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Title: Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank and the Connectivity Map
Author(s): Günter Klambauer, Martin Wischenbart, Michael Mahr, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter
Published: Bioinformatics, Advance Access published June 17, 2015
Download: PDF
Abstract: Abstract
Title: KeBABS: an R package for kernel-based analysis of biological sequences
Author(s): Johannes Palme, Sepp Hochreiter, Ulrich Bodenhofer
Published: Bioinformatics, 31(15):2574-2576, 2015 doi:10.1093/bioinformatics/btv176
Download: PDF
Abstract: Abstract
Title: Using transcriptomics to guide lead optimization in drug discovery projects
Author(s): Bie Verbist, Günter Klambauer, Liesbet Vervoort, Willem Talloen, QSTAR Consortium, Ziv Shkedy, Olivier Thas, Andreas Bender, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published: Drug Discovery Today, 20(5):505-513, 2015 doi:10.1016/j.drudis.2014.12.014
Title: Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis
Author(s): Aakash Chavan Ravindranath, Nolen Perualila-Tan, Adetayo Kasim, Georgios Drakakis, Sonia Liggi, Suzanne C. Brewerton, Daniel Mason, Michael J. Bodkin, David A. Evans, Aditya Bhagwat, Willem Talloen, Hinrich W. H. Göhlmann, QSTAR Consortium, Ziv Shkedy, Andreas Bender
Published: Mol. BioSyst., 11:86-96, 2015 doi:10.1039/C4MB00328D
Download: Abstract
Title: Graded dominance and related graded properties of fuzzy connectives
Author(s): Libor Behounek, Ulrich Bodenhofer, Petr Cintula, Susanne Saminger-Platz, Peter Sarkoci
Published: Fuzzy Sets and Systems, 262:78-101, 2015 doi:10.1016/j.fss.2014.04.025


Books/Book Chapters

Publications (non-peer-reviewed)

Title: Toxicity Prediction using Deep Learning
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Sepp Hochreiter
Published:, Mar 2015
Download: arXiv:1503.01445 [stat.ML]
Title: Rectified Factor Networks
Author(s): Djork-Arné Clevert, Thomas Unterthiner, Andreas Mayr, Hubert Ramsauer, Sepp Hochreiter
Published:, Feb 2015
Download: arXiv:1502.06464 [cs.LG]


Title: Similarity-based clustering of big data: A parallel ensemble variant of leveraged affinity propagation
Published: Master Thesis, 2015
Author(s): Chrats Melkonian
Title: Development, application and analysis of a pipeline for genotype-to-phenotype whole-genome based predictions
Published: Master Thesis, 2015
Author(s): Roman Josef Rainer
Title: A copy number analysis and genome-wide association study of schizophrenia data
Published: Master Thesis, 2015
Author(s): Nadine Stein
Title: KeBABS - An R Package for Kernel-Based Analysis of Biological Sequences
Published: Master Thesis, 2015
Author(s): Johannes Palme
Title: Inferring Regulatory Interactions from Microarray Data Using the FABIA Biclustering Method: A Case Study for E.coli K-12
Published: Master Thesis, 2015
Author(s): Wilhelm Lichtberger
Title: Detecting CNVs in the 1000 Genomes Project Data Using cn.MOPS and Relating the Results to Transcriptome Sequencing Data
Published: Master Thesis, 2015
Author(s): Anna Maria Langmüller