##fileformat=VCFv4.1 ##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies"> ##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3"> ##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2."> ##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples."> ##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2."> ##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2."> ##samtoolsVersion=0.1.13 (r926:134) ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth"> ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> ##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads"> ##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability that sample omosomes are not all the same"> ##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the site allele frequency of the first ALT allele"> ##INFO=<ID=CI95,Number=2,Type=Float,Description="Equal-tail Bayesian credible interval of the site allele frequency at the 95% level"> ##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias"> ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases"> ##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value"> ##FORMAT=<ID=PL,Number=.,Type=Integer,Description="List of Phred-scaled genotype likelihoods, number of values is (#ALT+1)*(#ALT+2)|1"> ##INFO=<ID=SF,Number=.,Type=String,Description="Source File (index to sourceFiles, f when filtered)"> ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT KPGP10 KPGP117 KPGP11 KPGP120 KPGP121 KPGP122 KPGP124 KPGP125 KPGP127 KPGP128 KPGP129 KPGP12 KPGP131 KPGP132 KPGP134 KPGP136 KPGP137 KPGP138 KPGP139 KPGP141 KPGP142 KPGP144 KPGP145 KPGP1 KPGP2 KPGP32 KPGP33 KPGP3 KPGP4 KPGP5 KPGP6 KPGP7 KPGP88 KPGP89 KPGP8 KPGP90 KPGP91 KPGP97 KPGP9