT:DS:GL:BD 0.03891942 0 1 70296558 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0035;AVGPOST=0.9955;RSQ=0.4634;ERATE=0.0007;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70296563 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.352;LDAF=0.0055;AVGPOST=0.9926;RSQ=0.4688;ERATE=0.0010;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70296675 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.924;BRSQ=0.848;LDAF=0.3768;AVGPOST=0.8698;RSQ=0.7943;ERATE=0.0437;THETA=0.0007;AC=811;AN=2184 GT:DS:GL:BD 0.37133700 0 1 70296707 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.833;LDAF=0.4323;AVGPOST=0.8500;RSQ=0.7706;ERATE=0.0451;THETA=0.0006;AC=956;AN=2184 GT:DS:GL:BD 0.43772894 0 1 70296721 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0368;AVGPOST=0.9992;RSQ=0.9917;ERATE=0.0003;THETA=0.0005;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70296907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0171;AVGPOST=0.9997;RSQ=0.9912;ERATE=0.0003;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70296971 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.969;LDAF=0.0022;AVGPOST=0.9990;RSQ=0.8162;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70297022 . T TACACC 503 PASS INDEL;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7871;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70297071 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0366;AVGPOST=0.9988;RSQ=0.9865;ERATE=0.0003;THETA=0.0002;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70297340 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5507;AVGPOST=0.9976;RSQ=0.9958;ERATE=0.0007;THETA=0.0003;AC=1203;AN=2184 GT:DS:GL:BD 0.55082417 1 1 70297348 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6313;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70297499 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0038;AVGPOST=0.9992;RSQ=0.9112;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70297520 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0181;AVGPOST=0.9979;RSQ=0.9542;ERATE=0.0003;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70297650 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.977;LDAF=0.0377;AVGPOST=0.9984;RSQ=0.9821;ERATE=0.0003;THETA=0.0029;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70297662 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.941;LDAF=0.0042;AVGPOST=0.9995;RSQ=0.9457;ERATE=0.0004;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70297741 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5934;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=1296;AN=2184 GT:DS:GL:BD 0.59340662 1 1 70297804 . G GC 167 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.6443;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70297937 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9993;RSQ=0.8468;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70297982 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8326;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70297997 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6347;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70298110 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0045;AVGPOST=0.9998;RSQ=0.9764;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70298159 . G GA 82 PASS INDEL;BAVGPOST=0.999;BRSQ=0.773;LDAF=0.0030;AVGPOST=0.9976;RSQ=0.7059;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70298262 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6818;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70298545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70298781 . AAGAG A 776 PASS INDEL;BAVGPOST=0.998;BRSQ=0.885;LDAF=0.0107;AVGPOST=0.9955;RSQ=0.8328;ERATE=0.0003;THETA=0.0003;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70298883 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0057;AVGPOST=0.9994;RSQ=0.9539;ERATE=0.0003;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70298891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8400;ERATE=0.0003;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70298952 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0126;AVGPOST=0.9994;RSQ=0.9786;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70299002 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6161;AVGPOST=0.9986;RSQ=0.9977;ERATE=0.0003;THETA=0.0003;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 70299023 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0431;AVGPOST=0.9992;RSQ=0.9908;ERATE=0.0003;THETA=0.0003;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 70299047 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6159;AVGPOST=0.9990;RSQ=0.9982;ERATE=0.0004;THETA=0.0003;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 70299062 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0041;AVGPOST=0.9981;RSQ=0.8329;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70299149 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0044;AVGPOST=0.9991;RSQ=0.9277;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70299211 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5993;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70299226 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.6308;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70299252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7213;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70299283 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.6776;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70299336 . T TC 18 PASS INDEL;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5722;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70299502 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0029;AVGPOST=0.9997;RSQ=0.9561;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70299543 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0054;AVGPOST=0.9994;RSQ=0.9507;ERATE=0.0003;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70299563 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0014;AVGPOST=0.9992;RSQ=0.7690;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70299592 . AAC A 1232 PASS INDEL;BAVGPOST=0.998;BRSQ=0.918;LDAF=0.0123;AVGPOST=0.9996;RSQ=0.9839;ERATE=0.0003;THETA=0.0004;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70299653 . CT C 2923 PASS INDEL;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0416;AVGPOST=0.9980;RSQ=0.9784;ERATE=0.0005;THETA=0.0002;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 70299687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6398;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70299721 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0124;AVGPOST=0.9998;RSQ=0.9928;ERATE=0.0003;THETA=0.0002;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70299747 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.970;LDAF=0.0327;AVGPOST=0.9944;RSQ=0.9319;ERATE=0.0007;THETA=0.0002;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70299859 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7842;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70299884 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.804;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5598;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70300001 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9995;RSQ=0.9400;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70300024 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0016;AVGPOST=0.9991;RSQ=0.7672;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70300029 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1297;AVGPOST=0.9958;RSQ=0.9881;ERATE=0.0005;THETA=0.0005;AC=281;AN=2184 GT:DS:GL:BD 0.12866300 0 1 70300082 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6159;AVGPOST=0.9989;RSQ=0.9981;ERATE=0.0005;THETA=0.0002;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 70300142 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.745;LDAF=0.0030;AVGPOST=0.9981;RSQ=0.7660;ERATE=0.0005;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70300241 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.872;LDAF=0.0051;AVGPOST=0.9984;RSQ=0.8698;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70300261 . GGCTCAC G 283 PASS INDEL;BAVGPOST=0.999;BRSQ=0.818;LDAF=0.0021;AVGPOST=0.9985;RSQ=0.6939;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70300278 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4808;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70300284 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6139;AVGPOST=0.9950;RSQ=0.9918;ERATE=0.0009;THETA=0.0003;AC=1343;AN=2184 GT:DS:GL:BD 0.61492676 1 1 70300291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6157;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0005;THETA=0.0003;AC=1345;AN=2184 GT:DS:GL:BD 0.61584246 1 1 70300517 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6159;AVGPOST=0.9967;RSQ=0.9951;ERATE=0.0006;THETA=0.0003;AC=1347;AN=2184 GT:DS:GL:BD 0.61675823 1 1 70300575 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6176;AVGPOST=0.9962;RSQ=0.9947;ERATE=0.0003;THETA=0.0006;AC=1349;AN=2184 GT:DS:GL:BD 0.61767399 1 1 70300581 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0431;AVGPOST=0.9996;RSQ=0.9953;ERATE=0.0003;THETA=0.0004;AC=94;AN=2184 GT:DS:GL:BD 0.04304029 0 1 70301251 . AC A 37 PASS INDEL;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4447;ERATE=0.0006;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70301322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0122;AVGPOST=0.9982;RSQ=0.9499;ERATE=0.0003;THETA=0.0002;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70301333 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8455;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70301381 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1188;AVGPOST=0.9996;RSQ=0.9982;ERATE=0.0003;THETA=0.0005;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 70301471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9789;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70301481 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.8190;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70301686 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8410;ERATE=0.0003;THETA=0.0001;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70301695 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0033;AVGPOST=0.9993;RSQ=0.9173;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70301720 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9420;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70301773 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6188;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70301809 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.884;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70301868 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0394;AVGPOST=0.9995;RSQ=0.9942;ERATE=0.0003;THETA=0.0002;AC=86;AN=2184 GT:DS:GL:BD 0.03937729 0 1 70301932 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.874;LDAF=0.0155;AVGPOST=0.9948;RSQ=0.8621;ERATE=0.0003;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70301958 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0077;AVGPOST=0.9991;RSQ=0.9492;ERATE=0.0003;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70301968 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6931;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70302129 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4741;AVGPOST=0.9984;RSQ=0.9974;ERATE=0.0005;THETA=0.0003;AC=1034;AN=2184 GT:DS:GL:BD 0.47344321 0 1 70302201 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1422;AVGPOST=0.9992;RSQ=0.9974;ERATE=0.0003;THETA=0.0002;AC=311;AN=2184 GT:DS:GL:BD 0.14239927 0 1 70302216 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0031;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70302333 . A ATT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0019;AVGPOST=0.9982;RSQ=0.5850;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70302404 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9990;RSQ=0.6276;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70302418 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9766;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70302434 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.6160;AVGPOST=0.9975;RSQ=0.9957;ERATE=0.0006;THETA=0.0003;AC=1344;AN=2184 GT:DS:GL:BD 0.61538464 1 1 70302609 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70302631 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70302658 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0013;AVGPOST=0.9990;RSQ=0.6702;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70302698 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.990;LDAF=0.1296;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0004;THETA=0.0002;AC=284;AN=2184 GT:DS:GL:BD 0.13003664 0 1 70302747 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8551;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70302757 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8498;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70302822 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.0952;AVGPOST=0.9985;RSQ=0.9932;ERATE=0.0004;THETA=0.0002;AC=208;AN=2184 GT:DS:GL:BD 0.09523810 0 1 70303069 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8148;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70303317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0062;AVGPOST=0.9980;RSQ=0.8598;ERATE=0.0006;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70303443 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.845;LDAF=0.0053;AVGPOST=0.9976;RSQ=0.8247;ERATE=0.0003;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70303473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0019;AVGPOST=0.9988;RSQ=0.7455;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70303484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70303573 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1012;AVGPOST=0.9983;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=220;AN=2184 GT:DS:GL:BD 0.10073260 0 1 70303635 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1158;AVGPOST=0.9994;RSQ=0.9976;ERATE=0.0003;THETA=0.0002;AC=252;AN=2184 GT:DS:GL:BD 0.11538462 0 1 70303746 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0027;AVGPOST=0.9999;RSQ=0.9841;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70303769 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9997;RSQ=0.9632;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70303771 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0038;AVGPOST=0.9995;RSQ=0.9412;ERATE=0.0003;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70303772 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.921;LDAF=0.2129;AVGPOST=0.9723;RSQ=0.9406;ERATE=0.0027;THETA=0.0073;AC=469;AN=2184 GT:DS:GL:BD 0.21474358 0 1 70303791 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.2636;AVGPOST=0.9955;RSQ=0.9905;ERATE=0.0004;THETA=0.0003;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 70303861 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.973;LDAF=0.2636;AVGPOST=0.9950;RSQ=0.9891;ERATE=0.0006;THETA=0.0069;AC=578;AN=2184 GT:DS:GL:BD 0.26465201 0 1 70303866 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2647;AVGPOST=0.9950;RSQ=0.9897;ERATE=0.0007;THETA=0.0088;AC=579;AN=2184 GT:DS:GL:BD 0.26510990 0 1 70303962 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.969;LDAF=0.2633;AVGPOST=0.9901;RSQ=0.9814;ERATE=0.0006;THETA=0.0105;AC=575;AN=2184 GT:DS:GL:BD 0.26327839 0 1 70304093 rs77872498 C CTA 18559 PASS INDEL;BAVGPOST=0.956;BRSQ=0.894;LDAF=0.2517;AVGPOST=0.9687;RSQ=0.9413;ERATE=0.0004;THETA=0.0009;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 70304117 . A AT 1571 PASS INDEL;BAVGPOST=0.940;BRSQ=0.851;LDAF=0.2345;AVGPOST=0.9399;RSQ=0.8807;ERATE=0.0024;THETA=0.0083;AC=534;AN=2184 GT:DS:GL:BD 0.24450549 0 1 70304121 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0015;AVGPOST=0.9995;RSQ=0.8587;ERATE=0.0003;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70304322 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.817;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3879;ERATE=0.0004;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70304325 . C CT 272 PASS INDEL;BAVGPOST=0.994;BRSQ=0.763;LDAF=0.0158;AVGPOST=0.9815;RSQ=0.5809;ERATE=0.0037;THETA=0.0054;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70304340 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.939;LDAF=0.2406;AVGPOST=0.9795;RSQ=0.9573;ERATE=0.0008;THETA=0.0063;AC=521;AN=2184 GT:DS:GL:BD 0.23855311 0 1 70304411 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.937;LDAF=0.2581;AVGPOST=0.9732;RSQ=0.9456;ERATE=0.0024;THETA=0.0047;AC=562;AN=2184 GT:DS:GL:BD 0.25732601 0 1 70304423 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.830;LDAF=0.0104;AVGPOST=0.9936;RSQ=0.7388;ERATE=0.0004;THETA=0.0028;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70304439 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.959;LDAF=0.0709;AVGPOST=0.9930;RSQ=0.9675;ERATE=0.0007;THETA=0.0033;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70304460 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.780;LDAF=0.0044;AVGPOST=0.9957;RSQ=0.6189;ERATE=0.0008;THETA=0.0117;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70304548 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.511;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4454;ERATE=0.0005;THETA=0.0112;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70304580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0065;AVGPOST=0.9961;RSQ=0.7625;ERATE=0.0006;THETA=0.0019;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70304612 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.989;LDAF=0.0452;AVGPOST=0.9977;RSQ=0.9797;ERATE=0.0003;THETA=0.0189;AC=98;AN=2184 GT:DS:GL:BD 0.04487180 0 1 70304716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.624;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0004;THETA=0.0126;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70304718 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2502;AVGPOST=0.9948;RSQ=0.9891;ERATE=0.0009;THETA=0.0010;AC=547;AN=2184 GT:DS:GL:BD 0.25045788 0 1 70304859 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0035;AVGPOST=0.9993;RSQ=0.9113;ERATE=0.0003;THETA=0.0034;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70304909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2516;AVGPOST=0.9971;RSQ=0.9939;ERATE=0.0005;THETA=0.0004;AC=550;AN=2184 GT:DS:GL:BD 0.25183150 0 1 70304977 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.2513;AVGPOST=0.9968;RSQ=0.9933;ERATE=0.0006;THETA=0.0040;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 70304992 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0058;AVGPOST=0.9998;RSQ=0.9610;ERATE=0.0003;THETA=0.0008;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70305203 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0048;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305282 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9732;ERATE=0.0008;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70305321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0037;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70305422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0019;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305463 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305480 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8224;ERATE=0.0003;THETA=0.0020;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70305526 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0017;AVGPOST=0.9996;RSQ=0.9210;ERATE=0.0003;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70305535 rs71173275 TAGAG T 13552 PASS INDEL;BAVGPOST=0.980;BRSQ=0.879;LDAF=0.0739;AVGPOST=0.9771;RSQ=0.8844;ERATE=0.0006;THETA=0.0004;AC=151;AN=2184 GT:DS:GL:BD 0.06913920 0 1 70305559 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8642;ERATE=0.0003;THETA=0.0045;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305590 . A AG 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5517;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305590 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70305796 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0012;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70305817 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70305860 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0772;AVGPOST=0.9998;RSQ=0.9989;ERATE=0.0003;THETA=0.0011;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70305959 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70305964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70305986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0204;AVGPOST=0.9994;RSQ=0.9872;ERATE=0.0010;THETA=0.0009;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70306001 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1957;AVGPOST=0.9998;RSQ=0.9995;ERATE=0.0003;THETA=0.0004;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70306008 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0169;AVGPOST=1.0000;RSQ=0.9988;ERATE=0.0003;THETA=0.0016;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70306082 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9979;ERATE=0.0007;THETA=0.0051;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70306083 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4306;AVGPOST=0.9976;RSQ=0.9960;ERATE=0.0005;THETA=0.0005;AC=939;AN=2184 GT:DS:GL:BD 0.42994505 0 1 70306219 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.0263;AVGPOST=0.9989;RSQ=0.9829;ERATE=0.0003;THETA=0.0005;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70306308 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.923;LDAF=0.0096;AVGPOST=0.9987;RSQ=0.9498;ERATE=0.0003;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70306344 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.807;LDAF=0.0686;AVGPOST=0.9757;RSQ=0.8571;ERATE=0.0005;THETA=0.0003;AC=131;AN=2184 GT:DS:GL:BD 0.05998169 0 1 70306434 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0016;AVGPOST=0.9977;RSQ=0.4426;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70306534 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.910;LDAF=0.0020;AVGPOST=0.9993;RSQ=0.8334;ERATE=0.0005;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70306598 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.6435;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70306607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.892;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8895;ERATE=0.0005;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70306712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5156;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70306740 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.995;LDAF=0.2925;AVGPOST=0.9986;RSQ=0.9974;ERATE=0.0004;THETA=0.0004;AC=640;AN=2184 GT:DS:GL:BD 0.29304031 0 1 70306763 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.765;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5254;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70306846 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.915;LDAF=0.0597;AVGPOST=0.9883;RSQ=0.9245;ERATE=0.0004;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 70306860 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0411;AVGPOST=0.9992;RSQ=0.9917;ERATE=0.0004;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 70306964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0114;AVGPOST=0.9993;RSQ=0.9740;ERATE=0.0003;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70306998 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.6809;AVGPOST=0.9963;RSQ=0.9936;ERATE=0.0005;THETA=0.0003;AC=1488;AN=2184 GT:DS:GL:BD 0.68131870 1 1 70307109 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6162;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307190 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0170;AVGPOST=0.9998;RSQ=0.9952;ERATE=0.0003;THETA=0.0004;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70307347 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0064;AVGPOST=0.9995;RSQ=0.9723;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70307352 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307361 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=0.9996;RSQ=0.8750;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70307507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70307544 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0010;AVGPOST=0.9995;RSQ=0.7563;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70307553 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0773;AVGPOST=0.9995;RSQ=0.9967;ERATE=0.0003;THETA=0.0003;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70307615 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5172;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307616 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5945;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.719;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7854;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307790 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.947;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8540;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70307863 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308015 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0061;AVGPOST=0.9996;RSQ=0.9682;ERATE=0.0003;THETA=0.0002;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70308082 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8297;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70308278 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0028;AVGPOST=0.9999;RSQ=0.9775;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70308288 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9997;RSQ=0.8930;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70308301 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308375 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308451 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9298;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70308482 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308483 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308571 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2377;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0005;AC=520;AN=2184 GT:DS:GL:BD 0.23809524 0 1 70308580 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70308594 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2523;AVGPOST=0.9998;RSQ=0.9996;ERATE=0.0003;THETA=0.0005;AC=552;AN=2184 GT:DS:GL:BD 0.25274727 0 1 70308621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2518;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 70308717 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2518;AVGPOST=0.9999;RSQ=0.9998;ERATE=0.0003;THETA=0.0005;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 70308748 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.1458;AVGPOST=0.9988;RSQ=0.9964;ERATE=0.0003;THETA=0.0004;AC=319;AN=2184 GT:DS:GL:BD 0.14606227 0 1 70308935 . C CT 17758 PASS INDEL;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1583;AVGPOST=0.9984;RSQ=0.9950;ERATE=0.0005;THETA=0.0005;AC=346;AN=2184 GT:DS:GL:BD 0.15842491 0 1 70308964 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9545;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70308989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.963;LDAF=0.0048;AVGPOST=0.9992;RSQ=0.9238;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70308994 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0056;AVGPOST=0.9999;RSQ=0.9881;ERATE=0.0003;THETA=0.0008;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70309076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1188;AVGPOST=0.9996;RSQ=0.9983;ERATE=0.0003;THETA=0.0002;AC=259;AN=2184 GT:DS:GL:BD 0.11858974 0 1 70309097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6853;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70309149 . A AT 10345 PASS INDEL;BAVGPOST=0.994;BRSQ=0.979;LDAF=0.1750;AVGPOST=0.9968;RSQ=0.9908;ERATE=0.0005;THETA=0.0004;AC=383;AN=2184 GT:DS:GL:BD 0.17536630 0 1 70309168 rs111358582 T TC 25125 PASS INDEL;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1742;AVGPOST=0.9977;RSQ=0.9932;ERATE=0.0005;THETA=0.0007;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 70309169 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.949;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9149;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70309272 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0071;AVGPOST=0.9990;RSQ=0.9398;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70309403 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70309445 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0051;AVGPOST=0.9999;RSQ=0.9914;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70309497 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=1.0000;RSQ=0.9932;ERATE=0.0003;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70309499 rs112979975 A AC 25589 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1767;AVGPOST=0.9978;RSQ=0.9940;ERATE=0.0004;THETA=0.0004;AC=386;AN=2184 GT:DS:GL:BD 0.17673993 0 1 70309516 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=1.0000;RSQ=0.9906;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70309526 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70309566 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70309597 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0;LDAF=0.0000;AVGPOST=1.0000;RSQ=0.0000;ERATE=0.0003;THETA=0.0005;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70309639 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1746;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70309676 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0165;AVGPOST=0.9999;RSQ=0.9973;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70310124 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8940;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70310254 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.1747;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0005;THETA=0.0002;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70310256 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6407;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70310275 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.979;LDAF=0.0175;AVGPOST=0.9991;RSQ=0.9797;ERATE=0.0003;THETA=0.0003;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70310321 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9261;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70310467 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8962;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70310472 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9931;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70310567 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70310642 MERGED_DEL_2_7754 GTCCCTGGCAGAACTGAAGCTGGGGATGTAGATGAGATCATCAAGTGACAGGGGAGAGAATGAGAAAAGAAGGGGTCAGGGACAAGCTTTAAAGAGCTCTGGCTTCAAAGGTTAGGGAGCAGAGAATGGACATTCAAAGAAGAAATGGAAATAATGGCCAGAAAGATGCAGGGGCTGGGGCAGGAGAAGC G . . SV;BAVGPOST=0.995;BRSQ=0.526;LDAF=0.0058;AVGPOST=0.9924;RSQ=0.4526;ERATE=0.0024;THETA=0.0004;CIEND=-75;78;CIPOS=-85;72;END=234571872;HOMLEN=2;HOMSEQ=TC;SOURCE=BreakDancer_234570434_234571865 GT:DS:GL:BD 0.00228938 0 1 70310931 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6525;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70311003 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70311136 . AG A 78 PASS INDEL;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4961;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70311159 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.1083;AVGPOST=0.9992;RSQ=0.9966;ERATE=0.0004;THETA=0.0003;AC=236;AN=2184 GT:DS:GL:BD 0.10805861 0 1 70311169 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0165;AVGPOST=1.0000;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70311182 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.8139;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70311217 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0119;AVGPOST=0.9998;RSQ=0.9915;ERATE=0.0003;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70311248 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1742;AVGPOST=0.9982;RSQ=0.9942;ERATE=0.0008;THETA=0.0003;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70311373 . T TAAAAATAC 14677 PASS INDEL;BAVGPOST=0.961;BRSQ=0.852;LDAF=0.1552;AVGPOST=0.9860;RSQ=0.9561;ERATE=0.0014;THETA=0.0002;AC=343;AN=2184 GT:DS:GL:BD 0.15705128 0 1 70311544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0029;AVGPOST=0.9974;RSQ=0.6424;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70311583 rs112010867 C CGG 8023 PASS INDEL;BAVGPOST=0.963;BRSQ=0.858;LDAF=0.1489;AVGPOST=0.9761;RSQ=0.9304;ERATE=0.0014;THETA=0.0005;AC=327;AN=2184 GT:DS:GL:BD 0.14972527 0 1 70311607 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.905;LDAF=0.1331;AVGPOST=0.9790;RSQ=0.9361;ERATE=0.0005;THETA=0.0002;AC=296;AN=2184 GT:DS:GL:BD 0.13553114 0 1 70311621 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.896;LDAF=0.1233;AVGPOST=0.9808;RSQ=0.9364;ERATE=0.0004;THETA=0.0004;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 70311625 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0021;AVGPOST=0.9994;RSQ=0.8688;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70311729 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.991;LDAF=0.2518;AVGPOST=0.9969;RSQ=0.9940;ERATE=0.0005;THETA=0.0001;AC=549;AN=2184 GT:DS:GL:BD 0.25137362 0 1 70311784 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.754;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7428;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70311785 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0120;AVGPOST=0.9995;RSQ=0.9814;ERATE=0.0004;THETA=0.0003;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70311847 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1596;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=349;AN=2184 GT:DS:GL:BD 0.15979853 0 1 70311915 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.966;LDAF=0.0312;AVGPOST=0.9983;RSQ=0.9748;ERATE=0.0003;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70311970 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.1749;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0004;THETA=0.0002;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70312004 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.7380;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70312012 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1746;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0011;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70312038 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.991;LDAF=0.1742;AVGPOST=0.9987;RSQ=0.9956;ERATE=0.0005;THETA=0.0002;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 70312092 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.992;LDAF=0.3665;AVGPOST=0.9969;RSQ=0.9949;ERATE=0.0005;THETA=0.0005;AC=803;AN=2184 GT:DS:GL:BD 0.36767399 0 1 70312103 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70312111 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6472;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70312151 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1743;AVGPOST=0.9996;RSQ=0.9986;ERATE=0.0003;THETA=0.0002;AC=381;AN=2184 GT:DS:GL:BD 0.17445055 0 1 70312172 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.916;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7475;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70312222 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.893;LDAF=0.0294;AVGPOST=0.9918;RSQ=0.9093;ERATE=0.0003;THETA=0.0007;AC=61;AN=2184 GT:DS:GL:BD 0.02793040 0 1 70312289 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.991;LDAF=0.1747;AVGPOST=0.9984;RSQ=0.9954;ERATE=0.0004;THETA=0.0002;AC=382;AN=2184 GT:DS:GL:BD 0.17490843 0 1 70312338 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.826;LDAF=0.0040;AVGPOST=0.9975;RSQ=0.7497;ERATE=0.0004;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70312349 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1748;AVGPOST=0.9964;RSQ=0.9905;ERATE=0.0004;THETA=0.0004;AC=385;AN=2184 GT:DS:GL:BD 0.17628205 0 1 70312370 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.988;LDAF=0.1733;AVGPOST=0.9977;RSQ=0.9941;ERATE=0.0003;THETA=0.0002;AC=380;AN=2184 GT:DS:GL:BD 0.17399268 0 1 70312372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1737;AVGPOST=0.9984;RSQ=0.9949;ERATE=0.0007;THETA=0.0001;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 70312412 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1729;AVGPOST=0.9964;RSQ=0.9894;ERATE=0.0008;THETA=0.0002;AC=379;AN=2184 GT:DS:GL:BD 0.17353480 0 1 70312437 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.7056;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70312438 . CT C 83 PASS INDEL;BAVGPOST=1.000;BRSQ=0.691;LDAF=0.0028;AVGPOST=0.9970;RSQ=0.5315;ERATE=0.0007;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70312455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.962;LDAF=0.0418;AVGPOST=0.9973;RSQ=0.9745;ERATE=0.0004;THETA=0.0002;AC=91;AN=2184 GT:DS:GL:BD 0.04166667 0 1 70312474 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0168;AVGPOST=0.9993;RSQ=0.9800;ERATE=0.0005;THETA=0.0002;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70312570 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1224;AVGPOST=0.9952;RSQ=0.9843;ERATE=0.0005;THETA=0.0004;AC=265;AN=2184 GT:DS:GL:BD 0.12133700 0 1 70312574 . TA T 1410 PASS INDEL;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0178;AVGPOST=0.9984;RSQ=0.9619;ERATE=0.0005;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70312752 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.638;LDAF=0.0044;AVGPOST=0.9969;RSQ=0.7121;ERATE=0.0006;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70312869 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5682;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70312924 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9995;RSQ=0.9346;ERATE=0.0003;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70312943 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.654;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70313000 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.997;LDAF=0.1657;AVGPOST=0.9984;RSQ=0.9953;ERATE=0.0003;THETA=0.0005;AC=362;AN=2184 GT:DS:GL:BD 0.16575092 0 1 70313121 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70313190 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0027;AVGPOST=0.9993;RSQ=0.9016;ERATE=0.0007;THETA=0.0003;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70313272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9452;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70313332 . G GT 71 PASS INDEL;BAVGPOST=0.995;BRSQ=0.626;LDAF=0.0107;AVGPOST=0.9856;RSQ=0.4711;ERATE=0.0019;THETA=0.0014;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70313365 . T TG 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.803;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70313452 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0614;AVGPOST=0.9994;RSQ=0.9966;ERATE=0.0003;THETA=0.0002;AC=135;AN=2184 GT:DS:GL:BD 0.06181319 0 1 70313509 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1587;AVGPOST=0.9996;RSQ=0.9988;ERATE=0.0005;THETA=0.0004;AC=347;AN=2184 GT:DS:GL:BD 0.15888278 0 1 70313655 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70313658 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70313672 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0018;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70313678 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.0176;AVGPOST=0.9995;RSQ=0.9887;ERATE=0.0003;THETA=0.0002;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70313749 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.4593;AVGPOST=0.9995;RSQ=0.9991;ERATE=0.0005;THETA=0.0004;AC=1004;AN=2184 GT:DS:GL:BD 0.45970696 0 1 70313841 . TATATATATAGAG T 4493 PASS INDEL;BAVGPOST=0.464;BRSQ=0.133;LDAF=0.4338;AVGPOST=0.6146;RSQ=0.3048;ERATE=0.0452;THETA=0.0003;AC=775;AN=2184 GT:DS:GL:BD 0.35485348 0 1 70313985 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2586;AVGPOST=0.9978;RSQ=0.9957;ERATE=0.0004;THETA=0.0006;AC=563;AN=2184 GT:DS:GL:BD 0.25778389 0 1 70314113 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2577;AVGPOST=0.9977;RSQ=0.9956;ERATE=0.0005;THETA=0.0025;AC=561;AN=2184 GT:DS:GL:BD 0.25686812 0 1 70314269 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.903;LDAF=0.0789;AVGPOST=0.9844;RSQ=0.9255;ERATE=0.0006;THETA=0.0015;AC=163;AN=2184 GT:DS:GL:BD 0.07463370 0 1 70314520 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7337;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70314600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.714;LDAF=0.0044;AVGPOST=0.9968;RSQ=0.7406;ERATE=0.0006;THETA=0.0013;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70314691 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0022;AVGPOST=0.9970;RSQ=0.4209;ERATE=0.0009;THETA=0.0038;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70314706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.936;LDAF=0.2593;AVGPOST=0.9794;RSQ=0.9644;ERATE=0.0004;THETA=0.0008;AC=570;AN=2184 GT:DS:GL:BD 0.26098901 0 1 70314799 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.933;LDAF=0.2582;AVGPOST=0.9798;RSQ=0.9647;ERATE=0.0007;THETA=0.0003;AC=569;AN=2184 GT:DS:GL:BD 0.26053113 0 1 70314809 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.969;BRSQ=0.933;LDAF=0.2567;AVGPOST=0.9774;RSQ=0.9611;ERATE=0.0010;THETA=0.0007;AC=564;AN=2184 GT:DS:GL:BD 0.25824177 0 1 70314813 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.961;LDAF=0.6312;AVGPOST=0.9845;RSQ=0.9754;ERATE=0.0029;THETA=0.0005;AC=1385;AN=2184 GT:DS:GL:BD 0.63415754 1 1 70314839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.609;LDAF=0.0053;AVGPOST=0.9951;RSQ=0.6367;ERATE=0.0006;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70314860 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.967;LDAF=0.2687;AVGPOST=0.9947;RSQ=0.9900;ERATE=0.0004;THETA=0.0006;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 70314867 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4489;ERATE=0.0004;THETA=0.0038;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70314874 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.6597;AVGPOST=0.9957;RSQ=0.9925;ERATE=0.0009;THETA=0.0018;AC=1442;AN=2184 GT:DS:GL:BD 0.66025639 1 1 70314941 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.734;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8412;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70314947 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.764;LDAF=0.0034;AVGPOST=0.9991;RSQ=0.8807;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70314975 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0015;AVGPOST=0.9981;RSQ=0.5408;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70315054 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0018;AVGPOST=0.9984;RSQ=0.6411;ERATE=0.0004;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70315068 . TTAAA T 160 PASS INDEL;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0009;AVGPOST=0.9987;RSQ=0.3952;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70315106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7496;ERATE=0.0003;THETA=0.0068;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70315161 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0074;AVGPOST=0.9973;RSQ=0.8607;ERATE=0.0004;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70315291 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.482;LDAF=0.0058;AVGPOST=0.9924;RSQ=0.4776;ERATE=0.0007;THETA=0.0014;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70315338 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.867;BRSQ=0.652;LDAF=0.2054;AVGPOST=0.8953;RSQ=0.7881;ERATE=0.0077;THETA=0.0006;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70315440 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.913;LDAF=0.2641;AVGPOST=0.9785;RSQ=0.9604;ERATE=0.0012;THETA=0.0017;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 70315460 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.616;LDAF=0.0027;AVGPOST=0.9961;RSQ=0.3792;ERATE=0.0008;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70315490 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.976;BRSQ=0.950;LDAF=0.2649;AVGPOST=0.9721;RSQ=0.9498;ERATE=0.0019;THETA=0.0024;AC=580;AN=2184 GT:DS:GL:BD 0.26556778 0 1 70315524 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.937;BRSQ=0.870;LDAF=0.2798;AVGPOST=0.9731;RSQ=0.9551;ERATE=0.0006;THETA=0.0006;AC=619;AN=2184 GT:DS:GL:BD 0.28342491 0 1 70315589 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.891;LDAF=0.2545;AVGPOST=0.9762;RSQ=0.9597;ERATE=0.0004;THETA=0.0008;AC=560;AN=2184 GT:DS:GL:BD 0.25641027 0 1 70315592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0028;AVGPOST=0.9961;RSQ=0.4543;ERATE=0.0005;THETA=0.0034;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70315652 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.906;LDAF=0.0154;AVGPOST=0.9948;RSQ=0.8636;ERATE=0.0013;THETA=0.0023;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70315724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.966;LDAF=0.6310;AVGPOST=0.9938;RSQ=0.9900;ERATE=0.0005;THETA=0.0036;AC=1382;AN=2184 GT:DS:GL:BD 0.63278389 1 1 70315815 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.974;BRSQ=0.946;LDAF=0.2677;AVGPOST=0.9883;RSQ=0.9797;ERATE=0.0006;THETA=0.0006;AC=589;AN=2184 GT:DS:GL:BD 0.26968864 0 1 70315823 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4551;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70315843 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0099;AVGPOST=0.9983;RSQ=0.9399;ERATE=0.0003;THETA=0.0040;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70315910 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.774;LDAF=0.0024;AVGPOST=0.9971;RSQ=0.4918;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70315938 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0028;AVGPOST=0.9997;RSQ=0.9473;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70315953 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0016;AVGPOST=0.9993;RSQ=0.7891;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70315956 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.3625;AVGPOST=0.9962;RSQ=0.9936;ERATE=0.0006;THETA=0.0008;AC=790;AN=2184 GT:DS:GL:BD 0.36172161 0 1 70315961 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.828;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7691;ERATE=0.0004;THETA=0.0038;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70315979 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.6321;AVGPOST=0.9900;RSQ=0.9836;ERATE=0.0021;THETA=0.0006;AC=1380;AN=2184 GT:DS:GL:BD 0.63186812 1 1 70315983 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5790;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70315985 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5650;ERATE=0.0005;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70316081 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6495;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70316153 . CT C 101 PASS INDEL;BAVGPOST=0.998;BRSQ=0.850;LDAF=0.0062;AVGPOST=0.9975;RSQ=0.8515;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70316196 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70316240 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.3626;AVGPOST=0.9985;RSQ=0.9974;ERATE=0.0004;THETA=0.0008;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 70316450 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.927;LDAF=0.0203;AVGPOST=0.9963;RSQ=0.9292;ERATE=0.0005;THETA=0.0006;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70316939 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0016;AVGPOST=0.9982;RSQ=0.5117;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70317007 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.700;LDAF=0.0042;AVGPOST=0.9958;RSQ=0.6316;ERATE=0.0008;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70317010 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.806;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5235;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70317040 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.751;LDAF=0.0043;AVGPOST=0.9980;RSQ=0.8090;ERATE=0.0006;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70317068 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0099;AVGPOST=0.9985;RSQ=0.9446;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70317078 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.936;LDAF=0.0005;AVGPOST=0.9995;RSQ=0.5714;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70317244 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.847;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70317280 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.3626;AVGPOST=0.9973;RSQ=0.9949;ERATE=0.0006;THETA=0.0004;AC=791;AN=2184 GT:DS:GL:BD 0.36217949 0 1 70317314 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0010;AVGPOST=0.9996;RSQ=0.8292;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70317316 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2719;AVGPOST=0.9982;RSQ=0.9966;ERATE=0.0004;THETA=0.0002;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 70317366 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5826;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70317406 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.840;LDAF=0.0052;AVGPOST=0.9981;RSQ=0.8332;ERATE=0.0004;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70317569 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.586;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5897;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70317570 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7776;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70317632 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70317640 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0022;AVGPOST=0.9984;RSQ=0.7458;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70317994 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0040;AVGPOST=0.9984;RSQ=0.8266;ERATE=0.0004;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70317995 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.863;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7340;ERATE=0.0005;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70318387 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2718;AVGPOST=0.9974;RSQ=0.9949;ERATE=0.0007;THETA=0.0005;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 70318453 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.5606;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70318467 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.833;LDAF=0.0062;AVGPOST=0.9987;RSQ=0.9137;ERATE=0.0004;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70318603 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2721;AVGPOST=0.9979;RSQ=0.9963;ERATE=0.0003;THETA=0.0003;AC=592;AN=2184 GT:DS:GL:BD 0.27106228 0 1 70318617 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2711;AVGPOST=0.9971;RSQ=0.9944;ERATE=0.0005;THETA=0.0012;AC=590;AN=2184 GT:DS:GL:BD 0.27014652 0 1 70318633 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.967;LDAF=0.2596;AVGPOST=0.9798;RSQ=0.9641;ERATE=0.0058;THETA=0.0007;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 70318915 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.940;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70318942 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0608;AVGPOST=0.9999;RSQ=0.9990;ERATE=0.0003;THETA=0.0007;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 70318955 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0780;AVGPOST=0.9976;RSQ=0.9855;ERATE=0.0004;THETA=0.0010;AC=169;AN=2184 GT:DS:GL:BD 0.07738096 0 1 70319057 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.852;LDAF=0.0041;AVGPOST=0.9984;RSQ=0.8261;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70319083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.820;LDAF=0.0018;AVGPOST=0.9985;RSQ=0.6488;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70319106 rs55755461 AAAC A 48154 PASS INDEL;BAVGPOST=0.973;BRSQ=0.957;LDAF=0.5114;AVGPOST=0.9892;RSQ=0.9841;ERATE=0.0010;THETA=0.0004;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 70319116 . CAAG C 21794 PASS INDEL;BAVGPOST=0.963;BRSQ=0.937;LDAF=0.5165;AVGPOST=0.9231;RSQ=0.8863;ERATE=0.0183;THETA=0.0003;AC=1126;AN=2184 GT:DS:GL:BD 0.51556778 1 1 70319122 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0234;AVGPOST=0.9987;RSQ=0.9807;ERATE=0.0004;THETA=0.0004;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70319221 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0069;AVGPOST=0.9989;RSQ=0.9455;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70319326 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4851;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319328 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.968;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5425;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319332 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.889;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8138;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319333 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.729;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5611;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.798;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319370 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0657;AVGPOST=0.9991;RSQ=0.9933;ERATE=0.0005;THETA=0.0007;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 70319372 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0016;AVGPOST=0.9985;RSQ=0.6149;ERATE=0.0005;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70319377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0042;AVGPOST=0.9982;RSQ=0.8166;ERATE=0.0005;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70319428 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4959;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319468 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.986;LDAF=0.5155;AVGPOST=0.9977;RSQ=0.9962;ERATE=0.0006;THETA=0.0003;AC=1126;AN=2184 GT:DS:GL:BD 0.51556778 1 1 70319687 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.927;BRSQ=0.878;LDAF=0.4582;AVGPOST=0.9395;RSQ=0.9142;ERATE=0.0067;THETA=0.0002;AC=1020;AN=2184 GT:DS:GL:BD 0.46703297 0 1 70319719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0672;AVGPOST=0.9958;RSQ=0.9753;ERATE=0.0005;THETA=0.0012;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 70319775 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.5162;AVGPOST=0.9960;RSQ=0.9940;ERATE=0.0008;THETA=0.0007;AC=1128;AN=2184 GT:DS:GL:BD 0.51648355 1 1 70319846 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.737;LDAF=0.0016;AVGPOST=0.9988;RSQ=0.6769;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70319849 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0034;AVGPOST=0.9995;RSQ=0.9354;ERATE=0.0004;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70319854 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7021;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70319906 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1681;AVGPOST=0.9975;RSQ=0.9916;ERATE=0.0005;THETA=0.0005;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 70319919 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7966;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70319935 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.501;LDAF=0.0150;AVGPOST=0.9822;RSQ=0.5324;ERATE=0.0016;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70320032 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9991;RSQ=0.6802;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70320050 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.977;BRSQ=0.955;LDAF=0.6788;AVGPOST=0.9830;RSQ=0.9728;ERATE=0.0020;THETA=0.0006;AC=1491;AN=2184 GT:DS:GL:BD 0.68269229 1 1 70320149 . AG A 57 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0039;AVGPOST=0.9963;RSQ=0.6156;ERATE=0.0007;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70320181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.732;LDAF=0.0148;AVGPOST=0.9870;RSQ=0.6811;ERATE=0.0006;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70320189 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1679;AVGPOST=0.9986;RSQ=0.9954;ERATE=0.0004;THETA=0.0002;AC=366;AN=2184 GT:DS:GL:BD 0.16758242 0 1 70320190 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0015;AVGPOST=0.9991;RSQ=0.7739;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70320251 rs35257076 A AT 37094 PASS INDEL;BAVGPOST=0.972;BRSQ=0.952;LDAF=0.5121;AVGPOST=0.9574;RSQ=0.9404;ERATE=0.0094;THETA=0.0003;AC=1126;AN=2184 GT:DS:GL:BD 0.51556778 1 1 70320305 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70320342 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70320482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0082;AVGPOST=0.9998;RSQ=0.9893;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70320507 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0055;AVGPOST=1.0000;RSQ=0.9966;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70320550 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4826;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1053;AN=2184 GT:DS:GL:BD 0.48214287 0 1 70320593 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0023;AVGPOST=0.9998;RSQ=0.9626;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70320609 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70320625 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70320711 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6814;AVGPOST=0.9997;RSQ=0.9994;ERATE=0.0003;THETA=0.0004;AC=1488;AN=2184 GT:DS:GL:BD 0.68131870 1 1 70320735 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70320808 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1263;AVGPOST=0.9998;RSQ=0.9992;ERATE=0.0003;THETA=0.0003;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 70320852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0062;AVGPOST=0.9995;RSQ=0.9779;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70321009 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0021;AVGPOST=0.9993;RSQ=0.8602;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70321018 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7125;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70321118 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9582;ERATE=0.0004;THETA=0.0025;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70321161 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.966;LDAF=0.1991;AVGPOST=0.9934;RSQ=0.9858;ERATE=0.0004;THETA=0.0010;AC=439;AN=2184 GT:DS:GL:BD 0.20100732 0 1 70321195 rs10694159 G GCTTA 30975 PASS INDEL;BAVGPOST=0.981;BRSQ=0.949;LDAF=0.1947;AVGPOST=0.9901;RSQ=0.9761;ERATE=0.0005;THETA=0.0003;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70321198 rs67963039 C CT 5082 PASS INDEL;BAVGPOST=0.972;BRSQ=0.922;LDAF=0.1928;AVGPOST=0.9881;RSQ=0.9716;ERATE=0.0007;THETA=0.0005;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70321199 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.818;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7130;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70321249 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.2020;AVGPOST=0.9989;RSQ=0.9975;ERATE=0.0003;THETA=0.0005;AC=441;AN=2184 GT:DS:GL:BD 0.20192307 0 1 70321257 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0019;AVGPOST=0.9984;RSQ=0.6881;ERATE=0.0004;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70321265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0081;AVGPOST=0.9965;RSQ=0.8023;ERATE=0.0010;THETA=0.0028;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70321317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.976;LDAF=0.0434;AVGPOST=0.9927;RSQ=0.9360;ERATE=0.0011;THETA=0.0002;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 70321348 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.945;LDAF=0.4716;AVGPOST=0.9655;RSQ=0.9528;ERATE=0.0041;THETA=0.0009;AC=1035;AN=2184 GT:DS:GL:BD 0.47390109 0 1 70321447 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.932;LDAF=0.5571;AVGPOST=0.9811;RSQ=0.9733;ERATE=0.0010;THETA=0.0003;AC=1218;AN=2184 GT:DS:GL:BD 0.55769229 1 1 70321538 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0074;AVGPOST=0.9989;RSQ=0.9358;ERATE=0.0003;THETA=0.0003;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70321555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.973;BRSQ=0.962;LDAF=0.5598;AVGPOST=0.9856;RSQ=0.9803;ERATE=0.0006;THETA=0.0008;AC=1220;AN=2184 GT:DS:GL:BD 0.55860806 1 1 70321587 . C CT 2167 PASS INDEL;BAVGPOST=0.980;BRSQ=0.847;LDAF=0.0824;AVGPOST=0.9455;RSQ=0.7351;ERATE=0.0091;THETA=0.0003;AC=136;AN=2184 GT:DS:GL:BD 0.06227106 0 1 70321590 rs71738766 CT C 21549 PASS INDEL;BAVGPOST=0.928;BRSQ=0.905;LDAF=0.5343;AVGPOST=0.9436;RSQ=0.9232;ERATE=0.0042;THETA=0.0008;AC=1192;AN=2184 GT:DS:GL:BD 0.54578757 1 1 70321617 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.956;BRSQ=0.947;LDAF=0.5570;AVGPOST=0.9670;RSQ=0.9556;ERATE=0.0037;THETA=0.0003;AC=1224;AN=2184 GT:DS:GL:BD 0.56043959 1 1 70321637 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.976;LDAF=0.4936;AVGPOST=0.9965;RSQ=0.9945;ERATE=0.0009;THETA=0.0004;AC=1078;AN=2184 GT:DS:GL:BD 0.49358973 0 1 70321677 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0014;AVGPOST=0.9991;RSQ=0.7176;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70321745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70321781 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70321850 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0242;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70321892 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.8370;ERATE=0.0005;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70321893 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70322007 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0041;AVGPOST=1.0000;RSQ=0.9947;ERATE=0.0003;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70322123 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5805;AVGPOST=0.9994;RSQ=0.9992;ERATE=0.0005;THETA=0.0005;AC=1267;AN=2184 GT:DS:GL:BD 0.58012819 1 1 70322156 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70322262 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5791;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 70322324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0910;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0015;AC=199;AN=2184 GT:DS:GL:BD 0.09111722 0 1 70322392 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70322438 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0059;AVGPOST=1.0000;RSQ=0.9963;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70322486 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0052;AVGPOST=0.9997;RSQ=0.9788;ERATE=0.0006;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70322551 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0101;AVGPOST=0.9867;RSQ=0.5083;ERATE=0.0007;THETA=0.0004;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70322712 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.988;LDAF=0.1211;AVGPOST=0.9972;RSQ=0.9894;ERATE=0.0006;THETA=0.0003;AC=264;AN=2184 GT:DS:GL:BD 0.12087912 0 1 70322792 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.960;LDAF=0.0265;AVGPOST=0.9943;RSQ=0.9287;ERATE=0.0005;THETA=0.0003;AC=56;AN=2184 GT:DS:GL:BD 0.02564103 0 1 70322915 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0071;AVGPOST=0.9995;RSQ=0.9657;ERATE=0.0004;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70322919 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.5860;AVGPOST=0.9991;RSQ=0.9984;ERATE=0.0004;THETA=0.0004;AC=1279;AN=2184 GT:DS:GL:BD 0.58562273 1 1 70323038 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5796;AVGPOST=0.9985;RSQ=0.9981;ERATE=0.0004;THETA=0.0002;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 70323191 rs60783406 ACT A 604 PASS INDEL;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=0.9989;RSQ=0.8894;ERATE=0.0004;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70323194 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0380;AVGPOST=0.9999;RSQ=0.9984;ERATE=0.0003;THETA=0.0002;AC=83;AN=2184 GT:DS:GL:BD 0.03800366 0 1 70323287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5792;AVGPOST=0.9989;RSQ=0.9983;ERATE=0.0004;THETA=0.0004;AC=1264;AN=2184 GT:DS:GL:BD 0.57875460 1 1 70323293 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.864;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.8768;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70323306 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.992;LDAF=0.0915;AVGPOST=0.9996;RSQ=0.9980;ERATE=0.0004;THETA=0.0003;AC=200;AN=2184 GT:DS:GL:BD 0.09157509 0 1 70323375 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7143;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70323442 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.5925;AVGPOST=0.9982;RSQ=0.9969;ERATE=0.0008;THETA=0.0007;AC=1293;AN=2184 GT:DS:GL:BD 0.59203297 1 1 70323515 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.840;LDAF=0.0045;AVGPOST=0.9986;RSQ=0.8765;ERATE=0.0006;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70323554 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5814;AVGPOST=0.9982;RSQ=0.9971;ERATE=0.0006;THETA=0.0040;AC=1269;AN=2184 GT:DS:GL:BD 0.58104396 1 1 70323559 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0363;AVGPOST=0.9996;RSQ=0.9952;ERATE=0.0004;THETA=0.0003;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 70323582 . A AC 4 PASS INDEL;BAVGPOST=1.000;BRSQ=0.791;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6867;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70323712 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.5867;AVGPOST=0.9975;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=1280;AN=2184 GT:DS:GL:BD 0.58608061 1 1 70323752 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.5791;AVGPOST=0.9981;RSQ=0.9969;ERATE=0.0005;THETA=0.0003;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 70323772 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5796;AVGPOST=0.9986;RSQ=0.9978;ERATE=0.0004;THETA=0.0003;AC=1265;AN=2184 GT:DS:GL:BD 0.57921243 1 1 70323812 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7622;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70323873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.5877;AVGPOST=0.9992;RSQ=0.9988;ERATE=0.0003;THETA=0.0002;AC=1283;AN=2184 GT:DS:GL:BD 0.58745420 1 1 70323886 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9995;RSQ=0.9835;ERATE=0.0003;THETA=0.0004;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70323971 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70324054 . G GT 1089 PASS INDEL;BAVGPOST=0.992;BRSQ=0.786;LDAF=0.0275;AVGPOST=0.9757;RSQ=0.6466;ERATE=0.0064;THETA=0.0005;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70324291 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.5024;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70324393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0115;AVGPOST=0.9999;RSQ=0.9961;ERATE=0.0003;THETA=0.0027;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70324448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.939;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8005;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70324455 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.948;LDAF=0.0085;AVGPOST=0.9984;RSQ=0.9322;ERATE=0.0004;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70324474 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1214;AVGPOST=0.9991;RSQ=0.9967;ERATE=0.0003;THETA=0.0002;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 70324504 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.976;LDAF=0.3330;AVGPOST=0.9936;RSQ=0.9877;ERATE=0.0008;THETA=0.0006;AC=730;AN=2184 GT:DS:GL:BD 0.33424908 0 1 70324629 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.956;LDAF=0.3743;AVGPOST=0.9842;RSQ=0.9747;ERATE=0.0016;THETA=0.0004;AC=822;AN=2184 GT:DS:GL:BD 0.37637362 0 1 70324661 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.945;BRSQ=0.420;LDAF=0.9550;AVGPOST=0.9422;RSQ=0.4660;ERATE=0.0074;THETA=0.0006;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 70324754 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.914;LDAF=0.5164;AVGPOST=0.9334;RSQ=0.9044;ERATE=0.0092;THETA=0.0005;AC=1143;AN=2184 GT:DS:GL:BD 0.52335167 1 1 70324789 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0032;AVGPOST=0.9981;RSQ=0.7506;ERATE=0.0006;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70324824 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.949;LDAF=0.1212;AVGPOST=0.9954;RSQ=0.9810;ERATE=0.0006;THETA=0.0008;AC=266;AN=2184 GT:DS:GL:BD 0.12179487 0 1 70324841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4740;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70324889 . TTA T 50 PASS INDEL;BAVGPOST=1.000;BRSQ=0.820;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5675;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70324966 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.859;LDAF=0.0148;AVGPOST=0.9960;RSQ=0.8879;ERATE=0.0005;THETA=0.0004;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70325212 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.2217;AVGPOST=0.9916;RSQ=0.9830;ERATE=0.0007;THETA=0.0003;AC=482;AN=2184 GT:DS:GL:BD 0.22069597 0 1 70325279 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.846;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.5266;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70325300 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0130;AVGPOST=0.9986;RSQ=0.9505;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70325324 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.935;BRSQ=0.334;LDAF=0.9248;AVGPOST=0.8988;RSQ=0.4438;ERATE=0.0126;THETA=0.0025;AC=2095;AN=2184 GT:DS:GL:BD 0.95924908 1 1 70325453 . TA T 9 PASS INDEL;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70325624 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5205;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70325662 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.0114;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70325684 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9013;ERATE=0.0004;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70325730 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4853;ERATE=0.0004;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70325873 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7082;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70326260 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70326310 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.7406;AVGPOST=0.9961;RSQ=0.9926;ERATE=0.0007;THETA=0.0005;AC=1617;AN=2184 GT:DS:GL:BD 0.74038464 1 1 70326343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.935;LDAF=0.0062;AVGPOST=0.9994;RSQ=0.9709;ERATE=0.0003;THETA=0.0024;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70326454 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1342;AVGPOST=0.9983;RSQ=0.9946;ERATE=0.0003;THETA=0.0003;AC=293;AN=2184 GT:DS:GL:BD 0.13415751 0 1 70326464 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0126;AVGPOST=0.9992;RSQ=0.9753;ERATE=0.0003;THETA=0.0031;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70326479 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70326520 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.886;LDAF=0.0049;AVGPOST=0.9987;RSQ=0.8926;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70326745 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1234;AVGPOST=0.9981;RSQ=0.9923;ERATE=0.0004;THETA=0.0004;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 70326749 . TTG T 152 PASS INDEL;BAVGPOST=0.999;BRSQ=0.464;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4226;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70326767 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7117;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70326771 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.959;LDAF=0.0500;AVGPOST=0.9978;RSQ=0.9840;ERATE=0.0004;THETA=0.0010;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 70326862 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.939;BRSQ=0.890;LDAF=0.3778;AVGPOST=0.9158;RSQ=0.8723;ERATE=0.0098;THETA=0.0004;AC=818;AN=2184 GT:DS:GL:BD 0.37454212 0 1 70326913 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.794;LDAF=0.0374;AVGPOST=0.9833;RSQ=0.8262;ERATE=0.0011;THETA=0.0003;AC=74;AN=2184 GT:DS:GL:BD 0.03388279 0 1 70326919 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.958;BRSQ=0.903;LDAF=0.2522;AVGPOST=0.9589;RSQ=0.9221;ERATE=0.0012;THETA=0.0004;AC=551;AN=2184 GT:DS:GL:BD 0.25228938 0 1 70326940 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.712;LDAF=0.0032;AVGPOST=0.9964;RSQ=0.5392;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70327018 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.962;LDAF=0.0576;AVGPOST=0.9847;RSQ=0.9017;ERATE=0.0014;THETA=0.0004;AC=112;AN=2184 GT:DS:GL:BD 0.05128205 0 1 70327022 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0028;AVGPOST=0.9989;RSQ=0.8589;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70327045 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.651;LDAF=0.0098;AVGPOST=0.9884;RSQ=0.5406;ERATE=0.0018;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70327053 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.975;LDAF=0.3062;AVGPOST=0.9855;RSQ=0.9742;ERATE=0.0019;THETA=0.0040;AC=672;AN=2184 GT:DS:GL:BD 0.30769232 0 1 70327076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.982;BRSQ=0.973;LDAF=0.3861;AVGPOST=0.9778;RSQ=0.9673;ERATE=0.0024;THETA=0.0009;AC=847;AN=2184 GT:DS:GL:BD 0.38782051 0 1 70327126 . CT C 126 PASS INDEL;BAVGPOST=0.999;BRSQ=0.675;LDAF=0.0019;AVGPOST=0.9972;RSQ=0.3549;ERATE=0.0006;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70327128 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0493;AVGPOST=0.9976;RSQ=0.9814;ERATE=0.0005;THETA=0.0011;AC=107;AN=2184 GT:DS:GL:BD 0.04899267 0 1 70327131 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.943;BRSQ=0.877;LDAF=0.3007;AVGPOST=0.9686;RSQ=0.9427;ERATE=0.0018;THETA=0.0005;AC=669;AN=2184 GT:DS:GL:BD 0.30631867 0 1 70327224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0077;AVGPOST=0.9954;RSQ=0.7719;ERATE=0.0005;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70327258 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.964;BRSQ=0.918;LDAF=0.3104;AVGPOST=0.9499;RSQ=0.9086;ERATE=0.0076;THETA=0.0001;AC=661;AN=2184 GT:DS:GL:BD 0.30265567 0 1 70327267 . CA C 465 PASS INDEL;BAVGPOST=0.916;BRSQ=0.516;LDAF=0.0883;AVGPOST=0.9264;RSQ=0.6736;ERATE=0.0025;THETA=0.0003;AC=171;AN=2184 GT:DS:GL:BD 0.07829671 0 1 70327325 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.972;LDAF=0.1702;AVGPOST=0.9913;RSQ=0.9771;ERATE=0.0010;THETA=0.0005;AC=370;AN=2184 GT:DS:GL:BD 0.16941392 0 1 70327334 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0202;AVGPOST=0.9929;RSQ=0.8538;ERATE=0.0009;THETA=0.0002;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70327335 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0094;AVGPOST=0.9992;RSQ=0.9597;ERATE=0.0004;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70327471 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0093;AVGPOST=0.9996;RSQ=0.9797;ERATE=0.0003;THETA=0.0035;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70327644 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7390;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70327656 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9633;ERATE=0.0003;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70327660 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3147;AVGPOST=0.9982;RSQ=0.9965;ERATE=0.0005;THETA=0.0002;AC=689;AN=2184 GT:DS:GL:BD 0.31547618 0 1 70327698 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0595;AVGPOST=0.9997;RSQ=0.9973;ERATE=0.0003;THETA=0.0006;AC=130;AN=2184 GT:DS:GL:BD 0.05952381 0 1 70327713 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0024;AVGPOST=0.9999;RSQ=0.9722;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70327726 . G GC 7 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70327740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0026;AVGPOST=0.9966;RSQ=0.5230;ERATE=0.0014;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70327901 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.890;LDAF=0.0062;AVGPOST=0.9974;RSQ=0.8260;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70328020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0267;AVGPOST=0.9997;RSQ=0.9944;ERATE=0.0003;THETA=0.0006;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70328035 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0094;AVGPOST=0.9995;RSQ=0.9720;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70328122 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0020;AVGPOST=0.9995;RSQ=0.8821;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70328139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.808;LDAF=0.0140;AVGPOST=0.9936;RSQ=0.8026;ERATE=0.0005;THETA=0.0007;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70328249 . G GC 5 PASS INDEL;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0014;AVGPOST=0.9980;RSQ=0.3975;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6583;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328317 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8480;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70328327 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9481;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70328399 . GTTATAA G 204 PASS INDEL;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0049;AVGPOST=0.9979;RSQ=0.8065;ERATE=0.0005;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70328435 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.793;LDAF=0.9985;AVGPOST=0.9997;RSQ=0.9049;ERATE=0.0003;THETA=0.0005;AC=2181;AN=2184 GT:DS:GL:BD 0.99862635 1 1 70328630 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.893;LDAF=0.0157;AVGPOST=0.9974;RSQ=0.9314;ERATE=0.0003;THETA=0.0003;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70328723 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6239;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70328732 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0030;AVGPOST=0.9988;RSQ=0.8362;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70328794 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7287;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70328797 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5128;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328798 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.781;LDAF=0.0023;AVGPOST=0.9980;RSQ=0.6405;ERATE=0.0008;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70328819 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.720;LDAF=0.0020;AVGPOST=0.9979;RSQ=0.5540;ERATE=0.0005;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70328851 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328889 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7805;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328891 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0039;AVGPOST=0.9978;RSQ=0.7598;ERATE=0.0007;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70328901 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5943;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328997 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6710;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70328998 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0023;AVGPOST=0.9999;RSQ=0.9813;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70329224 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70329235 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.962;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70329244 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0012;AVGPOST=0.9983;RSQ=0.3330;ERATE=0.0005;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70329455 . CTG C 27 PASS INDEL;BAVGPOST=0.999;BRSQ=0.662;LDAF=0.0027;AVGPOST=0.9973;RSQ=0.5570;ERATE=0.0006;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70329460 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.954;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8686;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70329487 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6547;ERATE=0.0005;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70329644 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.6127;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70329761 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.777;LDAF=0.0024;AVGPOST=0.9982;RSQ=0.6944;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70329857 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.455;LDAF=0.0025;AVGPOST=0.9978;RSQ=0.6371;ERATE=0.0005;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70329911 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0189;AVGPOST=0.9992;RSQ=0.9810;ERATE=0.0004;THETA=0.0005;AC=41;AN=2184 GT:DS:GL:BD 0.01877289 0 1 70329983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9979;RSQ=0.7903;ERATE=0.0003;THETA=0.0004;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70330109 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.866;LDAF=0.0048;AVGPOST=0.9981;RSQ=0.8411;ERATE=0.0004;THETA=0.0008;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70330459 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7415;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70330532 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.983;LDAF=0.0140;AVGPOST=0.9993;RSQ=0.9791;ERATE=0.0003;THETA=0.0008;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70330642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0025;AVGPOST=0.9988;RSQ=0.8338;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70330809 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.987;LDAF=0.0231;AVGPOST=0.9984;RSQ=0.9737;ERATE=0.0003;THETA=0.0048;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70330811 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70330882 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0147;AVGPOST=0.9998;RSQ=0.9924;ERATE=0.0003;THETA=0.0011;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70330912 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.3065;AVGPOST=0.9961;RSQ=0.9938;ERATE=0.0003;THETA=0.0011;AC=668;AN=2184 GT:DS:GL:BD 0.30586082 0 1 70330958 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70330964 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.871;LDAF=0.0014;AVGPOST=0.9988;RSQ=0.6208;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331006 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6616;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331046 . T TA 43 PASS INDEL;BAVGPOST=1.000;BRSQ=0.700;LDAF=0.0021;AVGPOST=0.9974;RSQ=0.5338;ERATE=0.0005;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70331120 . T TA 16 PASS INDEL;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0044;AVGPOST=0.9964;RSQ=0.6649;ERATE=0.0005;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70331131 . AATC A 309 PASS INDEL;BAVGPOST=0.999;BRSQ=0.738;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.7802;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331163 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.660;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6075;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70331224 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5962;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331232 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.950;LDAF=0.0115;AVGPOST=0.9981;RSQ=0.9356;ERATE=0.0004;THETA=0.0011;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70331359 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.870;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70331441 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.928;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6244;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331457 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0019;AVGPOST=0.9990;RSQ=0.7639;ERATE=0.0007;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70331669 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0043;AVGPOST=0.9988;RSQ=0.8902;ERATE=0.0006;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70331687 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6960;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70331719 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0011;AVGPOST=0.9991;RSQ=0.6594;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0014;AVGPOST=0.9986;RSQ=0.6347;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70331775 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0022;AVGPOST=0.9992;RSQ=0.8401;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70331827 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7428;ERATE=0.0007;THETA=0.0015;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70331829 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0112;AVGPOST=0.9984;RSQ=0.9449;ERATE=0.0003;THETA=0.0007;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70331853 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.802;LDAF=0.0024;AVGPOST=0.9967;RSQ=0.4896;ERATE=0.0007;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70331980 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5157;ERATE=0.0006;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70332043 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0152;AVGPOST=0.9987;RSQ=0.9645;ERATE=0.0003;THETA=0.0011;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70332219 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.908;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70332252 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0023;AVGPOST=0.9991;RSQ=0.8212;ERATE=0.0005;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70332253 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0273;AVGPOST=0.9994;RSQ=0.9919;ERATE=0.0003;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70332283 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0236;AVGPOST=0.9994;RSQ=0.9929;ERATE=0.0003;THETA=0.0008;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70332335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0060;AVGPOST=0.9995;RSQ=0.9613;ERATE=0.0003;THETA=0.0004;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70332341 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0237;AVGPOST=0.9992;RSQ=0.9895;ERATE=0.0003;THETA=0.0005;AC=51;AN=2184 GT:DS:GL:BD 0.02335165 0 1 70332464 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5493;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70332721 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0228;AVGPOST=0.9979;RSQ=0.9634;ERATE=0.0003;THETA=0.0011;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70332749 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.746;LDAF=0.0006;AVGPOST=0.9989;RSQ=0.3359;ERATE=0.0003;THETA=0.0006;AC=0;AN=2184 GT:DS:GL:BD 0.00000000 0 1 70332796 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.945;LDAF=0.0073;AVGPOST=0.9988;RSQ=0.9340;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70332807 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5049;ERATE=0.0005;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70332851 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0149;AVGPOST=0.9994;RSQ=0.9814;ERATE=0.0004;THETA=0.0005;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70332857 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.830;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70333150 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.919;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8271;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333157 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.894;LDAF=0.0038;AVGPOST=0.9989;RSQ=0.8967;ERATE=0.0003;THETA=0.0015;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70333196 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.914;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4853;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333271 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.814;LDAF=0.0012;AVGPOST=0.9984;RSQ=0.5804;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333279 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5951;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333336 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.972;LDAF=0.0277;AVGPOST=0.9992;RSQ=0.9873;ERATE=0.0004;THETA=0.0005;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70333465 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0281;AVGPOST=0.9984;RSQ=0.9802;ERATE=0.0004;THETA=0.0004;AC=60;AN=2184 GT:DS:GL:BD 0.02747253 0 1 70333488 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9556;ERATE=0.0003;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70333501 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.976;LDAF=0.0154;AVGPOST=0.9995;RSQ=0.9850;ERATE=0.0004;THETA=0.0005;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70333524 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0005;AVGPOST=0.9997;RSQ=0.7664;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70333549 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.877;LDAF=0.0032;AVGPOST=0.9974;RSQ=0.6732;ERATE=0.0006;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70333578 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0271;AVGPOST=0.9988;RSQ=0.9833;ERATE=0.0003;THETA=0.0005;AC=58;AN=2184 GT:DS:GL:BD 0.02655678 0 1 70333762 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.795;LDAF=0.0073;AVGPOST=0.9936;RSQ=0.6458;ERATE=0.0009;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70334145 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.988;LDAF=0.6033;AVGPOST=0.9923;RSQ=0.9868;ERATE=0.0007;THETA=0.0004;AC=1317;AN=2184 GT:DS:GL:BD 0.60302198 1 1 70334351 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0151;AVGPOST=0.9989;RSQ=0.9696;ERATE=0.0003;THETA=0.0002;AC=32;AN=2184 GT:DS:GL:BD 0.01465201 0 1 70334384 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2209;AVGPOST=0.9946;RSQ=0.9873;ERATE=0.0006;THETA=0.0003;AC=481;AN=2184 GT:DS:GL:BD 0.22023809 0 1 70334415 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.668;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5882;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70334417 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.975;LDAF=0.8547;AVGPOST=0.9900;RSQ=0.9696;ERATE=0.0006;THETA=0.0005;AC=1866;AN=2184 GT:DS:GL:BD 0.85439563 1 1 70334749 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.975;BRSQ=0.959;LDAF=0.6631;AVGPOST=0.9823;RSQ=0.9725;ERATE=0.0007;THETA=0.0010;AC=1453;AN=2184 GT:DS:GL:BD 0.66529304 1 1 70334758 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.726;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7836;ERATE=0.0004;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70334784 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8483;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70334913 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.978;BRSQ=0.622;LDAF=0.0245;AVGPOST=0.9730;RSQ=0.5609;ERATE=0.0069;THETA=0.0009;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70334993 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.809;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6737;ERATE=0.0004;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70335010 . AC A 11207 PASS INDEL;BAVGPOST=0.997;BRSQ=0.987;LDAF=0.0700;AVGPOST=0.9967;RSQ=0.9842;ERATE=0.0004;THETA=0.0004;AC=153;AN=2184 GT:DS:GL:BD 0.07005495 0 1 70335074 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0067;AVGPOST=0.9990;RSQ=0.9321;ERATE=0.0004;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70335147 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.6756;AVGPOST=0.9975;RSQ=0.9951;ERATE=0.0006;THETA=0.0004;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 70335192 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.995;LDAF=0.6720;AVGPOST=0.9909;RSQ=0.9851;ERATE=0.0009;THETA=0.0010;AC=1466;AN=2184 GT:DS:GL:BD 0.67124540 1 1 70335220 . GAT G 5833 PASS INDEL;BAVGPOST=0.918;BRSQ=0.583;LDAF=0.1296;AVGPOST=0.8836;RSQ=0.5965;ERATE=0.0207;THETA=0.0004;AC=194;AN=2184 GT:DS:GL:BD 0.08882784 0 1 70335317 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.770;LDAF=0.0057;AVGPOST=0.9936;RSQ=0.5983;ERATE=0.0005;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70335475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.693;LDAF=0.0009;AVGPOST=0.9992;RSQ=0.5492;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70335524 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0095;AVGPOST=0.9989;RSQ=0.9464;ERATE=0.0004;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70335615 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.893;LDAF=0.0020;AVGPOST=0.9987;RSQ=0.7388;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70335732 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0018;AVGPOST=0.9974;RSQ=0.4090;ERATE=0.0005;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70335769 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.6757;AVGPOST=0.9973;RSQ=0.9948;ERATE=0.0006;THETA=0.0006;AC=1474;AN=2184 GT:DS:GL:BD 0.67490840 1 1 70335806 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.641;LDAF=0.0033;AVGPOST=0.9962;RSQ=0.5220;ERATE=0.0006;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70335832 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.816;LDAF=0.0022;AVGPOST=0.9967;RSQ=0.4144;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70335894 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.939;LDAF=0.0075;AVGPOST=0.9971;RSQ=0.8455;ERATE=0.0005;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70335982 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.877;LDAF=0.0014;AVGPOST=0.9990;RSQ=0.6951;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70336102 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6856;ERATE=0.0003;THETA=0.0012;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70336343 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.883;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4274;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70336368 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.766;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6796;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70336393 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.817;LDAF=0.0065;AVGPOST=0.9975;RSQ=0.8509;ERATE=0.0004;THETA=0.0005;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70336489 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.639;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5816;ERATE=0.0004;THETA=0.0009;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70336543 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0064;AVGPOST=0.9992;RSQ=0.9406;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70336582 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0092;AVGPOST=0.9998;RSQ=0.9880;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70336612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.707;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70336659 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0018;AVGPOST=0.9990;RSQ=0.7452;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70336724 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.839;LDAF=0.0119;AVGPOST=0.9957;RSQ=0.8602;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70336840 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7338;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70336845 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.6760;AVGPOST=0.9974;RSQ=0.9954;ERATE=0.0005;THETA=0.0005;AC=1476;AN=2184 GT:DS:GL:BD 0.67582417 1 1 70336873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5493;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70336892 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.873;LDAF=0.0189;AVGPOST=0.9951;RSQ=0.8920;ERATE=0.0005;THETA=0.0010;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70336906 . A AT 1871 PASS INDEL;BAVGPOST=0.713;BRSQ=0.528;LDAF=0.3822;AVGPOST=0.7382;RSQ=0.6163;ERATE=0.0223;THETA=0.0027;AC=826;AN=2184 GT:DS:GL:BD 0.37820512 0 1 70336927 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.989;LDAF=0.6701;AVGPOST=0.9957;RSQ=0.9923;ERATE=0.0010;THETA=0.0039;AC=1464;AN=2184 GT:DS:GL:BD 0.67032969 1 1 70336933 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8415;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70337028 . T TGGCAGG 9205 PASS INDEL;BAVGPOST=0.881;BRSQ=0.829;LDAF=0.5780;AVGPOST=0.8596;RSQ=0.8300;ERATE=0.0080;THETA=0.0013;AC=1324;AN=2184 GT:DS:GL:BD 0.60622710 1 1 70337117 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5016;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70337363 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.946;BRSQ=0.906;LDAF=0.6328;AVGPOST=0.9281;RSQ=0.8908;ERATE=0.0131;THETA=0.0008;AC=1413;AN=2184 GT:DS:GL:BD 0.64697802 1 1 70337436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.761;LDAF=0.0420;AVGPOST=0.9804;RSQ=0.8207;ERATE=0.0007;THETA=0.0017;AC=79;AN=2184 GT:DS:GL:BD 0.03617216 0 1 70337528 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.726;LDAF=0.0016;AVGPOST=0.9990;RSQ=0.7035;ERATE=0.0004;THETA=0.0047;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70337595 . TC T 18225 PASS INDEL;BAVGPOST=0.923;BRSQ=0.874;LDAF=0.6213;AVGPOST=0.9094;RSQ=0.8769;ERATE=0.0076;THETA=0.0023;AC=1404;AN=2184 GT:DS:GL:BD 0.64285713 1 1 70337696 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.970;BRSQ=0.948;LDAF=0.6715;AVGPOST=0.9741;RSQ=0.9621;ERATE=0.0011;THETA=0.0015;AC=1478;AN=2184 GT:DS:GL:BD 0.67673993 1 1 70337697 . TC T 57 PASS INDEL;BAVGPOST=1.000;BRSQ=0.790;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7028;ERATE=0.0004;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70337728 . TAGAC T 1052 PASS INDEL;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0097;AVGPOST=0.9997;RSQ=0.9863;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70338018 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5357;ERATE=0.0003;THETA=0.0053;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70338076 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.887;LDAF=0.0322;AVGPOST=0.9915;RSQ=0.8926;ERATE=0.0006;THETA=0.0004;AC=65;AN=2184 GT:DS:GL:BD 0.02976190 0 1 70338156 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.448;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6805;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70338234 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0016;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70338238 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0104;AVGPOST=0.9985;RSQ=0.9460;ERATE=0.0003;THETA=0.0008;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70338267 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.9905;AVGPOST=0.9976;RSQ=0.9018;ERATE=0.0005;THETA=0.0006;AC=2164;AN=2184 GT:DS:GL:BD 0.99084246 1 1 70338283 . G GA 6829 PASS INDEL;BAVGPOST=0.927;BRSQ=0.883;LDAF=0.6480;AVGPOST=0.9060;RSQ=0.8631;ERATE=0.0083;THETA=0.0030;AC=1434;AN=2184 GT:DS:GL:BD 0.65659338 1 1 70338318 rs35728602 A AC 51338 PASS INDEL;BAVGPOST=0.942;BRSQ=0.912;LDAF=0.6485;AVGPOST=0.9620;RSQ=0.9469;ERATE=0.0004;THETA=0.0017;AC=1436;AN=2184 GT:DS:GL:BD 0.65750915 1 1 70338321 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.786;LDAF=0.0064;AVGPOST=0.9960;RSQ=0.7646;ERATE=0.0007;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70338350 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.489;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4921;ERATE=0.0006;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70338404 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0018;AVGPOST=0.9979;RSQ=0.5250;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70338428 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.967;LDAF=0.0070;AVGPOST=0.9989;RSQ=0.9341;ERATE=0.0003;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70338550 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0072;AVGPOST=0.9985;RSQ=0.9209;ERATE=0.0003;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70338576 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.904;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.5817;ERATE=0.0003;THETA=0.0051;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70338612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9820;ERATE=0.0003;THETA=0.0005;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70338740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.795;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8667;ERATE=0.0003;THETA=0.0029;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70338779 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0096;AVGPOST=0.9999;RSQ=0.9954;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70338960 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.797;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5980;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70339007 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0147;AVGPOST=0.9985;RSQ=0.9595;ERATE=0.0004;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70339075 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.8574;AVGPOST=0.9992;RSQ=0.9971;ERATE=0.0004;THETA=0.0004;AC=1872;AN=2184 GT:DS:GL:BD 0.85714287 1 1 70339219 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70339247 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0039;AVGPOST=0.9995;RSQ=0.9496;ERATE=0.0003;THETA=0.0017;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70339489 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0206;AVGPOST=0.9983;RSQ=0.9739;ERATE=0.0004;THETA=0.0021;AC=44;AN=2184 GT:DS:GL:BD 0.02014652 0 1 70339505 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0364;AVGPOST=0.9975;RSQ=0.9751;ERATE=0.0003;THETA=0.0014;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70339593 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.970;LDAF=0.0203;AVGPOST=0.9963;RSQ=0.9390;ERATE=0.0003;THETA=0.0033;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70339647 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8803;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70339739 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.689;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5632;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70339740 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0168;AVGPOST=0.9993;RSQ=0.9823;ERATE=0.0003;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70339778 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.915;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7494;ERATE=0.0003;THETA=0.0064;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70339881 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9953;ERATE=0.0004;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 70339978 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0024;AVGPOST=0.9972;RSQ=0.6024;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70339989 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.986;LDAF=0.8278;AVGPOST=0.9970;RSQ=0.9924;ERATE=0.0004;THETA=0.0006;AC=1807;AN=2184 GT:DS:GL:BD 0.82738096 1 1 70340140 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.779;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70340171 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0303;AVGPOST=0.9997;RSQ=0.9958;ERATE=0.0003;THETA=0.0006;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 70340175 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0038;AVGPOST=0.9998;RSQ=0.9710;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70340290 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.0439;AVGPOST=0.9986;RSQ=0.9872;ERATE=0.0003;THETA=0.0005;AC=97;AN=2184 GT:DS:GL:BD 0.04441392 0 1 70340299 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0024;AVGPOST=0.9989;RSQ=0.8249;ERATE=0.0003;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70340377 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0042;AVGPOST=0.9970;RSQ=0.7077;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70340408 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0311;AVGPOST=0.9999;RSQ=0.9986;ERATE=0.0003;THETA=0.0004;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70340478 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70340484 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0009;AVGPOST=0.9999;RSQ=0.9304;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70340511 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70340523 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0050;AVGPOST=0.9992;RSQ=0.9543;ERATE=0.0004;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70340672 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70340733 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.827;LDAF=0.0036;AVGPOST=0.9983;RSQ=0.8156;ERATE=0.0003;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70340756 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.943;LDAF=0.0064;AVGPOST=0.9988;RSQ=0.9272;ERATE=0.0003;THETA=0.0007;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70340776 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0348;AVGPOST=0.9997;RSQ=0.9961;ERATE=0.0003;THETA=0.0004;AC=76;AN=2184 GT:DS:GL:BD 0.03479854 0 1 70340841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.898;LDAF=0.0015;AVGPOST=0.9990;RSQ=0.6976;ERATE=0.0004;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70340860 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0183;AVGPOST=1.0000;RSQ=0.9989;ERATE=0.0003;THETA=0.0004;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70340863 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9586;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70340886 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70340922 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70341012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4701;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70341060 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.7814;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70341159 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0050;AVGPOST=0.9991;RSQ=0.9174;ERATE=0.0004;THETA=0.0010;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70341220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.536;LDAF=0.0016;AVGPOST=0.9981;RSQ=0.5400;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70341241 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6919;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70341247 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.980;LDAF=0.8394;AVGPOST=0.9934;RSQ=0.9837;ERATE=0.0003;THETA=0.0003;AC=1832;AN=2184 GT:DS:GL:BD 0.83882785 1 1 70341274 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5892;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70341428 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0420;AVGPOST=0.9994;RSQ=0.9936;ERATE=0.0003;THETA=0.0005;AC=92;AN=2184 GT:DS:GL:BD 0.04212454 0 1 70341452 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70341504 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0184;AVGPOST=0.9999;RSQ=0.9967;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70341589 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70341594 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.900;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.7933;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70341904 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0014;AVGPOST=1.0000;RSQ=0.9844;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70342021 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.982;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70342046 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70342119 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70342135 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0046;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70342206 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70342287 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70342313 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0183;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0006;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70342322 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8194;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70342406 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0074;AVGPOST=0.9999;RSQ=0.9940;ERATE=0.0003;THETA=0.0013;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70342468 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0360;AVGPOST=0.9993;RSQ=0.9927;ERATE=0.0003;THETA=0.0009;AC=78;AN=2184 GT:DS:GL:BD 0.03571429 0 1 70342569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0014;AVGPOST=0.9994;RSQ=0.8188;ERATE=0.0003;THETA=0.0053;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70342599 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.905;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9024;ERATE=0.0005;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70342724 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.969;LDAF=0.0156;AVGPOST=0.9973;RSQ=0.9254;ERATE=0.0005;THETA=0.0021;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70342775 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.973;LDAF=0.0068;AVGPOST=0.9973;RSQ=0.8652;ERATE=0.0005;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70342797 . A AC 220 PASS INDEL;BAVGPOST=0.992;BRSQ=0.650;LDAF=0.0118;AVGPOST=0.9918;RSQ=0.7123;ERATE=0.0007;THETA=0.0006;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70342926 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.772;LDAF=0.0182;AVGPOST=0.9937;RSQ=0.8626;ERATE=0.0007;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70342927 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0510;AVGPOST=0.9989;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 70343171 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0046;AVGPOST=0.9998;RSQ=0.9806;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70343255 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0377;AVGPOST=0.9995;RSQ=0.9941;ERATE=0.0004;THETA=0.0008;AC=82;AN=2184 GT:DS:GL:BD 0.03754579 0 1 70343297 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.986;LDAF=0.8174;AVGPOST=0.9933;RSQ=0.9843;ERATE=0.0004;THETA=0.0005;AC=1784;AN=2184 GT:DS:GL:BD 0.81684983 1 1 70343322 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9359;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70343350 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0408;AVGPOST=0.9995;RSQ=0.9945;ERATE=0.0003;THETA=0.0006;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 70343392 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6182;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70343531 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.683;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5377;ERATE=0.0004;THETA=0.0013;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70343557 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.752;LDAF=0.0036;AVGPOST=0.9973;RSQ=0.6787;ERATE=0.0015;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70343565 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.684;LDAF=0.0027;AVGPOST=0.9974;RSQ=0.6048;ERATE=0.0015;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70343568 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.940;LDAF=0.0491;AVGPOST=0.9960;RSQ=0.9648;ERATE=0.0007;THETA=0.0003;AC=105;AN=2184 GT:DS:GL:BD 0.04807692 0 1 70343759 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.543;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5736;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70343794 . GACAA G 27 PASS INDEL;BAVGPOST=1.000;BRSQ=0.852;LDAF=0.0024;AVGPOST=0.9983;RSQ=0.6773;ERATE=0.0009;THETA=0.0007;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70343845 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0032;AVGPOST=0.9992;RSQ=0.9080;ERATE=0.0003;THETA=0.0007;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70343896 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0035;AVGPOST=0.9995;RSQ=0.9316;ERATE=0.0003;THETA=0.0013;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70343907 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0472;AVGPOST=0.9996;RSQ=0.9963;ERATE=0.0004;THETA=0.0003;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70343970 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0008;AVGPOST=0.9997;RSQ=0.8692;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70344032 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.857;LDAF=0.0024;AVGPOST=0.9976;RSQ=0.5459;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70344119 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0546;AVGPOST=0.9995;RSQ=0.9955;ERATE=0.0003;THETA=0.0003;AC=119;AN=2184 GT:DS:GL:BD 0.05448718 0 1 70344153 . A AT 58 PASS INDEL;BAVGPOST=0.990;BRSQ=0.492;LDAF=0.0151;AVGPOST=0.9811;RSQ=0.5211;ERATE=0.0042;THETA=0.0005;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70344194 . A AT 104 PASS INDEL;BAVGPOST=0.990;BRSQ=0.546;LDAF=0.0216;AVGPOST=0.9725;RSQ=0.5030;ERATE=0.0044;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70344447 . GT G 44 PASS INDEL;BAVGPOST=1.000;BRSQ=0.881;LDAF=0.0009;AVGPOST=0.9993;RSQ=0.7031;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70344476 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.652;LDAF=0.0012;AVGPOST=0.9986;RSQ=0.4861;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70344494 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.846;LDAF=0.0027;AVGPOST=0.9972;RSQ=0.6874;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70344545 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.812;LDAF=0.0033;AVGPOST=0.9989;RSQ=0.8624;ERATE=0.0005;THETA=0.0005;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70344592 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9734;AVGPOST=0.9989;RSQ=0.9855;ERATE=0.0003;THETA=0.0005;AC=2127;AN=2184 GT:DS:GL:BD 0.97390109 1 1 70344674 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.843;LDAF=0.0022;AVGPOST=0.9974;RSQ=0.5138;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70344695 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.964;LDAF=0.1332;AVGPOST=0.9895;RSQ=0.9650;ERATE=0.0007;THETA=0.0005;AC=286;AN=2184 GT:DS:GL:BD 0.13095239 0 1 70344718 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.9816;AVGPOST=0.9991;RSQ=0.9805;ERATE=0.0003;THETA=0.0013;AC=2144;AN=2184 GT:DS:GL:BD 0.98168498 1 1 70344755 . GT G 66 PASS INDEL;BAVGPOST=1.000;BRSQ=0.848;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5345;ERATE=0.0004;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70344764 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.812;LDAF=0.0120;AVGPOST=0.9962;RSQ=0.8622;ERATE=0.0005;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70344818 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9194;AVGPOST=0.9976;RSQ=0.9872;ERATE=0.0004;THETA=0.0003;AC=2008;AN=2184 GT:DS:GL:BD 0.91941392 1 1 70344841 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.990;LDAF=0.2467;AVGPOST=0.9912;RSQ=0.9832;ERATE=0.0004;THETA=0.0007;AC=538;AN=2184 GT:DS:GL:BD 0.24633700 0 1 70344846 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.9202;AVGPOST=0.9984;RSQ=0.9920;ERATE=0.0005;THETA=0.0007;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 70344865 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4625;AVGPOST=0.9909;RSQ=0.9859;ERATE=0.0007;THETA=0.0006;AC=1005;AN=2184 GT:DS:GL:BD 0.46016484 0 1 70344889 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8739;ERATE=0.0005;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70344903 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0015;AVGPOST=0.9984;RSQ=0.5687;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70344948 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.713;LDAF=0.0047;AVGPOST=0.9952;RSQ=0.6145;ERATE=0.0005;THETA=0.0022;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70345025 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0078;AVGPOST=0.9987;RSQ=0.9325;ERATE=0.0003;THETA=0.0007;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70345089 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0029;AVGPOST=0.9978;RSQ=0.6998;ERATE=0.0003;THETA=0.0009;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70345135 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.981;LDAF=0.9202;AVGPOST=0.9981;RSQ=0.9889;ERATE=0.0005;THETA=0.0004;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 70345180 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.9188;AVGPOST=0.9976;RSQ=0.9875;ERATE=0.0003;THETA=0.0006;AC=2007;AN=2184 GT:DS:GL:BD 0.91895604 1 1 70345264 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.709;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7073;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70345288 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.670;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8251;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70345339 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9195;AVGPOST=0.9972;RSQ=0.9846;ERATE=0.0007;THETA=0.0003;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 70345367 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.913;LDAF=0.0017;AVGPOST=0.9989;RSQ=0.7327;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70345503 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0089;AVGPOST=0.9995;RSQ=0.9769;ERATE=0.0004;THETA=0.0003;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70345534 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.2853;AVGPOST=0.9959;RSQ=0.9917;ERATE=0.0005;THETA=0.0003;AC=621;AN=2184 GT:DS:GL:BD 0.28434065 0 1 70345565 . GAC G 121 PASS INDEL;BAVGPOST=1.000;BRSQ=0.851;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4641;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70345731 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.0249;AVGPOST=0.9984;RSQ=0.9727;ERATE=0.0003;THETA=0.0002;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70345799 rs4046211 A AGTG 140735 PASS INDEL;BAVGPOST=0.998;BRSQ=0.989;LDAF=0.9131;AVGPOST=0.9866;RSQ=0.9326;ERATE=0.0038;THETA=0.0006;AC=2002;AN=2184 GT:DS:GL:BD 0.91666669 1 1 70345908 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.9201;AVGPOST=0.9984;RSQ=0.9910;ERATE=0.0003;THETA=0.0001;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 70345967 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70345989 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.995;LDAF=0.9185;AVGPOST=0.9978;RSQ=0.9881;ERATE=0.0007;THETA=0.0004;AC=2006;AN=2184 GT:DS:GL:BD 0.91849816 1 1 70346090 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.868;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6533;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70346105 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9206;AVGPOST=0.9994;RSQ=0.9970;ERATE=0.0003;THETA=0.0002;AC=2010;AN=2184 GT:DS:GL:BD 0.92032969 1 1 70346212 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7435;ERATE=0.0006;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70346221 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.823;LDAF=0.0010;AVGPOST=0.9990;RSQ=0.5420;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70346248 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.645;LDAF=0.0014;AVGPOST=0.9981;RSQ=0.5795;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70346329 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.807;LDAF=0.0011;AVGPOST=0.9985;RSQ=0.5142;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70346378 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.980;LDAF=0.0140;AVGPOST=0.9995;RSQ=0.9821;ERATE=0.0003;THETA=0.0010;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70346463 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.5995;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70346637 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0512;AVGPOST=0.9982;RSQ=0.9870;ERATE=0.0003;THETA=0.0002;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 70346671 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.962;LDAF=0.0009;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70346710 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.978;LDAF=0.1130;AVGPOST=0.9902;RSQ=0.9639;ERATE=0.0008;THETA=0.0004;AC=246;AN=2184 GT:DS:GL:BD 0.11263736 0 1 70346712 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0037;AVGPOST=0.9996;RSQ=0.9482;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70346754 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7318;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70346791 . T TGC 4460 PASS INDEL;BAVGPOST=0.908;BRSQ=0.634;LDAF=0.1585;AVGPOST=0.8730;RSQ=0.6356;ERATE=0.0166;THETA=0.0005;AC=273;AN=2184 GT:DS:GL:BD 0.12500000 0 1 70346843 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.988;LDAF=0.0481;AVGPOST=0.9952;RSQ=0.9554;ERATE=0.0004;THETA=0.0004;AC=103;AN=2184 GT:DS:GL:BD 0.04716117 0 1 70346854 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9188;AVGPOST=0.9971;RSQ=0.9836;ERATE=0.0009;THETA=0.0005;AC=2008;AN=2184 GT:DS:GL:BD 0.91941392 1 1 70346871 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.9742;AVGPOST=0.9995;RSQ=0.9943;ERATE=0.0003;THETA=0.0002;AC=2128;AN=2184 GT:DS:GL:BD 0.97435898 1 1 70346920 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.928;LDAF=0.0114;AVGPOST=0.9957;RSQ=0.8642;ERATE=0.0003;THETA=0.0006;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70346947 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.879;LDAF=0.0049;AVGPOST=0.9992;RSQ=0.9260;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70347023 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0007;AVGPOST=0.9991;RSQ=0.4460;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70347097 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.951;LDAF=0.1232;AVGPOST=0.9926;RSQ=0.9756;ERATE=0.0006;THETA=0.0005;AC=269;AN=2184 GT:DS:GL:BD 0.12316850 0 1 70347170 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0038;AVGPOST=0.9977;RSQ=0.7438;ERATE=0.0010;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70347173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.946;LDAF=0.1556;AVGPOST=0.9926;RSQ=0.9790;ERATE=0.0007;THETA=0.0004;AC=342;AN=2184 GT:DS:GL:BD 0.15659341 0 1 70347198 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.717;LDAF=0.9566;AVGPOST=0.9592;RSQ=0.6341;ERATE=0.0066;THETA=0.0008;AC=2123;AN=2184 GT:DS:GL:BD 0.97206962 1 1 70347230 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.986;LDAF=0.9125;AVGPOST=0.9874;RSQ=0.9399;ERATE=0.0029;THETA=0.0007;AC=2001;AN=2184 GT:DS:GL:BD 0.91620880 1 1 70347329 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.978;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0030;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70347395 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0033;AVGPOST=0.9997;RSQ=0.9553;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70347399 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0014;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70347446 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9682;ERATE=0.0010;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70347480 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2587;AVGPOST=0.9997;RSQ=0.9993;ERATE=0.0003;THETA=0.0002;AC=566;AN=2184 GT:DS:GL:BD 0.25915751 0 1 70347539 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0081;AVGPOST=0.9995;RSQ=0.9738;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70347545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70347612 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0004;AVGPOST=0.9999;RSQ=0.8999;ERATE=0.0003;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70347618 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0076;AVGPOST=0.9996;RSQ=0.9833;ERATE=0.0004;THETA=0.0002;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70347706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0004;AVGPOST=1.0000;RSQ=0.9500;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70347762 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4677;AVGPOST=0.9990;RSQ=0.9986;ERATE=0.0003;THETA=0.0003;AC=1019;AN=2184 GT:DS:GL:BD 0.46657509 0 1 70347810 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0035;AVGPOST=0.9987;RSQ=0.8749;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70347849 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7183;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70347922 . TTTTTG T 29739 PASS INDEL;BAVGPOST=0.896;BRSQ=0.795;LDAF=0.6612;AVGPOST=0.9002;RSQ=0.8345;ERATE=0.0009;THETA=0.0002;AC=1488;AN=2184 GT:DS:GL:BD 0.68131870 1 1 70348020 . TTTTG T 28932 PASS INDEL;BAVGPOST=0.895;BRSQ=0.794;LDAF=0.6566;AVGPOST=0.9008;RSQ=0.8378;ERATE=0.0006;THETA=0.0006;AC=1481;AN=2184 GT:DS:GL:BD 0.67811358 1 1 70348021 . TTTTTTG T 41698 PASS INDEL;BAVGPOST=0.883;BRSQ=0.696;LDAF=0.7575;AVGPOST=0.8349;RSQ=0.6649;ERATE=0.0117;THETA=0.0003;AC=1749;AN=2184 GT:DS:GL:BD 0.80082417 1 1 70348026 . TTTTG T 35051 PASS INDEL;BAVGPOST=0.885;BRSQ=0.702;LDAF=0.7826;AVGPOST=0.8767;RSQ=0.7346;ERATE=0.0049;THETA=0.0003;AC=1772;AN=2184 GT:DS:GL:BD 0.81135529 1 1 70348028 . TG T 26372 PASS INDEL;BAVGPOST=0.918;BRSQ=0.721;LDAF=0.8449;AVGPOST=0.9030;RSQ=0.7404;ERATE=0.0041;THETA=0.0004;AC=1901;AN=2184 GT:DS:GL:BD 0.87042123 1 1 70348031 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.643;LDAF=0.0025;AVGPOST=0.9973;RSQ=0.6053;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70348083 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.1826;AVGPOST=0.9978;RSQ=0.9947;ERATE=0.0004;THETA=0.0003;AC=398;AN=2184 GT:DS:GL:BD 0.18223444 0 1 70348084 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.718;LDAF=0.0062;AVGPOST=0.9941;RSQ=0.6449;ERATE=0.0006;THETA=0.0004;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70348144 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8413;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70348442 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.663;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5826;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70348509 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0036;AVGPOST=0.9979;RSQ=0.7588;ERATE=0.0008;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70348512 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2849;AVGPOST=0.9947;RSQ=0.9905;ERATE=0.0004;THETA=0.0003;AC=620;AN=2184 GT:DS:GL:BD 0.28388280 0 1 70348514 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.807;LDAF=0.0027;AVGPOST=0.9981;RSQ=0.7526;ERATE=0.0003;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70348554 . T TA 300 PASS INDEL;BAVGPOST=0.999;BRSQ=0.931;LDAF=0.0061;AVGPOST=0.9977;RSQ=0.8517;ERATE=0.0003;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70348595 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.930;LDAF=0.0061;AVGPOST=0.9976;RSQ=0.8645;ERATE=0.0003;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70348600 . G GT 334 PASS INDEL;BAVGPOST=0.999;BRSQ=0.895;LDAF=0.0083;AVGPOST=0.9940;RSQ=0.7302;ERATE=0.0008;THETA=0.0003;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70348600 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9196;AVGPOST=0.9979;RSQ=0.9900;ERATE=0.0004;THETA=0.0007;AC=2009;AN=2184 GT:DS:GL:BD 0.91987181 1 1 70348714 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9205;AVGPOST=0.9990;RSQ=0.9954;ERATE=0.0003;THETA=0.0003;AC=2011;AN=2184 GT:DS:GL:BD 0.92078757 1 1 70348840 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.933;LDAF=0.0081;AVGPOST=0.9979;RSQ=0.8858;ERATE=0.0006;THETA=0.0004;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70348867 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4610;AVGPOST=0.9968;RSQ=0.9950;ERATE=0.0007;THETA=0.0004;AC=1004;AN=2184 GT:DS:GL:BD 0.45970696 0 1 70348989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.6876;ERATE=0.0005;THETA=0.0021;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70349044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.9205;AVGPOST=0.9992;RSQ=0.9957;ERATE=0.0004;THETA=0.0003;AC=2011;AN=2184 GT:DS:GL:BD 0.92078757 1 1 70349073 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.918;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.5768;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70349239 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.9201;AVGPOST=0.9979;RSQ=0.9883;ERATE=0.0006;THETA=0.0003;AC=2011;AN=2184 GT:DS:GL:BD 0.92078757 1 1 70349253 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0087;AVGPOST=1.0000;RSQ=0.9977;ERATE=0.0003;THETA=0.0004;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70349256 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0512;AVGPOST=0.9990;RSQ=0.9936;ERATE=0.0003;THETA=0.0011;AC=111;AN=2184 GT:DS:GL:BD 0.05082418 0 1 70349307 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6008;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70349335 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0065;AVGPOST=0.9985;RSQ=0.9133;ERATE=0.0006;THETA=0.0007;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70349352 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.847;LDAF=0.0046;AVGPOST=0.9982;RSQ=0.8320;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70349368 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.745;LDAF=0.0012;AVGPOST=0.9989;RSQ=0.5773;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70349474 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.876;LDAF=0.0017;AVGPOST=0.9992;RSQ=0.7966;ERATE=0.0003;THETA=0.0002;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70349500 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0539;AVGPOST=0.9991;RSQ=0.9930;ERATE=0.0004;THETA=0.0007;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 70349578 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.2601;AVGPOST=0.9969;RSQ=0.9936;ERATE=0.0008;THETA=0.0003;AC=568;AN=2184 GT:DS:GL:BD 0.26007327 0 1 70349601 . T TA 158 PASS INDEL;BAVGPOST=0.997;BRSQ=0.623;LDAF=0.0038;AVGPOST=0.9970;RSQ=0.6754;ERATE=0.0004;THETA=0.0004;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70349693 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5810;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70350020 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0165;AVGPOST=0.9998;RSQ=0.9936;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70350030 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.819;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5470;ERATE=0.0005;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70350139 rs34930684 C CA 13036 PASS INDEL;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1666;AVGPOST=0.9984;RSQ=0.9957;ERATE=0.0005;THETA=0.0004;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 70350173 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0027;AVGPOST=0.9991;RSQ=0.8433;ERATE=0.0004;THETA=0.0006;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70350204 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0168;AVGPOST=0.9993;RSQ=0.9814;ERATE=0.0004;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70350253 . GA G 84 PASS INDEL;BAVGPOST=0.973;BRSQ=0.394;LDAF=0.0391;AVGPOST=0.9498;RSQ=0.4812;ERATE=0.0062;THETA=0.0015;AC=50;AN=2184 GT:DS:GL:BD 0.02289377 0 1 70350486 rs10552884 AT A 25196 PASS INDEL;BAVGPOST=0.965;BRSQ=0.935;LDAF=0.5944;AVGPOST=0.9291;RSQ=0.8913;ERATE=0.0137;THETA=0.0004;AC=1307;AN=2184 GT:DS:GL:BD 0.59844321 1 1 70350487 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5799;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70350716 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1615;AVGPOST=0.9989;RSQ=0.9974;ERATE=0.0004;THETA=0.0006;AC=353;AN=2184 GT:DS:GL:BD 0.16163003 0 1 70350725 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0048;AVGPOST=0.9995;RSQ=0.9553;ERATE=0.0003;THETA=0.0005;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70350762 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.964;LDAF=0.0165;AVGPOST=0.9996;RSQ=0.9897;ERATE=0.0003;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70350813 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0164;AVGPOST=0.9999;RSQ=0.9975;ERATE=0.0003;THETA=0.0003;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70350939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1665;AVGPOST=0.9992;RSQ=0.9979;ERATE=0.0004;THETA=0.0008;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 70350941 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1664;AVGPOST=0.9994;RSQ=0.9983;ERATE=0.0005;THETA=0.0009;AC=364;AN=2184 GT:DS:GL:BD 0.16666667 0 1 70351025 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0040;AVGPOST=0.9991;RSQ=0.9191;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70351026 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0166;AVGPOST=0.9997;RSQ=0.9926;ERATE=0.0003;THETA=0.0005;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70351058 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0015;AVGPOST=0.9983;RSQ=0.5578;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70351075 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5559;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70351265 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9993;RSQ=0.9440;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70351288 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.993;LDAF=0.1825;AVGPOST=0.9981;RSQ=0.9954;ERATE=0.0004;THETA=0.0004;AC=400;AN=2184 GT:DS:GL:BD 0.18315019 0 1 70351307 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0062;AVGPOST=0.9977;RSQ=0.8771;ERATE=0.0004;THETA=0.0003;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70351345 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.970;LDAF=0.0029;AVGPOST=0.9984;RSQ=0.7784;ERATE=0.0004;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70351358 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0180;AVGPOST=0.9969;RSQ=0.9280;ERATE=0.0005;THETA=0.0006;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70351434 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0101;AVGPOST=0.9939;RSQ=0.7565;ERATE=0.0006;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70351535 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0024;AVGPOST=0.9998;RSQ=0.9643;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70351790 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.5014;AVGPOST=0.9968;RSQ=0.9944;ERATE=0.0005;THETA=0.0013;AC=1094;AN=2184 GT:DS:GL:BD 0.50091577 1 1 70351882 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0170;AVGPOST=0.9996;RSQ=0.9903;ERATE=0.0004;THETA=0.0003;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70351928 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.840;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70351998 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.888;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6657;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70352139 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.821;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70352144 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9870;ERATE=0.0003;THETA=0.0004;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70352245 . T TTG 35839 PASS INDEL;BAVGPOST=0.964;BRSQ=0.927;LDAF=0.4216;AVGPOST=0.9502;RSQ=0.9209;ERATE=0.0096;THETA=0.0007;AC=934;AN=2184 GT:DS:GL:BD 0.42765567 0 1 70352385 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0274;AVGPOST=0.9992;RSQ=0.9881;ERATE=0.0004;THETA=0.0004;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70352536 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.729;LDAF=0.0061;AVGPOST=0.9960;RSQ=0.7186;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70352555 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0271;AVGPOST=0.9995;RSQ=0.9922;ERATE=0.0003;THETA=0.0003;AC=59;AN=2184 GT:DS:GL:BD 0.02701465 0 1 70352648 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0053;AVGPOST=0.9990;RSQ=0.9320;ERATE=0.0004;THETA=0.0006;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70352653 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.854;LDAF=0.0019;AVGPOST=0.9989;RSQ=0.7292;ERATE=0.0006;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70352688 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.648;LDAF=0.0018;AVGPOST=0.9999;RSQ=0.9638;ERATE=0.0003;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70352738 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.944;BRSQ=0.896;LDAF=0.7134;AVGPOST=0.9440;RSQ=0.9112;ERATE=0.0046;THETA=0.0011;AC=1593;AN=2184 GT:DS:GL:BD 0.72939563 1 1 70352824 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.691;LDAF=0.0081;AVGPOST=0.9931;RSQ=0.6917;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70352901 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0637;AVGPOST=0.9982;RSQ=0.9860;ERATE=0.0007;THETA=0.0011;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 70352908 rs111277410 TGTGTGTGCGCGC T 56051 PASS INDEL;BAVGPOST=0.881;BRSQ=0.779;LDAF=0.5419;AVGPOST=0.8529;RSQ=0.7575;ERATE=0.0280;THETA=0.0005;AC=1205;AN=2184 GT:DS:GL:BD 0.55173993 1 1 70352990 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0044;AVGPOST=0.9995;RSQ=0.9422;ERATE=0.0003;THETA=0.0024;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70353341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.869;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6689;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70353356 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.975;LDAF=0.4987;AVGPOST=0.9888;RSQ=0.9815;ERATE=0.0008;THETA=0.0017;AC=1096;AN=2184 GT:DS:GL:BD 0.50183153 1 1 70353394 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.910;BRSQ=0.853;LDAF=0.5176;AVGPOST=0.8906;RSQ=0.8515;ERATE=0.0418;THETA=0.0004;AC=1152;AN=2184 GT:DS:GL:BD 0.52747256 1 1 70353422 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.739;LDAF=0.0067;AVGPOST=0.9942;RSQ=0.6758;ERATE=0.0006;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70353447 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.590;LDAF=0.0097;AVGPOST=0.9913;RSQ=0.6445;ERATE=0.0008;THETA=0.0020;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70353751 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.959;LDAF=0.0035;AVGPOST=0.9977;RSQ=0.7263;ERATE=0.0004;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70353762 rs71750897 C CA 115 PASS INDEL;BAVGPOST=0.747;BRSQ=0.136;LDAF=0.2144;AVGPOST=0.7217;RSQ=0.3284;ERATE=0.0151;THETA=0.0008;AC=251;AN=2184 GT:DS:GL:BD 0.11492674 0 1 70353790 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.804;LDAF=0.0043;AVGPOST=0.9977;RSQ=0.7952;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70353827 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0051;AVGPOST=0.9989;RSQ=0.9172;ERATE=0.0004;THETA=0.0015;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70353882 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0043;AVGPOST=0.9987;RSQ=0.8754;ERATE=0.0003;THETA=0.0006;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70354039 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.825;LDAF=0.0016;AVGPOST=0.9987;RSQ=0.6184;ERATE=0.0005;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70354040 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.883;LDAF=0.0095;AVGPOST=0.9972;RSQ=0.8874;ERATE=0.0003;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70354089 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.969;LDAF=0.0068;AVGPOST=0.9989;RSQ=0.9213;ERATE=0.0003;THETA=0.0002;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70354120 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0063;AVGPOST=0.9997;RSQ=0.9768;ERATE=0.0003;THETA=0.0006;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70354126 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.665;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.4595;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354174 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.879;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.5411;ERATE=0.0004;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354278 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0083;AVGPOST=0.9998;RSQ=0.9894;ERATE=0.0003;THETA=0.0019;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70354332 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9988;RSQ=0.5098;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354344 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.695;LDAF=0.0021;AVGPOST=0.9965;RSQ=0.2938;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354374 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.584;LDAF=0.0100;AVGPOST=0.9909;RSQ=0.6258;ERATE=0.0006;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70354528 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.914;LDAF=0.0079;AVGPOST=0.9966;RSQ=0.8242;ERATE=0.0006;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70354647 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.985;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7645;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354740 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0733;AVGPOST=0.9992;RSQ=0.9955;ERATE=0.0003;THETA=0.0002;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70354792 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7113;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70354822 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0729;AVGPOST=0.9991;RSQ=0.9947;ERATE=0.0003;THETA=0.0002;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70354868 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5096;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70354974 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0733;AVGPOST=0.9995;RSQ=0.9972;ERATE=0.0004;THETA=0.0002;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70354999 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0736;AVGPOST=0.9997;RSQ=0.9982;ERATE=0.0003;THETA=0.0003;AC=161;AN=2184 GT:DS:GL:BD 0.07371795 0 1 70355049 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.925;LDAF=0.0004;AVGPOST=0.9997;RSQ=0.6674;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.855;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.7029;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355186 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.7942;AVGPOST=0.9981;RSQ=0.9957;ERATE=0.0006;THETA=0.0006;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 70355187 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.750;LDAF=0.0007;AVGPOST=0.9993;RSQ=0.5558;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355265 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1651;AVGPOST=0.9988;RSQ=0.9966;ERATE=0.0005;THETA=0.0010;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 70355276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0022;AVGPOST=0.9973;RSQ=0.6119;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70355337 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.919;LDAF=0.0066;AVGPOST=0.9977;RSQ=0.8648;ERATE=0.0007;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70355385 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.0732;AVGPOST=0.9995;RSQ=0.9970;ERATE=0.0004;THETA=0.0004;AC=160;AN=2184 GT:DS:GL:BD 0.07326008 0 1 70355414 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.832;LDAF=0.0010;AVGPOST=0.9992;RSQ=0.6613;ERATE=0.0005;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355505 . GC G 544 PASS INDEL;BAVGPOST=0.999;BRSQ=0.824;LDAF=0.0054;AVGPOST=0.9973;RSQ=0.7976;ERATE=0.0010;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70355513 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355518 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5794;ERATE=0.0003;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355541 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.897;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7756;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70355546 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.987;BRSQ=0.530;LDAF=0.0212;AVGPOST=0.9736;RSQ=0.4874;ERATE=0.0064;THETA=0.0002;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70355672 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.880;LDAF=0.0098;AVGPOST=0.9958;RSQ=0.8613;ERATE=0.0005;THETA=0.0002;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70355706 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.866;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7368;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70355717 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.957;LDAF=0.0115;AVGPOST=0.9965;RSQ=0.8765;ERATE=0.0004;THETA=0.0003;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70355776 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0732;AVGPOST=0.9986;RSQ=0.9923;ERATE=0.0004;THETA=0.0002;AC=159;AN=2184 GT:DS:GL:BD 0.07280220 0 1 70355797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.958;LDAF=0.0185;AVGPOST=0.9950;RSQ=0.8965;ERATE=0.0009;THETA=0.0004;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70355876 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0021;AVGPOST=0.9968;RSQ=0.4312;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70356075 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0040;AVGPOST=0.9989;RSQ=0.8852;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70356187 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.6290;AVGPOST=0.9974;RSQ=0.9967;ERATE=0.0005;THETA=0.0003;AC=1372;AN=2184 GT:DS:GL:BD 0.62820512 1 1 70356196 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0099;AVGPOST=0.9972;RSQ=0.8877;ERATE=0.0007;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70356311 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.5309;ERATE=0.0004;THETA=0.0001;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70356313 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.961;LDAF=0.0036;AVGPOST=0.9990;RSQ=0.8851;ERATE=0.0009;THETA=0.0002;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70356328 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6213;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70356590 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0048;AVGPOST=0.9977;RSQ=0.8328;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70356594 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3410;AVGPOST=0.9984;RSQ=0.9971;ERATE=0.0005;THETA=0.0004;AC=745;AN=2184 GT:DS:GL:BD 0.34111720 0 1 70356623 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.907;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7534;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70356657 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0009;AVGPOST=0.9996;RSQ=0.8260;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70356706 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.4556;AVGPOST=0.9977;RSQ=0.9966;ERATE=0.0005;THETA=0.0004;AC=997;AN=2184 GT:DS:GL:BD 0.45650184 0 1 70356710 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.849;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9336;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70356712 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0097;AVGPOST=0.9996;RSQ=0.9820;ERATE=0.0003;THETA=0.0002;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70356835 rs76841574 CA C 19704 PASS INDEL;BAVGPOST=0.999;BRSQ=0.996;LDAF=0.1812;AVGPOST=0.9955;RSQ=0.9884;ERATE=0.0004;THETA=0.0002;AC=395;AN=2184 GT:DS:GL:BD 0.18086080 0 1 70356852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6721;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70356913 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1655;AVGPOST=0.9976;RSQ=0.9941;ERATE=0.0005;THETA=0.0006;AC=360;AN=2184 GT:DS:GL:BD 0.16483517 0 1 70356934 . GCA G 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.812;LDAF=0.0017;AVGPOST=0.9977;RSQ=0.4336;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70356937 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.9900;AVGPOST=0.9997;RSQ=0.9874;ERATE=0.0003;THETA=0.0019;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 70356989 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1651;AVGPOST=0.9990;RSQ=0.9971;ERATE=0.0004;THETA=0.0006;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 70357097 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.912;LDAF=0.0014;AVGPOST=0.9995;RSQ=0.8579;ERATE=0.0009;THETA=0.0013;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70357115 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.997;LDAF=0.5125;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0006;AC=1120;AN=2184 GT:DS:GL:BD 0.51282054 1 1 70357156 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70357178 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.986;LDAF=0.9899;AVGPOST=0.9999;RSQ=0.9956;ERATE=0.0003;THETA=0.0008;AC=2162;AN=2184 GT:DS:GL:BD 0.98992676 1 1 70357244 . TC T 440 PASS INDEL;BAVGPOST=0.998;BRSQ=0.853;LDAF=0.0065;AVGPOST=0.9957;RSQ=0.7642;ERATE=0.0004;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70357286 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.994;LDAF=0.1659;AVGPOST=0.9940;RSQ=0.9852;ERATE=0.0006;THETA=0.0003;AC=361;AN=2184 GT:DS:GL:BD 0.16529304 0 1 70357432 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.987;LDAF=0.3912;AVGPOST=0.9948;RSQ=0.9910;ERATE=0.0007;THETA=0.0005;AC=855;AN=2184 GT:DS:GL:BD 0.39148352 0 1 70357445 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.678;LDAF=0.0019;AVGPOST=0.9976;RSQ=0.5116;ERATE=0.0005;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70357577 . C CT 61 PASS INDEL;BAVGPOST=0.886;BRSQ=0.045;LDAF=0.1646;AVGPOST=0.7638;RSQ=0.3110;ERATE=0.0107;THETA=0.0004;AC=173;AN=2184 GT:DS:GL:BD 0.07921246 0 1 70357906 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70358060 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.982;LDAF=0.0037;AVGPOST=0.9989;RSQ=0.8798;ERATE=0.0005;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70358164 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.913;LDAF=0.0138;AVGPOST=0.9968;RSQ=0.9041;ERATE=0.0003;THETA=0.0056;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70358205 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0101;AVGPOST=0.9988;RSQ=0.9432;ERATE=0.0005;THETA=0.0003;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70358420 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0198;AVGPOST=0.9988;RSQ=0.9819;ERATE=0.0003;THETA=0.0003;AC=43;AN=2184 GT:DS:GL:BD 0.01968865 0 1 70358421 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.810;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0021;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70358475 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.944;LDAF=0.9974;AVGPOST=0.9990;RSQ=0.8385;ERATE=0.0008;THETA=0.0027;AC=2179;AN=2184 GT:DS:GL:BD 0.99771065 1 1 70358612 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7160;ERATE=0.0004;THETA=0.0016;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70358991 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.887;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70359005 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.993;LDAF=0.3171;AVGPOST=0.9946;RSQ=0.9918;ERATE=0.0006;THETA=0.0014;AC=693;AN=2184 GT:DS:GL:BD 0.31730768 0 1 70359018 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5048;ERATE=0.0005;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70359026 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9135;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70359081 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0079;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70359219 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.775;LDAF=0.0041;AVGPOST=0.9973;RSQ=0.7665;ERATE=0.0003;THETA=0.0050;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70359243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.930;LDAF=0.0011;AVGPOST=0.9997;RSQ=0.8780;ERATE=0.0004;THETA=0.0011;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70359256 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0084;AVGPOST=0.9995;RSQ=0.9755;ERATE=0.0003;THETA=0.0007;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70359348 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0006;AVGPOST=0.9997;RSQ=0.7844;ERATE=0.0004;THETA=0.0023;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70359349 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7710;ERATE=0.0005;THETA=0.0055;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70359390 . A AT 139 PASS INDEL;BAVGPOST=0.998;BRSQ=0.756;LDAF=0.0031;AVGPOST=0.9975;RSQ=0.6959;ERATE=0.0004;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70359575 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.768;LDAF=0.0017;AVGPOST=0.9984;RSQ=0.6303;ERATE=0.0005;THETA=0.0104;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70359663 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0160;AVGPOST=0.9979;RSQ=0.9413;ERATE=0.0004;THETA=0.0031;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70359673 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.985;LDAF=0.3364;AVGPOST=0.9794;RSQ=0.9671;ERATE=0.0018;THETA=0.0010;AC=726;AN=2184 GT:DS:GL:BD 0.33241758 0 1 70359708 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.741;LDAF=0.0015;AVGPOST=0.9985;RSQ=0.5957;ERATE=0.0006;THETA=0.0096;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70359714 . T TC 33597 PASS INDEL;BAVGPOST=0.998;BRSQ=0.983;LDAF=0.9618;AVGPOST=0.9979;RSQ=0.9782;ERATE=0.0005;THETA=0.0002;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 70359827 rs11447921 C CT 100251 PASS INDEL;BAVGPOST=0.998;BRSQ=0.985;LDAF=0.9619;AVGPOST=0.9983;RSQ=0.9825;ERATE=0.0004;THETA=0.0004;AC=2102;AN=2184 GT:DS:GL:BD 0.96245420 1 1 70359828 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.649;LDAF=0.0030;AVGPOST=0.9982;RSQ=0.7508;ERATE=0.0003;THETA=0.0007;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70360012 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.985;LDAF=0.0822;AVGPOST=0.9962;RSQ=0.9810;ERATE=0.0007;THETA=0.0006;AC=181;AN=2184 GT:DS:GL:BD 0.08287546 0 1 70360013 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.937;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9475;ERATE=0.0004;THETA=0.0006;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70360064 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.769;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.4547;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70360147 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.980;LDAF=0.0094;AVGPOST=0.9990;RSQ=0.9575;ERATE=0.0004;THETA=0.0004;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70360250 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0047;AVGPOST=0.9998;RSQ=0.9812;ERATE=0.0003;THETA=0.0003;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70360341 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.774;LDAF=0.0020;AVGPOST=0.9973;RSQ=0.5630;ERATE=0.0004;THETA=0.0032;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70360381 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0045;AVGPOST=0.9989;RSQ=0.8958;ERATE=0.0003;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70360384 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.844;LDAF=0.0013;AVGPOST=0.9987;RSQ=0.5954;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70360820 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0134;AVGPOST=0.9997;RSQ=0.9907;ERATE=0.0003;THETA=0.0005;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70360876 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.896;LDAF=0.0027;AVGPOST=0.9964;RSQ=0.5095;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70361030 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.8760;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70361083 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.991;LDAF=0.4694;AVGPOST=0.9904;RSQ=0.9855;ERATE=0.0030;THETA=0.0003;AC=1026;AN=2184 GT:DS:GL:BD 0.46978021 0 1 70361135 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0181;AVGPOST=0.9989;RSQ=0.9750;ERATE=0.0004;THETA=0.0003;AC=39;AN=2184 GT:DS:GL:BD 0.01785714 0 1 70361141 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0011;AVGPOST=0.9996;RSQ=0.8497;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70361181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0028;AVGPOST=0.9985;RSQ=0.8030;ERATE=0.0004;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70361223 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0043;AVGPOST=0.9984;RSQ=0.8551;ERATE=0.0004;THETA=0.0026;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70361255 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.950;LDAF=0.0454;AVGPOST=0.9931;RSQ=0.9430;ERATE=0.0060;THETA=0.0005;AC=96;AN=2184 GT:DS:GL:BD 0.04395605 0 1 70361300 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0066;AVGPOST=0.9993;RSQ=0.9486;ERATE=0.0005;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70361339 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0146;AVGPOST=0.9979;RSQ=0.9523;ERATE=0.0003;THETA=0.0007;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70361418 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.983;LDAF=0.5096;AVGPOST=0.9819;RSQ=0.9748;ERATE=0.0097;THETA=0.0008;AC=1112;AN=2184 GT:DS:GL:BD 0.50915754 1 1 70361476 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.921;LDAF=0.0109;AVGPOST=0.9968;RSQ=0.9025;ERATE=0.0004;THETA=0.0009;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70361489 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9475;ERATE=0.0004;THETA=0.0003;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70361690 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0468;AVGPOST=0.9995;RSQ=0.9948;ERATE=0.0004;THETA=0.0007;AC=102;AN=2184 GT:DS:GL:BD 0.04670330 0 1 70361817 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.740;LDAF=0.0042;AVGPOST=0.9965;RSQ=0.7181;ERATE=0.0005;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70361825 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.5826;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70361887 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0061;AVGPOST=0.9992;RSQ=0.9419;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70361968 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.724;LDAF=0.0024;AVGPOST=0.9991;RSQ=0.8347;ERATE=0.0003;THETA=0.0003;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70361990 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.993;LDAF=0.0066;AVGPOST=0.9992;RSQ=0.9532;ERATE=0.0003;THETA=0.0004;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70362041 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0047;AVGPOST=0.9976;RSQ=0.7919;ERATE=0.0003;THETA=0.0009;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70362073 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.751;LDAF=0.0015;AVGPOST=0.9980;RSQ=0.3685;ERATE=0.0005;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362094 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.921;LDAF=0.0015;AVGPOST=0.9979;RSQ=0.5213;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362204 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6627;ERATE=0.0005;THETA=0.0012;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70362226 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.874;LDAF=0.0026;AVGPOST=0.9984;RSQ=0.7415;ERATE=0.0005;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70362247 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0353;AVGPOST=0.9989;RSQ=0.9887;ERATE=0.0003;THETA=0.0008;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70362256 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0052;AVGPOST=0.9996;RSQ=0.9636;ERATE=0.0003;THETA=0.0002;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70362380 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6160;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362461 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0030;AVGPOST=0.9985;RSQ=0.8218;ERATE=0.0003;THETA=0.0009;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70362625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.831;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.9135;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70362650 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.776;LDAF=0.0047;AVGPOST=0.9995;RSQ=0.9534;ERATE=0.0004;THETA=0.0006;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70362673 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6829;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362733 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.935;LDAF=0.0013;AVGPOST=0.9995;RSQ=0.8460;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70362761 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0006;AVGPOST=0.9995;RSQ=0.6380;ERATE=0.0004;THETA=0.0011;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362873 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.951;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70362896 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70363036 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0013;AVGPOST=0.9989;RSQ=0.6473;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70363042 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.955;LDAF=0.0021;AVGPOST=0.9995;RSQ=0.8968;ERATE=0.0004;THETA=0.0004;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70363105 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.992;LDAF=0.9174;AVGPOST=0.9986;RSQ=0.9944;ERATE=0.0004;THETA=0.0004;AC=2004;AN=2184 GT:DS:GL:BD 0.91758239 1 1 70363240 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.761;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363247 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7809;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70363252 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6237;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363301 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0027;AVGPOST=0.9984;RSQ=0.7704;ERATE=0.0003;THETA=0.0008;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70363302 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.937;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5956;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363312 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0008;AVGPOST=0.9998;RSQ=0.8876;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70363324 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0112;AVGPOST=0.9996;RSQ=0.9852;ERATE=0.0003;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70363382 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.849;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6678;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363410 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.945;LDAF=0.0005;AVGPOST=1.0000;RSQ=0.9547;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363418 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.976;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7648;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70363448 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0344;AVGPOST=0.9996;RSQ=0.9949;ERATE=0.0003;THETA=0.0005;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70363450 . AT A 1949 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0114;AVGPOST=0.9985;RSQ=0.9489;ERATE=0.0003;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70363496 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0025;AVGPOST=0.9995;RSQ=0.9072;ERATE=0.0003;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70363503 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7629;ERATE=0.0005;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70363514 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0042;AVGPOST=0.9998;RSQ=0.9797;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70363554 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0504;AVGPOST=0.9992;RSQ=0.9930;ERATE=0.0004;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 70363581 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.761;LDAF=0.0017;AVGPOST=0.9994;RSQ=0.8921;ERATE=0.0003;THETA=0.0017;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70363642 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0102;AVGPOST=0.9994;RSQ=0.9702;ERATE=0.0003;THETA=0.0012;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70363681 . A AT 263 PASS INDEL;BAVGPOST=0.999;BRSQ=0.772;LDAF=0.0071;AVGPOST=0.9974;RSQ=0.8628;ERATE=0.0004;THETA=0.0004;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70363723 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0257;AVGPOST=0.9991;RSQ=0.9885;ERATE=0.0003;THETA=0.0004;AC=57;AN=2184 GT:DS:GL:BD 0.02609890 0 1 70363750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4790;AVGPOST=0.9979;RSQ=0.9965;ERATE=0.0006;THETA=0.0004;AC=1045;AN=2184 GT:DS:GL:BD 0.47847986 0 1 70363836 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0015;AVGPOST=0.9998;RSQ=0.9282;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70363902 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0032;AVGPOST=0.9973;RSQ=0.6811;ERATE=0.0004;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70363951 . C CT 187 PASS INDEL;BAVGPOST=0.996;BRSQ=0.595;LDAF=0.0051;AVGPOST=0.9938;RSQ=0.5572;ERATE=0.0004;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70364101 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.623;LDAF=0.0022;AVGPOST=0.9981;RSQ=0.6559;ERATE=0.0004;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70364224 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0088;AVGPOST=0.9973;RSQ=0.8877;ERATE=0.0004;THETA=0.0006;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70364272 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0115;AVGPOST=0.9994;RSQ=0.9765;ERATE=0.0004;THETA=0.0005;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70364343 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4792;AVGPOST=0.9975;RSQ=0.9961;ERATE=0.0006;THETA=0.0006;AC=1047;AN=2184 GT:DS:GL:BD 0.47939560 0 1 70364379 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70364423 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7512;ERATE=0.0003;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70364436 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.912;LDAF=0.0047;AVGPOST=0.9992;RSQ=0.9285;ERATE=0.0003;THETA=0.0004;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70364638 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.975;LDAF=0.0156;AVGPOST=0.9995;RSQ=0.9871;ERATE=0.0003;THETA=0.0004;AC=34;AN=2184 GT:DS:GL:BD 0.01556777 0 1 70364639 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.985;LDAF=0.0065;AVGPOST=0.9993;RSQ=0.9497;ERATE=0.0003;THETA=0.0003;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70364667 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0505;AVGPOST=0.9991;RSQ=0.9919;ERATE=0.0004;THETA=0.0005;AC=110;AN=2184 GT:DS:GL:BD 0.05036630 0 1 70364781 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.974;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6530;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70364852 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.948;LDAF=0.0029;AVGPOST=0.9995;RSQ=0.9263;ERATE=0.0004;THETA=0.0005;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70364859 . TAG T 82 PASS INDEL;BAVGPOST=1.000;BRSQ=0.801;LDAF=0.0028;AVGPOST=0.9963;RSQ=0.4907;ERATE=0.0004;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70364859 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.851;LDAF=0.0027;AVGPOST=0.9990;RSQ=0.8500;ERATE=0.0003;THETA=0.0015;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70364861 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0025;AVGPOST=0.9991;RSQ=0.8684;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70364908 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.950;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6744;ERATE=0.0004;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70364910 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.972;LDAF=0.0078;AVGPOST=0.9999;RSQ=0.9919;ERATE=0.0003;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70365041 . CGT C 125 PASS INDEL;BAVGPOST=0.991;BRSQ=0.714;LDAF=0.0227;AVGPOST=0.9766;RSQ=0.5795;ERATE=0.0082;THETA=0.0005;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70365042 . TG T 836 PASS INDEL;BAVGPOST=0.999;BRSQ=0.885;LDAF=0.0032;AVGPOST=0.9989;RSQ=0.8576;ERATE=0.0003;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70365044 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.865;LDAF=0.0008;AVGPOST=0.9991;RSQ=0.4815;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70365060 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.792;LDAF=0.0024;AVGPOST=0.9988;RSQ=0.8044;ERATE=0.0007;THETA=0.0003;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70365067 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.915;LDAF=0.0053;AVGPOST=0.9987;RSQ=0.8981;ERATE=0.0004;THETA=0.0004;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70365106 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0021;AVGPOST=0.9975;RSQ=0.5158;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70365134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.954;LDAF=0.0149;AVGPOST=0.9963;RSQ=0.8990;ERATE=0.0005;THETA=0.0008;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70365147 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.875;LDAF=0.0040;AVGPOST=0.9981;RSQ=0.8010;ERATE=0.0004;THETA=0.0011;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70365225 . A AT 697 PASS INDEL;BAVGPOST=0.999;BRSQ=0.954;LDAF=0.0121;AVGPOST=0.9992;RSQ=0.9669;ERATE=0.0005;THETA=0.0007;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70365238 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0419;AVGPOST=0.9974;RSQ=0.9739;ERATE=0.0004;THETA=0.0002;AC=89;AN=2184 GT:DS:GL:BD 0.04075092 0 1 70365267 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.610;LDAF=0.0019;AVGPOST=0.9987;RSQ=0.7431;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70365345 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0037;AVGPOST=0.9999;RSQ=0.9824;ERATE=0.0003;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70365364 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0012;AVGPOST=0.9991;RSQ=0.6621;ERATE=0.0004;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70365377 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.7338;AVGPOST=0.9985;RSQ=0.9967;ERATE=0.0005;THETA=0.0007;AC=1603;AN=2184 GT:DS:GL:BD 0.73397434 1 1 70365436 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.858;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8566;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70365744 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.2881;AVGPOST=0.9990;RSQ=0.9980;ERATE=0.0003;THETA=0.0007;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 70365780 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0008;AVGPOST=0.9996;RSQ=0.8303;ERATE=0.0003;THETA=0.0008;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70365844 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.924;LDAF=0.0029;AVGPOST=0.9994;RSQ=0.9109;ERATE=0.0003;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70365898 . C CTCCAT 4237 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0095;AVGPOST=0.9994;RSQ=0.9682;ERATE=0.0003;THETA=0.0005;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70365985 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.971;LDAF=0.0982;AVGPOST=0.9967;RSQ=0.9865;ERATE=0.0003;THETA=0.0005;AC=215;AN=2184 GT:DS:GL:BD 0.09844323 0 1 70365992 . TTTTTA T 473 PASS INDEL;BAVGPOST=1.000;BRSQ=0.984;LDAF=0.0026;AVGPOST=0.9994;RSQ=0.8860;ERATE=0.0004;THETA=0.0012;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70366053 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.905;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7980;ERATE=0.0003;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70366272 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.994;LDAF=0.0411;AVGPOST=0.9993;RSQ=0.9923;ERATE=0.0003;THETA=0.0004;AC=90;AN=2184 GT:DS:GL:BD 0.04120879 0 1 70366336 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.878;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7112;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70366552 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.7102;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70366572 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.993;LDAF=0.2884;AVGPOST=0.9941;RSQ=0.9890;ERATE=0.0017;THETA=0.0003;AC=630;AN=2184 GT:DS:GL:BD 0.28846154 0 1 70366657 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.7400;AVGPOST=0.9970;RSQ=0.9942;ERATE=0.0004;THETA=0.0005;AC=1616;AN=2184 GT:DS:GL:BD 0.73992676 1 1 70366682 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.956;LDAF=0.0015;AVGPOST=0.9987;RSQ=0.6596;ERATE=0.0006;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70366698 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.981;LDAF=0.0042;AVGPOST=0.9989;RSQ=0.9232;ERATE=0.0003;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70366738 rs35226833 C CT 6308 PASS INDEL;BAVGPOST=0.998;BRSQ=0.990;LDAF=0.0929;AVGPOST=0.9951;RSQ=0.9790;ERATE=0.0006;THETA=0.0011;AC=201;AN=2184 GT:DS:GL:BD 0.09203297 0 1 70366913 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.973;LDAF=0.0290;AVGPOST=0.9971;RSQ=0.9597;ERATE=0.0004;THETA=0.0037;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70366968 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.892;LDAF=0.0012;AVGPOST=0.9985;RSQ=0.4941;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70367031 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.946;LDAF=0.0016;AVGPOST=0.9992;RSQ=0.7812;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70367174 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0010;AVGPOST=0.9994;RSQ=0.7358;ERATE=0.0003;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70367240 . A AC 15 PASS INDEL;BAVGPOST=1.000;BRSQ=0.958;LDAF=0.0021;AVGPOST=0.9984;RSQ=0.6407;ERATE=0.0004;THETA=0.0011;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70367255 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.978;LDAF=0.0131;AVGPOST=0.9984;RSQ=0.9592;ERATE=0.0006;THETA=0.0009;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70367285 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.0019;AVGPOST=1.0000;RSQ=0.9882;ERATE=0.0003;THETA=0.0005;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70367294 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.816;LDAF=0.0020;AVGPOST=0.9992;RSQ=0.8652;ERATE=0.0004;THETA=0.0054;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70367317 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.3261;AVGPOST=0.9978;RSQ=0.9966;ERATE=0.0004;THETA=0.0004;AC=711;AN=2184 GT:DS:GL:BD 0.32554945 0 1 70367448 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.991;LDAF=0.0561;AVGPOST=0.9993;RSQ=0.9953;ERATE=0.0003;THETA=0.0021;AC=122;AN=2184 GT:DS:GL:BD 0.05586081 0 1 70367481 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0044;AVGPOST=0.9986;RSQ=0.9002;ERATE=0.0003;THETA=0.0027;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70367584 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.933;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5787;ERATE=0.0003;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70367635 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.990;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5027;ERATE=0.0004;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70367797 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0011;AVGPOST=0.9986;RSQ=0.4929;ERATE=0.0003;THETA=0.0027;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70367886 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0536;AVGPOST=0.9997;RSQ=0.9977;ERATE=0.0003;THETA=0.0013;AC=117;AN=2184 GT:DS:GL:BD 0.05357143 0 1 70367918 . G GT 2786 PASS INDEL;BAVGPOST=0.966;BRSQ=0.933;LDAF=0.3148;AVGPOST=0.9634;RSQ=0.9390;ERATE=0.0033;THETA=0.0005;AC=702;AN=2184 GT:DS:GL:BD 0.32142857 0 1 70368179 rs35343279 T TA 33940 PASS INDEL;BAVGPOST=0.982;BRSQ=0.968;LDAF=0.3319;AVGPOST=0.9879;RSQ=0.9819;ERATE=0.0004;THETA=0.0009;AC=729;AN=2184 GT:DS:GL:BD 0.33379120 0 1 70368182 . A AC 2504 PASS INDEL;BAVGPOST=0.965;BRSQ=0.929;LDAF=0.3098;AVGPOST=0.9612;RSQ=0.9392;ERATE=0.0019;THETA=0.0005;AC=692;AN=2184 GT:DS:GL:BD 0.31684983 0 1 70368184 . ATCGGCGAC A 680 PASS INDEL;BAVGPOST=0.993;BRSQ=0.609;LDAF=0.0080;AVGPOST=0.9930;RSQ=0.6778;ERATE=0.0005;THETA=0.0012;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70368368 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0032;AVGPOST=0.9984;RSQ=0.8038;ERATE=0.0003;THETA=0.0024;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70368492 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.873;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.8041;ERATE=0.0003;THETA=0.0029;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70368542 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.6829;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70368785 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.946;LDAF=0.0030;AVGPOST=0.9994;RSQ=0.9121;ERATE=0.0003;THETA=0.0002;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70368838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.873;LDAF=0.0008;AVGPOST=0.9992;RSQ=0.6065;ERATE=0.0003;THETA=0.0078;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70368857 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.902;LDAF=0.0028;AVGPOST=0.9993;RSQ=0.8974;ERATE=0.0003;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70369167 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.957;LDAF=0.0015;AVGPOST=0.9997;RSQ=0.9225;ERATE=0.0003;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70369300 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0043;AVGPOST=0.9996;RSQ=0.9673;ERATE=0.0003;THETA=0.0012;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70369343 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.931;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6745;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70369345 . C CT 10 PASS INDEL;BAVGPOST=1.000;BRSQ=0.850;LDAF=0.0007;AVGPOST=0.9996;RSQ=0.7255;ERATE=0.0003;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70369422 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.824;LDAF=0.0094;AVGPOST=0.9944;RSQ=0.7740;ERATE=0.0003;THETA=0.0024;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70369455 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.917;LDAF=0.0005;AVGPOST=0.9999;RSQ=0.9049;ERATE=0.0003;THETA=0.0009;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70369460 . CA C 793 PASS INDEL;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0060;AVGPOST=0.9983;RSQ=0.8841;ERATE=0.0005;THETA=0.0012;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70369466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.955;LDAF=0.0034;AVGPOST=0.9996;RSQ=0.9483;ERATE=0.0003;THETA=0.0009;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70369538 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3430;AVGPOST=0.9953;RSQ=0.9927;ERATE=0.0004;THETA=0.0010;AC=752;AN=2184 GT:DS:GL:BD 0.34432235 0 1 70369632 . A AC 14 PASS INDEL;BAVGPOST=1.000;BRSQ=0.753;LDAF=0.0014;AVGPOST=0.9983;RSQ=0.4731;ERATE=0.0005;THETA=0.0007;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70369646 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.3425;AVGPOST=0.9943;RSQ=0.9910;ERATE=0.0005;THETA=0.0003;AC=751;AN=2184 GT:DS:GL:BD 0.34386447 0 1 70369656 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.864;LDAF=0.0009;AVGPOST=0.9995;RSQ=0.7891;ERATE=0.0003;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70369680 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.996;LDAF=0.4021;AVGPOST=0.9945;RSQ=0.9926;ERATE=0.0004;THETA=0.0013;AC=881;AN=2184 GT:DS:GL:BD 0.40338829 0 1 70369689 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.531;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9335;ERATE=0.0003;THETA=0.0012;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70369693 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0068;AVGPOST=0.9994;RSQ=0.9676;ERATE=0.0003;THETA=0.0006;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70369761 . C CA 123 PASS INDEL;BAVGPOST=0.998;BRSQ=0.675;LDAF=0.0025;AVGPOST=0.9987;RSQ=0.7618;ERATE=0.0005;THETA=0.0018;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70369851 . A AC 41 PASS INDEL;BAVGPOST=0.990;BRSQ=0.349;LDAF=0.0164;AVGPOST=0.9782;RSQ=0.4921;ERATE=0.0016;THETA=0.0028;AC=18;AN=2184 GT:DS:GL:BD 0.00824176 0 1 70369939 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.916;LDAF=0.4614;AVGPOST=0.9632;RSQ=0.9461;ERATE=0.0019;THETA=0.0014;AC=1021;AN=2184 GT:DS:GL:BD 0.46749085 0 1 70369940 . A AT 163 PASS INDEL;BAVGPOST=0.951;BRSQ=0.324;LDAF=0.0572;AVGPOST=0.9323;RSQ=0.5158;ERATE=0.0058;THETA=0.0004;AC=77;AN=2184 GT:DS:GL:BD 0.03525641 0 1 70369942 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.952;BRSQ=0.890;LDAF=0.2680;AVGPOST=0.9676;RSQ=0.9399;ERATE=0.0019;THETA=0.0007;AC=593;AN=2184 GT:DS:GL:BD 0.27152014 0 1 70369950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.734;LDAF=0.0038;AVGPOST=0.9951;RSQ=0.4846;ERATE=0.0007;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70369973 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.992;LDAF=0.0192;AVGPOST=0.9971;RSQ=0.9456;ERATE=0.0004;THETA=0.0005;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70370195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0425;AVGPOST=0.9989;RSQ=0.9904;ERATE=0.0003;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70370237 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.829;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.4415;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70370254 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.755;LDAF=0.0017;AVGPOST=0.9975;RSQ=0.3492;ERATE=0.0007;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70370273 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.902;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8096;ERATE=0.0003;THETA=0.0009;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70370319 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.965;LDAF=0.0056;AVGPOST=0.9972;RSQ=0.8621;ERATE=0.0004;THETA=0.0007;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70370364 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.747;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6353;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70370437 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.744;LDAF=0.0236;AVGPOST=0.9828;RSQ=0.7183;ERATE=0.0011;THETA=0.0005;AC=37;AN=2184 GT:DS:GL:BD 0.01694139 0 1 70370509 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.1867;AVGPOST=0.9944;RSQ=0.9861;ERATE=0.0010;THETA=0.0009;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 70370533 . C CA 237 PASS INDEL;BAVGPOST=0.999;BRSQ=0.654;LDAF=0.0018;AVGPOST=0.9991;RSQ=0.7568;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70370631 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.976;LDAF=0.1854;AVGPOST=0.9964;RSQ=0.9910;ERATE=0.0006;THETA=0.0006;AC=405;AN=2184 GT:DS:GL:BD 0.18543956 0 1 70370679 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.996;LDAF=0.4747;AVGPOST=0.9936;RSQ=0.9893;ERATE=0.0014;THETA=0.0003;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 70370724 . AAAG A 46 PASS INDEL;BAVGPOST=0.999;BRSQ=0.766;LDAF=0.0023;AVGPOST=0.9971;RSQ=0.5022;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70370777 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0015;AVGPOST=0.9996;RSQ=0.8720;ERATE=0.0004;THETA=0.0004;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70370809 . CA C 5277 PASS INDEL;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0429;AVGPOST=0.9973;RSQ=0.9796;ERATE=0.0004;THETA=0.0005;AC=93;AN=2184 GT:DS:GL:BD 0.04258242 0 1 70370840 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.970;LDAF=0.4730;AVGPOST=0.9927;RSQ=0.9882;ERATE=0.0010;THETA=0.0005;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 70370893 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.994;LDAF=0.4754;AVGPOST=0.9980;RSQ=0.9967;ERATE=0.0005;THETA=0.0005;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 70370929 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.966;LDAF=0.0166;AVGPOST=0.9941;RSQ=0.8499;ERATE=0.0005;THETA=0.0006;AC=33;AN=2184 GT:DS:GL:BD 0.01510989 0 1 70370978 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0019;AVGPOST=0.9983;RSQ=0.6080;ERATE=0.0005;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70371013 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.895;LDAF=0.0060;AVGPOST=0.9918;RSQ=0.5073;ERATE=0.0005;THETA=0.0002;AC=10;AN=2184 GT:DS:GL:BD 0.00457875 0 1 70371047 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0232;AVGPOST=0.9970;RSQ=0.9462;ERATE=0.0004;THETA=0.0004;AC=48;AN=2184 GT:DS:GL:BD 0.02197802 0 1 70371134 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.762;LDAF=0.0024;AVGPOST=0.9995;RSQ=0.9077;ERATE=0.0003;THETA=0.0004;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70371181 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.999;LDAF=0.4748;AVGPOST=0.9973;RSQ=0.9954;ERATE=0.0005;THETA=0.0002;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 70371383 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.747;LDAF=0.0043;AVGPOST=0.9986;RSQ=0.8466;ERATE=0.0004;THETA=0.0003;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70371507 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.981;BRSQ=0.968;LDAF=0.4679;AVGPOST=0.9649;RSQ=0.9486;ERATE=0.0058;THETA=0.0004;AC=1031;AN=2184 GT:DS:GL:BD 0.47206959 0 1 70371539 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0052;AVGPOST=0.9978;RSQ=0.8566;ERATE=0.0003;THETA=0.0005;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70371569 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.989;LDAF=0.1864;AVGPOST=0.9977;RSQ=0.9937;ERATE=0.0007;THETA=0.0002;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 70371628 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.980;LDAF=0.1958;AVGPOST=0.9747;RSQ=0.9421;ERATE=0.0023;THETA=0.0002;AC=419;AN=2184 GT:DS:GL:BD 0.19184981 0 1 70371690 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.817;LDAF=0.0020;AVGPOST=0.9997;RSQ=0.9233;ERATE=0.0003;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70371781 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.448;LDAF=0.0051;AVGPOST=0.9938;RSQ=0.5130;ERATE=0.0010;THETA=0.0003;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70371782 . AAAGT A 498 PASS INDEL;BAVGPOST=1.000;BRSQ=0.986;LDAF=0.0070;AVGPOST=0.9963;RSQ=0.8007;ERATE=0.0008;THETA=0.0002;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70371804 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.996;LDAF=0.3777;AVGPOST=0.9940;RSQ=0.9906;ERATE=0.0008;THETA=0.0008;AC=820;AN=2184 GT:DS:GL:BD 0.37545788 0 1 70371871 rs74163733 A AG 14899 PASS INDEL;BAVGPOST=0.989;BRSQ=0.975;LDAF=0.1951;AVGPOST=0.9963;RSQ=0.9910;ERATE=0.0006;THETA=0.0002;AC=425;AN=2184 GT:DS:GL:BD 0.19459707 0 1 70371949 . G GA 3131 PASS INDEL;BAVGPOST=0.983;BRSQ=0.959;LDAF=0.1976;AVGPOST=0.9733;RSQ=0.9402;ERATE=0.0028;THETA=0.0003;AC=424;AN=2184 GT:DS:GL:BD 0.19413920 0 1 70371950 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.998;LDAF=0.4762;AVGPOST=0.9955;RSQ=0.9930;ERATE=0.0005;THETA=0.0005;AC=1040;AN=2184 GT:DS:GL:BD 0.47619048 0 1 70371973 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4772;AVGPOST=0.9983;RSQ=0.9970;ERATE=0.0007;THETA=0.0003;AC=1043;AN=2184 GT:DS:GL:BD 0.47756410 0 1 70372073 rs72005707 CAA C 2025 PASS INDEL;BAVGPOST=0.998;BRSQ=0.968;LDAF=0.0219;AVGPOST=0.9984;RSQ=0.9699;ERATE=0.0003;THETA=0.0006;AC=47;AN=2184 GT:DS:GL:BD 0.02152015 0 1 70372093 . A AT 6538 PASS INDEL;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0955;AVGPOST=0.9932;RSQ=0.9684;ERATE=0.0008;THETA=0.0003;AC=210;AN=2184 GT:DS:GL:BD 0.09615385 0 1 70372396 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1863;AVGPOST=0.9993;RSQ=0.9982;ERATE=0.0004;THETA=0.0005;AC=407;AN=2184 GT:DS:GL:BD 0.18635531 0 1 70372430 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.836;LDAF=0.0011;AVGPOST=0.9994;RSQ=0.7655;ERATE=0.0006;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70372471 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1868;AVGPOST=0.9988;RSQ=0.9976;ERATE=0.0004;THETA=0.0002;AC=408;AN=2184 GT:DS:GL:BD 0.18681319 0 1 70372580 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8965;ERATE=0.0003;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70372595 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0005;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0002;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70372597 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.999;LDAF=0.3760;AVGPOST=0.9993;RSQ=0.9988;ERATE=0.0004;THETA=0.0004;AC=819;AN=2184 GT:DS:GL:BD 0.37500000 0 1 70372605 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70372702 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.981;LDAF=0.0136;AVGPOST=0.9994;RSQ=0.9832;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70372837 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.4779;AVGPOST=0.9983;RSQ=0.9975;ERATE=0.0005;THETA=0.0004;AC=1044;AN=2184 GT:DS:GL:BD 0.47802198 0 1 70373033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.975;LDAF=0.0023;AVGPOST=1.0000;RSQ=1.0000;ERATE=0.0003;THETA=0.0038;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70373159 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.2903;AVGPOST=0.9994;RSQ=0.9988;ERATE=0.0003;THETA=0.0004;AC=634;AN=2184 GT:DS:GL:BD 0.29029304 0 1 70373322 . G GT 19 PASS INDEL;BAVGPOST=1.000;BRSQ=0.836;LDAF=0.0005;AVGPOST=0.9996;RSQ=0.6872;ERATE=0.0004;THETA=0.0005;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70373357 MERGED_DEL_2_8305 GAAAGATTTTGGTATGTGTAGTTGATAAAGATTGGTTAAGTCCATTACAACATTCTTTCTGCACCTTAGATTCACCCACACTTTCCCAATCTTTCTTTAATTGTAAATTCTCAATGCCATAGCTTCCATATCTTCTCAGTATCACTTTTTGAAATGAATCTTTTATACCATGCTCTGGCAAGAGGTCTTG GTATAGCATTA . . SV;BAVGPOST=1.000;BRSQ=0.960;LDAF=0.0000;AVGPOST=0.9999;RSQ=0.0499;ERATE=0.0003;THETA=0.0002;CIEND=-64;89;CIPOS=-94;63;END=247361389;HOMLEN=4;HOMSEQ=AAAG;SOURCE=BreakDancer_247354100_2473613 GT:DS:GL:BD 0.00000000 0 1 70373357 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.875;LDAF=0.0009;AVGPOST=0.9990;RSQ=0.5943;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70373579 . CAT C 880 PASS INDEL;BAVGPOST=0.979;BRSQ=0.883;LDAF=0.0965;AVGPOST=0.9927;RSQ=0.9697;ERATE=0.0006;THETA=0.0003;AC=211;AN=2184 GT:DS:GL:BD 0.09661172 0 1 70373586 rs34312253 ATAT A 13485 PASS INDEL;BAVGPOST=0.981;BRSQ=0.896;LDAF=0.0952;AVGPOST=0.9930;RSQ=0.9692;ERATE=0.0005;THETA=0.0006;AC=206;AN=2184 GT:DS:GL:BD 0.09432235 0 1 70373587 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.903;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8218;ERATE=0.0003;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70373663 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.998;LDAF=0.4824;AVGPOST=0.9963;RSQ=0.9944;ERATE=0.0010;THETA=0.0003;AC=1054;AN=2184 GT:DS:GL:BD 0.48260072 0 1 70373831 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.909;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7234;ERATE=0.0003;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70373917 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.932;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.6263;ERATE=0.0003;THETA=0.0014;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70373963 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.926;LDAF=0.0022;AVGPOST=0.9985;RSQ=0.7499;ERATE=0.0003;THETA=0.0002;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70374033 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.0403;AVGPOST=0.9998;RSQ=0.9979;ERATE=0.0003;THETA=0.0003;AC=88;AN=2184 GT:DS:GL:BD 0.04029304 0 1 70374131 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.880;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7189;ERATE=0.0003;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70374232 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4763;AVGPOST=0.9987;RSQ=0.9976;ERATE=0.0008;THETA=0.0003;AC=1041;AN=2184 GT:DS:GL:BD 0.47664836 0 1 70374279 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.4765;AVGPOST=0.9942;RSQ=0.9914;ERATE=0.0006;THETA=0.0003;AC=1038;AN=2184 GT:DS:GL:BD 0.47527471 0 1 70374438 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0291;AVGPOST=0.9992;RSQ=0.9876;ERATE=0.0003;THETA=0.0005;AC=63;AN=2184 GT:DS:GL:BD 0.02884615 0 1 70374445 rs35438166 TA T 17756 PASS INDEL;BAVGPOST=0.972;BRSQ=0.947;LDAF=0.4738;AVGPOST=0.9396;RSQ=0.9054;ERATE=0.0130;THETA=0.0002;AC=1033;AN=2184 GT:DS:GL:BD 0.47298536 0 1 70374540 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0014;AVGPOST=0.9999;RSQ=0.9531;ERATE=0.0003;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70374676 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.4743;AVGPOST=0.9950;RSQ=0.9914;ERATE=0.0014;THETA=0.0005;AC=1037;AN=2184 GT:DS:GL:BD 0.47481686 0 1 70374778 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.8077;ERATE=0.0003;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70374840 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.932;LDAF=0.0096;AVGPOST=0.9959;RSQ=0.8248;ERATE=0.0008;THETA=0.0003;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70374944 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.953;BRSQ=0.919;LDAF=0.4000;AVGPOST=0.9549;RSQ=0.9336;ERATE=0.0021;THETA=0.0011;AC=885;AN=2184 GT:DS:GL:BD 0.40521979 0 1 70374953 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0249;AVGPOST=0.9973;RSQ=0.9593;ERATE=0.0005;THETA=0.0006;AC=52;AN=2184 GT:DS:GL:BD 0.02380952 0 1 70374954 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.777;BRSQ=0.096;LDAF=0.1795;AVGPOST=0.7641;RSQ=0.3584;ERATE=0.0097;THETA=0.0034;AC=178;AN=2184 GT:DS:GL:BD 0.08150183 0 1 70375093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.632;BRSQ=0.438;LDAF=0.4001;AVGPOST=0.6975;RSQ=0.5411;ERATE=0.0213;THETA=0.0007;AC=817;AN=2184 GT:DS:GL:BD 0.37408423 0 1 70375134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.893;LDAF=0.0011;AVGPOST=0.9989;RSQ=0.6151;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70375403 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.908;LDAF=0.0039;AVGPOST=0.9991;RSQ=0.9190;ERATE=0.0004;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70375432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0229;AVGPOST=0.9984;RSQ=0.9740;ERATE=0.0004;THETA=0.0008;AC=49;AN=2184 GT:DS:GL:BD 0.02243590 0 1 70375454 . C CA 1633 PASS INDEL;BAVGPOST=0.997;BRSQ=0.917;LDAF=0.0148;AVGPOST=0.9967;RSQ=0.9225;ERATE=0.0005;THETA=0.0006;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70375467 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.769;LDAF=0.0066;AVGPOST=0.9964;RSQ=0.7902;ERATE=0.0005;THETA=0.0021;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70375534 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.800;LDAF=0.0025;AVGPOST=0.9976;RSQ=0.6528;ERATE=0.0006;THETA=0.0002;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70375618 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.798;LDAF=0.0038;AVGPOST=0.9986;RSQ=0.8586;ERATE=0.0004;THETA=0.0006;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70375626 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0310;AVGPOST=0.9982;RSQ=0.9742;ERATE=0.0005;THETA=0.0008;AC=66;AN=2184 GT:DS:GL:BD 0.03021978 0 1 70375702 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.902;BRSQ=0.838;LDAF=0.6645;AVGPOST=0.9224;RSQ=0.8775;ERATE=0.0064;THETA=0.0011;AC=1485;AN=2184 GT:DS:GL:BD 0.67994505 1 1 70376014 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.552;LDAF=0.0090;AVGPOST=0.9910;RSQ=0.5950;ERATE=0.0009;THETA=0.0016;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70376036 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.915;BRSQ=0.844;LDAF=0.7075;AVGPOST=0.9285;RSQ=0.8777;ERATE=0.0046;THETA=0.0014;AC=1579;AN=2184 GT:DS:GL:BD 0.72298533 1 1 70376055 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.837;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7508;ERATE=0.0004;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70376076 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.837;LDAF=0.0037;AVGPOST=0.9979;RSQ=0.7927;ERATE=0.0003;THETA=0.0012;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70376080 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.918;LDAF=0.0040;AVGPOST=0.9976;RSQ=0.7835;ERATE=0.0005;THETA=0.0006;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70376128 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.634;LDAF=0.0064;AVGPOST=0.9952;RSQ=0.6831;ERATE=0.0008;THETA=0.0007;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70376351 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.912;LDAF=0.0118;AVGPOST=0.9963;RSQ=0.8852;ERATE=0.0006;THETA=0.0006;AC=23;AN=2184 GT:DS:GL:BD 0.01053114 0 1 70376383 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.888;LDAF=0.0034;AVGPOST=0.9986;RSQ=0.8177;ERATE=0.0005;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70376681 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.574;LDAF=0.0024;AVGPOST=0.9979;RSQ=0.6369;ERATE=0.0005;THETA=0.0008;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70377152 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.925;BRSQ=0.444;LDAF=0.1137;AVGPOST=0.8651;RSQ=0.4585;ERATE=0.0142;THETA=0.0009;AC=147;AN=2184 GT:DS:GL:BD 0.06730770 0 1 70378783 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.791;BRSQ=0.706;LDAF=0.5410;AVGPOST=0.7760;RSQ=0.6783;ERATE=0.0292;THETA=0.0009;AC=1233;AN=2184 GT:DS:GL:BD 0.56456041 1 1 70378795 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.781;LDAF=0.0165;AVGPOST=0.9944;RSQ=0.8593;ERATE=0.0003;THETA=0.0048;AC=36;AN=2184 GT:DS:GL:BD 0.01648352 0 1 70378852 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.727;LDAF=0.0241;AVGPOST=0.9766;RSQ=0.6307;ERATE=0.0022;THETA=0.0011;AC=38;AN=2184 GT:DS:GL:BD 0.01739927 0 1 70378903 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.990;LDAF=0.0327;AVGPOST=0.9959;RSQ=0.9446;ERATE=0.0009;THETA=0.0003;AC=68;AN=2184 GT:DS:GL:BD 0.03113553 0 1 70378923 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.983;BRSQ=0.779;LDAF=0.0493;AVGPOST=0.9715;RSQ=0.7533;ERATE=0.0018;THETA=0.0004;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 70379110 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.880;BRSQ=0.738;LDAF=0.6778;AVGPOST=0.8510;RSQ=0.7278;ERATE=0.0079;THETA=0.0005;AC=1506;AN=2184 GT:DS:GL:BD 0.68956041 1 1 70379126 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.968;LDAF=0.0133;AVGPOST=0.9975;RSQ=0.9128;ERATE=0.0005;THETA=0.0005;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70379247 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.621;LDAF=0.0026;AVGPOST=0.9967;RSQ=0.5219;ERATE=0.0005;THETA=0.0024;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70379303 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.890;LDAF=0.0010;AVGPOST=0.9988;RSQ=0.4778;ERATE=0.0004;THETA=0.0018;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70379406 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7787;AVGPOST=0.9958;RSQ=0.9898;ERATE=0.0006;THETA=0.0007;AC=1701;AN=2184 GT:DS:GL:BD 0.77884614 1 1 70379465 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.914;LDAF=0.0038;AVGPOST=0.9978;RSQ=0.7584;ERATE=0.0004;THETA=0.0008;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70379470 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.861;LDAF=0.0026;AVGPOST=0.9985;RSQ=0.7924;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70379525 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.673;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6947;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70379532 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.929;LDAF=0.0023;AVGPOST=0.9985;RSQ=0.7641;ERATE=0.0004;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70379556 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.7537;AVGPOST=0.9989;RSQ=0.9973;ERATE=0.0004;THETA=0.0005;AC=1646;AN=2184 GT:DS:GL:BD 0.75366300 1 1 70379625 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.882;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6624;ERATE=0.0003;THETA=0.0007;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70379687 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.834;LDAF=0.0057;AVGPOST=0.9966;RSQ=0.7756;ERATE=0.0003;THETA=0.0004;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70379721 . AT A 187 PASS INDEL;BAVGPOST=0.999;BRSQ=0.815;LDAF=0.0027;AVGPOST=0.9983;RSQ=0.7444;ERATE=0.0004;THETA=0.0011;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70379727 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.885;LDAF=0.0015;AVGPOST=0.9988;RSQ=0.6302;ERATE=0.0005;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70379788 . T A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0124;AVGPOST=0.9997;RSQ=0.9892;ERATE=0.0003;THETA=0.0021;AC=27;AN=2184 GT:DS:GL:BD 0.01236264 0 1 70379799 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.971;LDAF=0.0013;AVGPOST=0.9993;RSQ=0.7637;ERATE=0.0003;THETA=0.0023;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70379891 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0134;AVGPOST=0.9987;RSQ=0.9590;ERATE=0.0004;THETA=0.0018;AC=29;AN=2184 GT:DS:GL:BD 0.01327839 0 1 70379909 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0657;AVGPOST=0.9936;RSQ=0.9584;ERATE=0.0005;THETA=0.0014;AC=143;AN=2184 GT:DS:GL:BD 0.06547619 0 1 70380093 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.838;LDAF=0.0038;AVGPOST=0.9983;RSQ=0.8187;ERATE=0.0004;THETA=0.0017;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70380104 . CAG C 96 PASS INDEL;BAVGPOST=1.000;BRSQ=0.788;LDAF=0.0022;AVGPOST=0.9980;RSQ=0.6211;ERATE=0.0005;THETA=0.0010;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70380116 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.979;LDAF=0.0062;AVGPOST=0.9993;RSQ=0.9453;ERATE=0.0004;THETA=0.0080;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70380121 . TGAGA T 4072 PASS INDEL;BAVGPOST=0.998;BRSQ=0.963;LDAF=0.0193;AVGPOST=0.9968;RSQ=0.9352;ERATE=0.0004;THETA=0.0011;AC=40;AN=2184 GT:DS:GL:BD 0.01831502 0 1 70380276 . G GA 679 PASS INDEL;BAVGPOST=1.000;BRSQ=0.987;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9634;ERATE=0.0003;THETA=0.0016;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70380311 . GAC G 547 PASS INDEL;BAVGPOST=0.999;BRSQ=0.907;LDAF=0.0064;AVGPOST=0.9989;RSQ=0.9206;ERATE=0.0005;THETA=0.0009;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70380432 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.942;BRSQ=0.549;LDAF=0.9304;AVGPOST=0.9514;RSQ=0.7188;ERATE=0.0036;THETA=0.0006;AC=2042;AN=2184 GT:DS:GL:BD 0.93498170 1 1 70380466 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.993;BRSQ=0.676;LDAF=0.0104;AVGPOST=0.9941;RSQ=0.7487;ERATE=0.0004;THETA=0.0019;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70380490 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.979;BRSQ=0.696;LDAF=0.9686;AVGPOST=0.9752;RSQ=0.7151;ERATE=0.0009;THETA=0.0014;AC=2125;AN=2184 GT:DS:GL:BD 0.97298533 1 1 70380515 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.792;BRSQ=0.671;LDAF=0.5132;AVGPOST=0.7858;RSQ=0.7064;ERATE=0.0324;THETA=0.0021;AC=1163;AN=2184 GT:DS:GL:BD 0.53250915 1 1 70380604 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.834;BRSQ=0.531;LDAF=0.2379;AVGPOST=0.8213;RSQ=0.5972;ERATE=0.0134;THETA=0.0028;AC=387;AN=2184 GT:DS:GL:BD 0.17719780 0 1 70380613 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.690;LDAF=0.0062;AVGPOST=0.9913;RSQ=0.3858;ERATE=0.0015;THETA=0.0058;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70380627 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.928;BRSQ=0.531;LDAF=0.0867;AVGPOST=0.9207;RSQ=0.5929;ERATE=0.0015;THETA=0.0030;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 70380630 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.949;BRSQ=0.742;LDAF=0.9110;AVGPOST=0.9337;RSQ=0.7051;ERATE=0.0068;THETA=0.0057;AC=2018;AN=2184 GT:DS:GL:BD 0.92399269 1 1 70380653 . GAC G 903 PASS INDEL;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0118;AVGPOST=0.9977;RSQ=0.9114;ERATE=0.0005;THETA=0.0067;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70380672 . GACAC G 990 PASS INDEL;BAVGPOST=0.998;BRSQ=0.891;LDAF=0.0091;AVGPOST=0.9970;RSQ=0.8714;ERATE=0.0005;THETA=0.0012;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70380684 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0339;AVGPOST=0.9959;RSQ=0.9510;ERATE=0.0005;THETA=0.0012;AC=72;AN=2184 GT:DS:GL:BD 0.03296703 0 1 70380855 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.963;LDAF=0.0334;AVGPOST=0.9956;RSQ=0.9477;ERATE=0.0004;THETA=0.0013;AC=71;AN=2184 GT:DS:GL:BD 0.03250916 0 1 70380865 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9687;ERATE=0.0004;THETA=0.0013;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70380875 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.989;BRSQ=0.970;LDAF=0.2038;AVGPOST=0.9839;RSQ=0.9626;ERATE=0.0006;THETA=0.0021;AC=440;AN=2184 GT:DS:GL:BD 0.20146520 0 1 70380911 rs56361749 T TAAAG 5817 PASS INDEL;BAVGPOST=0.617;BRSQ=0.308;LDAF=0.3030;AVGPOST=0.7076;RSQ=0.4689;ERATE=0.0164;THETA=0.0052;AC=484;AN=2184 GT:DS:GL:BD 0.22161172 0 1 70380986 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.832;LDAF=0.0538;AVGPOST=0.9770;RSQ=0.8207;ERATE=0.0010;THETA=0.0024;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 70381008 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.568;LDAF=0.0036;AVGPOST=0.9963;RSQ=0.5531;ERATE=0.0008;THETA=0.0014;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70381134 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.953;LDAF=0.9958;AVGPOST=0.9965;RSQ=0.6975;ERATE=0.0006;THETA=0.0061;AC=2177;AN=2184 GT:DS:GL:BD 0.99679488 1 1 70381156 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.856;LDAF=0.0070;AVGPOST=0.9956;RSQ=0.7561;ERATE=0.0004;THETA=0.0021;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70381229 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.964;LDAF=0.0029;AVGPOST=0.9988;RSQ=0.8397;ERATE=0.0004;THETA=0.0007;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70381231 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.911;LDAF=0.0009;AVGPOST=1.0000;RSQ=0.9768;ERATE=0.0003;THETA=0.0033;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70381321 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.828;LDAF=0.0122;AVGPOST=0.9981;RSQ=0.9374;ERATE=0.0005;THETA=0.0033;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70381367 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.966;LDAF=0.0014;AVGPOST=0.9993;RSQ=0.7801;ERATE=0.0004;THETA=0.0014;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70381376 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.749;LDAF=0.0029;AVGPOST=0.9981;RSQ=0.7537;ERATE=0.0004;THETA=0.0042;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70381563 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0096;AVGPOST=0.9993;RSQ=0.9700;ERATE=0.0003;THETA=0.0023;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70381625 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.942;LDAF=0.0114;AVGPOST=0.9991;RSQ=0.9676;ERATE=0.0004;THETA=0.0091;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70381794 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.977;LDAF=0.0070;AVGPOST=0.9986;RSQ=0.9097;ERATE=0.0005;THETA=0.0010;AC=14;AN=2184 GT:DS:GL:BD 0.00641026 0 1 70381808 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.899;LDAF=0.0008;AVGPOST=0.9994;RSQ=0.6252;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70381835 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0362;AVGPOST=0.9970;RSQ=0.9708;ERATE=0.0005;THETA=0.0053;AC=80;AN=2184 GT:DS:GL:BD 0.03663004 0 1 70381842 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.845;LDAF=0.0009;AVGPOST=0.9989;RSQ=0.5125;ERATE=0.0003;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70381940 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.796;LDAF=0.0018;AVGPOST=0.9982;RSQ=0.5725;ERATE=0.0005;THETA=0.0080;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70381943 . GT G 1330 PASS INDEL;BAVGPOST=0.956;BRSQ=0.708;LDAF=0.0868;AVGPOST=0.9444;RSQ=0.7055;ERATE=0.0266;THETA=0.0010;AC=154;AN=2184 GT:DS:GL:BD 0.07051282 0 1 70382070 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.946;LDAF=0.0626;AVGPOST=0.9878;RSQ=0.9194;ERATE=0.0003;THETA=0.0008;AC=133;AN=2184 GT:DS:GL:BD 0.06089744 0 1 70382123 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.946;LDAF=0.0617;AVGPOST=0.9872;RSQ=0.9125;ERATE=0.0008;THETA=0.0083;AC=129;AN=2184 GT:DS:GL:BD 0.05906593 0 1 70382124 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.984;LDAF=0.0114;AVGPOST=0.9999;RSQ=0.9946;ERATE=0.0003;THETA=0.0009;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70382195 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0095;AVGPOST=0.9990;RSQ=0.9609;ERATE=0.0003;THETA=0.0030;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70382229 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.923;LDAF=0.0006;AVGPOST=0.9996;RSQ=0.7282;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70382250 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.867;LDAF=0.1157;AVGPOST=0.9682;RSQ=0.8899;ERATE=0.0008;THETA=0.0006;AC=232;AN=2184 GT:DS:GL:BD 0.10622711 0 1 70382276 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.959;LDAF=0.0076;AVGPOST=0.9993;RSQ=0.9611;ERATE=0.0004;THETA=0.0048;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70382281 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.808;LDAF=0.0028;AVGPOST=0.9990;RSQ=0.8508;ERATE=0.0003;THETA=0.0022;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70382286 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.867;LDAF=0.0023;AVGPOST=0.9986;RSQ=0.7458;ERATE=0.0004;THETA=0.0023;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70382297 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.0114;AVGPOST=0.9994;RSQ=0.9823;ERATE=0.0003;THETA=0.0025;AC=25;AN=2184 GT:DS:GL:BD 0.01144689 0 1 70382312 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.827;LDAF=0.0012;AVGPOST=0.9995;RSQ=0.8143;ERATE=0.0004;THETA=0.0022;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70382376 MERGED_DEL_2_60 TCCACAGCCAGGACCAGTTCCCTCTGCTCTTGGGTGCCAAGGCCACCGTCAGCCAGGAGAGGCCTGCAGAATCAGCCTGTGCACCTCTCTGACGATAAGCAGAGATGCTGGTTTAGAGACTTGCTACTCACGGGGAAGTCCTTGGGCCTCCTGTACTCACATTACCTGGAACTTCTTGGAAATTCAGAAT TTGA . . SV;BAVGPOST=1.000;BRSQ=0.993;LDAF=0.0078;AVGPOST=0.9945;RSQ=0.7277;ERATE=0.0004;THETA=0.0010;CIEND=-80;73;CIPOS=-70;87;END=791881;HOMLEN=1;HOMSEQ=C;SOURCE=BreakDancer_776792_791885;EMBLdelly GT:DS:GL:BD 0.00595238 0 1 70382499 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.819;LDAF=0.0169;AVGPOST=0.9915;RSQ=0.8297;ERATE=0.0005;THETA=0.0019;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70382544 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.887;LDAF=0.0035;AVGPOST=0.9985;RSQ=0.8323;ERATE=0.0004;THETA=0.0011;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70382606 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.977;LDAF=0.0005;AVGPOST=0.9998;RSQ=0.8457;ERATE=0.0003;THETA=0.0039;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70382629 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.994;LDAF=0.0055;AVGPOST=0.9993;RSQ=0.9557;ERATE=0.0004;THETA=0.0017;AC=12;AN=2184 GT:DS:GL:BD 0.00549451 0 1 70382733 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0119;AVGPOST=0.9996;RSQ=0.9860;ERATE=0.0003;THETA=0.0027;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70382812 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.856;LDAF=0.0034;AVGPOST=0.9982;RSQ=0.7841;ERATE=0.0004;THETA=0.0033;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70382823 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.994;LDAF=0.7771;AVGPOST=0.9968;RSQ=0.9931;ERATE=0.0004;THETA=0.0005;AC=1696;AN=2184 GT:DS:GL:BD 0.77655679 1 1 70382852 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.988;BRSQ=0.915;LDAF=0.0578;AVGPOST=0.9782;RSQ=0.8517;ERATE=0.0004;THETA=0.0034;AC=116;AN=2184 GT:DS:GL:BD 0.05311355 0 1 70382962 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0131;AVGPOST=0.9989;RSQ=0.9636;ERATE=0.0005;THETA=0.0023;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70382967 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0121;AVGPOST=0.9994;RSQ=0.9781;ERATE=0.0003;THETA=0.0012;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70383048 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.796;LDAF=0.0036;AVGPOST=0.9980;RSQ=0.8046;ERATE=0.0005;THETA=0.0012;AC=7;AN=2184 GT:DS:GL:BD 0.00320513 0 1 70383065 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.984;BRSQ=0.842;LDAF=0.0426;AVGPOST=0.9809;RSQ=0.8357;ERATE=0.0063;THETA=0.0007;AC=84;AN=2184 GT:DS:GL:BD 0.03846154 0 1 70383091 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0155;AVGPOST=0.9936;RSQ=0.8262;ERATE=0.0005;THETA=0.0012;AC=28;AN=2184 GT:DS:GL:BD 0.01282051 0 1 70383186 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.894;LDAF=0.0028;AVGPOST=0.9969;RSQ=0.5616;ERATE=0.0006;THETA=0.0014;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70383432 . AACTGGAAG A 170 PASS INDEL;BAVGPOST=1.000;BRSQ=0.799;LDAF=0.0034;AVGPOST=0.9968;RSQ=0.6030;ERATE=0.0005;THETA=0.0018;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70383783 . ATCCT A 148 PASS INDEL;BAVGPOST=0.995;BRSQ=0.765;LDAF=0.0140;AVGPOST=0.9878;RSQ=0.6327;ERATE=0.0056;THETA=0.0038;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70383800 . A ACC 7432 PASS INDEL;BAVGPOST=0.720;BRSQ=0.298;LDAF=0.7057;AVGPOST=0.7074;RSQ=0.4080;ERATE=0.0444;THETA=0.0011;AC=1735;AN=2184 GT:DS:GL:BD 0.79441392 1 1 70384029 . A AAC 345 PASS INDEL;BAVGPOST=0.986;BRSQ=0.605;LDAF=0.0247;AVGPOST=0.9819;RSQ=0.7100;ERATE=0.0027;THETA=0.0017;AC=45;AN=2184 GT:DS:GL:BD 0.02060440 0 1 70384095 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.860;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6862;ERATE=0.0003;THETA=0.0033;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70384243 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.886;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5767;ERATE=0.0004;THETA=0.0008;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70384259 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.998;LDAF=0.9862;AVGPOST=0.9989;RSQ=0.9665;ERATE=0.0004;THETA=0.0014;AC=2155;AN=2184 GT:DS:GL:BD 0.98672163 1 1 70384299 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.5706;ERATE=0.0003;THETA=0.0010;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70384419 . AG A 88 PASS INDEL;BAVGPOST=0.996;BRSQ=0.730;LDAF=0.0111;AVGPOST=0.9892;RSQ=0.5871;ERATE=0.0045;THETA=0.0006;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70384420 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.990;LDAF=0.1961;AVGPOST=0.9849;RSQ=0.9664;ERATE=0.0023;THETA=0.0009;AC=428;AN=2184 GT:DS:GL:BD 0.19597070 0 1 70384475 . CTT C 146 PASS INDEL;BAVGPOST=0.999;BRSQ=0.642;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4292;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70384539 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.988;LDAF=0.0026;AVGPOST=0.9995;RSQ=0.9076;ERATE=0.0003;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70384717 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0053;AVGPOST=0.9994;RSQ=0.9678;ERATE=0.0003;THETA=0.0007;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70384815 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.997;LDAF=0.0041;AVGPOST=0.9992;RSQ=0.9088;ERATE=0.0004;THETA=0.0037;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70384876 . GC G 281 PASS INDEL;BAVGPOST=0.996;BRSQ=0.715;LDAF=0.0129;AVGPOST=0.9905;RSQ=0.6906;ERATE=0.0010;THETA=0.0008;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70385268 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.839;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.5893;ERATE=0.0004;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70385555 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1681;AVGPOST=0.9988;RSQ=0.9961;ERATE=0.0004;THETA=0.0007;AC=367;AN=2184 GT:DS:GL:BD 0.16804029 0 1 70385927 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0010;AVGPOST=0.9989;RSQ=0.5514;ERATE=0.0003;THETA=0.0044;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70385947 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.952;LDAF=0.0011;AVGPOST=0.9995;RSQ=0.8116;ERATE=0.0004;THETA=0.0004;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70386002 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.1676;AVGPOST=0.9989;RSQ=0.9963;ERATE=0.0004;THETA=0.0004;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 70386007 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.995;LDAF=0.0110;AVGPOST=0.9996;RSQ=0.9843;ERATE=0.0003;THETA=0.0006;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70386014 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=1.000;LDAF=0.1673;AVGPOST=0.9994;RSQ=0.9980;ERATE=0.0003;THETA=0.0004;AC=365;AN=2184 GT:DS:GL:BD 0.16712454 0 1 70386118 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.853;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5281;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70386166 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.989;LDAF=0.0055;AVGPOST=0.9989;RSQ=0.9201;ERATE=0.0003;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70386181 . TC T 611 PASS INDEL;BAVGPOST=0.998;BRSQ=0.846;LDAF=0.0079;AVGPOST=0.9981;RSQ=0.9067;ERATE=0.0005;THETA=0.0012;AC=16;AN=2184 GT:DS:GL:BD 0.00732601 0 1 70386299 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.963;LDAF=0.0012;AVGPOST=0.9994;RSQ=0.7740;ERATE=0.0004;THETA=0.0003;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70386473 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.946;LDAF=0.0102;AVGPOST=0.9982;RSQ=0.9270;ERATE=0.0004;THETA=0.0009;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70386550 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.786;LDAF=0.0022;AVGPOST=0.9979;RSQ=0.5900;ERATE=0.0004;THETA=0.0012;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70386665 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.641;LDAF=0.0019;AVGPOST=0.9981;RSQ=0.5483;ERATE=0.0005;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70386681 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.770;LDAF=0.0024;AVGPOST=0.9969;RSQ=0.5055;ERATE=0.0005;THETA=0.0029;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70386719 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.856;LDAF=0.0010;AVGPOST=0.9998;RSQ=0.8942;ERATE=0.0004;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70386736 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.971;LDAF=0.0115;AVGPOST=0.9975;RSQ=0.9069;ERATE=0.0004;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70386830 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.638;LDAF=0.0026;AVGPOST=0.9988;RSQ=0.7981;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70386918 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.838;LDAF=0.0006;AVGPOST=0.9998;RSQ=0.8098;ERATE=0.0004;THETA=0.0025;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70386939 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.564;LDAF=0.0051;AVGPOST=0.9934;RSQ=0.4867;ERATE=0.0010;THETA=0.0008;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70386990 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.983;LDAF=0.0010;AVGPOST=0.9999;RSQ=0.9547;ERATE=0.0003;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70387001 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.891;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6526;ERATE=0.0003;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70387048 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.766;LDAF=0.0135;AVGPOST=0.9946;RSQ=0.8490;ERATE=0.0006;THETA=0.0006;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70387438 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.598;LDAF=0.0045;AVGPOST=0.9971;RSQ=0.7487;ERATE=0.0007;THETA=0.0002;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70387548 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.922;LDAF=0.0016;AVGPOST=0.9995;RSQ=0.8439;ERATE=0.0004;THETA=0.0005;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70387737 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.951;LDAF=0.0148;AVGPOST=0.9972;RSQ=0.9223;ERATE=0.0004;THETA=0.0003;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70387738 . T G 100 PASS LCSNP;EXSNP;BAVGPOST=0.992;BRSQ=0.978;LDAF=0.2288;AVGPOST=0.9926;RSQ=0.9832;ERATE=0.0004;THETA=0.0009;AC=498;AN=2184 GT:DS:GL:BD 0.22802198 0 1 70387778 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0015;AVGPOST=0.9989;RSQ=0.7007;ERATE=0.0004;THETA=0.0043;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70387794 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.942;LDAF=0.0023;AVGPOST=0.9987;RSQ=0.7629;ERATE=0.0005;THETA=0.0010;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70387820 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.744;LDAF=0.0021;AVGPOST=0.9976;RSQ=0.5612;ERATE=0.0006;THETA=0.0014;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70387892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.790;LDAF=0.0031;AVGPOST=0.9981;RSQ=0.7389;ERATE=0.0006;THETA=0.0028;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70388220 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.991;BRSQ=0.983;LDAF=0.3367;AVGPOST=0.9892;RSQ=0.9829;ERATE=0.0004;THETA=0.0017;AC=739;AN=2184 GT:DS:GL:BD 0.33836997 0 1 70388245 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9992;RSQ=0.7845;ERATE=0.0004;THETA=0.0005;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70388269 . CCGAGT C 49 PASS INDEL;BAVGPOST=0.999;BRSQ=0.633;LDAF=0.0019;AVGPOST=0.9986;RSQ=0.6616;ERATE=0.0006;THETA=0.0007;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70388282 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.833;LDAF=0.0013;AVGPOST=0.9988;RSQ=0.6456;ERATE=0.0003;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70388291 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.985;BRSQ=0.476;LDAF=0.0210;AVGPOST=0.9778;RSQ=0.5898;ERATE=0.0008;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70388546 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.936;BRSQ=0.839;LDAF=0.2682;AVGPOST=0.9347;RSQ=0.8644;ERATE=0.0046;THETA=0.0011;AC=581;AN=2184 GT:DS:GL:BD 0.26602563 0 1 70388621 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.335;LDAF=0.0131;AVGPOST=0.9809;RSQ=0.4160;ERATE=0.0016;THETA=0.0008;AC=11;AN=2184 GT:DS:GL:BD 0.00503663 0 1 70388646 . AATTTTTTT A 253 PASS INDEL;BAVGPOST=0.975;BRSQ=0.258;LDAF=0.0440;AVGPOST=0.9440;RSQ=0.4788;ERATE=0.0037;THETA=0.0178;AC=55;AN=2184 GT:DS:GL:BD 0.02518315 0 1 70388750 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.471;LDAF=0.0085;AVGPOST=0.9883;RSQ=0.4267;ERATE=0.0008;THETA=0.0022;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70388889 . G GT 382 PASS INDEL;BAVGPOST=0.940;BRSQ=0.309;LDAF=0.1087;AVGPOST=0.8566;RSQ=0.4340;ERATE=0.0091;THETA=0.0068;AC=142;AN=2184 GT:DS:GL:BD 0.06501832 0 1 70388891 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.980;BRSQ=0.967;LDAF=0.4403;AVGPOST=0.9417;RSQ=0.9202;ERATE=0.0090;THETA=0.0049;AC=967;AN=2184 GT:DS:GL:BD 0.44276556 0 1 70388892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.919;LDAF=0.0191;AVGPOST=0.9936;RSQ=0.8687;ERATE=0.0009;THETA=0.0139;AC=35;AN=2184 GT:DS:GL:BD 0.01602564 0 1 70388896 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.691;LDAF=0.0064;AVGPOST=0.9966;RSQ=0.7791;ERATE=0.0004;THETA=0.0046;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70389048 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.872;LDAF=0.0014;AVGPOST=0.9984;RSQ=0.5755;ERATE=0.0003;THETA=0.0015;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70389079 . GTTTTC G 193 PASS INDEL;BAVGPOST=0.998;BRSQ=0.838;LDAF=0.0103;AVGPOST=0.9933;RSQ=0.7418;ERATE=0.0005;THETA=0.0053;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70389127 rs71578352 CT C 9363 PASS INDEL;BAVGPOST=0.907;BRSQ=0.823;LDAF=0.3706;AVGPOST=0.8949;RSQ=0.8294;ERATE=0.0121;THETA=0.0004;AC=827;AN=2184 GT:DS:GL:BD 0.37866300 0 1 70389142 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.948;BRSQ=0.903;LDAF=0.3734;AVGPOST=0.9556;RSQ=0.9335;ERATE=0.0020;THETA=0.0040;AC=830;AN=2184 GT:DS:GL:BD 0.38003662 0 1 70389281 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.686;LDAF=0.0013;AVGPOST=0.9983;RSQ=0.4380;ERATE=0.0005;THETA=0.0056;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70389299 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.744;LDAF=0.0007;AVGPOST=0.9995;RSQ=0.6896;ERATE=0.0004;THETA=0.0006;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70389518 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.920;LDAF=0.0007;AVGPOST=0.9994;RSQ=0.6721;ERATE=0.0003;THETA=0.0061;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70389536 . A G 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0090;AVGPOST=0.9994;RSQ=0.9754;ERATE=0.0003;THETA=0.0051;AC=19;AN=2184 GT:DS:GL:BD 0.00869963 0 1 70389557 . TC T 51 PASS INDEL;BAVGPOST=0.985;BRSQ=0.189;LDAF=0.0691;AVGPOST=0.9139;RSQ=0.5070;ERATE=0.0022;THETA=0.0005;AC=125;AN=2184 GT:DS:GL:BD 0.05723443 0 1 70389693 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.957;BRSQ=0.614;LDAF=0.0759;AVGPOST=0.9320;RSQ=0.5910;ERATE=0.0315;THETA=0.0009;AC=118;AN=2184 GT:DS:GL:BD 0.05402930 0 1 70389707 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.927;LDAF=0.0016;AVGPOST=0.9986;RSQ=0.6622;ERATE=0.0006;THETA=0.0018;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70389829 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.961;LDAF=0.0026;AVGPOST=0.9982;RSQ=0.7505;ERATE=0.0005;THETA=0.0064;AC=6;AN=2184 GT:DS:GL:BD 0.00274725 0 1 70389839 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.997;LDAF=0.3903;AVGPOST=0.9957;RSQ=0.9931;ERATE=0.0007;THETA=0.0011;AC=856;AN=2184 GT:DS:GL:BD 0.39194140 0 1 70389983 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.738;LDAF=0.0009;AVGPOST=0.9991;RSQ=0.5389;ERATE=0.0004;THETA=0.0003;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70390006 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.932;LDAF=0.0142;AVGPOST=0.9990;RSQ=0.9704;ERATE=0.0003;THETA=0.0004;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70390042 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.816;LDAF=0.0114;AVGPOST=0.9947;RSQ=0.8043;ERATE=0.0006;THETA=0.0008;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70390043 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0098;AVGPOST=0.9996;RSQ=0.9804;ERATE=0.0003;THETA=0.0004;AC=21;AN=2184 GT:DS:GL:BD 0.00961538 0 1 70390059 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.834;LDAF=0.0008;AVGPOST=0.9993;RSQ=0.6105;ERATE=0.0003;THETA=0.0040;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70390094 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.777;LDAF=0.0011;AVGPOST=0.9987;RSQ=0.4531;ERATE=0.0004;THETA=0.0004;AC=1;AN=2184 GT:DS:GL:BD 0.00045788 0 1 70390387 . C A 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.991;LDAF=0.0027;AVGPOST=0.9992;RSQ=0.8527;ERATE=0.0005;THETA=0.0005;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70390614 . C G 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.630;LDAF=0.0026;AVGPOST=0.9971;RSQ=0.5073;ERATE=0.0007;THETA=0.0036;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70390647 rs113784143 A AG 17209 PASS INDEL;BAVGPOST=0.980;BRSQ=0.963;LDAF=0.3367;AVGPOST=0.9789;RSQ=0.9665;ERATE=0.0007;THETA=0.0020;AC=736;AN=2184 GT:DS:GL:BD 0.33699635 0 1 70390738 . G GT 4676 PASS INDEL;BAVGPOST=0.964;BRSQ=0.931;LDAF=0.3262;AVGPOST=0.9622;RSQ=0.9423;ERATE=0.0026;THETA=0.0018;AC=712;AN=2184 GT:DS:GL:BD 0.32600734 0 1 70390740 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.898;LDAF=0.0044;AVGPOST=0.9972;RSQ=0.7658;ERATE=0.0004;THETA=0.0004;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70390787 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.990;BRSQ=0.662;LDAF=0.0137;AVGPOST=0.9903;RSQ=0.7170;ERATE=0.0009;THETA=0.0005;AC=22;AN=2184 GT:DS:GL:BD 0.01007326 0 1 70390878 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.960;LDAF=0.0579;AVGPOST=0.9959;RSQ=0.9696;ERATE=0.0006;THETA=0.0003;AC=124;AN=2184 GT:DS:GL:BD 0.05677656 0 1 70390892 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.943;LDAF=0.0444;AVGPOST=0.9900;RSQ=0.9198;ERATE=0.0005;THETA=0.0025;AC=95;AN=2184 GT:DS:GL:BD 0.04349817 0 1 70391157 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.431;LDAF=0.0023;AVGPOST=0.9965;RSQ=0.3998;ERATE=0.0008;THETA=0.0006;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70391165 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.983;LDAF=0.0960;AVGPOST=0.9910;RSQ=0.9604;ERATE=0.0005;THETA=0.0018;AC=207;AN=2184 GT:DS:GL:BD 0.09478022 0 1 70391167 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.970;LDAF=0.0505;AVGPOST=0.9973;RSQ=0.9794;ERATE=0.0005;THETA=0.0006;AC=109;AN=2184 GT:DS:GL:BD 0.04990843 0 1 70391241 . TG T 604 PASS INDEL;BAVGPOST=0.998;BRSQ=0.873;LDAF=0.0097;AVGPOST=0.9947;RSQ=0.7769;ERATE=0.0010;THETA=0.0006;AC=20;AN=2184 GT:DS:GL:BD 0.00915751 0 1 70391246 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.732;LDAF=0.0045;AVGPOST=0.9958;RSQ=0.6046;ERATE=0.0006;THETA=0.0013;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0 1 70391260 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.654;LDAF=0.0023;AVGPOST=0.9981;RSQ=0.6524;ERATE=0.0005;THETA=0.0045;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70391398 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.974;LDAF=0.0274;AVGPOST=0.9921;RSQ=0.8789;ERATE=0.0009;THETA=0.0008;AC=53;AN=2184 GT:DS:GL:BD 0.02426740 0 1 70391467 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.855;LDAF=0.0183;AVGPOST=0.9868;RSQ=0.7027;ERATE=0.0007;THETA=0.0005;AC=31;AN=2184 GT:DS:GL:BD 0.01419414 0 1 70391838 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.410;LDAF=0.0155;AVGPOST=0.9817;RSQ=0.5333;ERATE=0.0017;THETA=0.0005;AC=26;AN=2184 GT:DS:GL:BD 0.01190476 0 1 70391841 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.564;LDAF=0.0155;AVGPOST=0.9821;RSQ=0.5219;ERATE=0.0020;THETA=0.0004;AC=24;AN=2184 GT:DS:GL:BD 0.01098901 0 1 70391876 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.584;LDAF=0.0126;AVGPOST=0.9846;RSQ=0.5127;ERATE=0.0009;THETA=0.0007;AC=17;AN=2184 GT:DS:GL:BD 0.00778388 0 1 70391927 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.696;LDAF=0.0018;AVGPOST=0.9983;RSQ=0.5738;ERATE=0.0004;THETA=0.0006;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70392075 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.971;BRSQ=0.754;LDAF=0.0657;AVGPOST=0.9858;RSQ=0.9187;ERATE=0.0007;THETA=0.0003;AC=138;AN=2184 GT:DS:GL:BD 0.06318682 0 1 70392188 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.965;BRSQ=0.935;LDAF=0.3254;AVGPOST=0.9378;RSQ=0.8957;ERATE=0.0040;THETA=0.0006;AC=705;AN=2184 GT:DS:GL:BD 0.32280219 0 1 70392260 . G C 100 PASS LCSNP;EXSNP;BAVGPOST=0.997;BRSQ=0.530;LDAF=0.0173;AVGPOST=0.9809;RSQ=0.5528;ERATE=0.0016;THETA=0.0019;AC=30;AN=2184 GT:DS:GL:BD 0.01373626 0 1 70392300 . A T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.455;LDAF=0.0083;AVGPOST=0.9850;RSQ=0.2236;ERATE=0.0014;THETA=0.0003;AC=3;AN=2184 GT:DS:GL:BD 0.00137363 0 1 70392332 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.991;LDAF=0.0796;AVGPOST=0.9943;RSQ=0.9720;ERATE=0.0007;THETA=0.0009;AC=170;AN=2184 GT:DS:GL:BD 0.07783883 0 1 70392561 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.996;BRSQ=0.613;LDAF=0.0061;AVGPOST=0.9953;RSQ=0.6981;ERATE=0.0007;THETA=0.0003;AC=9;AN=2184 GT:DS:GL:BD 0.00412088 0 1 70392749 . T C 100 PASS LCSNP;EXSNP;BAVGPOST=0.986;BRSQ=0.956;LDAF=0.1271;AVGPOST=0.9915;RSQ=0.9732;ERATE=0.0006;THETA=0.0005;AC=276;AN=2184 GT:DS:GL:BD 0.12637363 0 1 70392776 . GGGA G 645 PASS INDEL;BAVGPOST=1.000;BRSQ=0.999;LDAF=0.0077;AVGPOST=0.9982;RSQ=0.8980;ERATE=0.0005;THETA=0.0005;AC=15;AN=2184 GT:DS:GL:BD 0.00686813 0 1 70392810 . G A 100 PASS LCSNP;EXSNP;BAVGPOST=0.995;BRSQ=0.961;LDAF=0.0618;AVGPOST=0.9979;RSQ=0.9867;ERATE=0.0003;THETA=0.0005;AC=134;AN=2184 GT:DS:GL:BD 0.06135531 0 1 70392817 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.998;BRSQ=0.449;LDAF=0.0037;AVGPOST=0.9978;RSQ=0.7549;ERATE=0.0006;THETA=0.0008;AC=8;AN=2184 GT:DS:GL:BD 0.00366300 0 1 70392974 . G T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.996;LDAF=0.0063;AVGPOST=0.9993;RSQ=0.9457;ERATE=0.0004;THETA=0.0005;AC=13;AN=2184 GT:DS:GL:BD 0.00595238 0 1 70393020 . A C 100 PASS LCSNP;EXSNP;BAVGPOST=0.994;BRSQ=0.929;LDAF=0.0366;AVGPOST=0.9937;RSQ=0.9266;ERATE=0.0009;THETA=0.0013;AC=75;AN=2184 GT:DS:GL:BD 0.03434066 0 1 70393482 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=0.999;BRSQ=0.789;LDAF=0.0014;AVGPOST=0.9989;RSQ=0.7148;ERATE=0.0005;THETA=0.0002;AC=2;AN=2184 GT:DS:GL:BD 0.00091575 0 1 70393499 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.967;LDAF=0.0021;AVGPOST=0.9992;RSQ=0.8194;ERATE=0.0005;THETA=0.0006;AC=4;AN=2184 GT:DS:GL:BD 0.00183150 0 1 70393545 . C T 100 PASS LCSNP;EXSNP;BAVGPOST=1.000;BRSQ=0.906;LDAF=0.0031;AVGPOST=0.9984;RSQ=0.7656;ERATE=0.0009;THETA=0.0009;AC=5;AN=2184 GT:DS:GL:BD 0.00228938 0