FARMS - Factor Analysis for Robust Microarray Summarization


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Documentation for package ‘farms’ version 1.4.0

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exp.farms Factor Analysis for Robust Microarray Summarization
generateExprVal.method.farms Generate an expression value from the probes informations
getI_Eset Method to generate an ExpressionSet of informative genes
getI_ProbeSets Method to generate a vector of informative probe set names
getNI_Eset Method to generate an ExpressionSet of non-informative genes
getNI_ProbeSets Method to generate a vector of non-informative probe set names
INIcalls Dimension reduction based on informative genes
l.farms l.farms expression measure
plotINIs Visualizes the distribution of informative / noninformatives genes
q.farms q.farms expression measure
summary Summary of I/NI-calls