propINIcalls {farms} | R Documentation |
This function determinates the number of informative genes of a given instance of exprSet-class
which has been summarized by exp.farms
, q.farms
or l.farms
before.
propINIcalls(object)
object |
An instance of exprSet-class . |
exp.farms
, q.farms
,l.farms
,INIcalls
,plotINIcalls
data(affybatch.example) eset <- exp.farms(affybatch.example, bgcorrect.method = "rma", pmcorrect.method = "pmonly", normalize.method = "constant") eset2 <- INIcalls(eset) exprs(eset2) inf_genes <- propINIcalls(eset) cat(paste(inf_genes, " percentage of the genes are informative", sep = " ")) plotINIcalls(eset)