Ulrich Bodenhofer's Publications
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Articles in Refereed International Journals
@article{Bodenhofer99e,
author = {U. Bodenhofer},
title = {A new approach to fuzzy orderings},
journal = {Tatra Mt. Math. Publ.},
year = 1999,
volume = 16,
pages = {21--29},
pdf = {http://www.bioinf.jku.at/people/bodenhofer/private/publications/pdf/Bodenhofer99e.pdf}
}
@article{Bodenhofer00,
author = {U. Bodenhofer},
title = {A similarity-based generalization of fuzzy orderings
preserving the classical axioms},
journal = {Internat. J. Uncertain. Fuzziness Knowledge-Based
Systems},
pages = {593--610},
volume = 8,
number = 5,
year = 2000,
doi = {10.1142/S0218488500000411}
}
@article{DrobicsBodenhoferWiniwarter02,
author = {M. Drobics and U. Bodenhofer and W. Winiwarter},
title = {Mining Clusters and Corresponding Interpretable
Descriptions --- A Three-Stage Approach },
journal = {Expert Systems},
volume = 19,
number = 4,
year = 2002,
pages = {224--234},
doi = {10.1111/1468-0394.00207}
}
@article{BurgerHaslingerBodenhoferEngl02,
author = {M. Burger and J. Haslinger and U. Bodenhofer and
H. W. Engl},
title = {Regularized Data-Driven Construction of Fuzzy
Controllers},
journal = {J. Inverse Ill-Posed Probl.},
volume = 10,
number = 4,
pages = {319--344},
year = 2002
}
@article{SamingerMesiarBodenhofer02,
author = {S. Saminger and R. Mesiar and U. Bodenhofer},
title = {Domination of aggregation operators and preservation
of transitivity},
journal = {Internat. J. Uncertain. Fuzziness Knowledge-Based
Systems},
pages = {11--35},
volume = 10,
number = {Suppl.},
year = 2002,
doi = {10.1142/S0218488502001806}
}
@article{Bodenhofer03c,
author = {U. Bodenhofer},
title = {A note on approximate equality versus the
{Poincar\'e} paradox},
journal = {Fuzzy Sets and Systems},
volume = 133,
number = 2,
year = 2003,
pages = {155--160},
doi = {10.1016/S0165-0114(02)00240-3}
}
@article{DrobicsBodenhoferKlement03,
author = {M. Drobics and U. Bodenhofer and E. P. Klement},
title = {{FS-FOIL}: An Inductive Learning Method for
Extracting Interpretable Fuzzy Descriptions},
journal = {Internat. J. Approx. Reason.},
volume = 32,
number = {2--3},
pages = {131--152},
year = 2003,
doi = {10.1016/S0888-613X(02)00080-4}
}
@article{Bodenhofer03d,
author = {U. Bodenhofer},
title = {A unified framework of opening and closure operators
with respect to arbitrary fuzzy relations},
journal = {Soft Computing},
volume = 7,
year = 2003,
pages = {220--227},
doi = {10.1007/s00500-002-0208-4}
}
@article{Bodenhofer03b,
author = {U. Bodenhofer},
title = {Representations and constructions of
similarity-based fuzzy orderings},
journal = {Fuzzy Sets and Systems},
year = 2003,
volume = 137,
number = 1,
pages = {113--136},
doi = {10.1016/S0165-0114(02)00436-0}
}
@article{BodenhoferDeCockKerre03,
author = {U. Bodenhofer and M. {De Cock} and E. E. Kerre},
title = {Openings and closures of fuzzy preorderings:
theoretical basics and applications to fuzzy
rule-based systems},
journal = {Int. J. General Systems},
volume = 32,
number = 4,
pages = {343--360},
year = 2003,
doi = {10.1080/0308107031000135026}
}
@article{BodenhoferKlawonn04,
author = {U. Bodenhofer and F. Klawonn},
title = {A formal study of linearity axioms for fuzzy
orderings},
journal = {Fuzzy Sets and Systems},
volume = 145,
number = 3,
pages = {323--354},
year = 2004,
doi = {10.1016/S0165-0114(03)00128-3}
}
@article{BodenhoferKueng04,
author = {U. Bodenhofer and J. K\"ung},
title = {Fuzzy Orderings in Flexible Query Answering Systems},
journal = {Soft Computing},
volume = 8,
number = 7,
pages = {512--522},
year = 2004,
doi = {10.1007/s00500-003-0308-9}
}
@article{BodenhoferBauer05,
author = {U. Bodenhofer and P. Bauer},
title = {Interpretability of Linguistic Variables: A Formal
Account},
journal = {Kybernetika},
year = 2005,
volume = 41,
number = 2,
pages = {227--248},
pdf = {http://www.kybernetika.cz/content/2005/2/227/paper.pdf}
}
@article{BodenhoferDeBaetsFodor07,
author = {U. Bodenhofer and B. {De Baets} and J. Fodor},
title = {A compendium of fuzzy weak orders: Representations
and constructions},
journal = {Fuzzy Sets and Systems},
year = 2007,
volume = 158,
number = 8,
pages = {811--829},
doi = {10.1016/j.fss.2006.10.005}
}
@article{BehounekBodenhoferCintula08,
author = {L. B\v{e}hounek and U. Bodenhofer and P. Cintula},
title = {Relations in {F}uzzy {C}lass {T}heory: Initial
steps},
journal = {Fuzzy Sets and Systems},
year = 2008,
volume = 159,
number = 14,
pages = {1729--1772},
doi = {10.1016/j.fss.2007.10.012}
}
@article{BodenhoferDemirci08,
author = {U. Bodenhofer and M. Demirci},
title = {Strict fuzzy orderings with a given context of
similarity},
journal = {Internat. J. Uncertain. Fuzziness Knowledge-Based
Systems},
volume = 16,
number = 2,
pages = {147--178},
year = 2008,
doi = {10.1142/S021848850800511X}
}
@article{BodenhoferKlawonn08,
author = {U. Bodenhofer and F. Klawonn},
title = {Robust rank correlation coefficients on the basis of
fuzzy orderings: initial steps},
journal = {Mathware Soft Comput.},
volume = 15,
number = 1,
pages = {5--20},
year = 2008,
url = {http://ic.ugr.es/Mathware/index.php/Mathware/article/view/25},
pdf = {http://www.bioinf.jku.at/people/bodenhofer/private/publications/pdf/BodenhoferKlawonn08.pdf}
}
@article{Bodenhofer08,
author = {U. Bodenhofer},
title = {Orderings of fuzzy sets based on fuzzy
orderings. part {I}: the basic approach},
journal = {Mathware Soft Comput.},
volume = 15,
number = 2,
year = 2008,
pages = {201--218},
url = {http://ic.ugr.es/Mathware/index.php/Mathware/article/view/30},
pdf = {http://www.bioinf.jku.at/people/bodenhofer/private/publications/pdf/Bodenhofer08.pdf}
}
@article{Bodenhofer08b,
author = {U. Bodenhofer},
title = {Orderings of fuzzy sets based on fuzzy
orderings. part {II}: generalizations},
journal = {Mathware Soft Comput.},
volume = 15,
number = 3,
year = 2008,
pages = {219--249},
url = {http://ic.ugr.es/Mathware/index.php/Mathware/article/view/354},
pdf = {http://www.bioinf.jku.at/people/bodenhofer/private/publications/pdf/Bodenhofer08b.pdf}
}
@article{SoukupBodenhoferMittendorfer-HolzerMayer09,
author = {D. Soukup and U. Bodenhofer and
M. Mittendorfer-Holzer and K. Mayer},
title = {Semi-automatic identification of print layers from a
sequence of sample images: a case study from
banknote print inspection},
journal = {Image Vision Comput.},
year = 2009,
volume = 27,
number = 8,
pages = {989--998},
doi = {10.1016/j.imavis.2008.08.008}
}
@article{StepnickaBodenhoferDankovaNovak10,
author = {M. \v{S}t\v{e}pni\v{c}ka and U. Bodenhofer and
M. Da\v{n}kov\'{a} and V. Nov\'{a}k},
title = {Continuity issues of the implicational
interpretation of fuzzy rules},
journal = {Fuzzy Sets and Systems},
volume = 161,
number = 14,
pages = {1959--1972},
year = 2010,
doi = {10.1016/j.fss.2010.03.009}
}
@article{HochreiterBodenhoferHeuselMayrMittereckerKasimKhamiakova10,
author = {S. Hochreiter and U. Bodenhofer and M. Heusel and
A. Mayr and A. Mitterecker and A. Kasim and
T. Khamiakova and S. {Van Sanden} and D. Lin and
W. Talloen and L. Bijnens and H. W. H. G\"ohlmann
and Z. Shkedy and D.-A. Clevert},
title = {{FABIA:} factor analysis for bicluster acquisition},
journal = {Bioinformatics},
volume = 26,
number = 12,
pages = {1520--1527},
year = 2010,
doi = {10.1093/bioinformatics/btq227}
}
@article{MahrenholzAbfalterBodenhoferVolkmerHochreiter11,
author = {C. C. Mahrenholz and I. G. Abfalter and
U. Bodenhofer and R. Volkmer and S. Hochreiter},
title = {Complex networks govern coiled coil oligomerization
--- Predicting and profiling by means of a machine
learning approach},
journal = {Mol. Cell. Proteomics},
year = 2011,
volume = 10,
number = 5,
pages = {M110.004994},
doi = {10.1074/mcp.M110.004994}
}
@article{BodenhoferKothmeierHochreiter11,
author = {U. Bodenhofer and A. Kothmeier and S. Hochreiter},
title = {{APCluster:} an {R} package for affinity propagation
clustering},
journal = {Bioinformatics},
volume = 27,
number = 17,
pages = {2463--2464},
year = 2011,
doi = {10.1093/bioinformatics/btr406}
}
@article{KlambauerSchwarzbauerMayrClevertMittereckerBodenhoferHochreiter12,
author = {G. Klambauer and K. Schwarzbauer and A. Mayr and
D.-A. Clevert and A. Mitterecker and U. Bodenhofer
and S. Hochreiter},
title = {{cn.MOPS:} mixture of {Poissons} for discovering
copy number variations in next-generation sequencing
data with a low false discovery rate},
journal = {Nucleic Acids Res.},
year = 2012,
doi = {10.1093/nar/gks003},
volume = 40,
number = 9,
pages = {e69}
}
@article{SchwarzbauerBodenhoferHochreiter12,
author = {K. Schwarzbauer and U. Bodenhofer and S. Hochreiter},
title = {Genome-Wide Chromatin Remodeling Identified at
{GC}-Rich Long Nucleosome-Free Regions},
journal = {PLoS ONE},
year = 2012,
doi = {10.1371/journal.pone.0047924},
volume = 7,
number = 11,
pages = {e47924}
}
@article{BodenhoferKroneKlawonn13,
author = {U. Bodenhofer and M. Krone and F. Klawonn},
title = {Testing noisy numerical data for monotonic
association},
journal = {Inform. Sci.},
volume = 245,
pages = {21--37},
year = 2013,
doi = {10.1016/j.ins.2012.11.026}
}
@article{LippJuhaszPaarOgrisEckerstorferThuenauerHesse14,
author = {A. M. Lipp and K. Juhasz and C. Paar and C. Ogris
and P. Eckerstorfer and R. Thuenauer and J. Hesse
and B. Nimmervoll and H. Stockinger and
G. J. Sch\"utz and U. Bodenhofer and Z. Balogi and
A. Sonnleitner},
title = {{Lck} Mediates Signal Transmission from {CD59} to
the {TCR/CD3} Pathway in {Jurkat T} Cells},
journal = {PLoS ONE},
year = 2014,
doi = {10.1371/journal.pone.0085934},
volume = 9,
number = 1,
pages = {e85934}
}
@article{BehounekBodenhoferCintulaSaminger-PlatzSarkoci15,
author = {L. B\v{e}hounek and U. Bodenhofer and P. Cintula and
S. Saminger-Platz and P. Sarkoci},
title = {Graded dominance and related graded properties of
fuzzy connectives},
journal = {Fuzzy Sets and Systems},
doi = {10.1016/j.fss.2014.04.025},
volume = 262,
pages = {78--101},
year = 2015
}
@article{RavindranathPerualila-TanKasimDrakakisLiggiBrewertonMason15,
author = {A. C. Ravindranath and N. Perualila-Tan and A. Kasim
and G. Drakakis and S. Liggi and S. C. Brewerton and
D.~Mason and M. J. Bodkin and D. A. Evans and
A. Bhagwat and W. Talloen and H. W. G\"ohlmann and
Z. Shkedy and A. Bender and {The QSTAR Consortium}},
title = {Connecting gene expression data from connectivity
map and in silico target predictions for small
molecule mechanism-of-action analysis},
journal = {Mol. Biosyst.},
doi = {10.1039/C4MB00328D},
volume = 11,
number = 1,
pages = {86--96},
year = 2015
}
@article{VerbistKlambauerVervoortTalloenQStarConsortiumShkedyBender15,
author = {B. Verbist and G. Klambauer and L. Vervoort and
W. Talloen and {The QSTAR Consortium} and Z. Shkedy
and O. Thas and A. Bender and H. W. G\"ohlmann and
S. Hochreiter},
title = {Using transcriptomics to guide lead optimization in
drug discovery projects: Lessons learned from the
{QSTAR} project},
journal = {Drug Discov. Today},
doi = {10.1016/j.drudis.2014.12.014},
volume = 20,
number = 5,
pages = {505--513},
year = 2015
}
@article{PalmeHochreiterBodenhofer15,
author = {J. Palme and S. Hochreiter and U. Bodenhofer},
title = {{KeBABS}: an {R} package for kernel-based analysis
of biological sequences},
journal = {Bioinformatics},
year = 2015,
volume = 31,
number = 15,
pages = {2574--2576},
doi = {10.1093/bioinformatics/btv176}
}
@article{VerbistVerheyenVervoortCrabbeBeerensBosmansJaensch15,
author = {B. M. P. Verbist and G. R. Verheyen and L. Vervoort
and M. Crabbe and D. Beerens and C. Bosmans and
S. Jaensch and S. Osselaer and W. Talloen and
I. {Van den Wyngaert} and G. {Van Hecke} and
D. Wuyts and {The QSTAR Consortium} and F. {Van
Goethem} and H. W. H. G\"ohlmann},
title = {Integrating high-dimensional transcriptomics and
image analysis tools into early safety screening:
proof of concept for a new early drug development
strategy},
journal = {Chem. Res. Toxicol.},
doi = {10.1021/acs.chemrestox.5b00103},
volume = 28,
number = 10,
pages = {1914--1925},
year = 2015
}
@article{BodenhoferBonatestaHorejs-KainrathHochreiter15,
author = {U. Bodenhofer and E. Bonatesta and
C. Horej\v{s}-Kainrath and S. Hochreiter},
title = {{msa}: an {R} package for multiple sequence
alignment},
journal = {Bioinformatics},
doi = {10.1093/bioinformatics/btv494},
volume = 31,
number = 24,
pages = {3997--3999},
year = 2015
}
@article{ZehentmayrHauser-KronbergerZellingerHlubekSchusterBodenhoferFastner16,
author = {F. Zehentmayr and C. Hauser-Kronberger and
B. Zellinger and F. Hlubek and C. Schuster and
U. Bodenhofer and G. Fastner and H. Deutschmann and
P. Steininger and R. Reitsamer and T. Fischer and
F. Sedlmayer},
title = {{Hsa-miR-375} is a predictor of local control in
early stage breast cancer},
journal = {Clin. Epigenetics},
doi = {10.1186/s13148-016-0198-1},
volume = 8,
pages = 28,
year = 2016
}
@article{Perualila-TanKasimTalloenVerbistGoehlmannShkedy16,
author = {N. Perualila-Tan and A. Kasim and W. Talloen and
B. Verbist and H. W. H. G\"ohlmann and {The QSTAR Consortium} and Z. Shkedy},
title = {A joint modeling approach for uncovering
associations between gene expression, bioactivity
and chemical structure in early drug discovery to
guide lead selection and genomic biomarker
development},
journal = {Stat. Appl. Genet. Mol. Biol.},
doi = {10.1515/sagmb-2014-0086},
volume = 15,
number = 4,
pages = {291--304},
year = 2016
}
@article{Perualila-TanShkedyTalloenGoehlmannMoerbekeKasim16,
author = {N. Perualila-Tan and Z. Shkedy and W. Talloen and
H. W. H. G\"ohlmann and {The QSTAR Consortium} and
M. V. Moerbeke and A. Kasim},
title = {Weighted similarity-based clustering of chemical
structures and bioactivity data in early drug
discovery},
journal = {J. Bioinform. Comput. Biol.},
volume = 14,
pages = 1650018,
doi = {10.1142/S0219720016500189},
year = 2016
}
@article{KhalediSchniederjansPohlRainerBodenhoferXiaKlawonn16,
author = {A. Khaledi and M. Schniederjans and S. Pohl and
R. Rainer and U. Bodenhofer and B. Xia and
F. Klawonn and S. Bruchmann and M. Preusse and
D. Eckweiler and A. D\"otsch and S. H\"aussler},
title = {Transcriptome profiling of antimicrobial resistance
in {\em {P}seudomonas aeruginosa}},
journal = {Antimicrob. Agents Chemother.},
volume = 60,
number = 8,
pages = {4722--4733},
doi = {10.1128/AAC.00075-16},
year = 2016
}
@article{GreiffWeberPalmeBodenhoferMihoMenzelReddy17,
author = {V. Greiff and C. R. Weber and J. Palme and
U. Bodenhofer and E. Miho and U. Menzel and
S. T. Reddy},
title = {Learning the high-dimensional immunogenomic features
that predict public and private antibody
repertoires},
journal = {J. Immunol.},
doi = {10.4049/jimmunol.1700594},
volume = 199,
number = 8,
pages = {2985--2997},
year = 2017
}
@article{FischerFreulingMuellerPfaffBodenhoferHoeperFischer18,
author = {S. Fischer and C. M. Freuling and T. M\"uller and
F. Pfaff and U. Bodenhofer and D. H\"oper and
M. Fischer and D. A. Marston and A. R. Fooks and
T. C. Mettenleitner and F. J. Conraths and
T. Homeier-Bachmann},
title = {Defining objective clusters for rabies virus
sequences using affinity propagation clustering},
journal = {PLoS Neglect. Trop. Dis.},
volume = 12,
number = 1,
pages = {e0006182},
doi = {10.1371/journal.pntd.0006182},
year = 2018
}
@article{SteinwandterSismisSagmeisterBodenhoferHerwig18,
author = {V. Steinwandter and M. \v{S}i\v{s}mi\v{s} and
P. Sagmeister and U. Bodenhofer and C. Herwig},
title = {Multivariate analytics of chromatographic data:
Visual computing based on moving window factor
models},
journal = {J. Chromatogr. B.},
volume = 1092,
pages = {179--190},
doi = {10.1016/j.jchromb.2018.06.010},
year = 2018
}
@article{VanNieuwenhoveLagouVanEyckDooleyBodenhoferRocaVandebergh19,
author = {E. {Van Nieuwenhove} and V. Lagou and L. {Van Eyk}
and J. Dooley and U. Bodenhofer and C. Roca and
M. Vandebergh and A. Goris and S. {Humblet-Baron}
and C. Wouters and A. Liston},
title = {Machine learning identifies an immunological pattern
associated with multiple juvenile idiopathic
arthritis subtypes},
journal = {Ann. Rheum. Dis.},
volume = 78,
number = 5,
pages = {617--628},
doi = {10.1136/annrheumdis-2018-214354},
year = 2019
}
@article{ZellingerBodenhoferEnglaenderKronbergerStrasserGrambozovFastner20,
author = {B. Zellinger and U. Bodenhofer and I. A. Engl\"ander
and C. Kronberger and P. Strasser and B. Grambozov
and G. Fastner and M. Stana and R. Reitsamer and
K. Sotlar and F. Sedlmayer and F. Zehentmayr},
title = {{Hsa-miR-375/RASD1} signaling may predict local
control in early breast cancer},
journal = {Genes},
doi = {10.3390/genes11121404},
volume = 11,
pages = 1404,
year = 2020
}
@article{BodenhoferHaslinger-EistererMinichmayerHermanutzMeier21,
author = {U. Bodenhofer and B. Haslinger-Eisterer and
A. Minichmayer and G. Hermanutz and J. Meier},
title = {Machine learning-based risk profile classification
of patients undergoing elective heart valve surgery},
journal = {Eur. J. Cardiothorac. Surg.},
volume = 60,
number = 6,
pages = {1378--1385},
doi = {10.1093/ejcts/ezab219},
year = 2021
}
@article{MeierTschoellitschBodenhoferDuenser21,
author = {J. Meier and T. Tschoellitsch and U. Bodenhofer and
M. W. D\"unser},
title = {Randomised controlled trials should be analysed
using one-sided tests: pro},
journal = {Anaesth. Crit. Care Pain Med.},
volume = 40,
number = 6,
pages = 100981,
doi = {10.1016/j.accpm.2021.100981},
year = 2021
}
@article{ZellingerBodenhoferEnglaenderKronbergerGrambozovRuznicStana22,
author = {B. Zellinger and U. Bodenhofer and I. A. Engl\"ander
and C. Kronberger and B. Grambozov and E. Ruznic and
M. Stana and J. Karner and G. Fastner and K. Sotlar
and F. Sedlmayer and F. Zehentmayr},
title = {{Hsa-miR-3651} could serve as a novel predictor for
in-breast recurrence via {FRMD3}},
journal = {Breast Cancer},
volume = 29,
number = 2,
pages = {274--286},
doi = {10.1007/s12282-021-01308-y},
year = 2022
}
@article{SuessnerNiklasBodenhoferMeier22,
author = {S. Suessner and N. Niklas and U. Bodenhofer and
J. Meier },
title = {Machine learning-based prediction of fainting during
blood donations using donor properties and weather
data as features},
journal = {BMC Medical Inform. Decis. Mak.},
volume = 22,
pages = 222,
doi = {10.1186/s12911-022-01971-x},
year = 2022
}
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