Publications

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Journals

Title: Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures
Published: Accepted for publication in Nature Communications, 2014
Author(s): Sarah A. Munro, Steve P. Lund, P. Scott Pine, Hans Binder, Djork-Arné Clevert, Ana Conesa, Joaquin Dopazo, Mario Fasold, Sepp Hochreiter, Huixiao Hong, Nederah Jafari, David P. Kreil, Pawel P. Labaj, Sheng Li, Yang Liao, Simon Lin, Joseph Meehan, Christopher E. Mason, Javier Santoyo, Robert A. Setterquist, Leming Shi, Wei Shi, Gordon K. Smyth, Nancy Stralis-Pavese, Zhenqiang Su, Weida Tong, Charles Wang, Jian Wang, Joshua Xu, Zhan Ye, Yong Yang, Ying Yu, Marc Salit
Download: ArXiv Preprint
 
Title: A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Published: Nature Biotechnology, published online 24 August 2014 doi:10.1038/nbt.2957
Author(s): SEQC/MAQC-III Consortium
Download: Full Text
 
Title: Furby: fuzzy force-directed bicluster visualization
Published: BMC Bioinformatics, 15(Suppl 6):S4, 2014 doi:10.1186/1471-2105-15-S6-S4
Author(s): Marc Streit, Samuel Gratzl, Michael Gillhofer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter
Download: Abstract
Full Text
 
Title: Lck Mediates Signal Transmission from CD59 to the 1 TCR/CD3 Pathway in Jurkat T Cells
Published: PLoS ONE, 9(1):e85934, 2014 doi:10.1371/journal.pone.0085934
Author(s): Anna-M. Lipp, Kata Juhasz, Christian Paar, Christoph Ogris, Paul Eckerstorfer, Roland Thuenauer, Jan Hesse, Benedikt Nimmervoll, Hannes Stockinger, Gerhard J. Schütz, Ulrich Bodenhofer, Zsolt Balogi, Alois Sonnleitner
Abstract: PDF
 



Conferences



Books/Book Chapters



Publications (non-peer-reviewed)

Title: FABIA: A Probabilistic Model for Biclustering and its Application to Analyzing Big Data in Drug Design
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Author(s): Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter
 
Title: Detecting biomarkers on label-free mass spectrometry data using biclustering
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Author(s): Andreas Mitterecker, Djork-Arné Clevert, Sepp Hochreiter
 
Title: Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Author(s): Thomas Unterthiner, Günter Klambauer, Sepp Hochreiter
 
Title: DeepSAR: Drug Target Prediction using Deep Learning
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Author(s): Andreas Mayr, Alexander Pfaffinger, Thomas Unterthiner, Günter Klambauer, Marvin Steijaert, Jörg K. Wegner, Hugo Ceulemans, Sepp Hochreiter
 
Title: Sharing of Very Short IBD Segments between Humans, Neandertals, and Denisovans
Published: bioRxiv, online April 7, 2014, doi:10.1101/003988
Author(s): Gundula Povysil, Sepp Hochreiter



Theses