Contents

• List of Figures
• List of Tables
• Introduction
  • Overview of the Results
  • Identity By Descent
  • HapFABIA
  
  
• Summary of the Results of IBD Segment Detection in Chr. 1 of the 1000Genomes Data
  • The 1000Genomes Data
  • Summary Statistics of the Detected Short IBD Segments
  • Biological Functions of the Detected Short IBD Segments
  
  
• Sharing of IBD Segments Between Populations and Genomes
  • Sharing of IBD Segments Between Human Populations
  • Sharing of IBD Segments Between Human and Ancient Genomes
  
  
• Analyses of Lengths of IBD Segments
  • Relating the IBD Length to Years from Present
  • Histograms of Lengths for the Different Genomes
  • IBD Segment Lengths of Human Populations
  • Lengths of IBD Segments that Match the Denisova or Neandertal Genome
  
  
• Examples of IBD Segments that Match Archaic Genomes
• How Many Individuals Share an IBD Segment?
• Small Likelihood of Identity by State: Small MAF vs. Many Individuals
• Population Groups of the 1000 Genomes Project
• Are Rare Variants Recent or Old?
  • Some Rare Variants are Recent and Some Old
  • Old SNVs Have Been Reported in Other Publications
  
  
• Bibliography