[1] "###############################" [1] "####DENISOVA###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = -95.8415, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.2784773 -0.2677316 sample estimates: cor -0.273113 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 2.923488e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.1851163 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.09388155 0.10506543 sample estimates: odds ratio 0.09931312 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 4.0533, df = 113961, p-value = 5.053e-05 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.006200655 0.017810712 sample estimates: cor 0.01200609 [1] "==========5.05292004058244e-05=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 2.246334e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.08938695 [1] "==========8.01562270362143e-201=============" Fisher's Exact Test for Count Data data: conf p-value = 0.0003875 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.077085 1.292608 sample estimates: odds ratio 1.180843 [1] "==========0.000387499265248055=============" [1] "###############################" [1] "###############################" [1] "####ASIAN####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 116.0249, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.319831 0.330216 sample estimates: cor 0.3250333 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 1.953336e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2081615 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 13.66887 15.45629 sample estimates: odds ratio 14.53473 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and DenisovaMat[, 12] t = 25.348, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.06910063 0.08064727 sample estimates: cor 0.07487646 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and DenisovaMat[, 12] S = 2.240868e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09160264 [1] "==========7.72116668541538e-211=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.328313 2.779456 sample estimates: odds ratio 2.545467 [1] "==========2.71004034578505e-80=============" [1] "###############################" [1] "###############################" [1] "####NEANDERTAL###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = -174.8457, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.4644757 -0.4553200 sample estimates: cor -0.4599101 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 3.094942e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.25462 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.03573338 0.03988137 sample estimates: odds ratio 0.037771 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 31.2979, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.08655693 0.09806970 sample estimates: cor 0.0923164 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 2.167645e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1212854 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.538624 2.903084 sample estimates: odds ratio 2.715401 [1] "==========9.45592195708443e-160=============" [1] "###############################" [1] "###############################" [1] "####ASIAN####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 136.6448, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.3702048 0.3801819 sample estimates: cor 0.3752042 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 1.757145e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2876928 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 18.78830 21.20144 sample estimates: odds ratio 19.9622 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and NeanderMat[, 12] t = 109.6593, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.3036860 0.3141895 sample estimates: cor 0.3089472 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and NeanderMat[, 12] S = 2.00622e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1867234 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 11.88013 13.50336 sample estimates: odds ratio 12.66953 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####ANCESTOR###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = -5.3432, df = 113961, p-value = 9.149e-08 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.02162979 -0.01002097 sample estimates: cor -0.01582592 [1] "==========9.14948715434911e-08=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 2.707123e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.09740656 [1] "==========2.94878273824614e-238=============" Fisher's Exact Test for Count Data data: conf p-value = 0.001168 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.7464619 0.9306795 sample estimates: odds ratio 0.8325297 [1] "==========0.00116837589121304=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = 3.887, df = 113961, p-value = 0.0001015 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.005708142 0.017318334 sample estimates: cor 0.01151363 [1] "==========0.000101531367513896=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 2.141703e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1318019 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value = 0.3479 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.8307168 1.0634710 sample estimates: odds ratio 0.9413852 [1] "==========0.347864371542357=============" [1] "###############################" [1] "###############################" [1] "####ASIAN####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = -3.0551, df = 113961, p-value = 0.00225 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.014854753 -0.003243973 sample estimates: cor -0.009049668 [1] "==========0.00225020989936031=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 2.471937e+14, p-value = 0.4851 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.002067817 [1] "==========0.485142674578535=============" Fisher's Exact Test for Count Data data: conf p-value = 9.103e-08 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.248333 1.599230 sample estimates: odds ratio 1.415079 [1] "==========9.10316759404917e-08=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: PopulationMat[, pop] and AncestMat[, 12] t = 11.7301, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02892653 0.04052426 sample estimates: cor 0.03472657 [1] "==========0=============" Spearman's rank correlation rho data: PopulationMat[, pop] and AncestMat[, 12] S = 2.244067e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09030595 [1] "==========6.02139971424212e-205=============" Fisher's Exact Test for Count Data data: conf p-value = 1.59e-06 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.222163 1.598089 sample estimates: odds ratio 1.400085 [1] "==========1.59045862078264e-06=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 2###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.08358347 0.09977473 sample estimates: odds ratio 0.09130637 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.0487 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9971836 1.3657991 sample estimates: odds ratio 1.169988 [1] "==========0.0486992898390597=============" [1] "###############################" [1] "###############################" [1] "####ASIAN####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 12.80339 15.37113 sample estimates: odds ratio 14.02957 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.396326 3.179906 sample estimates: odds ratio 2.765596 [1] "==========3.85071303384795e-37=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 3###########" [1] "###############################" [1] "###############################" [1] "####AFRICAN####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.08971687 0.10696655 sample estimates: odds ratio 0.09794895 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####AD MIX AMERICAN####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.05193 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9860333 1.6045634 sample estimates: odds ratio 1.266502 [1] "==========0.0519254971677243=============" [1] "###############################" [1] "###############################" [1] "####ASIAN####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 13.22229 15.92202 sample estimates: odds ratio 14.51364 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####EUROPEAN####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.349048 3.241670 sample estimates: odds ratio 2.766345 [1] "==========7.12213310530182e-29=============" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "###############################" [1] "####DENISOVA###########" [1] "###############################" [1] "###############################" [1] "####HapMapAfricans####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = -16.2093, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.05375152 -0.04216649 sample estimates: cor -0.04796062 [1] "==========5.05217642771313e-59=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.409835e+14, p-value = 6.118e-15 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.02310694 [1] "==========6.11805744710725e-15=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5493530 0.6200511 sample estimates: odds ratio 0.5837732 [1] "==========3.86049734458576e-75=============" [1] "###############################" [1] "###############################" [1] "####CEPHEuropean####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 19.8791, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.05299719 0.06456880 sample estimates: cor 0.05878497 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.28522e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.07362334 [1] "==========1.01424654626242e-136=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.164886 3.122933 sample estimates: odds ratio 2.607774 [1] "==========4.95782675312674e-21=============" [1] "###############################" [1] "###############################" [1] "####mixKoreanCEU####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####HanChineseBeijing####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 60.1717, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.1698450 0.1810992 sample estimates: cor 0.1754778 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.151319e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1279038 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 6.893779 8.420514 sample estimates: odds ratio 7.620525 [1] "==========1.15528199800061e-262=============" [1] "###############################" [1] "###############################" [1] "####HanChineseSouth####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 53.062, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.1496056 0.1609373 sample estimates: cor 0.1552766 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.178093e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.11705 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 6.163985 7.646187 sample estimates: odds ratio 6.867992 [1] "==========8.32572553212944e-205=============" [1] "###############################" [1] "###############################" [1] "####Colombian####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 1.932, df = 113961, p-value = 0.05336 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -8.286406e-05 1.152849e-02 sample estimates: cor 0.005723004 [1] "==========0.0533607731936663=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.276419e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.07719098 [1] "==========3.93273874836333e-150=============" Fisher's Exact Test for Count Data data: conf p-value = 0.5851 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.8625454 1.2741472 sample estimates: odds ratio 1.052709 [1] "==========0.585093097640294=============" [1] "###############################" [1] "###############################" [1] "####HapMapFinnish####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 23.1751, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.06270837 0.07426564 sample estimates: cor 0.0684893 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.27577e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.07745408 [1] "==========3.80445623568127e-151=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.669839 3.671164 sample estimates: odds ratio 3.137197 [1] "==========7.25585097724061e-37=============" [1] "###############################" [1] "###############################" [1] "####British####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 21.9575, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.05912295 0.07068577 sample estimates: cor 0.06490654 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.295269e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06954944 [1] "==========3.45957301114503e-122=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.367160 3.331378 sample estimates: odds ratio 2.81518 [1] "==========3.04655063692521e-27=============" [1] "###############################" [1] "###############################" [1] "####Iberian####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 10.1729, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02431954 0.03592074 sample estimates: cor 0.03012115 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.359488e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.04351661 [1] "==========6.70679959193689e-49=============" Fisher's Exact Test for Count Data data: conf p-value = 0.0008092 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.478919 4.605889 sample estimates: odds ratio 2.693306 [1] "==========0.000809249209482385=============" [1] "###############################" [1] "###############################" [1] "####Japanese####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 50.3412, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.1418078 0.1531670 sample estimates: cor 0.1474922 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.169502e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1205327 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 6.209156 7.822692 sample estimates: odds ratio 6.973116 [1] "==========5.97260086493782e-181=============" [1] "###############################" [1] "###############################" [1] "####KOREAN####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 100.3953, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2797142 0.2903825 sample estimates: cor 0.2850572 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 1.980624e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1970998 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 32.95253 40.97014 sample estimates: odds ratio 36.73551 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####KOREANfamily####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####Luhya####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = -20.4207, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.06616351 -0.05459412 sample estimates: cor -0.06038084 [1] "==========1.60507237055311e-92=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.429938e+14, p-value = 4.424e-07 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.01495776 [1] "==========4.42438625926164e-07=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.4802899 0.5323079 sample estimates: odds ratio 0.5056676 [1] "==========1.25839288360884e-156=============" [1] "###############################" [1] "###############################" [1] "####MapMapMexican####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = 11.3122, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02769026 0.03928897 sample estimates: cor 0.03349074 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.257544e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.08484237 [1] "==========4.68385001610398e-181=============" Fisher's Exact Test for Count Data data: conf p-value = 6.674e-10 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.505353 2.151625 sample estimates: odds ratio 1.805333 [1] "==========6.67379254031478e-10=============" [1] "###############################" [1] "###############################" [1] "####PuertoRican####DENISOVA###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and DenisovaMat[, 12] t = -1.0442, df = 113961, p-value = 0.2964 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.008898814 0.002712807 sample estimates: cor -0.003093108 [1] "==========0.29640445539464=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and DenisovaMat[, 12] S = 2.27866e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.07628239 [1] "==========1.1775943233581e-146=============" Fisher's Exact Test for Count Data data: conf p-value = 0.007926 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.6612003 0.9438803 sample estimates: odds ratio 0.7927716 [1] "==========0.0079262254595742=============" [1] "###############################" [1] "###############################" [1] "####NEANDERTAL###########" [1] "###############################" [1] "###############################" [1] "####HapMapAfricans####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = -32.3848, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.10124336 -0.08973752 sample estimates: cor -0.09549363 [1] "==========4.95997881016369e-229=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.478157e+14, p-value = 0.1213 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.004589063 [1] "==========0.121337124846146=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.3649401 0.4152588 sample estimates: odds ratio 0.3894135 [1] "==========3.13430303872854e-220=============" [1] "###############################" [1] "###############################" [1] "####CEPHEuropean####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 80.0186, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2251399 0.2361340 sample estimates: cor 0.2306443 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.062378e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1639585 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 11.35197 14.64603 sample estimates: odds ratio 12.89685 [1] "==========9.23742836777547e-275=============" [1] "###############################" [1] "###############################" [1] "####mixKoreanCEU####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####HanChineseBeijing####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 112.2637, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.3103241 0.3207796 sample estimates: cor 0.3155614 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 1.915385e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2235462 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 21.73215 26.22708 sample estimates: odds ratio 23.85974 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####HanChineseSouth####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 98.995, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2760434 0.2867357 sample estimates: cor 0.2813983 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 1.941148e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2131023 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 17.36043 21.13364 sample estimates: odds ratio 19.14737 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####Colombian####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 20.2311, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.05403524 0.06560542 sample estimates: cor 0.05982234 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.183831e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1147239 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.758329 2.338798 sample estimates: odds ratio 2.031643 [1] "==========7.84105020291528e-20=============" [1] "###############################" [1] "###############################" [1] "####HapMapFinnish####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 87.5705, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2456473 0.2565270 sample estimates: cor 0.2510951 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.02324e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1798241 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 15.80978 20.01275 sample estimates: odds ratio 17.78356 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####British####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 85.9227, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2411998 0.2521051 sample estimates: cor 0.2466603 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.043756e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1715074 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 14.16524 18.07400 sample estimates: odds ratio 15.99546 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####Iberian####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 31.2765, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.08649434 0.09800725 sample estimates: cor 0.09225388 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.211017e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1037036 [1] "==========6.06966314110018e-270=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 4.869724 11.129469 sample estimates: odds ratio 7.415245 [1] "==========7.21879045329832e-18=============" [1] "###############################" [1] "###############################" [1] "####Japanese####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 103.6191, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.2881189 0.2987309 sample estimates: cor 0.2934339 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 1.939084e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2139389 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 20.36614 25.20424 sample estimates: odds ratio 22.65202 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####KOREAN####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 62.0908, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.1752724 0.1865042 sample estimates: cor 0.1808942 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 1.86051e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.2457911 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 9.506638 11.730817 sample estimates: odds ratio 10.5616 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####KOREANfamily####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####Luhya####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = -43.2957, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.1329186 -0.1214948 sample estimates: cor -0.1272109 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.521784e+14, p-value = 5.463e-14 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.02227445 [1] "==========5.46304736987422e-14=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.2699219 0.3006108 sample estimates: odds ratio 0.2848893 [1] "==========0=============" [1] "###############################" [1] "###############################" [1] "####MapMapMexican####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 35.2761, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.09818424 0.10967055 sample estimates: cor 0.1039309 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.172879e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1191639 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 4.350725 5.578668 sample estimates: odds ratio 4.931455 [1] "==========3.40881297394354e-109=============" [1] "###############################" [1] "###############################" [1] "####PuertoRican####NEANDERTAL###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and NeanderMat[, 12] t = 10.2685, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02460229 0.03620329 sample estimates: cor 0.03040381 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and NeanderMat[, 12] S = 2.20544e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1059643 [1] "==========8.20539933929068e-282=============" Fisher's Exact Test for Count Data data: conf p-value = 0.06677 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9890815 1.3197529 sample estimates: odds ratio 1.144958 [1] "==========0.066774340308489=============" [1] "###############################" [1] "###############################" [1] "####ANCESTOR###########" [1] "###############################" [1] "###############################" [1] "####HapMapAfricans####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 7.5577, df = 113961, p-value = 4.13e-14 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01657862 0.02818453 sample estimates: cor 0.02238233 [1] "==========4.13002965160558e-14=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.242523e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09093175 [1] "==========8.84699207251728e-208=============" Fisher's Exact Test for Count Data data: conf p-value = 0.8133 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9428588 1.0771724 sample estimates: odds ratio 1.007993 [1] "==========0.813298133313257=============" [1] "###############################" [1] "###############################" [1] "####CEPHEuropean####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 8.1819, df = 113961, p-value = 4.441e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01842654 0.03003145 sample estimates: cor 0.02422981 [1] "==========4.44089209850063e-16=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.298643e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06818166 [1] "==========1.70481686976428e-117=============" Fisher's Exact Test for Count Data data: conf p-value = 0.1166 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9231497 1.6906790 sample estimates: odds ratio 1.262733 [1] "==========0.116560970404029=============" [1] "###############################" [1] "###############################" [1] "####mixKoreanCEU####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####HanChineseBeijing####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 7.2033, df = 113961, p-value = 5.913e-13 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01552924 0.02713568 sample estimates: cor 0.02133318 [1] "==========5.91304782915358e-13=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.312759e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06245967 [1] "==========7.04067538529987e-99=============" Fisher's Exact Test for Count Data data: conf p-value = 0.09542 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9602444 1.4935210 sample estimates: odds ratio 1.20417 [1] "==========0.0954226642081356=============" [1] "###############################" [1] "###############################" [1] "####HanChineseSouth####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 7.2675, df = 113961, p-value = 3.686e-13 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01571923 0.02732559 sample estimates: cor 0.02152314 [1] "==========3.68594044175552e-13=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.318387e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.0601782 [1] "==========6.51192665216721e-92=============" Fisher's Exact Test for Count Data data: conf p-value = 0.147 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9301004 1.4908984 sample estimates: odds ratio 1.185123 [1] "==========0.146978181269308=============" [1] "###############################" [1] "###############################" [1] "####Colombian####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 4.614, df = 113961, p-value = 3.955e-06 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.00786120 0.01947076 sample estimates: cor 0.01366644 [1] "==========3.95491357996214e-06=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.177344e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1173538 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value = 0.2961 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.657866 1.119164 sample estimates: odds ratio 0.865285 [1] "==========0.296114283157955=============" [1] "###############################" [1] "###############################" [1] "####HapMapFinnish####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 11.1275, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02714393 0.03874306 sample estimates: cor 0.0329446 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.29721e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06876263 [1] "==========1.77791470864333e-119=============" Fisher's Exact Test for Count Data data: conf p-value = 0.003557 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.131633 1.904115 sample estimates: odds ratio 1.479207 [1] "==========0.00355694321731651=============" [1] "###############################" [1] "###############################" [1] "####British####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 9.3452, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.02186989 0.03347273 sample estimates: cor 0.02767224 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.298877e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06808685 [1] "==========3.57678621785983e-117=============" Fisher's Exact Test for Count Data data: conf p-value = 0.0001334 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.285308 2.141259 sample estimates: odds ratio 1.671021 [1] "==========0.000133385354326485=============" [1] "###############################" [1] "###############################" [1] "####Iberian####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 4.01, df = 113961, p-value = 6.076e-05 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.006072263 0.017682356 sample estimates: cor 0.01187771 [1] "==========6.07642964403077e-05=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.344188e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.049719 [1] "==========2.67545826490135e-63=============" Fisher's Exact Test for Count Data data: conf p-value = 0.6138 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.3839085 2.9092341 sample estimates: odds ratio 1.207294 [1] "==========0.613795025102928=============" [1] "###############################" [1] "###############################" [1] "####Japanese####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 8.6001, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.01966453 0.03126873 sample estimates: cor 0.02546749 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.305663e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.06533618 [1] "==========4.94218898401944e-108=============" Fisher's Exact Test for Count Data data: conf p-value = 0.004125 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.114714 1.785099 sample estimates: odds ratio 1.419424 [1] "==========0.00412459209547937=============" [1] "###############################" [1] "###############################" [1] "####KOREAN####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = -8.6276, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: -0.03134986 -0.01974570 sample estimates: cor -0.02554864 [1] "==========6.34643047353419e-18=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.524961e+14, p-value = 1.787e-15 alternative hypothesis: true rho is not equal to 0 sample estimates: rho -0.02356246 [1] "==========1.78657292770906e-15=============" Fisher's Exact Test for Count Data data: conf p-value = 0.004764 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.109410 1.765944 sample estimates: odds ratio 1.408204 [1] "==========0.0047644020146655=============" [1] "###############################" [1] "###############################" [1] "####KOREANfamily####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = NA, df = 113961, p-value = NA alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: NA NA sample estimates: cor NA [1] "==========NA=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = NA, p-value = NA alternative hypothesis: true rho is not equal to 0 sample estimates: rho NA [1] "==========NA=============" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####Luhya####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 14.1257, df = 113961, p-value < 2.2e-16 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.03601027 0.04760170 sample estimates: cor 0.04180739 [1] "==========0=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.227198e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09714391 [1] "==========5.5895132541976e-237=============" Fisher's Exact Test for Count Data data: conf p-value = 0.5433 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9583946 1.0840425 sample estimates: odds ratio 1.019272 [1] "==========0.543339628492115=============" [1] "###############################" [1] "###############################" [1] "####MapMapMexican####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 2.0166, df = 113961, p-value = 0.04374 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.0001676027 0.0117789199 sample estimates: cor 0.005973463 [1] "==========0.0437433653883386=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.223255e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.09874244 [1] "==========8.24984306553534e-245=============" Fisher's Exact Test for Count Data data: conf p-value = 0.04167 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5090666 0.9912075 sample estimates: odds ratio 0.7201113 [1] "==========0.0416695063608572=============" [1] "###############################" [1] "###############################" [1] "####PuertoRican####ANCESTOR###########" [1] "###############################" Pearson's product-moment correlation data: SubPopCorMat[, pop] and AncestMat[, 12] t = 4.5373, df = 113961, p-value = 5.703e-06 alternative hypothesis: true correlation is not equal to 0 95 percent confidence interval: 0.007634225 0.019243859 sample estimates: cor 0.01343949 [1] "==========5.70291622548069e-06=============" Spearman's rank correlation rho data: SubPopCorMat[, pop] and AncestMat[, 12] S = 2.164977e+14, p-value < 2.2e-16 alternative hypothesis: true rho is not equal to 0 sample estimates: rho 0.1223671 [1] "==========0=============" Fisher's Exact Test for Count Data data: conf p-value = 0.1351 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.9527871 1.3868034 sample estimates: odds ratio 1.153986 [1] "==========0.135097338172004=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 2###########" [1] "###############################" [1] "###############################" [1] "####HapMapAfricans####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.4713153 0.5857694 sample estimates: odds ratio 0.5259108 [1] "==========1.25520289139374e-35=============" [1] "###############################" [1] "###############################" [1] "####CEPHEuropean####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1.451e-09 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.999047 3.609188 sample estimates: odds ratio 2.712584 [1] "==========1.450631364574e-09=============" [1] "###############################" [1] "###############################" [1] "####mixKoreanCEU####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####HanChineseBeijing####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 8.954095 11.688134 sample estimates: odds ratio 10.2446 [1] "==========3.1934711844044e-170=============" [1] "###############################" [1] "###############################" [1] "####HanChineseSouth####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 7.867137 10.506589 sample estimates: odds ratio 9.101957 [1] "==========3.39312090515366e-131=============" [1] "###############################" [1] "###############################" [1] "####Colombian####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.4953 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5817846 1.2301786 sample estimates: odds ratio 0.861006 [1] "==========0.495344705925417=============" [1] "###############################" [1] "###############################" [1] "####HapMapFinnish####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1.953e-13 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.282778 3.855839 sample estimates: odds ratio 2.989197 [1] "==========1.95322137748968e-13=============" [1] "###############################" [1] "###############################" [1] "####British####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 9.04e-14 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 2.362811 4.026125 sample estimates: odds ratio 3.108312 [1] "==========9.04002219418801e-14=============" [1] "###############################" [1] "###############################" [1] "####Iberian####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.001429 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.666270 8.129022 sample estimates: odds ratio 3.967493 [1] "==========0.00142923996097206=============" [1] "###############################" [1] "###############################" [1] "####Japanese####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 7.678624 10.478076 sample estimates: odds ratio 8.985893 [1] "==========2.42803049466568e-112=============" [1] "###############################" [1] "###############################" [1] "####KOREAN####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 13.66698 17.81356 sample estimates: odds ratio 15.62009 [1] "==========5.78190011849957e-234=============" [1] "###############################" [1] "###############################" [1] "####KOREANfamily####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####Luhya####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.3838163 0.4610553 sample estimates: odds ratio 0.4208231 [1] "==========4.13608716706465e-84=============" [1] "###############################" [1] "###############################" [1] "####MapMapMexican####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.0004223 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.282979 2.362231 sample estimates: odds ratio 1.760132 [1] "==========0.000422281613536404=============" [1] "###############################" [1] "###############################" [1] "####PuertoRican####DENISOVA 2###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.8363 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.7153134 1.2649460 sample estimates: odds ratio 0.9605794 [1] "==========0.836252052698655=============" [1] "###############################" [1] "###############################" [1] "####DENISOVA 3###########" [1] "###############################" [1] "###############################" [1] "####HapMapAfricans####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 5.602e-07 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5737924 0.7951261 sample estimates: odds ratio 0.6773751 [1] "==========5.60207067234264e-07=============" [1] "###############################" [1] "###############################" [1] "####CEPHEuropean####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.3468 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5860867 3.0912209 sample estimates: odds ratio 1.475035 [1] "==========0.346756653101362=============" [1] "###############################" [1] "###############################" [1] "####mixKoreanCEU####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####HanChineseBeijing####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 9.362928 14.559946 sample estimates: odds ratio 11.71995 [1] "==========2.11362595513291e-68=============" [1] "###############################" [1] "###############################" [1] "####HanChineseSouth####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 8.65121 13.38470 sample estimates: odds ratio 10.80273 [1] "==========6.32487643287742e-66=============" [1] "###############################" [1] "###############################" [1] "####Colombian####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.3258 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.3082229 1.2969954 sample estimates: odds ratio 0.6779204 [1] "==========0.325799710363121=============" [1] "###############################" [1] "###############################" [1] "####HapMapFinnish####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.0009564 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.488100 4.734157 sample estimates: odds ratio 2.76487 [1] "==========0.000956363764417181=============" [1] "###############################" [1] "###############################" [1] "####British####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.5102 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.5125564 2.6945760 sample estimates: odds ratio 1.288283 [1] "==========0.510242340144575=============" [1] "###############################" [1] "###############################" [1] "####Iberian####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.05266 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.7385717 11.7091325 sample estimates: odds ratio 3.731449 [1] "==========0.0526611189244947=============" [1] "###############################" [1] "###############################" [1] "####Japanese####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 7.057263 12.022348 sample estimates: odds ratio 9.268252 [1] "==========3.8148477289725e-40=============" [1] "###############################" [1] "###############################" [1] "####KOREAN####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 14.01431 18.46452 sample estimates: odds ratio 16.10345 [1] "==========9.53707504586283e-221=============" [1] "###############################" [1] "###############################" [1] "####KOREANfamily####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 1 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0 Inf sample estimates: odds ratio 0 [1] "==========1=============" [1] "###############################" [1] "###############################" [1] "####Luhya####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value < 2.2e-16 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.4754415 0.5903696 sample estimates: odds ratio 0.5302662 [1] "==========6.62116245203498e-35=============" [1] "###############################" [1] "###############################" [1] "####MapMapMexican####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.00391 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 1.247704 3.318184 sample estimates: odds ratio 2.095497 [1] "==========0.00391038761186891=============" [1] "###############################" [1] "###############################" [1] "####PuertoRican####DENISOVA 3###########" [1] "###############################" Fisher's Exact Test for Count Data data: conf p-value = 0.1497 alternative hypothesis: true odds ratio is not equal to 1 95 percent confidence interval: 0.880634 1.945959 sample estimates: odds ratio 1.334869 [1] "==========0.149749415791789=============" [1] "###############################"